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authorAllen Byrne <byrn@hdfgroup.org>2011-05-20 17:09:57 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2011-05-20 17:09:57 (GMT)
commit3f11adaec28a55a5772d702752b433aa0289adaf (patch)
tree2b30e23adcc5e32c43c2dc9d2f4039bf45a34c8a
parent2de5fa986fc4e8588af5df33ed5c6500a7fa5a96 (diff)
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[svn-r20875] Refactor h5import to close files and free allocations. Also corrected test dependencies so that memcheck would process tests in correct order.
Tested: local linux - confirmed with valgrind
-rwxr-xr-xconfig/cmake/CTestCustom.cmake16
-rw-r--r--tools/h5import/CMakeLists.txt37
-rwxr-xr-xtools/h5import/h5import.c4317
-rwxr-xr-xtools/h5import/h5import.h177
4 files changed, 2222 insertions, 2325 deletions
diff --git a/config/cmake/CTestCustom.cmake b/config/cmake/CTestCustom.cmake
index efc4443..b687051 100755
--- a/config/cmake/CTestCustom.cmake
+++ b/config/cmake/CTestCustom.cmake
@@ -41,22 +41,6 @@ SET (CTEST_CUSTOM_MEMCHECK_IGNORE
H5DUMP-XML-clearall-objects
######### tools/h5import #########
H5IMPORT-clear-objects
- H5IMPORT-ASCII_F32-clear-objects
- H5IMPORT-ASCII_UI16-clear-objects
- H5IMPORT-ASCII_UI32-clear-objects
- H5IMPORT-ASCII_I8-clear-objects
- H5IMPORT-ASCII_I16-clear-objects
- H5IMPORT-ASCII_I32-clear-objects
- H5IMPORT-ASCII_F64_R1-clear-objects
- H5IMPORT-BINARY_I8_EOF-clear-objects
- H5IMPORT-STR-clear-objects
- H5IMPORT-BINARY_UI32-clear-objects
- H5IMPORT-BINARY_UI16-clear-objects
- H5IMPORT-BINARY_I32-clear-objects
- H5IMPORT-BINARY_I8-clear-objects
- H5IMPORT-BINARY_I16-clear-objects
- H5IMPORT-BINARY_F64-clear-objects
- H5IMPORT-ASCII_F64-clear-objects
######### tools/h5jam #########
H5JAM-SETUP-N_twithub_u10_c-clear-objects
H5JAM-SETUP-N_twithub_u10_c
diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt
index 39945d3..fb0c938 100644
--- a/tools/h5import/CMakeLists.txt
+++ b/tools/h5import/CMakeLists.txt
@@ -116,21 +116,27 @@ IF (BUILD_TESTING)
##############################################################################
##############################################################################
MACRO (ADD_H5_TEST testname importfile conffile testfile)
- ADD_TEST (
- NAME H5IMPORT-${testname}-clear-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- ${testfile}
- ${testfile}.new
- ${testfile}.new.err
- ${testfile}.out
- ${testfile}.out.err
- )
+ IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ ADD_TEST (
+ NAME H5IMPORT-${testname}-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove
+ ${testfile}
+ ${testfile}.new
+ ${testfile}.new.err
+ ${testfile}.out
+ ${testfile}.out.err
+ )
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5IMPORT-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
+ SET (last_test "H5IMPORT-${testname}-clear-objects")
+ ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+
+ ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c testfiles/${conffile} -o ${testfile})
IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5IMPORT-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
+ SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
- ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c testfiles/${conffile} -o ${testfile})
- SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS H5IMPORT-${testname}-clear-objects)
SET (last_test "H5IMPORT-${testname}")
# If using memchecker add tests without using scripts
@@ -187,9 +193,12 @@ IF (BUILD_TESTING)
txtin32.txt
${HDF5_REFERENCE_TEST_FILES}
)
+ SET (last_test "H5IMPORT-clear-objects")
ADD_TEST (NAME H5IMPORT-h5importtest COMMAND $<TARGET_FILE:h5importtest>)
- SET_TESTS_PROPERTIES (H5IMPORT-h5importtest PROPERTIES DEPENDS H5IMPORT-clear-objects)
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5IMPORT-h5importtest PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
SET (last_test "H5IMPORT-h5importtest")
# ----- TESTING "ASCII I32 rank 3 - Output BE " ;
diff --git a/tools/h5import/h5import.c b/tools/h5import/h5import.c
index 82b92d2..bbd8746 100755
--- a/tools/h5import/h5import.c
+++ b/tools/h5import/h5import.c
@@ -22,250 +22,257 @@
#include "h5import.h"
#include "h5tools_utils.h"
-
/* Name of tool */
#define PROGRAMNAME "h5import"
int main(int argc, char *argv[])
{
- struct Options opt;
- int outfile_named = FALSE;
- int token;
- int i;
- int state = 0;
- struct Input *in=NULL;
-
- const char *err1 = "Invalid number of arguments: %d.\n";
- const char *err2 = "Error in state table.\n";
- const char *err3 = "No output file given.\n";
- const char *err4 = "Program aborted.\n";
- const char *err5 = "Invalid path %s.\n";
- const char *err6 = "Invalid dimensions - %s.\n";
- const char *err7 = "Invalid type of data - %s.\n";
- const char *err8 = "Invalid size of data - %s.\n";
- const char *err9 = "Cannot specify more than 30 input files in one call to h5import.\n";
+ struct Options opt;
+ int outfile_named = FALSE;
+ int token;
+ int i;
+ int state = 0;
+ struct Input *in = NULL;
+
+ const char *err1 = "Invalid number of arguments: %d.\n";
+ const char *err2 = "Error in state table.\n";
+ const char *err3 = "No output file given.\n";
+ const char *err4 = "Program aborted.\n";
+ const char *err5 = "Invalid path %s.\n";
+ const char *err6 = "Invalid dimensions - %s.\n";
+ const char *err7 = "Invalid type of data - %s.\n";
+ const char *err8 = "Invalid size of data - %s.\n";
+ const char *err9 = "Cannot specify more than 30 input files in one call to h5import.\n";
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- (void)HDsetvbuf(stderr, (char *) NULL, _IOLBF, 0);
- (void)HDsetvbuf(stdout, (char *) NULL, _IOLBF, 0);
+ (void) HDsetvbuf(stderr, (char *) NULL, _IOLBF, 0);
+ (void) HDsetvbuf(stdout, (char *) NULL, _IOLBF, 0);
- if ( argv[1] && (strcmp("-V",argv[1])==0) )
- {
+ if (argv[1] && (strcmp("-V", argv[1]) == 0)) {
print_version("h5import");
exit(EXIT_SUCCESS);
+ }
+ /*
+ * validate the number of command line arguments
+ */
+ if (argc < 2) {
+ (void) fprintf(stderr, err1, argc);
+ usage(argv[0]);
+ goto err;
}
- /*
- * validate the number of command line arguments
- */
+ /* Initialize the file structure to 0 */
+ HDmemset(&opt, 0, sizeof(struct Options));
- if (argc < 2)
- {
- (void) fprintf(stderr, err1, argc);
- usage(argv[0]);
- goto err;
- }
+ /*
+ * parse the command line
+ */
+ for (i = 1; i < argc; i++) {
+ if ((token = gtoken(argv[i])) == ERR) {
+ usage(argv[0]);
+ goto err;
+ }
- /* Initialize the file count to 0 */
- opt.fcount = 0;
+ state = state_table[state][token];
- /*
- * parse the command line
- */
+ switch (state) {
- for (i = 1; i < argc; i++)
- {
- if ((token = gtoken(argv[i])) == ERR)
- {
- usage(argv[0]);
- goto err;
- }
+ case 1: /* counting input files */
+ if (opt.fcount < 29) {
+ (void) HDstrcpy(opt.infiles[opt.fcount].datafile, argv[i]);
+ in = &(opt.infiles[opt.fcount].in);
+ opt.infiles[opt.fcount].config = 0;
+ setDefaultValues(in, opt.fcount);
+ opt.fcount++;
+ }
+ else {
+ (void) fprintf(stderr, err9, argv[i]);
+ goto err;
+ }
- state = state_table[state][token];
+ break;
- switch (state)
- {
+ case 2: /* -c found; look for configfile */
+ break;
- case 1: /* counting input files */
- if (opt.fcount < 29) {
- (void) HDstrcpy(opt.infiles[opt.fcount].datafile, argv[i]);
- in = &(opt.infiles[opt.fcount].in);
- opt.infiles[opt.fcount].config = 0;
- setDefaultValues(in, opt.fcount);
- opt.fcount++;
- }
- else {
- (void) fprintf(stderr, err9, argv[i]);
- goto err;
- }
-
- break;
-
- case 2: /* -c found; look for configfile */
- break;
-
- case 3: /* get configfile name */
- (void) HDstrcpy(opt.infiles[opt.fcount-1].configfile, argv[i]);
- opt.infiles[opt.fcount-1].config = 1;
- break;
-
- case 4: /* -o found; look for outfile */
- break;
-
- case 5: /* get outfile found */
- (void) HDstrcpy(opt.outfile, argv[i]);
- outfile_named = TRUE;
- break;
-
- case 6: /* -h found; help, then exit */
- help(argv[0]);
- exit(EXIT_SUCCESS);
- break;
+ case 3: /* get configfile name */
+ (void) HDstrcpy(opt.infiles[opt.fcount-1].configfile, argv[i]);
+ opt.infiles[opt.fcount - 1].config = 1;
+ break;
- case 7: /* -d found; look for dimensions */
- break;
+ case 4: /* -o found; look for outfile */
+ break;
- case 8: /* read dimensions */
- if (parseDimensions(in, argv[i]) == -1)
- {
- (void) fprintf(stderr, err6, argv[i]);
- goto err;
- }
- break;
+ case 5: /* get outfile found */
+ (void) HDstrcpy(opt.outfile, argv[i]);
+ outfile_named = TRUE;
+ break;
- case 9: /* -p found; look for path name */
- break;
+ case 6: /* -h found; help, then exit */
+ help(argv[0]);
+ exit(EXIT_SUCCESS);
+ break;
- case 10: /* read path name */
- if (parsePathInfo(&in->path, argv[i]) == -1)
- {
- (void) fprintf(stderr, err5, argv[i]);
- goto err;
- }
- break;
+ case 7: /* -d found; look for dimensions */
+ break;
- case 11: /* -t found; look for data type */
- break;
+ case 8: /* read dimensions */
+ if (parseDimensions(in, argv[i]) == -1) {
+ (void) fprintf(stderr, err6, argv[i]);
+ goto err;
+ }
+ break;
- case 12: /* read data type */
- if (getInputClass(in, argv[i]) == -1)
- {
- (void) fprintf(stderr, err7, argv[i]);
- goto err;
- }
+ case 9: /* -p found; look for path name */
+ break;
- if (in->inputClass == 0 || in->inputClass == 4)
- in->outputClass = 0;
- if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3)
- in->outputClass = 1;
- if (in->inputClass == 6 || in->inputClass == 7)
- in->outputClass = 2;
- break;
-
- case 13: /* -s found; look for data size */
- break;
-
- case 14: /* read data size */
- if (getInputSize(in, (int)HDstrtol(argv[i], NULL, BASE_10)) == -1)
- {
- (void) fprintf(stderr, err8, argv[i]);
- goto err;
+ case 10: /* read path name */
+ if (parsePathInfo(&in->path, argv[i]) == -1) {
+ (void) fprintf(stderr, err5, argv[i]);
+ goto err;
+ }
+ break;
+
+ case 11: /* -t found; look for data type */
+ break;
+
+ case 12: /* read data type */
+ if (getInputClass(in, argv[i]) == -1) {
+ (void) fprintf(stderr, err7, argv[i]);
+ goto err;
+ }
+
+ if (in->inputClass == 0 || in->inputClass == 4)
+ in->outputClass = 0;
+ if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3)
+ in->outputClass = 1;
+ if (in->inputClass == 6 || in->inputClass == 7)
+ in->outputClass = 2;
+ break;
+
+ case 13: /* -s found; look for data size */
+ break;
+
+ case 14: /* read data size */
+ if (getInputSize(in, (int) HDstrtol(argv[i], NULL, BASE_10)) == -1) {
+ (void) fprintf(stderr, err8, argv[i]);
+ goto err;
+ }
+ /*set default value for output-size */
+ in->outputSize = in->inputSize;
+ break;
+
+ case ERR: /* command syntax error */
+ default:
+ (void) fprintf(stderr, "%s", err2);
+ usage(argv[0]);
+ goto err;
}
- /*set default value for output-size */
- in->outputSize = in->inputSize;
- break;
+ }
- case ERR: /* command syntax error */
- default:
- (void) fprintf(stderr, "%s", err2);
+ if (FALSE == outfile_named) {
+ (void) fprintf(stderr, "%s", err3);
usage(argv[0]);
goto err;
}
- }
- if (FALSE == outfile_named)
- {
- (void) fprintf(stderr, "%s", err3);
- usage(argv[0]);
- goto err;
- }
-
- if (process(&opt) == -1)
- goto err;
+ if (process(&opt) == -1)
+ goto err;
+
+ for (i = 0; i < opt.fcount; i++) {
+ in = &(opt.infiles[i].in);
+ if (in->sizeOfDimension)
+ free(in->sizeOfDimension);
+ if (in->sizeOfChunk)
+ free(in->sizeOfChunk);
+ if (in->maxsizeOfDimension)
+ free(in->maxsizeOfDimension);
+ if (in->externFilename)
+ free(in->externFilename);
+ if (in->data)
+ free(in->data);
+ }
- return(EXIT_SUCCESS);
- err:
+ return (EXIT_SUCCESS);
+err:
(void) fprintf(stderr, "%s", err4);
- return(EXIT_FAILURE);
+ for (i = 0; i < opt.fcount; i++) {
+ in = &(opt.infiles[i].in);
+ if (in->sizeOfDimension)
+ free(in->sizeOfDimension);
+ if (in->sizeOfChunk)
+ free(in->sizeOfChunk);
+ if (in->maxsizeOfDimension)
+ free(in->maxsizeOfDimension);
+ if (in->externFilename)
+ free(in->externFilename);
+ if (in->data)
+ free(in->data);
+ }
+ return (EXIT_FAILURE);
}
-static int
-gtoken(char *s)
+static int gtoken(char *s)
{
- size_t len;
- int token;
-
- const char *err1 = "Illegal argument: %s.\n";
-
- /*
- * identify the token type
- */
- if (s[0] == '-')
- { /* option name (or negative number) */
- token = ERR;
- len = HDstrlen(&s[1]);
- switch (s[1])
- {
- case 'o':
- if (!HDstrncmp("outfile", &s[1], len))
- token = OPT_o;
- break;
-
- case 'c':
- if (!HDstrncmp("config", &s[1], len))
- token = OPT_c;
- break;
-
- case 'h':
- if (!HDstrncmp("help", &s[1], len))
- token = OPT_h;
- break;
-
- case 'd':
- if (!HDstrncmp("dims", &s[1], len))
- token = OPT_d;
- break;
-
- case 'p':
- if (!HDstrncmp("path", &s[1], len))
- token = OPT_p;
- break;
-
- case 't':
- if (!HDstrncmp("type", &s[1], len))
- token = OPT_t;
- break;
-
- case 's':
- if (!HDstrncmp("size", &s[1], len))
- token = OPT_s;
- break;
- }
+ size_t len;
+ int token;
+
+ const char *err1 = "Illegal argument: %s.\n";
+
+ /*
+ * identify the token type
+ */
+ if (s[0] == '-') { /* option name (or negative number) */
+ token = ERR;
+ len = HDstrlen(&s[1]);
+ switch (s[1]) {
+ case 'o':
+ if (!HDstrncmp("outfile", &s[1], len))
+ token = OPT_o;
+ break;
