Fix mktarball errors with Manifest

3 files changed, 6 insertions, 319 deletions

diff --git a/.gitignore b/.gitignore
index 002c4a6..49b76e1 100644
--- a/.gitignore
+++ b/.gitignore
@@ -80,6 +80,8 @@ test/testfiles/plist_files/Makefile.in
 testpar/Makefile.in
 tools/Makefile.in
 tools/lib/Makefile.in
+tools/src/Makefile.in
+tools/test/Makefile.in
 tools/testfiles/Makefile.in
 tools/testfiles/pbits/Makefile.in
 tools/testfiles/vds/Makefile.in
diff --git a/MANIFEST b/MANIFEST
index f4b8b83..ae9c301 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1263,6 +1263,7 @@
 # h5format_convert sources
 ./tools/src/h5format_convert/Makefile.am
 ./tools/src/h5format_convert/h5format_convert.c
+./tools/test/h5format_convert/Makefile.am
 ./tools/test/h5format_convert/h5fc_chk_idx.c
 ./tools/test/h5format_convert/h5fc_gentest.c
 ./tools/test/h5format_convert/testfiles/h5fc_v_n_all.ddl
@@ -1336,7 +1337,6 @@
 ./tools/src/h5ls/Makefile.am
 ./tools/src/h5ls/h5ls.c
 ./tools/test/h5ls/Makefile.am
-./tools/test/h5ls/CMakeTestsVDS.cmake
 ./tools/test/h5ls/testh5ls.sh.in
 ./tools/test/h5ls/testh5lsvds.sh.in
 
@@ -2973,6 +2973,9 @@
 ./tools/test/h5dump/CMakeTestsPBITS.cmake
 ./tools/test/h5dump/CMakeTestsXML.cmake
 ./tools/test/h5dump/CMakeTestsVDS.cmake
+./tools/src/h5format_convert/CMakeLists.txt
+./tools/test/h5format_convert/CMakeLists.txt
+./tools/test/h5format_convert/CMakeTests.cmake
 ./tools/src/h5import/CMakeLists.txt
 ./tools/test/h5import/CMakeLists.txt
 ./tools/test/h5import/CMakeTests.cmake
diff --git a/tools/src/h5stat/testh5stat.sh.in b/tools/src/h5stat/testh5stat.sh.in
deleted file mode 100644
index cbb732c..0000000
--- a/tools/src/h5stat/testh5stat.sh.in
+++ /dev/null
@@ -1,318 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# Tests for the h5stat tool
-#
-# Modifcations:
-# 	Vailin Choi; July 2013
-# 	Add tests for -l, -m, -a options
-#
-
-srcdir=@srcdir@
-
-# Determine which filters are available
-USE_FILTER_SZIP="@USE_FILTER_SZIP@"
-USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
-
-TESTNAME=h5stat
-EXIT_SUCCESS=0
-EXIT_FAILURE=1
-
-STAT=h5stat               # The tool name
-STAT_BIN=`pwd`/$STAT    # The path of the tool binary
-
-RM='rm -rf'
-CMP='cmp -s'
-DIFF='diff -c'
-CP='cp'
-DIRNAME='dirname'
-LS='ls'
-AWK='awk'
-
-nerrors=0
-verbose=yes
-
-# source dirs
-SRC_TOOLS="$srcdir/.."
-SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
-
-# testfiles source dirs for tools
-SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
-SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
-SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
-SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
-SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
-SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
-SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
-
-TESTDIR=./testfiles
-test -d $TESTDIR || mkdir $TESTDIR
-
-######################################################################
-# test files
-# --------------------------------------------------------------------
-# All the test files copy from source directory to test directory
-# NOTE: Keep this framework to add/remove test files.
-#       Any test files from other tools can be used in this framework.
-#       This list are also used for checking exist.
-#       Comment '#' without space can be used.