- if (token == ERR)
- (void) fprintf(stderr, err1, s);
- }
- else /* filename */
- {
- token = FILNAME;
- }
- return (token);
-}
+ case 'c':
+ if (!HDstrncmp("config", &s[1], len))
+ token = OPT_c;
+ break;
+
+ case 'h':
+ if (!HDstrncmp("help", &s[1], len))
+ token = OPT_h;
+ break;
+
+ case 'd':
+ if (!HDstrncmp("dims", &s[1], len))
+ token = OPT_d;
+ break;
+
+ case 'p':
+ if (!HDstrncmp("path", &s[1], len))
+ token = OPT_p;
+ break;
+ case 't':
+ if (!HDstrncmp("type", &s[1], len))
+ token = OPT_t;
+ break;
+
+ case 's':
+ if (!HDstrncmp("size", &s[1], len))
+ token = OPT_s;
+ break;
+ }
+ if (token == ERR)
+ (void) fprintf(stderr, err1, s);
+ }
+ else { /* filename */
+ token = FILNAME;
+ }
+ return (token);
+}
/*-------------------------------------------------------------------------
* Function: processDataFile
@@ -282,501 +289,440 @@ gtoken(char *s)
*-------------------------------------------------------------------------
*/
-static int
-processDataFile(char *infile, struct Input *in, FILE **strm, hid_t file_id)
+static int processDataFile(char *infile, struct Input *in, hid_t file_id)
{
- const char *err1 = "Unable to open the input file %s for reading.\n";
- const char *err2 = "Error in allocating integer data storage.\n";
- const char *err3 = "Error in allocating floating-point data storage.\n";
- const char *err4 = "Error in reading integer data.\n";
- const char *err5 = "Error in reading floating-point data.\n";
- const char *err6 = "Error in allocating unsigned integer data storage.\n";
- const char *err7 = "Error in reading unsigned integer data.\n";
- const char *err10 = "Unrecognized input class type.\n";
- const char *err11 = "Error in reading string data.\n";
-
- /*-------------------------------------------------------------------------
- * special case for opening binary classes in WIN32
- * "FP" denotes a floating point binary file,
- * "IN" denotes a signed integer binary file,
- * "UIN" denotes an unsigned integer binary file,
- *-------------------------------------------------------------------------
- */
- if ( in->inputClass == 4 /* "IN" */ ||
- in->inputClass == 3 /* "FP" */ ||
- in->inputClass == 7 /* "UIN" */
-
- )
- {
+ FILE *strm;
+ const char *err1 = "Unable to open the input file %s for reading.\n";
+ const char *err2 = "Error in allocating integer data storage.\n";
+ const char *err3 = "Error in allocating floating-point data storage.\n";
+ const char *err4 = "Error in reading integer data.\n";
+ const char *err5 = "Error in reading floating-point data.\n";
+ const char *err6 = "Error in allocating unsigned integer data storage.\n";
+ const char *err7 = "Error in reading unsigned integer data.\n";
+ const char *err10 = "Unrecognized input class type.\n";
+ const char *err11 = "Error in reading string data.\n";
+
+ /*-------------------------------------------------------------------------
+ * special case for opening binary classes in WIN32
+ * "FP" denotes a floating point binary file,
+ * "IN" denotes a signed integer binary file,
+ * "UIN" denotes an unsigned integer binary file,
+ *-------------------------------------------------------------------------
+ */
+ if (in->inputClass == 4 /* "IN" */|| in->inputClass == 3 /* "FP" */|| in->inputClass == 7 /* "UIN" */) {
#ifdef WIN32
- if ((*strm = fopen(infile, "rb")) == NULL)
- {
- (void) fprintf(stderr, err1, infile);
- return(-1);
- }
+ if ((strm = fopen(infile, "rb")) == NULL) {
+ (void) fprintf(stderr, err1, infile);
+ return(-1);
+ }
#else
- if ((*strm = fopen(infile, "r")) == NULL)
- {
- (void) fprintf(stderr, err1, infile);
- return(-1);
- }
+ if ((strm = fopen(infile, "r")) == NULL) {
+ (void) fprintf(stderr, err1, infile);
+ return (-1);
+ }
#endif
- }
- /*-------------------------------------------------------------------------
- * if the input class is not binary, just use "r"
- *-------------------------------------------------------------------------
- */
- else
- {
- if ((*strm = fopen(infile, "r")) == NULL)
- {
- (void) fprintf(stderr, err1, infile);
- return(-1);
- }
- }
-
-
+ }
+ /*-------------------------------------------------------------------------
+ * if the input class is not binary, just use "r"
+ *-------------------------------------------------------------------------
+ */
+ else {
+ if ((strm = fopen(infile, "r")) == NULL) {
+ (void) fprintf(stderr, err1, infile);
+ return (-1);
+ }
+ }
- switch(in->inputClass)
- {
+ switch (in->inputClass) {
case 0: /* TEXTIN */
case 4: /* IN */
- if (allocateIntegerStorage(in) == -1)
- {
- (void) fprintf(stderr, err2, infile);
- return(-1);
- }
-
- if (readIntegerData(strm, in) == -1)
- {
- (void) fprintf(stderr, err4, infile);
- return(-1);
- }
- break;
+ if (allocateIntegerStorage(in) == -1) {
+ (void) fprintf(stderr, err2, infile);
+ fclose(strm);
+ return (-1);
+ }
+
+ if (readIntegerData(strm, in) == -1) {
+ (void) fprintf(stderr, err4, infile);
+ fclose(strm);
+ return (-1);
+ }
+ break;
case 1: /* TEXTFP */
case 2: /* TEXTFPE */
case 3: /* FP */
- if (allocateFloatStorage(in) == -1)
- {
- (void) fprintf(stderr, err3, infile);
- return(-1);
+ if (allocateFloatStorage(in) == -1) {
+ (void) fprintf(stderr, err3, infile);
+ fclose(strm);
+ return (-1);
- }
+ }
- if (readFloatData(strm, in) == -1)
- {
- (void) fprintf(stderr, err5, infile);
- return(-1);
- }
- break;
+ if (readFloatData(strm, in) == -1) {
+ (void) fprintf(stderr, err5, infile);
+ fclose(strm);
+ return (-1);
+ }
+ break;
case 5: /* STR */
- if (processStrData(strm, in, file_id) == -1)
- {
+ if (processStrData(strm, in, file_id) == -1) {
(void) fprintf(stderr, err11, infile);
- return(-1);
+ fclose(strm);
+ return (-1);
}
-
-
- break;
+ break;
case 6: /* TEXTUIN */
case 7: /* UIN */
- if (allocateUIntegerStorage(in) == -1)
- {
- (void) fprintf(stderr, err6, infile);
- return(-1);
- }
- if (readUIntegerData(strm, in) == -1)
- {
- (void) fprintf(stderr, err7, infile);
- return(-1);
- }
- break;
+ if (allocateUIntegerStorage(in) == -1) {
+ (void) fprintf(stderr, err6, infile);
+ fclose(strm);
+ return (-1);
+ }
+ if (readUIntegerData(strm, in) == -1) {
+ (void) fprintf(stderr, err7, infile);
+ fclose(strm);
+ return (-1);
+ }
+ break;
default:
(void) fprintf(stderr, "%s", err10);
- return(-1);
- }
- return (0);
+ fclose(strm);
+ return (-1);
+ }
+ fclose(strm);
+ return (0);
}
-static int
-readIntegerData(FILE **strm, struct Input *in)
+static int readIntegerData(FILE *strm, struct Input *in)
{
- H5DT_INT8 *in08;
- H5DT_INT16 *in16, temp;
- H5DT_INT32 *in32;
+ H5DT_INT8 *in08;
+ H5DT_INT16 *in16;
+ H5DT_INT16 temp;
+ H5DT_INT32 *in32;
#ifndef WIN32
- H5DT_INT64 *in64;
- char buffer[256];
+ H5DT_INT64 *in64;
+ char buffer[256];
#endif
- hsize_t len=1;
- hsize_t i;
- int j;
+ hsize_t len = 1;
+ hsize_t i;
+ int j;
- const char *err1 = "Unable to get integer value from file.\n";
- const char *err2 = "Unrecognized input class type.\n";
- const char *err3 = "Invalid input size.\n";
+ const char *err1 = "Unable to get integer value from file.\n";
+ const char *err2 = "Unrecognized input class type.\n";
+ const char *err3 = "Invalid input size.\n";
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
- switch(in->inputSize)
- {
+ switch (in->inputSize) {
case 8:
- switch(in->inputClass)
- {
+ switch (in->inputClass) {
case 0: /* TEXTIN */
- in08 = (H5DT_INT8 *) in->data;
- for (i = 0; i < len; i++, in08++)
- {
- if (fscanf(*strm, "%hd", &temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ in08 = (H5DT_INT8 *) in->data;
+ for (i = 0; i < len; i++, in08++) {
+ if (fscanf(strm, "%hd", &temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ (*in08) = (H5DT_INT8) temp;
}
- (*in08) = (H5DT_INT8)temp;
- }
- break;
+ break;
case 4: /* IN */
- in08 = (H5DT_INT8 *) in->data;
- for (i = 0; i < len; i++, in08++)
- {
- if (fread((char *) in08, sizeof(H5DT_INT8), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ in08 = (H5DT_INT8 *) in->data;
+ for (i = 0; i < len; i++, in08++) {
+ if (fread((char *) in08, sizeof(H5DT_INT8), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
case 16:
- in16 = (H5DT_INT16 *) in->data;
- switch(in->inputClass)
- {
+ in16 = (H5DT_INT16 *) in->data;
+ switch (in->inputClass) {
case 0: /* TEXTIN */
- for (i = 0; i < len; i++, in16++)
- {
- if (fscanf(*strm, "%hd", in16) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in16++) {
+ if (fscanf(strm, "%hd", in16) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- in16 = (H5DT_INT16 *) in->data;
- break;
+ in16 = (H5DT_INT16 *) in->data;
+ break;
case 4: /* IN */
- for (i = 0; i < len; i++, in16++)
- {
- if (fread((char *) in16, sizeof(H5DT_INT16), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in16++) {
+ if (fread((char *) in16, sizeof(H5DT_INT16), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
case 32:
- in32 = (H5DT_INT32 *) in->data;
- switch(in->inputClass)
- {
+ in32 = (H5DT_INT32 *) in->data;
+ switch (in->inputClass) {
case 0: /* TEXTIN */
- for (i = 0; i < len; i++, in32++)
- {
- if (fscanf(*strm, "%d", in32) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in32++) {
+ if (fscanf(strm, "%d", in32) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
case 4: /* IN */
- for (i = 0; i < len; i++, in32++)
- {
- if (fread((char *) in32, sizeof(H5DT_INT32), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in32++) {
+ if (fread((char *) in32, sizeof(H5DT_INT32), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
#ifndef _WIN32
case 64:
- in64 = (H5DT_INT64 *) in->data;
- switch(in->inputClass)
- {
+ in64 = (H5DT_INT64 *) in->data;
+ switch (in->inputClass) {
case 0: /* TEXTIN */
- for (i = 0; i < len; i++, in64++)
- {
- if (fscanf(*strm, "%s", buffer) < 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in64++) {
+ if (fscanf(strm, "%s", buffer) < 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ *in64 = (H5DT_INT64) HDstrtoll(buffer, NULL, 10);
}
- *in64 = (H5DT_INT64) HDstrtoll(buffer, NULL, 10);
- }
- break;
+ break;
case 4: /* IN */
- for (i = 0; i < len; i++, in64++)
- {
- if (fread((char *) in64, sizeof(H5DT_INT64), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in64++) {
+ if (fread((char *) in64, sizeof(H5DT_INT64), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
#endif /* ifndef _WIN32 */
default:
- (void) fprintf(stderr, "%s", err3);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err3);
+ break;
+ }
+ return (0);
}
-static int
-readUIntegerData(FILE **strm, struct Input *in)
+static int readUIntegerData(FILE *strm, struct Input *in)
{
- H5DT_UINT8 *in08;
- H5DT_UINT16 *in16, temp;
- H5DT_UINT32 *in32;
+ H5DT_UINT8 *in08;
+ H5DT_UINT16 *in16;
+ H5DT_UINT16 temp;
+ H5DT_UINT32 *in32;
#ifndef _WIN32
- H5DT_UINT64 *in64;
- char buffer[256];
+ H5DT_UINT64 *in64;
+ char buffer[256];
#endif
- hsize_t len=1;
- hsize_t i;
- int j;
- const char *err1 = "Unable to get unsigned integer value from file.\n";
- const char *err2 = "Unrecognized input class type.\n";
- const char *err3 = "Invalid input size.\n";
-
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
-
- switch(in->inputSize)
- {
+ hsize_t len = 1;
+ hsize_t i;
+ int j;
+ const char *err1 = "Unable to get unsigned integer value from file.\n";
+ const char *err2 = "Unrecognized input class type.\n";
+ const char *err3 = "Invalid input size.\n";
+
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
+
+ switch (in->inputSize) {
case 8:
- switch(in->inputClass)
- {
+ switch (in->inputClass) {
case 6: /* TEXTUIN */
- in08 = (H5DT_UINT8 *) in->data;
- for (i = 0; i < len; i++, in08++)
- {
- if (fscanf(*strm, "%hu", &temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ in08 = (H5DT_UINT8 *) in->data;
+ for (i = 0; i < len; i++, in08++) {
+ if (fscanf(strm, "%hu", &temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ (*in08) = (H5DT_UINT8) temp;
}
- (*in08) = (H5DT_UINT8)temp;
- }
- break;
+ break;
case 7: /* UIN */
- in08 = (H5DT_UINT8 *) in->data;
- for (i = 0; i < len; i++, in08++)
- {
- if (fread((char *) in08, sizeof(H5DT_UINT8), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ in08 = (H5DT_UINT8 *) in->data;
+ for (i = 0; i < len; i++, in08++) {
+ if (fread((char *) in08, sizeof(H5DT_UINT8), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
case 16:
- in16 = (H5DT_UINT16 *) in->data;
- switch(in->inputClass)
- {
+ in16 = (H5DT_UINT16 *) in->data;
+ switch (in->inputClass) {
case 6: /* TEXTUIN */
- for (i = 0; i < len; i++, in16++)
- {
- if (fscanf(*strm, "%hu", in16) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in16++) {
+ if (fscanf(strm, "%hu", in16) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
case 7: /* UIN */
- for (i = 0; i < len; i++, in16++)
- {
- if (fread((char *) in16, sizeof(H5DT_UINT16), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in16++) {
+ if (fread((char *) in16, sizeof(H5DT_UINT16), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
case 32:
- in32 = (H5DT_UINT32 *) in->data;
- switch(in->inputClass)
- {
+ in32 = (H5DT_UINT32 *) in->data;
+ switch (in->inputClass) {
case 6: /* TEXTUIN */
- for (i = 0; i < len; i++, in32++)
- {
- if (fscanf(*strm, "%u", in32) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in32++) {
+ if (fscanf(strm, "%u", in32) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
case 7: /* UIN */
- for (i = 0; i < len; i++, in32++)
- {
- if (fread((char *) in32, sizeof(H5DT_UINT32), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in32++) {
+ if (fread((char *) in32, sizeof(H5DT_UINT32), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
#ifndef _WIN32
case 64:
- in64 = (H5DT_UINT64 *) in->data;
- switch(in->inputClass)
- {
+ in64 = (H5DT_UINT64 *) in->data;
+ switch (in->inputClass) {
case 6: /* TEXTUIN */
- for (i = 0; i < len; i++, in64++)
- {
- if (fscanf(*strm, "%s", buffer) < 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in64++) {
+ if (fscanf(strm, "%s", buffer) < 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ *in64 = (H5DT_UINT64) HDstrtoll(buffer, NULL, 10);
}
- *in64 = (H5DT_UINT64) HDstrtoll(buffer, NULL, 10);
- }
- break;
+ break;
case 7: /* UIN */
- for (i = 0; i < len; i++, in64++)
- {
- if (fread((char *) in64, sizeof(H5DT_UINT64), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, in64++) {
+ if (fread((char *) in64, sizeof(H5DT_UINT64), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
#endif /* ifndef _WIN32 */
default:
- (void) fprintf(stderr, "%s", err3);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err3);
+ break;
+ }
+ return (0);
}
-static int
-readFloatData(FILE **strm, struct Input *in)
+static int readFloatData(FILE *strm, struct Input *in)
{
- H5DT_FLOAT32 *fp32;
- H5DT_FLOAT64 *fp64;
+ H5DT_FLOAT32 *fp32;
+ H5DT_FLOAT64 *fp64;
- hsize_t len=1;
- hsize_t i;
- int j;
- const char *err1 = "Unable to get integer value from file.\n";
- const char *err2 = "Unrecognized input class type.\n";
- const char *err3 = "Invalid input size type.\n";
+ hsize_t len = 1;
+ hsize_t i;
+ int j;
+ const char *err1 = "Unable to get integer value from file.\n";
+ const char *err2 = "Unrecognized input class type.\n";
+ const char *err3 = "Invalid input size type.\n";
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
- switch(in->inputSize)
- {
+ switch (in->inputSize) {
case 32:
- fp32 = (H5DT_FLOAT32 *) in->data;
- switch(in->inputClass)
- {
+ fp32 = (H5DT_FLOAT32 *) in->data;
+ switch (in->inputClass) {
case 1: /* TEXTFP */
- for (i = 0; i < len; i++, fp32++)
- {
- if (fscanf(*strm, "%f", fp32) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, fp32++) {
+ if (fscanf(strm, "%f", fp32) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- fp32 = (H5DT_FLOAT32 *) in->data;
- break;
+ fp32 = (H5DT_FLOAT32 *) in->data;
+ break;
- /* same as TEXTFP */
+ /* same as TEXTFP */
case 2: /*TEXTFPE */
- for (i = 0; i < len; i++, fp32++)
- {
- if (fscanf(*strm, "%f", fp32) != 1)
- {
+ for (i = 0; i < len; i++, fp32++) {
+ if (fscanf(strm, "%f", fp32) != 1) {
(void) fprintf(stderr, "%s", err1);
return (-1);
}
@@ -786,46 +732,39 @@ readFloatData(FILE **strm, struct Input *in)
break;
case 3: /* FP */
- for (i = 0; i < len; i++, fp32++)
- {
- if (fread((char *) fp32, sizeof(H5DT_FLOAT32), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, fp32++) {
+ if (fread((char *) fp32, sizeof(H5DT_FLOAT32), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
case 64:
- fp64 = (H5DT_FLOAT64 *) in->data;
- switch(in->inputClass)
- {
+ fp64 = (H5DT_FLOAT64 *) in->data;
+ switch (in->inputClass) {
case 1: /* TEXTFP */
- for (i = 0; i < len; i++, fp64++)
- {
- if (fscanf(*strm, "%lf", fp64) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, fp64++) {
+ if (fscanf(strm, "%lf", fp64) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- fp64 = (H5DT_FLOAT64 *) in->data;
- break;
+ fp64 = (H5DT_FLOAT64 *) in->data;
+ break;
- /* same as TEXTFP */
+ /* same as TEXTFP */
case 2: /*TEXTFPE */
- for (i = 0; i < len; i++, fp64++)
- {
- if (fscanf(*strm, "%lf", fp64) != 1)
- {
+ for (i = 0; i < len; i++, fp64++) {
+ if (fscanf(strm, "%lf", fp64) != 1) {
(void) fprintf(stderr, "%s", err1);
return (-1);
}
@@ -835,31 +774,27 @@ readFloatData(FILE **strm, struct Input *in)
break;
case 3: /* FP */
- for (i = 0; i < len; i++, fp64++)
- {
- if (fread((char *) fp64, sizeof(H5DT_FLOAT64), 1, *strm) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
+ for (i = 0; i < len; i++, fp64++) {
+ if (fread((char *) fp64, sizeof(H5DT_FLOAT64), 1, strm) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
}
- }
- break;
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- break;
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ break;
default:
- (void) fprintf(stderr, "%s", err3);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err3);
+ break;
+ }
+ return (0);
}
-
-
/*-------------------------------------------------------------------------
* Function: processStrData
*
@@ -874,63 +809,66 @@ readFloatData(FILE **strm, struct Input *in)
*
*-------------------------------------------------------------------------
*/
-static int
-processStrData(FILE **strm, struct Input *in, hid_t file_id)
+static int processStrData(FILE *strm, struct Input *in, hid_t file_id)
{
- hid_t group_id, dset_id, space_id, mspace_id, type_id, handle;
+ hid_t group_id;
+ hid_t dset_id;
+ hid_t space_id;
+ hid_t mspace_id;
+ hid_t type_id;
+ hid_t handle;
hsize_t dims[1];
char str[1024];
char c;
- int i = 0, j, nlines = 0, line;
+ int i = 0;
+ int j;
+ int nlines = 0;
+ int line;
-/*-------------------------------------------------------------------------
- * get number of lines in the input file
- *-------------------------------------------------------------------------
- */
+ /*-------------------------------------------------------------------------
+ * get number of lines in the input file
+ *-------------------------------------------------------------------------
+ */
- while ( !feof( *strm ) )
- {
- c = fgetc( *strm );
+ while (!feof(strm)) {
+ c = fgetc(strm);
- if ( c == 10 ) /* eol */
- {
+ if (c == 10) { /* eol */
nlines++;
-
}
}
- if ( !nlines )
+ if (!nlines)
return 0;
/* number of records */
dims[0] = nlines;
/* rewind */
- fseek(*strm,0L,0);
+ fseek(strm, 0L, 0);
-/*-------------------------------------------------------------------------
- * read file again and generate an HDF5 dataset
- *-------------------------------------------------------------------------
- */
+ /*-------------------------------------------------------------------------
+ * read file again and generate an HDF5 dataset
+ *-------------------------------------------------------------------------
+ */
- if (( type_id = H5Tcopy(H5T_C_S1)) < 0 )
+ if ((type_id = H5Tcopy(H5T_C_S1)) < 0)
goto out;
- if ( H5Tset_size (type_id,H5T_VARIABLE) < 0 )
+ if (H5Tset_size(type_id, H5T_VARIABLE) < 0)
goto out;
/* disable error reporting */
- H5E_BEGIN_TRY
+ H5E_BEGIN_TRY
{
-
/* create parent groups */
- if(in->path.count > 1) {
+ if (in->path.count > 1) {
j = 0;
handle = file_id;
- while(j < in->path.count - 1) {
- if((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) {
+ while (j < in->path.count - 1) {
+ if ((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) {
group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- for(; j < in->path.count - 1; j++)
+ for (; j < in->path.count - 1; j++)
group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
handle = group_id;
break;
@@ -945,1446 +883,1305 @@ processStrData(FILE **strm, struct Input *in, hid_t file_id)
}
/*enable error reporting */
- } H5E_END_TRY;
+ }
+ H5E_END_TRY;
- if((space_id = H5Screate_simple(1, dims, NULL)) < 0)
+ if ((space_id = H5Screate_simple(1, dims, NULL)) < 0)
goto out;
- if((mspace_id = H5Screate(H5S_SCALAR)) < 0)
+ if ((mspace_id = H5Screate(H5S_SCALAR)) < 0)
goto out;
- if((dset_id = H5Dcreate2(handle, in->path.group[j], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ if ((dset_id = H5Dcreate2(handle, in->path.group[j], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto out;
line = 0;
- while(!feof(*strm)) {
- c = fgetc(*strm);
+ while (!feof(strm)) {
+ c = fgetc(strm);
str[i] = c;
i++;
- if(c == 10) /* eol */
- {
- char *str2 = str;
- hid_t fspace_id;
+ if (c == 10) { /* eol */
+ char *str2 = str;
+ hid_t fspace_id;
hsize_t start[1];
hsize_t count[1] = { 1 };
- str[ i-1 ] = '\0'; /* terminate string */
+ str[i - 1] = '\0'; /* terminate string */
- if (( fspace_id = H5Dget_space (dset_id)) < 0 )
+ if ((fspace_id = H5Dget_space(dset_id)) < 0)
goto out;
- start[0] = line ++ ;
+ start[0] = line++;
- if ( H5Sselect_hyperslab(fspace_id,H5S_SELECT_SET,start,NULL,count,NULL) < 0 )
+ if (H5Sselect_hyperslab(fspace_id, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
goto out;
- if ( H5Dwrite(dset_id,type_id,mspace_id,fspace_id,H5P_DEFAULT, &str2 ) < 0 )
+ if (H5Dwrite(dset_id, type_id, mspace_id, fspace_id, H5P_DEFAULT, &str2) < 0)
goto out;
- if ( H5Sclose(fspace_id) < 0 )
+ if (H5Sclose(fspace_id) < 0)
goto out;
i = 0;
- str[ 0 ] = '\0';
+ str[0] = '\0';
}
}
-
/* close */
H5Dclose(dset_id);
H5Sclose(space_id);
H5Sclose(mspace_id);
H5Tclose(type_id);
- return(0);
+ return (0);
out:
return (-1);
}
-
-static int
-allocateIntegerStorage(struct Input *in)
+static int allocateIntegerStorage(struct Input *in)
{
- hsize_t len=1;
- int j;
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "Invalid storage size for integer input data.\n";
+ hsize_t len = 1;
+ int j;
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "Invalid storage size for integer input data.\n";
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
- switch(in->inputSize)
- {
+ switch (in->inputSize) {
case 8:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT8))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT8))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 16:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT16))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT16))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 32:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT32))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT32))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 64:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT64))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT64))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err2);
+ break;
+ }
+ return (0);
}
static int allocateUIntegerStorage(struct Input *in)
{
- hsize_t len=1;
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "Invalid storage size for unsigned integer input data.\n";
- int j;
+ hsize_t len = 1;
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "Invalid storage size for unsigned integer input data.\n";
+ int j;
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
- switch(in->inputSize)
- {
+ switch (in->inputSize) {
case 8:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT8))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT8))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 16:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT16))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT16))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 32:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT32))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT32))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 64:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT64))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT64))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err2);
+ break;
+ }
+ return (0);
}
-static int
-allocateFloatStorage(struct Input *in)
+static int allocateFloatStorage(struct Input *in)
{
- hsize_t len = 1;
- int j;
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "Invalid storage size for float input data.\n";
+ hsize_t len = 1;
+ int j;
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "Invalid storage size for float input data.\n";
- for (j=0; j<in->rank;j++)
- len *= in->sizeOfDimension[j];
+ for (j = 0; j < in->rank; j++)
+ len *= in->sizeOfDimension[j];
- switch(in->inputSize)
- {
+ switch (in->inputSize) {
case 32:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT32))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT32))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
case 64:
- if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT64))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- break;
+ if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT64))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ break;
default:
- (void) fprintf(stderr, "%s", err2);
- break;
- }
- return(0);
+ (void) fprintf(stderr, "%s", err2);
+ break;
+ }
+ return (0);
}
-static int
-processConfigurationFile(char *infile, struct Input *in, FILE **strm)
+static int processConfigurationFile(char *infile, struct Input *in)
{
- char key[255];
- int kindex;
- char temp[255];
- int ival;
-
- const char *err1 = "Unable to open the configuration file: %s for reading.\n";
- const char *err2 = "Unknown keyword in configuration file: %s\n";
- const char *err3a = "PATH keyword appears twice in %s.\n";
- const char *err3b = "Error in parsing the path information from %s.\n";
- const char *err4a = "INPUT-CLASS keyword appears twice in %s.\n";
- const char *err4b = "Error in retrieving the input class from %s.\n";