-# --------------------------------------------------------------------
-LIST_HDF5_TEST_FILES="
-$SRC_H5STAT_TESTFILES/h5stat_filters.h5
-$SRC_H5STAT_TESTFILES/h5stat_tsohm.h5
-$SRC_H5STAT_TESTFILES/h5stat_newgrat.h5
-$SRC_H5STAT_TESTFILES/h5stat_idx.h5
-$SRC_H5STAT_TESTFILES/h5stat_threshold.h5
-"
-
-LIST_OTHER_TEST_FILES="
-$SRC_H5STAT_TESTFILES/h5stat_help1.ddl
-$SRC_H5STAT_TESTFILES/h5stat_help2.ddl
-$SRC_H5STAT_TESTFILES/h5stat_notexist.ddl
-$SRC_H5STAT_TESTFILES/h5stat_nofile.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-file.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-F.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-d.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-g.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-dT.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-UD.ddl
-$SRC_H5STAT_TESTFILES/h5stat_filters-UT.ddl
-$SRC_H5STAT_TESTFILES/h5stat_tsohm.ddl
-$SRC_H5STAT_TESTFILES/h5stat_newgrat.ddl
-$SRC_H5STAT_TESTFILES/h5stat_newgrat-UG.ddl
-$SRC_H5STAT_TESTFILES/h5stat_newgrat-UA.ddl
-$SRC_H5STAT_TESTFILES/h5stat_idx.ddl
-$SRC_H5STAT_TESTFILES/h5stat_err1_links.ddl
-$SRC_H5STAT_TESTFILES/h5stat_links1.ddl
-$SRC_H5STAT_TESTFILES/h5stat_links2.ddl
-$SRC_H5STAT_TESTFILES/h5stat_links3.ddl
-$SRC_H5STAT_TESTFILES/h5stat_links4.ddl
-$SRC_H5STAT_TESTFILES/h5stat_links5.ddl
-$SRC_H5STAT_TESTFILES/h5stat_err1_dims.ddl
-$SRC_H5STAT_TESTFILES/h5stat_dims1.ddl
-$SRC_H5STAT_TESTFILES/h5stat_dims2.ddl
-$SRC_H5STAT_TESTFILES/h5stat_err1_numattrs.ddl
-$SRC_H5STAT_TESTFILES/h5stat_err2_numattrs.ddl
-$SRC_H5STAT_TESTFILES/h5stat_numattrs1.ddl
-$SRC_H5STAT_TESTFILES/h5stat_numattrs2.ddl
-$SRC_H5STAT_TESTFILES/h5stat_numattrs3.ddl
-$SRC_H5STAT_TESTFILES/h5stat_numattrs4.ddl
-"
-
-#
-# copy test files and expected output files from source dirs to test dir
-#
-COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
-
-COPY_TESTFILES_TO_TESTDIR()
-{
-    # copy test files. Used -f to make sure get a new copy
-    for tstfile in $COPY_TESTFILES
-    do
-        # ignore '#' comment
-        echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
-        RET=$?
-        if [ $RET -eq 1 ]; then
-            # skip cp if srcdir is same as destdir
-            # this occurs when build/test performed in source dir and
-            # make cp fail
-            SDIR=`$DIRNAME $tstfile`
-            INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
-            INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
-            if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-    	        $CP -f $tstfile $TESTDIR
-                if [ $? -ne 0 ]; then
-                    echo "Error: FAILED to copy $tstfile ."
-                
-                    # Comment out this to CREATE expected file
-                    exit $EXIT_FAILURE
-                fi
-            fi
-        fi
-    done
-}
-
-CLEAN_TESTFILES_AND_TESTDIR()
-{
-    # skip rm if srcdir is same as destdir
-    # this occurs when build/test performed in source dir and
-    # make cp fail
-    SDIR=$SRC_H5STAT_TESTFILES
-    INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
-    INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
-    if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
-        $RM $TESTDIR
-    fi
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Testing".
-#
-TESTING() {
-   SPACES="                                                               "
-   echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Source in the output filter function definitions.
-. $srcdir/../../bin/output_filter.sh
-
-# Run a test and print PASS or *FAIL*.  If a test fails then increment
-# the `nerrors' global variable and (if $verbose is set) display the
-# difference between the actual output and the expected output. The
-# expected output is given as the first argument to this function and
-# the actual output file is calculated by replacing the `.ddl' with
-# `.out'.  The actual output is not removed if $HDF5_NOCLEANUP has a
-# non-zero value.
-#
-TOOLTEST() {
-   expect="$TESTDIR/$1"
-   actual="$TESTDIR/`basename $1 .ddl`.out"
-   actual_err="$TESTDIR/`basename $1 .ddl`.err"
-   actual_sav=${actual}-sav
-   actual_err_sav=${actual_err}-sav
-   shift
-
-   # Run test.
-   TESTING $STAT $@
-   (
-      cd $TESTDIR
-      $RUNSERIAL $STAT_BIN $@
-   ) >$actual 2>$actual_err
-
-   # save actual and actual_err in case they are needed later.
-   cp $actual $actual_sav
-   STDOUT_FILTER $actual
-   cp $actual_err $actual_err_sav
-   STDERR_FILTER $actual_err
-   cat $actual_err >> $actual
-
-   if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-    echo " CREATED"
-    cp $actual $expect
-   elif $CMP $expect $actual; then
-      echo " PASSED"
-   else
-      echo "*FAILED*"
-      echo "    Expected result (*.ddl) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
-   fi
-
-   # Clean up output file
-   if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_err $actual_sav $actual_err_sav
-   fi
-}
-
-
-# Print a "SKIP" message
-SKIP() {
-	 TESTING $STAT $@
-	  echo  " -SKIP-"
-}
-  
-
-
-##############################################################################
-##############################################################################
-###			  T H E   T E S T S                                ###
-##############################################################################
-##############################################################################
-# prepare for test
-COPY_TESTFILES_TO_TESTDIR
-
-# Test for help flag
-TOOLTEST h5stat_help1.ddl -h
-TOOLTEST h5stat_help2.ddl --help
-# Test when h5stat a file that does not exist
-TOOLTEST h5stat_notexist.ddl notexist.h5
-TOOLTEST h5stat_nofile.ddl ''
-
-# Test file with groups, compressed datasets, user-applied fileters, etc.