- const char *err5a = "INPUT-SIZE keyword appears twice in %s.\n";
- const char *err5b = "Error in retrieving the input size from %s.\n";
- const char *err6a = "RANK keyword appears twice in %s.\n";
- const char *err6b = "Error in retrieving the rank from %s.\n";
- const char *err7a = "DIMENSION-SIZES keyword appears twice in %s.\n";
- const char *err7b = "DIMENSION-SIZES cannot appear before RANK is provided.\n";
- const char *err7c = "Error in retrieving the dimension sizes from %s.\n";
- const char *err8a = "OUTPUT-CLASS keyword appears twice in %s.\n";
- const char *err8b = "Error in retrieving the output class from %s.\n";
- const char *err9a = "OUTPUT-SIZE keyword appears twice in %s.\n";
- const char *err9b = "Error in retrieving the output size from %s.\n";
- const char *err10a = "OUTPUT-ARCHITECTURE keyword appears twice in %s.\n";
- const char *err10b = "Error in retrieving the output architecture from %s.\n";
- const char *err11a = "OUTPUT-BYTE-ORDER keyword appears twice in %s.\n";
- const char *err11b = "Error in retrieving the output byte order from %s.\n";
- const char *err12a = "CHUNKED-DIMENSION-SIZES keyword appears twice in %s.\n";
- const char *err12b = "CHUNKED-DIMENSION-SIZES cannot appear before DIMENSION-SIZES are provided.\n";
- const char *err12c = "Error in retrieving the chunked dimension sizes from %s.\n";
- const char *err13a = "COMPRESSION-TYPE keyword appears twice in %s.\n";
- const char *err13b = "Error in retrieving the compression type from %s.\n";
- const char *err14a = "COMPRESSION-PARAM keyword appears twice in %s.\n";
- const char *err14b = "Error in retrieving the compression parameter from %s.\n";
- const char *err15a = "EXTERNAL-STORAGE keyword appears twice in %s.\n";
- const char *err15b = "Error in retrieving the external storage paramters from %s.\n";
- const char *err16a = "MAXIMUM-DIMENSIONS keyword appears twice in %s.\n";
- const char *err16b = "MAXIMUM-DIMENSIONS cannot appear before DIMENSION-SIZES are provided.\n";
- const char *err16c = "Error in retrieving the maximum dimension sizes from %s.\n";
- const char *err17 = "Configuration parameters are invalid in %s.\n";
- const char *err18 = "Unable to get string value.\n";
- const char *err19 = "Unable to get integer value.\n";
-
- /* create vector to map which keywords have been found
- check vector after each keyword to check for violation
- at the end check vector to see if required fields have been provided
- process the output file according to the options
- */
-
- if ((*strm = fopen(infile, "r")) == NULL)
- {
- (void) fprintf(stderr, err1, infile);
- return (-1);
- }
-
- while (fscanf(*strm, "%s", key) == 1)
- {
- if ((kindex = mapKeywordToIndex(key)) == -1)
- {
- (void) fprintf(stderr, err2, infile);
- return (-1);
+ FILE *strm;
+ char key[255];
+ int kindex;
+ char temp[255];
+ int ival;
+
+ const char *err1 = "Unable to open the configuration file: %s for reading.\n";
+ const char *err2 = "Unknown keyword in configuration file: %s\n";
+ const char *err3a = "PATH keyword appears twice in %s.\n";
+ const char *err3b = "Error in parsing the path information from %s.\n";
+ const char *err4a = "INPUT-CLASS keyword appears twice in %s.\n";
+ const char *err4b = "Error in retrieving the input class from %s.\n";
+ const char *err5a = "INPUT-SIZE keyword appears twice in %s.\n";
+ const char *err5b = "Error in retrieving the input size from %s.\n";
+ const char *err6a = "RANK keyword appears twice in %s.\n";
+ const char *err6b = "Error in retrieving the rank from %s.\n";
+ const char *err7a = "DIMENSION-SIZES keyword appears twice in %s.\n";
+ const char *err7b = "DIMENSION-SIZES cannot appear before RANK is provided.\n";
+ const char *err7c = "Error in retrieving the dimension sizes from %s.\n";
+ const char *err8a = "OUTPUT-CLASS keyword appears twice in %s.\n";
+ const char *err8b = "Error in retrieving the output class from %s.\n";
+ const char *err9a = "OUTPUT-SIZE keyword appears twice in %s.\n";
+ const char *err9b = "Error in retrieving the output size from %s.\n";
+ const char *err10a = "OUTPUT-ARCHITECTURE keyword appears twice in %s.\n";
+ const char *err10b = "Error in retrieving the output architecture from %s.\n";
+ const char *err11a = "OUTPUT-BYTE-ORDER keyword appears twice in %s.\n";
+ const char *err11b = "Error in retrieving the output byte order from %s.\n";
+ const char *err12a = "CHUNKED-DIMENSION-SIZES keyword appears twice in %s.\n";
+ const char *err12b = "CHUNKED-DIMENSION-SIZES cannot appear before DIMENSION-SIZES are provided.\n";
+ const char *err12c = "Error in retrieving the chunked dimension sizes from %s.\n";
+ const char *err13a = "COMPRESSION-TYPE keyword appears twice in %s.\n";
+ const char *err13b = "Error in retrieving the compression type from %s.\n";
+ const char *err14a = "COMPRESSION-PARAM keyword appears twice in %s.\n";
+ const char *err14b = "Error in retrieving the compression parameter from %s.\n";
+ const char *err15a = "EXTERNAL-STORAGE keyword appears twice in %s.\n";
+ const char *err15b = "Error in retrieving the external storage paramters from %s.\n";
+ const char *err16a = "MAXIMUM-DIMENSIONS keyword appears twice in %s.\n";
+ const char *err16b = "MAXIMUM-DIMENSIONS cannot appear before DIMENSION-SIZES are provided.\n";
+ const char *err16c = "Error in retrieving the maximum dimension sizes from %s.\n";
+ const char *err17 = "Configuration parameters are invalid in %s.\n";
+ const char *err18 = "Unable to get string value.\n";
+ const char *err19 = "Unable to get integer value.\n";
+
+ /* create vector to map which keywords have been found
+ check vector after each keyword to check for violation
+ at the end check vector to see if required fields have been provided
+ process the output file according to the options
+ */
+
+ if ((strm = fopen(infile, "r")) == NULL) {
+ (void) fprintf(stderr, err1, infile);
+ return (-1);
}
- switch (kindex)
- {
- case 0: /* PATH */
- if (in->configOptionVector[PATH] == 1)
- {
- (void) fprintf(stderr, err3a, infile);
- return (-1);
- }
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err18);
- return (-1);
- }
- if (parsePathInfo(&in->path, temp) == -1)
- {
- (void) fprintf(stderr, err3b, infile);
- return (-1);
- }
- in->configOptionVector[PATH] = 1;
- break;
-
- case 1: /* INPUT-CLASS */
- if (in->configOptionVector[INPUT_CLASS] == 1)
- {
- (void) fprintf(stderr, err4a, infile);
- return (-1);
- }
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err18);
- return (-1);
- }
- if (getInputClass(in, temp) == -1)
- {
- (void) fprintf(stderr, err4b, infile);
- return (-1);
+ while (fscanf(strm, "%s", key) == 1) {
+ if ((kindex = mapKeywordToIndex(key)) == -1) {
+ (void) fprintf(stderr, err2, infile);
+ fclose(strm);
+ return (-1);
}
+ switch (kindex) {
+ case 0: /* PATH */
+ if (in->configOptionVector[PATH] == 1) {
+ (void) fprintf(stderr, err3a, infile);
+ fclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err18);
+ fclose(strm);
+ return (-1);
+ }
+ if (parsePathInfo(&in->path, temp) == -1) {
+ (void) fprintf(stderr, err3b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[PATH] = 1;
+ break;
- in->configOptionVector[INPUT_CLASS] = 1;
-
- /*set default value for output-class */
- if (in->configOptionVector[OUTPUT_CLASS] == 0)
- {
- if (in->inputClass == 0 || in->inputClass == 4)
- in->outputClass = 0;
- if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3)
- in->outputClass = 1;
- if (in->inputClass == 6 || in->inputClass == 7)
- in->outputClass = 2;
- }
- break;
+ case 1: /* INPUT-CLASS */
+ if (in->configOptionVector[INPUT_CLASS] == 1) {
+ (void) fprintf(stderr, err4a, infile);
+ fclose(strm);
+ return (-1);
+ }
- case 2: /* INPUT-SIZE */
- if (in->configOptionVector[INPUT_SIZE] == 1)
- {
- (void) fprintf(stderr, err5a, infile);
- return (-1);
- }
- if (fscanf(*strm, "%d", (&ival)) != 1)
- {
- (void) fprintf(stderr, "%s", err19);
- return (-1);
- }
- if (getInputSize(in, ival) == -1)
- {
- (void) fprintf(stderr, err5b, infile);
- return (-1);
- }
- in->configOptionVector[INPUT_SIZE] = 1;
-
- /*set default value for output-size */
- if (in->configOptionVector[OUTPUT_SIZE] == 0)
- in->outputSize = in->inputSize;
- break;
-
- case 3: /* RANK */
- if (in->configOptionVector[RANK] == 1)
- {
- (void) fprintf(stderr, err6a, infile);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err18);
+ fclose(strm);
+ return (-1);
+ }
+ if (getInputClass(in, temp) == -1) {
+ (void) fprintf(stderr, err4b, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (getRank(in, strm) == -1)
- {
- (void) fprintf(stderr, err6b, infile);
- return (-1);
- }
- in->configOptionVector[RANK] = 1;
- break;
-
- case 4: /* DIMENSION-SIZES */
- if (in->configOptionVector[DIM] == 1)
- {
- (void) fprintf(stderr, err7a, infile);
- return (-1);
- }
+ in->configOptionVector[INPUT_CLASS] = 1;
+
+ /*set default value for output-class */
+ if (in->configOptionVector[OUTPUT_CLASS] == 0) {
+ if (in->inputClass == 0 || in->inputClass == 4)
+ in->outputClass = 0;
+ if (in->inputClass == 1 || in->inputClass == 2
+ || in->inputClass == 3)
+ in->outputClass = 1;
+ if (in->inputClass == 6 || in->inputClass == 7)
+ in->outputClass = 2;
+ }
+ break;
- if (in->configOptionVector[RANK] == 0)
- {
- (void) fprintf(stderr, err7b, infile);
- return (-1);
- }
- if (getDimensionSizes(in, strm) == -1)
- {
- (void) fprintf(stderr, err7c, infile);
- return (-1);
- }
- in->configOptionVector[DIM] = 1;
- break;
-
- case 5: /* OUTPUT-CLASS */
- if (in->configOptionVector[OUTPUT_CLASS] == 1)
- {
- (void) fprintf(stderr, err8a, infile);
- return (-1);
- }
+ case 2: /* INPUT-SIZE */
+ if (in->configOptionVector[INPUT_SIZE] == 1) {
+ (void) fprintf(stderr, err5a, infile);
+ fclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) fprintf(stderr, "%s", err19);
+ fclose(strm);
+ return (-1);
+ }
+ if (getInputSize(in, ival) == -1) {
+ (void) fprintf(stderr, err5b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[INPUT_SIZE] = 1;
- if (getOutputClass(in, strm) == -1)
- {
- (void) fprintf(stderr, err8b, infile);
- return (-1);
- }
- in->configOptionVector[OUTPUT_CLASS] = 1;
- break;
-
- case 6: /* OUTPUT-SIZE */
- if (in->configOptionVector[OUTPUT_SIZE] == 1)
- {
- (void) fprintf(stderr, err9a, infile);
- return (-1);
- }
+ /*set default value for output-size */
+ if (in->configOptionVector[OUTPUT_SIZE] == 0)
+ in->outputSize = in->inputSize;
+ break;
- if (getOutputSize(in, strm) == -1)
- {
- (void) fprintf(stderr, err9b, infile);
- return (-1);
- }
- in->configOptionVector[OUTPUT_SIZE] = 1;
- break;
-
- case 7: /* OUTPUT-ARCHITECTURE */
- if (in->configOptionVector[OUTPUT_ARCH] == 1)
- {
- (void) fprintf(stderr, err10a, infile);
- return (-1);
- }
+ case 3: /* RANK */
+ if (in->configOptionVector[RANK] == 1) {
+ (void) fprintf(stderr, err6a, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (getOutputArchitecture(in, strm) == -1)
- {
- (void) fprintf(stderr, err10b, infile);
- return (-1);
- }
- in->configOptionVector[OUTPUT_ARCH] = 1;
- break;
-
- case 8: /* OUTPUT-BYTE-ORDER */
- if (in->configOptionVector[OUTPUT_B_ORDER] == 1)
- {
- (void) fprintf(stderr, err11a, infile);
- return (-1);
- }
+ if (getRank(in, strm) == -1) {
+ (void) fprintf(stderr, err6b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[RANK] = 1;
+ break;
- if (getOutputByteOrder(in, strm) == -1)
- {
- (void) fprintf(stderr, err11b, infile);
- return (-1);
- }
- in->configOptionVector[OUTPUT_B_ORDER] = 1;
- break;
-
- case 9: /* CHUNKED-DIMENSION-SIZES */
- if (in->configOptionVector[CHUNK] == 1)
- {
- (void) fprintf(stderr, err12a, infile);
- return (-1);
- }
- /* cant appear before dimension sizes have been provided */
- if (in->configOptionVector[DIM] == 0)
- {
- (void) fprintf(stderr, err12b, infile);
- return (-1);
- }
+ case 4: /* DIMENSION-SIZES */
+ if (in->configOptionVector[DIM] == 1) {
+ (void) fprintf(stderr, err7a, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (getChunkedDimensionSizes(in, strm) == -1)
- {
- (void) fprintf(stderr, err12c, infile);
- return (-1);
- }
- in->configOptionVector[CHUNK] = 1;
- break;
-
- case 10: /* COMPRESSION-TYPE */
- if (in->configOptionVector[COMPRESS] == 1)
- {
- (void) fprintf(stderr, err13a, infile);
- return (-1);
- }
+ if (in->configOptionVector[RANK] == 0) {
+ (void) fprintf(stderr, err7b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ if (getDimensionSizes(in, strm) == -1) {
+ (void) fprintf(stderr, err7c, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[DIM] = 1;
+ break;
- if (getCompressionType(in, strm) == -1)
- {
- (void) fprintf(stderr, err13b, infile);
- return (-1);
- }
- in->configOptionVector[COMPRESS] = 1;
+ case 5: /* OUTPUT-CLASS */
+ if (in->configOptionVector[OUTPUT_CLASS] == 1) {
+ (void) fprintf(stderr, err8a, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (in->configOptionVector[COMPRESS_PARAM] == 0)
- {
- if (in->compressionType == 0)
- in->compressionParam = 6; /* default value if compressionType is GZIP */
- }
- break;
+ if (getOutputClass(in, strm) == -1) {
+ (void) fprintf(stderr, err8b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_CLASS] = 1;
+ break;
- case 11: /* COMPRESSION-PARAM */
- if (in->configOptionVector[COMPRESS_PARAM] == 1)
- {
- (void) fprintf(stderr, err14a, infile);
- return (-1);
- }
+ case 6: /* OUTPUT-SIZE */
+ if (in->configOptionVector[OUTPUT_SIZE] == 1) {
+ (void) fprintf(stderr, err9a, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (getCompressionParameter(in, strm) == -1)
- {
- (void) fprintf(stderr, err14b, infile);
- return (-1);
- }
+ if (getOutputSize(in, strm) == -1) {
+ (void) fprintf(stderr, err9b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_SIZE] = 1;
+ break;
- in->configOptionVector[COMPRESS_PARAM] = 1;
+ case 7: /* OUTPUT-ARCHITECTURE */
+ if (in->configOptionVector[OUTPUT_ARCH] == 1) {
+ (void) fprintf(stderr, err10a, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (in->configOptionVector[COMPRESS] == 0)
- in->compressionType = 0;
+ if (getOutputArchitecture(in, strm) == -1) {
+ (void) fprintf(stderr, err10b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_ARCH] = 1;
+ break;
+ case 8: /* OUTPUT-BYTE-ORDER */
+ if (in->configOptionVector[OUTPUT_B_ORDER] == 1) {
+ (void) fprintf(stderr, err11a, infile);
+ fclose(strm);
+ return (-1);
+ }
- break;
+ if (getOutputByteOrder(in, strm) == -1) {
+ (void) fprintf(stderr, err11b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_B_ORDER] = 1;
+ break;
- case 12: /* EXTERNAL-STORAGE */
- if (in->configOptionVector[EXTERNAL] == 1)
- {
- (void) fprintf(stderr, err15a, infile);
- return (-1);
- }
+ case 9: /* CHUNKED-DIMENSION-SIZES */
+ if (in->configOptionVector[CHUNK] == 1) {
+ (void) fprintf(stderr, err12a, infile);
+ fclose(strm);
+ return (-1);
+ }
+ /* cant appear before dimension sizes have been provided */
+ if (in->configOptionVector[DIM] == 0) {
+ (void) fprintf(stderr, err12b, infile);
+ fclose(strm);
+ return (-1);
+ }
- if (getExternalFilename(in, strm) == -1)
- {
- (void) fprintf(stderr, err15b, infile);
- return (-1);
- }
- in->configOptionVector[EXTERNAL] = 1;
- break;
-
- case 13: /* MAXIMUM-DIMENSIONS */
- if (in->configOptionVector[EXTEND] == 1)
- {
- (void) fprintf(stderr, err16a, infile);
- return (-1);
- }
- /* cant appear before dimension sizes have been provided */
- if (in->configOptionVector[DIM] == 0)
- {
- (void) fprintf(stderr, err16b, infile);
- return (-1);
- }
- if (getMaximumDimensionSizes(in, strm) == -1)
- {
- (void) fprintf(stderr, err16c, infile);
- return (-1);
- }
- in->configOptionVector[EXTEND] = 1;
- break;
+ if (getChunkedDimensionSizes(in, strm) == -1) {
+ (void) fprintf(stderr, err12c, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[CHUNK] = 1;
+ break;
- default:
- break;
+ case 10: /* COMPRESSION-TYPE */
+ if (in->configOptionVector[COMPRESS] == 1) {
+ (void) fprintf(stderr, err13a, infile);
+ fclose(strm);
+ return (-1);
+ }
+
+ if (getCompressionType(in, strm) == -1) {
+ (void) fprintf(stderr, err13b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[COMPRESS] = 1;
+
+ if (in->configOptionVector[COMPRESS_PARAM] == 0) {
+ if (in->compressionType == 0)
+ in->compressionParam = 6; /* default value if compressionType is GZIP */
+ }
+ break;
+
+ case 11: /* COMPRESSION-PARAM */
+ if (in->configOptionVector[COMPRESS_PARAM] == 1) {
+ (void) fprintf(stderr, err14a, infile);
+ fclose(strm);
+ return (-1);
+ }
+
+ if (getCompressionParameter(in, strm) == -1) {
+ (void) fprintf(stderr, err14b, infile);
+ fclose(strm);
+ return (-1);
+ }
+
+ in->configOptionVector[COMPRESS_PARAM] = 1;
+
+ if (in->configOptionVector[COMPRESS] == 0)
+ in->compressionType = 0;
+
+ break;
+
+ case 12: /* EXTERNAL-STORAGE */
+ if (in->configOptionVector[EXTERNAL] == 1) {
+ (void) fprintf(stderr, err15a, infile);
+ fclose(strm);
+ return (-1);
+ }
+
+ if (getExternalFilename(in, strm) == -1) {
+ (void) fprintf(stderr, err15b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[EXTERNAL] = 1;
+ break;
+
+ case 13: /* MAXIMUM-DIMENSIONS */
+ if (in->configOptionVector[EXTEND] == 1) {
+ (void) fprintf(stderr, err16a, infile);
+ fclose(strm);
+ return (-1);
+ }
+ /* cant appear before dimension sizes have been provided */
+ if (in->configOptionVector[DIM] == 0) {
+ (void) fprintf(stderr, err16b, infile);
+ fclose(strm);
+ return (-1);
+ }
+ if (getMaximumDimensionSizes(in, strm) == -1) {
+ (void) fprintf(stderr, err16c, infile);
+ fclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[EXTEND] = 1;
+ break;
+
+ default:
+ break;
+ }
+ }
+ /*
+ check if keywords obtained are valid
+ if yes, return 0 else error
+ */
+
+ if (validateConfigurationParameters(in) == -1) {
+ (void) fprintf(stderr, err17, infile);
+ fclose(strm);
+ return (-1);
}
- }
- /*
- check if keywords obtained are valid
- if yes, return 0 else error
- */
-
- if (validateConfigurationParameters(in) == -1)
- {
- (void) fprintf(stderr, err17, infile);
- return (-1);
- }
- return (0);
+ fclose(strm);
+ return (0);
}
-static int
-validateConfigurationParameters(struct Input * in)
+static int validateConfigurationParameters(struct Input *in)
{
- const char *err1 = "One or more of the required fields (RANK, DIMENSION-SIZES) missing.\n";
- const char *err2 = "Cannot specify chunking or compression or extendible data sets with the external file option.\n";
- const char *err3 = "Cannot specify the compression or the extendible data sets without the chunking option.\n";
- const char *err4a = "OUTPUT-ARCHITECTURE cannot be STD if OUTPUT-CLASS is floating point (FP).\n";
- const char *err4b = "OUTPUT-ARCHITECTURE cannot be IEEE if OUTPUT-CLASS is integer (IN).\n";
- const char *err5 = "For OUTPUT-CLASS FP, valid values for OUTPUT-SIZE are (32, 64) .\n";
+ const char *err1 = "One or more of the required fields (RANK, DIMENSION-SIZES) missing.\n";
+ const char *err2 = "Cannot specify chunking or compression or extendible data sets with the external file option.\n";
+ const char *err3 = "Cannot specify the compression or the extendible data sets without the chunking option.\n";
+ const char *err4a = "OUTPUT-ARCHITECTURE cannot be STD if OUTPUT-CLASS is floating point (FP).\n";
+ const char *err4b = "OUTPUT-ARCHITECTURE cannot be IEEE if OUTPUT-CLASS is integer (IN).\n";
+ const char *err5 = "For OUTPUT-CLASS FP, valid values for OUTPUT-SIZE are (32, 64) .\n";
#ifdef _WIN32
- const char *err6 = "No support for reading 64-bit integer (INPUT-CLASS: IN, TEXTIN, UIN, TEXTUIN files\n";
+ const char *err6 = "No support for reading 64-bit integer (INPUT-CLASS: IN, TEXTIN, UIN, TEXTUIN files\n";
#endif
- /* for class STR other parameters are ignored */
- if (in->inputClass == 5) /* STR */
- return (0);
-
- if (
- (in->configOptionVector[DIM] != 1) ||
- (in->configOptionVector[RANK] != 1))
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ /* for class STR other parameters are ignored */
+ if (in->inputClass == 5) /* STR */
+ return (0);
- if (in->configOptionVector[EXTERNAL] == 1)
- {
- if ((in->configOptionVector[COMPRESS] == 1) ||
- (in->configOptionVector[CHUNK] == 1) ||
- (in->configOptionVector[EXTEND] == 1))
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
+ if ((in->configOptionVector[DIM] != 1) || (in->configOptionVector[RANK] != 1)) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
}
- }
- if ((in->configOptionVector[COMPRESS] == 1) ||
- (in->configOptionVector[EXTEND] == 1))
- {
- if (in->configOptionVector[CHUNK] != 1)
- {
- (void) fprintf(stderr, "%s", err3);
- return (-1);
+ if (in->configOptionVector[EXTERNAL] == 1) {
+ if ((in->configOptionVector[COMPRESS] == 1) || (in->configOptionVector[CHUNK] == 1) || (in->configOptionVector[EXTEND] == 1)) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
}
- }
- /* Arch cant be STD if O/p class is FP */
- if (in->outputArchitecture == 1)
- if (in->outputClass == 1)
- {
- (void) fprintf(stderr, "%s", err4a);
- return (-1);
+ if ((in->configOptionVector[COMPRESS] == 1) || (in->configOptionVector[EXTEND] == 1)) {
+ if (in->configOptionVector[CHUNK] != 1) {
+ (void) fprintf(stderr, "%s", err3);
+ return (-1);
+ }
}
- /* Arch cant be IEEE if O/p class is IN */
- if (in->outputArchitecture == 2)
- if (in->outputClass == 0)
- {
- (void) fprintf(stderr, "%s", err4b);
- return (-1);
- }
+ /* Arch cant be STD if O/p class is FP */
+ if (in->outputArchitecture == 1)
+ if (in->outputClass == 1) {
+ (void) fprintf(stderr, "%s", err4a);
+ return (-1);
+ }
- if (in->outputClass == 1)
- if(in->outputSize != 32 &&
- in->outputSize != 64 )
- {
- (void) fprintf(stderr, "%s", err5);
- return (-1);
- }
+ /* Arch cant be IEEE if O/p class is IN */
+ if (in->outputArchitecture == 2)
+ if (in->outputClass == 0) {
+ (void) fprintf(stderr, "%s", err4b);
+ return (-1);
+ }
+
+ if (in->outputClass == 1)
+ if (in->outputSize != 32 && in->outputSize != 64) {
+ (void) fprintf(stderr, "%s", err5);
+ return (-1);
+ }
#ifdef _WIN32
- if (in->inputSize == 64 && (in->inputClass == 0 || in->inputClass == 4 || in->inputClass == 6 || in->inputClass == 7) )
- {
- (void) fprintf(stderr, "%s", err6);
- return -1;
- }
+ if (in->inputSize == 64 && (in->inputClass == 0 || in->inputClass == 4 || in->inputClass == 6 || in->inputClass == 7) ) {
+ (void) fprintf(stderr, "%s", err6);
+ return -1;
+ }
#endif
- return (0);
+ return (0);
}
-static int
-mapKeywordToIndex(char *key)
+static int mapKeywordToIndex(char *key)
{
- int i;
+ int i;
- for (i=0; i<NUM_KEYS; i++)
- if (!HDstrcmp(keytable[i], key)) return i;
- return -1;
+ for (i = 0; i < NUM_KEYS; i++)
+ if (!HDstrcmp(keytable[i], key))
+ return i;
+ return -1;
}
-static int
-parsePathInfo(struct path_info *path, char *temp)
+static int parsePathInfo(struct path_info *path, char *temp)
{
- const char delimiter[] = "/";
- char *token;
- int i=0;
- const char *err1 = "Path string larger than MAX_PATH_NAME_LENGTH.\n";
-
- token = HDstrtok (temp, delimiter);
- if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH)
- {
- (void) fprintf(stderr, err1);
- return (-1);
- }
- HDstrcpy(path->group[i++],token);
-
-
- while (1)
- {
- token = HDstrtok (NULL, delimiter);
- if (token == NULL)
- break;
- if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH)
- {
- (void) fprintf(stderr, err1);
- return (-1);
+ const char delimiter[] = "/";
+ char *token;
+ int i = 0;
+ const char *err1 = "Path string larger than MAX_PATH_NAME_LENGTH.\n";
+
+ token = HDstrtok (temp, delimiter);
+ if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) {
+ (void) fprintf(stderr, err1);
+ return (-1);
}
HDstrcpy(path->group[i++],token);
- }
- path->count = i;
- return (0);
+
+ while (1) {
+ token = HDstrtok (NULL, delimiter);
+ if (token == NULL)
+ break;
+ if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) {
+ (void) fprintf(stderr, err1);
+ return (-1);
+ }
+ HDstrcpy(path->group[i++],token);
+ }
+ path->count = i;
+ return (0);
}
-static int
-parseDimensions(struct Input *in, char *strm)
+static int parseDimensions(struct Input *in, char *strm)
{
- const char delimiter[] = ",";
- char temp[255];
- char *token;
- int i=0;
- const char *err1 = "Unable to allocate dynamic memory.\n";
-
- HDstrncpy(temp, strm, sizeof(temp));
- temp[sizeof(temp)-1] = '\0';
- HDstrtok (temp, delimiter);
-
- while (1)
- {
- token = HDstrtok (NULL, delimiter);
- if (token == NULL)
- break;
- i++;
- }
- in->rank = i+1;
- if ((in->sizeOfDimension =
- (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
-
- i=0;
- HDstrncpy(temp, strm, sizeof(temp));
- temp[sizeof(temp)-1] = '\0';
- in->sizeOfDimension[i++] = HDstrtol(HDstrtok (temp, delimiter), NULL, BASE_10);
-
- while (1)
- {
- token = HDstrtok (NULL, delimiter);
- if (token == NULL)
- break;
- in->sizeOfDimension[i++] = HDstrtol(token, NULL, BASE_10);
- }
- return (0);
+ const char delimiter[] = ",";
+ char temp[255];
+ char *token;
+ int i = 0;
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+
+ HDstrncpy(temp, strm, sizeof(temp));
+ temp[sizeof(temp) - 1] = '\0';
+ HDstrtok (temp, delimiter);
+
+ while (1) {
+ token = HDstrtok (NULL, delimiter);
+ if (token == NULL)
+ break;
+ i++;
+ }
+ in->rank = i + 1;
+ if ((in->sizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+
+ i = 0;
+ HDstrncpy(temp, strm, sizeof(temp));
+ temp[sizeof(temp) - 1] = '\0';
+ in->sizeOfDimension[i++]
+ = HDstrtol(HDstrtok (temp, delimiter), NULL, BASE_10);
+
+ while (1) {
+ token = HDstrtok (NULL, delimiter);
+ if (token == NULL)
+ break;
+ in->sizeOfDimension[i++] = HDstrtol(token, NULL, BASE_10);
+ }
+ return (0);
}
-static int
-getOutputClass(struct Input *in, FILE** strm)
+static int getOutputClass(struct Input *in, FILE *strm)
{
- char temp[255];
- int kindex;
- const char *err1 = "Unable to get 'string' value.\n";
- const char *err2 = "Invalid value for output class.\n";
+ char temp[255];
+ int kindex;
+ const char *err1 = "Unable to get 'string' value.\n";
+ const char *err2 = "Invalid value for output class.\n";
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if ((kindex = OutputClassStrToInt(temp)) == -1)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ if ((kindex = OutputClassStrToInt(temp)) == -1) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