-# h5stat_filters.h5 is a copy of ../../testfiles/tfilters.h5 as of release 1.8.0-alpha4
-TOOLTEST h5stat_filters.ddl h5stat_filters.h5
-TOOLTEST h5stat_filters-file.ddl  -f   h5stat_filters.h5
-TOOLTEST h5stat_filters-F.ddl  -F   h5stat_filters.h5
-TOOLTEST h5stat_filters-d.ddl  -d   h5stat_filters.h5
-TOOLTEST h5stat_filters-g.ddl  -g   h5stat_filters.h5
-TOOLTEST h5stat_filters-dT.ddl -dT  h5stat_filters.h5
-TOOLTEST h5stat_filters-UD.ddl -D h5stat_filters.h5
-TOOLTEST h5stat_filters-UT.ddl -T h5stat_filters.h5
-#
-# h5stat_tsohm.h5 is a copy of ../../../test/tsohm.h5 generated by tsohm.c 
-# as of release 1.8.7-snap0 (on a 64-bit machine)
-TOOLTEST h5stat_tsohm.ddl h5stat_tsohm.h5
-# h5stat_newgrat.h5 is generated by h5stat_gentest.c
-TOOLTEST h5stat_newgrat.ddl h5stat_newgrat.h5
-TOOLTEST h5stat_newgrat-UG.ddl -G h5stat_newgrat.h5
-TOOLTEST h5stat_newgrat-UA.ddl -A h5stat_newgrat.h5
-# h5stat_idx.h5 is generated by h5stat_gentest.c
-TOOLTEST h5stat_idx.ddl h5stat_idx.h5
-#
-# Tests for -l (--links) option on h5stat_threshold.h5: 
-# 	-l 0 (incorrect threshold value)
-# 	-g -l 8
-# 	--links=8
-# 	--links=20 -g
-TOOLTEST h5stat_err1_links.ddl -l 0 h5stat_threshold.h5
-TOOLTEST h5stat_links1.ddl -g -l 8 h5stat_threshold.h5
-TOOLTEST h5stat_links2.ddl --links=8 h5stat_threshold.h5
-TOOLTEST h5stat_links3.ddl --links=20 -g h5stat_threshold.h5
-#
-# Tests for -l (--links) option on h5stat_newgrat.h5: 
-# 	-g
-# 	-g -l 40000
-TOOLTEST h5stat_links4.ddl -g h5stat_newgrat.h5
-TOOLTEST h5stat_links5.ddl -g -l 40000 h5stat_newgrat.h5
-#
-# Tests for -m (--dims) option on h5stat_threshold.h5
-# 	-d --dims=-1 (incorrect threshold value)
-# 	-gd -m 5
-# 	-d --di=15
-TOOLTEST h5stat_err1_dims.ddl -d --dims=-1 h5stat_threshold.h5
-TOOLTEST h5stat_dims1.ddl -gd -m 5 h5stat_threshold.h5
-TOOLTEST h5stat_dims2.ddl -d --di=15 h5stat_threshold.h5
-#
-# Tests for -a option on h5stat_threshold.h5
-# 	-a -2 (incorrect threshold value)
-#	--numattrs (without threshold value)
-#	-AS -a 10
-#	-a 1
-#	-A --numattrs=25
-TOOLTEST h5stat_err1_numattrs.ddl -a -2 h5stat_threshold.h5
-TOOLTEST h5stat_err2_numattrs.ddl --numattrs h5stat_threshold.h5
-TOOLTEST h5stat_numattrs1.ddl -AS -a 10 h5stat_threshold.h5
-TOOLTEST h5stat_numattrs2.ddl -a 1 h5stat_threshold.h5
-TOOLTEST h5stat_numattrs3.ddl -A --numattrs=25 h5stat_threshold.h5
-#
-# Tests for -a option on h5stat_newgrat.h5
-#	-A -a 100
-TOOLTEST h5stat_numattrs4.ddl -A -a 100 h5stat_newgrat.h5
-#
-
-# Clean up temporary files/directories
-CLEAN_TESTFILES_AND_TESTDIR
-
-if test $nerrors -eq 0 ; then
-    echo "All $TESTNAME tests passed."
-    exit $EXIT_SUCCESS
-else
-    echo "$TESTNAME tests failed with $nerrors errors."
-    exit $EXIT_FAILURE
-fi
-