- in->outputClass = kindex;
- return (0);
+ in->outputClass = kindex;
+ return (0);
}
-static int
-OutputClassStrToInt(char *temp)
+static int OutputClassStrToInt(char *temp)
{
- int i;
- char classKeywordTable[3][15] = {
- "IN",
- "FP",
- "UIN"
- };
- for (i=0; i<3; i++)
- if (!HDstrcmp(classKeywordTable[i], temp)) return i;
-
- return -1;
+ int i;
+ char classKeywordTable[3][15] = { "IN", "FP", "UIN" };
+ for (i = 0; i < 3; i++)
+ if (!HDstrcmp(classKeywordTable[i], temp))
+ return i;
+
+ return -1;
}
- /* same as getInputSize. But defined separately for extensibility */
-static int
-getOutputSize(struct Input *in, FILE** strm)
+/* same as getInputSize. But defined separately for extensibility */
+static int getOutputSize(struct Input *in, FILE *strm)
{
- int ival;
- int i;
- int outputSizeValidValues[4] = {8,16,32,64};
- const char *err1 = "Unable to get integer value.\n";
- const char *err2 = "Invalid value for output size.\n";
-
- if (fscanf(*strm, "%d", (&ival)) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ int ival;
+ int i;
+ int outputSizeValidValues[4] = { 8, 16, 32, 64 };
+ const char *err1 = "Unable to get integer value.\n";
+ const char *err2 = "Invalid value for output size.\n";
- for (i=0; i<4; i++)
- if (outputSizeValidValues[i] == ival)
- {
- in->outputSize = ival;
- return (0);
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
}
- (void) fprintf(stderr, "%s", err2);
- return(-1);
+
+ for (i = 0; i < 4; i++)
+ if (outputSizeValidValues[i] == ival) {
+ in->outputSize = ival;
+ return (0);
+ }
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
}
-static int
-getInputClass(struct Input *in, char * temp)
+static int getInputClass(struct Input *in, char * temp)
{
- int kindex;
- const char *err1 = "Invalid value for input class.\n";
+ int kindex;
+ const char *err1 = "Invalid value for input class.\n";
- if ((kindex = InputClassStrToInt(temp)) == -1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if ((kindex = InputClassStrToInt(temp)) == -1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- in->inputClass = kindex;
- return (0);
+ in->inputClass = kindex;
+ return (0);
}
-static int
-InputClassStrToInt(char *temp)
+static int InputClassStrToInt(char *temp)
{
- int i;
- char classKeywordTable[8][15] = {
- "TEXTIN",
- "TEXTFP",
- "TEXTFPE",
- "FP",
- "IN",
- "STR",
- "TEXTUIN",
- "UIN"
- };
- for (i=0; i<8; i++)
- if (!HDstrcmp(classKeywordTable[i], temp)) return i;
- return -1;
+ int i;
+ char classKeywordTable[8][15] = { "TEXTIN", "TEXTFP", "TEXTFPE", "FP", "IN", "STR", "TEXTUIN", "UIN" };
+ for (i = 0; i < 8; i++)
+ if (!HDstrcmp(classKeywordTable[i], temp))
+ return i;
+ return -1;
}
- /* same as getOutputSize. But defined separately for extensibility */
-static int
-getInputSize(struct Input *in, int ival)
+/* same as getOutputSize. But defined separately for extensibility */
+static int getInputSize(struct Input *in, int ival)
{
- int i;
- int inputSizeValidValues[4] = {8,16,32,64};
- const char *err1 = "Invalid value for input size.\n";
-
- for (i=0; i<4; i++)
- if (inputSizeValidValues[i] == ival)
- {
- in->inputSize = ival;
- return (0);
- }
- (void) fprintf(stderr, "%s", err1);
- return(-1);
+ int i;
+ int inputSizeValidValues[4] = { 8, 16, 32, 64 };
+ const char *err1 = "Invalid value for input size.\n";
+
+ for (i = 0; i < 4; i++)
+ if (inputSizeValidValues[i] == ival) {
+ in->inputSize = ival;
+ return (0);
+ }
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
}
-static int
-getRank(struct Input *in, FILE** strm)
+static int getRank(struct Input *in, FILE *strm)
{
- int ival;
+ int ival;
- const char *err1 = "Unable to get integer value.\n";
- const char *err2 = "Invalid value for rank.\n";
+ const char *err1 = "Unable to get integer value.\n";
+ const char *err2 = "Invalid value for rank.\n";
- if (fscanf(*strm, "%d", (&ival)) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
- if (ival >=MIN_NUM_DIMENSION && ival <=MAX_NUM_DIMENSION )
- {
- in->rank = ival;
- return (0);
- }
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
+ if (ival >= MIN_NUM_DIMENSION && ival <= MAX_NUM_DIMENSION) {
+ in->rank = ival;
+ return (0);
+ }
- (void) fprintf(stderr, "%s", err2);
- return(-1);
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
}
- /* same as getChunkedDimensionSizes. But defined separately for extensibility */
-static int
-getDimensionSizes(struct Input *in, FILE **strm)
+/* same as getChunkedDimensionSizes. But defined separately for extensibility */
+static int getDimensionSizes(struct Input *in, FILE *strm)
{
- int ival;
- int i=0;
+ int ival;
+ int i = 0;
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "No. of dimensions for which dimension sizes provided is not equal to provided rank.\n";
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "No. of dimensions for which dimension sizes provided is not equal to provided rank.\n";
- if ((in->sizeOfDimension =
- (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if ((in->sizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- while (fscanf(*strm, "%d", (&ival)) == 1)
- in->sizeOfDimension[i++] = ival;
+ while (fscanf(strm, "%d", (&ival)) == 1)
+ in->sizeOfDimension[i++] = ival;
- if (in->rank != i)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- return (0);
+ if (in->rank != i) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ return (0);
}
- /* same as getDimensionSizes. But defined separately for extensibility */
-static int
-getChunkedDimensionSizes(struct Input *in, FILE **strm)
+/* same as getDimensionSizes. But defined separately for extensibility */
+static int getChunkedDimensionSizes(struct Input *in, FILE *strm)
{
- int ival;
- int i=0;
-
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "No. of dimensions for which chunked dimension sizes provided is not equal to provided rank.\n";
- const char *err3 = "The CHUNKED-DIMENSION-SIZES cannot exceed the sizes of DIMENSION-SIZES\n";
+ int ival;
+ int i = 0;
- if ((in->sizeOfChunk =
- (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "No. of dimensions for which chunked dimension sizes provided is not equal to provided rank.\n";
+ const char *err3 = "The CHUNKED-DIMENSION-SIZES cannot exceed the sizes of DIMENSION-SIZES\n";
- while (fscanf(*strm, "%d", (&ival)) == 1)
- in->sizeOfChunk[i++] = ival;
+ if ((in->sizeOfChunk = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if (in->rank != i)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ while (fscanf(strm, "%d", (&ival)) == 1)
+ in->sizeOfChunk[i++] = ival;
- for (i=0; i<in->rank; i++)
- if (in->sizeOfChunk[i] > in->sizeOfDimension[i])
- {
- (void) fprintf(stderr, "%s", err3);
- return (-1);
+ if (in->rank != i) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
}
- return (0);
+
+ for (i = 0; i < in->rank; i++)
+ if (in->sizeOfChunk[i] > in->sizeOfDimension[i]) {
+ (void) fprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ return (0);
}
-static int
-getMaximumDimensionSizes(struct Input *in, FILE **strm)
+static int getMaximumDimensionSizes(struct Input *in, FILE *strm)
{
- int ival;
- int i=0;
+ int ival;
+ int i = 0;
- const char *err1 = "Unable to allocate dynamic memory.\n";
- const char *err2 = "No. of dimensions for which maximum dimension sizes provided is not equal to provided rank.\n";
- const char *err3 = "The MAXIMUM-DIMENSIONS cannot be less than the sizes of DIMENSION-SIZES. Exception: can be -1 to indicate unlimited size\n";
+ const char *err1 = "Unable to allocate dynamic memory.\n";
+ const char *err2 = "No. of dimensions for which maximum dimension sizes provided is not equal to provided rank.\n";
+ const char *err3 = "The MAXIMUM-DIMENSIONS cannot be less than the sizes of DIMENSION-SIZES. Exception: can be -1 to indicate unlimited size\n";
- if ((in->maxsizeOfDimension =
- (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
-
- while (fscanf(*strm, "%d", (&ival)) == 1)
- {
- if (ival == -1)
- in->maxsizeOfDimension[i++] = H5S_UNLIMITED;
- else
- in->maxsizeOfDimension[i++] = ival;
- }
-
- if (in->rank != i)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ if ((in->maxsizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- for (i=0; i<in->rank; i++)
- {
- if (in->maxsizeOfDimension[i] != H5S_UNLIMITED)
- if (in->maxsizeOfDimension[i] < in->sizeOfDimension[i])
- {
- (void) fprintf(stderr, "%s", err3);
+ while (fscanf(strm, "%d", (&ival)) == 1) {
+ if (ival == -1)
+ in->maxsizeOfDimension[i++] = H5S_UNLIMITED;
+ else
+ in->maxsizeOfDimension[i++] = ival;
+ }
+
+ if (in->rank != i) {
+ (void) fprintf(stderr, "%s", err2);
return (-1);
- }
- }
- return (0);
+ }
+
+ for (i = 0; i < in->rank; i++) {
+ if (in->maxsizeOfDimension[i] != H5S_UNLIMITED)
+ if (in->maxsizeOfDimension[i] < in->sizeOfDimension[i]) {
+ (void) fprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ }
+ return (0);
}
-static int
-getOutputArchitecture(struct Input *in, FILE** strm)
+static int getOutputArchitecture(struct Input *in, FILE *strm)
{
- char temp[255];
- int kindex;
- const char *err1 = "Unable to get 'string' value.\n";
- const char *err2 = "Invalid value for output architecture.\n";
+ char temp[255];
+ int kindex;
+ const char *err1 = "Unable to get 'string' value.\n";
+ const char *err2 = "Invalid value for output architecture.\n";
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if ((kindex = OutputArchStrToInt(temp)) == -1)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ if ((kindex = OutputArchStrToInt(temp)) == -1) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
- in->outputArchitecture = kindex;
- return (0);
+ in->outputArchitecture = kindex;
+ return (0);
}
-static int
-OutputArchStrToInt(char *temp)
+static int OutputArchStrToInt(char *temp)
{
- int i;
- char outputArchKeywordTable[8][15] = {
- "NATIVE",
- "STD",
- "IEEE",
- "INTEL",
- "CRAY",
- "MIPS",
- "ALPHA",
- "UNIX"
- };
- for (i=0; i<8; i++)
- if (!HDstrcmp(outputArchKeywordTable[i], temp)) return i;
- return -1;
+ int i;
+ char outputArchKeywordTable[8][15] = { "NATIVE", "STD", "IEEE", "INTEL",
+ "CRAY", "MIPS", "ALPHA", "UNIX" };
+ for (i = 0; i < 8; i++)
+ if (!HDstrcmp(outputArchKeywordTable[i], temp))
+ return i;
+ return -1;
}
-static int
-getOutputByteOrder(struct Input *in, FILE** strm)
+static int getOutputByteOrder(struct Input *in, FILE *strm)
{
- char temp[255];
- int kindex;
- const char *err1 = "Unable to get 'string' value.\n";
- const char *err2 = "Invalid value for output byte-order.\n";
+ char temp[255];
+ int kindex;
+ const char *err1 = "Unable to get 'string' value.\n";
+ const char *err2 = "Invalid value for output byte-order.\n";
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if ((kindex = OutputByteOrderStrToInt(temp)) == -1)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ if ((kindex = OutputByteOrderStrToInt(temp)) == -1) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
- in->outputByteOrder = kindex;
- return (0);
+ in->outputByteOrder = kindex;
+ return (0);
}
-static int
-OutputByteOrderStrToInt(char *temp)
+static int OutputByteOrderStrToInt(char *temp)
{
- int i;
- char outputByteOrderKeywordTable[2][15] = {
- "BE",
- "LE"
- };
- for (i=0; i<2; i++)
- if (!HDstrcmp(outputByteOrderKeywordTable[i], temp)) return i;
- return -1;
+ int i;
+ char outputByteOrderKeywordTable[2][15] = { "BE", "LE" };
+ for (i = 0; i < 2; i++)
+ if (!HDstrcmp(outputByteOrderKeywordTable[i], temp))
+ return i;
+ return -1;
}
-static int
-getCompressionType(struct Input *in, FILE** strm)
+static int getCompressionType(struct Input *in, FILE *strm)
{
- char temp[255];
- int kindex;
- const char *err1 = "Unable to get 'string' value.\n";
- const char *err2 = "Invalid value for compression.\n";
+ char temp[255];
+ int kindex;
+ const char *err1 = "Unable to get 'string' value.\n";
+ const char *err2 = "Invalid value for compression.\n";
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if ((kindex = CompressionTypeStrToInt(temp)) == -1)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
+ if ((kindex = CompressionTypeStrToInt(temp)) == -1) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
- in->compressionType = kindex;
- return (0);
+ in->compressionType = kindex;
+ return (0);
}
-static int
-CompressionTypeStrToInt(char *temp)
+static int CompressionTypeStrToInt(char *temp)
{
- /* currently supports only GZIP */
- /* can be extended by adding fields to the table */
-
- int i;
- char CompressionTypeKeywordTable[1][15] = {
- "GZIP"
- };
- for (i=0; i<1; i++)
- if (!HDstrcmp(CompressionTypeKeywordTable[i], temp)) return i;
- return -1;
+ /* currently supports only GZIP */
+ /* can be extended by adding fields to the table */
+
+ int i;
+ char CompressionTypeKeywordTable[1][15] = { "GZIP" };
+ for (i = 0; i < 1; i++)
+ if (!HDstrcmp(CompressionTypeKeywordTable[i], temp))
+ return i;
+ return -1;
}
-static int
-getCompressionParameter(struct Input *in, FILE** strm)
+static int getCompressionParameter(struct Input *in, FILE *strm)
{
- /* currently supports only GZIP */
- /* can be extended by adding more values to COMPRESSION-TYPE and
- handling the paramters here by adding more cases */
-
- int ival;
- const char *err1 = "Unable to get integer value.\n";
- const char *err2 = "Invalid value for compression paramter.\n";
- const char *err3 = "Unsupported Compression Type.\n";
-
- switch (in->compressionType)
- {
- case 0: /* GZIP */
- if (fscanf(*strm, "%d", (&ival)) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ /* currently supports only GZIP */
+ /* can be extended by adding more values to COMPRESSION-TYPE and */
+ /* handling the paramters here by adding more cases */
+
+ int ival;
+ const char *err1 = "Unable to get integer value.\n";
+ const char *err2 = "Invalid value for compression paramter.\n";
+ const char *err3 = "Unsupported Compression Type.\n";
+
+ switch (in->compressionType) {
+ case 0: /* GZIP */
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- if (ival <0 || ival > 9)
- {
- (void) fprintf(stderr, "%s", err2);
- return (-1);
- }
- in->compressionParam = ival;
- return (0);
+ if (ival < 0 || ival > 9) {
+ (void) fprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->compressionParam = ival;
+ return (0);
default:
- (void) fprintf(stderr, "%s", err3);
- return (-1);
- }
+ (void) fprintf(stderr, "%s", err3);
+ return (-1);
+ }
}
-static int
-getExternalFilename(struct Input *in, FILE** strm)
+static int getExternalFilename(struct Input *in, FILE *strm)
{
- char temp[255];
- const char *err1 = "Unable to get 'string' value.\n";
+ char temp[255];
+ const char *err1 = "Unable to get 'string' value.\n";
- if (fscanf(*strm, "%s", temp) != 1)
- {
- (void) fprintf(stderr, "%s", err1);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) fprintf(stderr, "%s", err1);
+ return (-1);
+ }
- in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char));
- (void) HDstrcpy(in->externFilename, temp);
- return (0);
+ in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char));
+ (void) HDstrcpy(in->externFilename, temp);
+ return (0);
}
-void
-setDefaultValues(struct Input *in, int count)
+void setDefaultValues(struct Input *in, int count)
{
- int i;
- char temp[255];
- char num[255];
-
- in->inputClass = 3; /* FP */
- in->inputSize = 32;
- in->outputClass = 1; /* FP */
- in->outputSize = 32;
- in->rank = 0;
- in->path.count = 1;
-
- HDstrcpy(temp, "dataset");
- sprintf(num, "%d", count);
- HDstrcat(temp, num);
- HDstrcpy(in->path.group[0], temp);
-
- in->outputArchitecture = 0; /* NATIVE */
- in->outputByteOrder = -1; /* use default */
- in->compressionType = 0; /* GZIP */
- for (i=0; i<NUM_KEYS; i++)
- in->configOptionVector[i] = 0;
+ int i;
+ char temp[255];
+ char num[255];
+
+ in->inputClass = 3; /* FP */
+ in->inputSize = 32;
+ in->outputClass = 1; /* FP */
+ in->outputSize = 32;
+ in->rank = 0;
+ in->path.count = 1;
+
+ HDstrcpy(temp, "dataset");
+ sprintf(num, "%d", count);
+ HDstrcat(temp, num);
+ HDstrcpy(in->path.group[0], temp);
+
+ in->outputArchitecture = 0; /* NATIVE */
+ in->outputByteOrder = -1; /* use default */
+ in->compressionType = 0; /* GZIP */
+ for (i = 0; i < NUM_KEYS; i++)
+ in->configOptionVector[i] = 0;
}
-hid_t
-createOutputDataType(struct Input *in)
+hid_t createOutputDataType(struct Input *in)
{
- hid_t new_type = (-1);
- const char *err1 = "Invalid value for output class.\n";
+ hid_t new_type = (-1);
+ const char *err1 = "Invalid value for output class.\n";
- switch (in->outputClass)
- {
+ switch (in->outputClass) {
case 0:
- switch (in->outputArchitecture)
- {
+ switch (in->outputArchitecture) {
case 0: /* NATIVE */
- switch(in->outputSize)
- {
+ switch (in->outputSize) {
case 8:
- new_type = H5Tcopy (H5T_NATIVE_CHAR);
- break;
+ new_type = H5Tcopy(H5T_NATIVE_CHAR);
+ break;
case 16:
- new_type = H5Tcopy (H5T_NATIVE_SHORT);
- break;
+ new_type = H5Tcopy(H5T_NATIVE_SHORT);
+ break;
case 32:
- new_type = H5Tcopy (H5T_NATIVE_INT);
- break;
+ new_type = H5Tcopy(H5T_NATIVE_INT);
+ break;
case 64:
- new_type = H5Tcopy (H5T_NATIVE_LLONG);
- break;
- }
- switch(in->outputByteOrder)
- {
- case -1: /* default */
+ new_type = H5Tcopy(H5T_NATIVE_LLONG);
break;
- case 0:
- H5Tset_order (new_type,H5T_ORDER_BE);
+ }
+ switch (in->outputByteOrder) {
+ case -1: /* default */
+ break;
+ case 0:
+ H5Tset_order(new_type, H5T_ORDER_BE);
break;
- case 1:
- H5Tset_order (new_type,H5T_ORDER_LE);
+ case 1:
+ H5Tset_order(new_type, H5T_ORDER_LE);
break;
- }
- break;
+ }
+ break;
case 1: /* STD */
- switch(in->outputSize)
- {
+ switch (in->outputSize) {
case 8:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_STD_I8BE);
- break;
+ new_type = H5Tcopy(H5T_STD_I8BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_STD_I8LE);
+ new_type = H5Tcopy(H5T_STD_I8LE);
+ break;
+ }
break;
- }
- break;
case 16:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_STD_I16BE);
- break;
+ new_type = H5Tcopy(H5T_STD_I16BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_STD_I16LE);
+ new_type = H5Tcopy(H5T_STD_I16LE);
+ break;
+ }
break;
- }
- break;
case 32:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_STD_I32BE);
- break;
+ new_type = H5Tcopy(H5T_STD_I32BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_STD_I32LE);
+ new_type = H5Tcopy(H5T_STD_I32LE);
+ break;
+ }
break;
- }
- break;
case 64:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_STD_I64BE);
- break;
+ new_type = H5Tcopy(H5T_STD_I64BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_STD_I64LE);
+ new_type = H5Tcopy(H5T_STD_I64LE);
+ break;
+ }
break;
- }
+ }
break;
- }
- break;
}
break;
case 1:
- switch (in->outputArchitecture)
- {
+ switch (in->outputArchitecture) {
case 0:
- switch(in->outputSize)
- {
+ switch (in->outputSize) {
case 32:
- new_type = H5Tcopy (H5T_NATIVE_FLOAT);
- break;
+ new_type = H5Tcopy(H5T_NATIVE_FLOAT);
+ break;
case 64:
- new_type = H5Tcopy (H5T_NATIVE_DOUBLE);
- break;
- }
- switch(in->outputByteOrder)
- {
- case -1: /* DEFAULT */
+ new_type = H5Tcopy(H5T_NATIVE_DOUBLE);
break;
- case 0:
- H5Tset_order (new_type,H5T_ORDER_BE);
+ }
+ switch (in->outputByteOrder) {
+ case -1: /* DEFAULT */
+ break;
+ case 0:
+ H5Tset_order(new_type, H5T_ORDER_BE);
break;
- case 1:
- H5Tset_order (new_type,H5T_ORDER_LE);
+ case 1:
+ H5Tset_order(new_type, H5T_ORDER_LE);
break;
- }
- break;
+ }
+ break;
case 1:
- /* STD not supported for float */
- break;
+ /* STD not supported for float */
+ break;
case 2:
- switch(in->outputSize)
- {
+ switch (in->outputSize) {
case 32:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_IEEE_F32BE);
- break;
+ new_type = H5Tcopy(H5T_IEEE_F32BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_IEEE_F32LE);
+ new_type = H5Tcopy(H5T_IEEE_F32LE);
+ break;
+ }
break;
- }
- break;
case 64:
- switch(in->outputByteOrder)
- {
+ switch (in->outputByteOrder) {
case -1:
case 0:
- new_type = H5Tcopy (H5T_IEEE_F64BE);
- break;
+ new_type = H5Tcopy(H5T_IEEE_F64BE);
+ break;
case 1:
- new_type = H5Tcopy (H5T_IEEE_F64LE);
+ new_type = H5Tcopy(H5T_IEEE_F64LE);
+ break;
+ }
break;
- }
+ }
break;
- }
- break;
- }
- break;
+ }
+ break;
case 2:
- switch (in->outputArchitecture)
- {
- case 0:
- switch(in->outputSize)
- {
- case 8:
- new_type = H5Tcopy (H5T_NATIVE_UCHAR);
- break;
+ switch (in->outputArchitecture) {
+ case 0:
+ switch (in->outputSize) {
+ case 8:
+ new_type = H5Tcopy(H5T_NATIVE_UCHAR);
+ break;
- case 16:
- new_type = H5Tcopy (H5T_NATIVE_USHORT);
- break;
+ case 16:
+ new_type = H5Tcopy(H5T_NATIVE_USHORT);
+ break;
- case 32:
- new_type = H5Tcopy (H5T_NATIVE_UINT);
- break;
+ case 32:
+ new_type = H5Tcopy(H5T_NATIVE_UINT);
+ break;
- case 64:
- new_type = H5Tcopy (H5T_NATIVE_ULLONG);
- break;
+ case 64:
+ new_type = H5Tcopy(H5T_NATIVE_ULLONG);
+ break;
}
- switch(in->outputByteOrder)
- {
- case -1: /* Default */
+ switch (in->outputByteOrder) {
+ case -1: /* Default */
break;
- case 0:
- H5Tset_order (new_type,H5T_ORDER_BE);
+ case 0:
+ H5Tset_order(new_type, H5T_ORDER_BE);
break;
- case 1:
- H5Tset_order (new_type,H5T_ORDER_LE);
+ case 1:
+ H5Tset_order(new_type, H5T_ORDER_LE);
break;
- }
+ }
break;
- case 1:
- switch(in->outputSize)
- {
- case 8:
- switch(in->outputByteOrder)
- {
- case -1:
- case 0:
- new_type = H5Tcopy (H5T_STD_U8BE);
- break;
-
- case 1:
- new_type = H5Tcopy (H5T_STD_U8LE);
- break;
+ case 1:
+ switch (in->outputSize) {
+ case 8:
+ switch (in->outputByteOrder) {
+ case -1:
+ case 0:
+ new_type = H5Tcopy(H5T_STD_U8BE);
+ break;
+
+ case 1:
+ new_type = H5Tcopy(H5T_STD_U8LE);
+ break;
}
break;
- case 16:
- switch(in->outputByteOrder)
- {
- case -1:
- case 0:
- new_type = H5Tcopy (H5T_STD_U16BE);
- break;
-
- case 1:
- new_type = H5Tcopy (H5T_STD_U16LE);
- break;
+ case 16:
+ switch (in->outputByteOrder) {
+ case -1:
+ case 0:
+ new_type = H5Tcopy(H5T_STD_U16BE);
+ break;
+
+ case 1:
+ new_type = H5Tcopy(H5T_STD_U16LE);
+ break;
}
break;
- case 32:
- switch(in->outputByteOrder)
- {
- case -1:
- case 0:
- new_type = H5Tcopy (H5T_STD_U32BE);
- break;
-
- case 1:
- new_type = H5Tcopy (H5T_STD_U32LE);
- break;
+ case 32:
+ switch (in->outputByteOrder) {
+ case -1:
+ case 0:
+ new_type = H5Tcopy(H5T_STD_U32BE);
+ break;
+
+ case 1:
+ new_type = H5Tcopy(H5T_STD_U32LE);
+ break;
}
break;
- case 64:
- switch(in->outputByteOrder)
- {
- case -1:
- case 0:
- new_type = H5Tcopy (H5T_STD_U64BE);
- break;
-
- case 1:
- new_type = H5Tcopy (H5T_STD_U64LE);
- break;
+ case 64:
+ switch (in->outputByteOrder) {
+ case -1:
+ case 0:
+ new_type = H5Tcopy(H5T_STD_U64BE);
+ break;
+
+ case 1:
+ new_type = H5Tcopy(H5T_STD_U64LE);
+ break;
}
break;
}
break;
- case 2:
+ case 2:
/* IEEE not supported for INT */
- break;
+ break;
}
@@ -2397,48 +2194,44 @@ createOutputDataType(struct Input *in)
return new_type;
}
-hid_t
-createInputDataType(struct Input *in)
+hid_t createInputDataType(struct Input *in)
{
- hid_t new_type = (-1);
- const char *err1 = "Invalid value for input class.\n";
+ hid_t new_type = (-1);
+ const char *err1 = "Invalid value for input class.\n";
- switch (in->inputClass)
- {
+ switch (in->inputClass) {
case 0:
case 4:
- switch(in->inputSize)
- {
- case 8:
- new_type = H5Tcopy (H5T_NATIVE_CHAR);
- break;
-
- case 16:
- new_type = H5Tcopy (H5T_NATIVE_SHORT);
- break;
-
- case 32:
- new_type = H5Tcopy (H5T_NATIVE_INT);
- break;
-
- case 64:
- new_type = H5Tcopy (H5T_NATIVE_LLONG);
- break;
+ switch (in->inputSize) {
+ case 8:
+ new_type = H5Tcopy(H5T_NATIVE_CHAR);
+ break;
+
+ case 16:
+ new_type = H5Tcopy(H5T_NATIVE_SHORT);
+ break;
+
+ case 32:
+ new_type = H5Tcopy(H5T_NATIVE_INT);
+ break;
+
+ case 64:
+ new_type = H5Tcopy(H5T_NATIVE_LLONG);
+ break;
}
break;
case 1:
case 2:
case 3:
- switch(in->inputSize)
- {
- case 32:
- new_type = H5Tcopy (H5T_NATIVE_FLOAT);
- break;
-
- case 64:
- new_type = H5Tcopy (H5T_NATIVE_DOUBLE);
- break;
+ switch (in->inputSize) {
+ case 32:
+ new_type = H5Tcopy(H5T_NATIVE_FLOAT);
+ break;
+
+ case 64:
+ new_type = H5Tcopy(H5T_NATIVE_DOUBLE);
+ break;
}
break;
@@ -2447,23 +2240,22 @@ createInputDataType(struct Input *in)
case 6:
case 7:
- switch(in->inputSize)
- {
- case 8:
- new_type = H5Tcopy (H5T_NATIVE_UCHAR);
- break;
-
- case 16:
- new_type = H5Tcopy (H5T_NATIVE_USHORT);
- break;
-
- case 32:
- new_type = H5Tcopy (H5T_NATIVE_UINT);
- break;
-
- case 64:
- new_type = H5Tcopy (H5T_NATIVE_ULLONG);
- break;
+ switch (in->inputSize) {
+ case 8:
+ new_type = H5Tcopy(H5T_NATIVE_UCHAR);
+ break;
+
+ case 16:
+ new_type = H5Tcopy(H5T_NATIVE_USHORT);
+ break;
+
+ case 32:
+ new_type = H5Tcopy(H5T_NATIVE_UINT);
+ break;
+
+ case 64:
+ new_type = H5Tcopy(H5T_NATIVE_ULLONG);
+ break;
}
break;
@@ -2471,161 +2263,159 @@ createInputDataType(struct Input *in)
(void) fprintf(stderr, "%s", err1);
return (-1);
}
- return new_type;
+ return new_type;
}
-static int
-process(struct Options *opt)
+static int process(struct Options *opt)
{
- struct Input *in;
- hid_t file_id, group_id, handle;
- hid_t dataset, dataspace = (-1);
- FILE *strm, *extfile;
- hid_t intype, outtype;
- hid_t proplist;
- hsize_t numOfElements = 1;
- int j,k;
-
- const char *err1 = "Error creating HDF output file: %s.\n";
- const char *err2 = "Error in processing the configuration file: %s.\n";
- const char *err3 = "Error in reading the input file: %s.\n";
- const char *err4 = "Error in creating or opening external file.\n";
- const char *err5 = "Error in creating the output data set. Dataset with the same name may exist at the specified path\n";
- const char *err6 = "Error in writing the output data set.\n";
-
- H5E_BEGIN_TRY {
- if ((file_id = H5Fopen(opt->outfile, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) {
- if ((file_id = H5Fcreate(opt->outfile, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) == FAIL)
- {
- (void) fprintf(stderr, err1, opt->outfile);
- return (-1);
- }
- }
- } H5E_END_TRY;
+ struct Input *in;
+ FILE *extfile;
+ hid_t file_id;
+ hid_t group_id;
+ hid_t handle;
+ hid_t dataset;
+ hid_t dataspace = (-1);
+ hid_t intype;
+ hid_t outtype;
+ hid_t proplist;
+ hsize_t numOfElements = 1;
+ int j;
+ int k;
+
+ const char *err1 = "Error creating HDF output file: %s.\n";
+ const char *err2 = "Error in processing the configuration file: %s.\n";
+ const char *err3 = "Error in reading the input file: %s.\n";
+ const char *err4 = "Error in creating or opening external file.\n";
+ const char *err5 = "Error in creating the output data set. Dataset with the same name may exist at the specified path\n";
+ const char *err6 = "Error in writing the output data set.\n";
- for (k = 0; k < opt->fcount; k++)
- {
- in = &(opt->infiles[k].in);
- if (opt->infiles[k].config == 1)
+ H5E_BEGIN_TRY
{
- if (processConfigurationFile(opt->infiles[k].configfile, in, &strm) == -1)
- {
- (void) fprintf(stderr, err2, opt->infiles[k].configfile);
- return (-1);
+ if ((file_id = H5Fopen(opt->outfile, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) {
+ if ((file_id = H5Fcreate(opt->outfile, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) == FAIL) {
+ (void) fprintf(stderr, err1, opt->outfile);
+ return (-1);
+ }
}
}
-
- if (processDataFile(opt->infiles[k].datafile, in, &strm, file_id ) == -1)
- {
- (void) fprintf(stderr, err3, opt->infiles[k].datafile);
- return (-1);
- }
-
- if (in->inputClass != 5) /* STR */
- {
-
- for (j=0; j<in->rank;j++)
- numOfElements *= in->sizeOfDimension[j];
-
- /* disable error reporting */
- H5E_BEGIN_TRY {
- /* create parent groups */
- if(in->path.count > 1) {
- j = 0;
- handle = file_id;
- while(j < in->path.count - 1) {
- if((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) {
- group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- for (; j < in->path.count - 1; j++)
- group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- handle = group_id;
- break;
- }
- handle = group_id;
- j++;
+ H5E_END_TRY;
+
+ for (k = 0; k < opt->fcount; k++) {
+ in = &(opt->infiles[k].in);
+ if (opt->infiles[k].config == 1) {
+ if (processConfigurationFile(opt->infiles[k].configfile, in) == -1) {
+ (void) fprintf(stderr, err2, opt->infiles[k].configfile);
+ return (-1);
}
}
- else {
- handle = file_id;
- j=0;
- }
- /*enable error reporting */
- } H5E_END_TRY;
+ if (processDataFile(opt->infiles[k].datafile, in, file_id) == -1) {
+ (void) fprintf(stderr, err3, opt->infiles[k].datafile);
+ return (-1);
+ }
- /*create data type */
- intype = createInputDataType(in);
- outtype = createOutputDataType(in);
+ if (in->inputClass != 5) { /* STR */
+ for (j = 0; j < in->rank; j++)
+ numOfElements *= in->sizeOfDimension[j];
- /* create property list */
- proplist = H5Pcreate (H5P_DATASET_CREATE);
- if (in->configOptionVector[CHUNK] == 1)
- {
- H5Pset_layout (proplist, H5D_CHUNKED);
- /* not reqd chunking is implied if set_chunk is used */
- H5Pset_chunk (proplist, in->rank, in->sizeOfChunk);
- }
+ /* disable error reporting */
+ H5E_BEGIN_TRY
+ {
+ /* create parent groups */
+ if (in->path.count > 1) {
+ j = 0;
+ handle = file_id;
+ while (j < in->path.count - 1) {
+ if ((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) {
+ group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ for (; j < in->path.count - 1; j++)
+ group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ handle = group_id;
+ break;
+ }
+ handle = group_id;
+ j++;
+ }
+ }
+ else {
+ handle = file_id;
+ j = 0;
+ }
- if (in->configOptionVector[COMPRESS] == 1)
- {
- H5Pset_deflate (proplist, (unsigned) in->compressionParam);
- }
+ /*enable error reporting */
+ }
+ H5E_END_TRY;
+
+ /*create data type */
+ intype = createInputDataType(in);
+ outtype = createOutputDataType(in);
+
+ /* create property list */
+ proplist = H5Pcreate(H5P_DATASET_CREATE);
+ if (in->configOptionVector[CHUNK] == 1) {
+ H5Pset_layout(proplist, H5D_CHUNKED);
+ /* not reqd chunking is implied if set_chunk is used */
+ H5Pset_chunk(proplist, in->rank, in->sizeOfChunk);
+ }
- if (in->configOptionVector[EXTERNAL] == 1)
- {
- /* creating the external file if it doesnt exist */
- if ((extfile = HDfopen(in->externFilename, "ab")) == NULL)
- {
- (void) fprintf(stderr, "%s", err4);
- H5Pclose(proplist);
- H5Sclose(dataspace);
- H5Fclose(file_id);
- return (-1);
- }
- HDfclose(extfile);
- H5Pset_external (proplist, in->externFilename, (off_t)0, numOfElements * in->inputSize / 8);
- }
+ if (in->configOptionVector[COMPRESS] == 1) {
+ H5Pset_deflate(proplist, (unsigned) in->compressionParam);
+ }
- /* create dataspace */
- if(in->configOptionVector[EXTEND] == 1)
- dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, in->maxsizeOfDimension);
- else
- dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, NULL);
+ if (in->configOptionVector[EXTERNAL] == 1) {
+ /* creating the external file if it doesnt exist */
+ if ((extfile = HDfopen(in->externFilename, "ab")) == NULL) {
+ (void) fprintf(stderr, "%s", err4);
+ H5Pclose(proplist);
+ H5Sclose(dataspace);
+ H5Fclose(file_id);
+ return (-1);
+ }
+ HDfclose(extfile);
+ H5Pset_external(proplist, in->externFilename, (off_t) 0, numOfElements * in->inputSize / 8);
+ }
- /* disable error reporting */
- H5E_BEGIN_TRY {
- /* create data set */
- if((dataset = H5Dcreate2(handle, in->path.group[j], outtype, dataspace, H5P_DEFAULT, proplist, H5P_DEFAULT)) < 0) {
- (void)fprintf(stderr, "%s", err5);
- H5Pclose(proplist);
- H5Sclose(dataspace);
- H5Fclose(file_id);
- return (-1);
- }
+ /* create dataspace */
+ if (in->configOptionVector[EXTEND] == 1)
+ dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, in->maxsizeOfDimension);
+ else
+ dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, NULL);
- /*enable error reporting */
- } H5E_END_TRY;
-
- /* write dataset */
- if(H5Dwrite(dataset, intype, H5S_ALL, H5S_ALL, H5P_DEFAULT, (VOIDP)in->data) < 0) {
- (void) fprintf(stderr, "%s", err6);
- H5Dclose(dataset);
- H5Pclose(proplist);
- H5Sclose(dataspace);
- H5Fclose(file_id);
- return (-1);
- }
+ /* disable error reporting */
+ H5E_BEGIN_TRY
+ {
+ /* create data set */
+ if ((dataset = H5Dcreate2(handle, in->path.group[j], outtype, dataspace, H5P_DEFAULT, proplist, H5P_DEFAULT)) < 0) {
+ (void) fprintf(stderr, "%s", err5);
+ H5Pclose(proplist);
+ H5Sclose(dataspace);
+ H5Fclose(file_id);
+ return (-1);
+ }
- H5Dclose(dataset);
- H5Pclose(proplist);
- H5Sclose(dataspace);
- }
+ /*enable error reporting */
+ }
+ H5E_END_TRY;
+
+ /* write dataset */
+ if (H5Dwrite(dataset, intype, H5S_ALL, H5S_ALL, H5P_DEFAULT, (VOIDP) in->data) < 0) {
+ (void) fprintf(stderr, "%s", err6);
+ H5Dclose(dataset);
+ H5Pclose(proplist);
+ H5Sclose(dataspace);
+ H5Fclose(file_id);
+ return (-1);
+ }
- } /* STR */
+ H5Dclose(dataset);
+ H5Pclose(proplist);
+ H5Sclose(dataspace);
+ }
+ } /* STR */
- H5Fclose(file_id);
- return (0);
+ H5Fclose(file_id);
+ return (0);
}
/*
@@ -2636,294 +2426,409 @@ process(struct Options *opt)
* Print a helpful summary of command usage and features.
*/
-void
-help(char *name)
+void help(char *name)
{
- (void) fprintf(stdout, "Name:\n\n");
- (void) fprintf(stdout, "\t%s\n\n", name);
- (void) fprintf(stdout, "\t TOOL NAME:\n");
- (void) fprintf(stdout, "\t %s\n", name);
- (void) fprintf(stdout, "\t SYNTAX:\n");
- (void) fprintf(stdout, "\t %s -h[elp], OR\n", name);
- (void) fprintf(stdout, "\t %s <infile> -c[onfig] <configfile> [<infile> -c[config] <configfile>...]", name);
- (void) fprintf(stdout, "\t\t\t\t -o[utfile] <outfile>\n\n");
- (void) fprintf(stdout, "\t PURPOSE:\n");
- (void) fprintf(stdout, "\t To convert data stored in one or more ASCII or binary files\n");
- (void) fprintf(stdout, "\t into one or more datasets (in accordance with the \n");
- (void) fprintf(stdout, "\t user-specified type and storage properties) in an existing \n");
- (void) fprintf(stdout, "\t or new HDF5 file.\n\n");
- (void) fprintf(stdout, "\t DESCRIPTION:\n");
- (void) fprintf(stdout, "\t The primary objective of the utility is to convert floating\n");
- (void) fprintf(stdout, "\t point or integer data stored in ASCII text or binary form \n");
- (void) fprintf(stdout, "\t into a data-set according to the type and storage properties\n");
- (void) fprintf(stdout, "\t specified by the user. The utility can also accept ASCII\n");
- (void) fprintf(stdout, "\t text files and store the contents in a compact form as an\n");
- (void) fprintf(stdout, "\t array of one-dimensional strings.\n\n");
- (void) fprintf(stdout, "\t The input data to be written as a data-set can be provided\n");
- (void) fprintf(stdout, "\t to the utility in one of the following forms:\n");
- (void) fprintf(stdout, "\t 1. ASCII text file with numeric data (floating point or \n");
- (void) fprintf(stdout, "\t integer data). \n");
- (void) fprintf(stdout, "\t 2. Binary file with native floating point data (32-bit or \n");
- (void) fprintf(stdout, "\t 64-bit) \n");
- (void) fprintf(stdout, "\t 3. Binary file with native integer (signed or unsigned)\n");
- (void) fprintf(stdout, "\t data (8-bit or 16-bit or 32-bit or 64-bit). \n");
- (void) fprintf(stdout, "\t 4. ASCII text file containing strings (text data).\n");
- (void) fprintf(stdout, "\t \n");
- (void) fprintf(stdout, "\t Every input file is associated with a configuration file \n");
- (void) fprintf(stdout, "\t also provided as an input to the utility. (See Section \n");
- (void) fprintf(stdout, "\t \"CONFIGURATION FILE\" to know how it is to be organized).\n");
- (void) fprintf(stdout, "\t The class, size and dimensions of the input data is \n");
- (void) fprintf(stdout, "\t specified in this configuration file. A point to note is\n");
- (void) fprintf(stdout, "\t that the floating point data in the ASCII text file may be\n");
- (void) fprintf(stdout, "\t organized in the fixed floating form (for example 323.56)\n");
- (void) fprintf(stdout, "\t or in a scientific notation (for example 3.23E+02). A \n");
- (void) fprintf(stdout, "\t different input-class specification is to be used for both\n");
- (void) fprintf(stdout, "\t forms.\n\n");
- (void) fprintf(stdout, "\t The utility extracts the input data from the input file \n");
- (void) fprintf(stdout, "\t according to the specified parameters and saves it into \n");
- (void) fprintf(stdout, "\t an H5 dataset. \n\n");
- (void) fprintf(stdout, "\t The user can specify output type and storage properties in \n");
- (void) fprintf(stdout, "\t the configuration file. The user is requited to specify the \n");
- (void) fprintf(stdout, "\t path of the dataset. If the groups in the path leading to \n");
- (void) fprintf(stdout, "\t the data-set do not exist, the groups will be created by the\n");
- (void) fprintf(stdout, "\t utility. If no group is specified, the dataset will be\n");
- (void) fprintf(stdout, "\t created under the root group.\n\n");
- (void) fprintf(stdout, "\t In addition to the name, the user is also required to \n");
- (void) fprintf(stdout, "\t provide the class and size of output data to be written to \n");
- (void) fprintf(stdout, "\t the dataset and may optionally specify the output-architecure,\n");
- (void) fprintf(stdout, "\t and the output-byte-order. If output-architecture is not \n");
- (void) fprintf(stdout, "\t specified the default is NATIVE. Output-byte-orders are fixed\n");
- (void) fprintf(stdout, "\t for some architectures and may be specified only if output-\n");
- (void) fprintf(stdout, "\t architecture is IEEE, UNIX or STD.\n\n");
- (void) fprintf(stdout, "\t Also, layout and other storage properties such as \n");
- (void) fprintf(stdout, "\t compression, external storage and extendible data-sets may be\n");
- (void) fprintf(stdout, "\t optionally specified. The layout and storage properties \n");
- (void) fprintf(stdout, "\t denote how raw data is to be organized on the disk. If these \n");
- (void) fprintf(stdout, "\t options are not specified the default is Contiguous layout \n");
- (void) fprintf(stdout, "\t and storage.\n\n");
- (void) fprintf(stdout, "\t The dataset can be organized in any of the following ways:\n");
- (void) fprintf(stdout, "\t 1. Contiguous.\n");
- (void) fprintf(stdout, "\t 2. Chunked.\n");
- (void) fprintf(stdout, "\t 3. External Storage File (has to be contiguous)\n");
- (void) fprintf(stdout, "\t 4. Extendible data sets (has to be chunked)\n");
- (void) fprintf(stdout, "\t 5. Compressed. (has to be chunked)\n");
- (void) fprintf(stdout, "\t 6. Compressed & Extendible (has to be chunked)\n\n");
- (void) fprintf(stdout, "\t If the user wants to store raw data in a non-HDF file then \n");
- (void) fprintf(stdout, "\t the external storage file option is to be used and the name \n");
- (void) fprintf(stdout, "\t of the file is to be specified. \n\n");
- (void) fprintf(stdout, "\t If the user wants the dimensions of the data-set to be\n");
- (void) fprintf(stdout, "\t unlimited, the extendible data set option can be chosen. \n\n");
- (void) fprintf(stdout, "\t The user may also specify the type of compression and the \n");
- (void) fprintf(stdout, "\t level to which the data set must be compresses by setting \n");
- (void) fprintf(stdout, "\t the compressed option.\n\n");
- (void) fprintf(stdout, "\t SYNOPSIS:\n");
- (void) fprintf(stdout, "\t h5import -h[elp], OR\n");
- (void) fprintf(stdout, "\t h5import <infile> -c[onfig] <configfile> \
+ (void) fprintf(stdout, "Name:\n\n");
+ (void) fprintf(stdout, "\t%s\n\n", name);
+ (void) fprintf(stdout, "\t TOOL NAME:\n");
+ (void) fprintf(stdout, "\t %s\n", name);
+ (void) fprintf(stdout, "\t SYNTAX:\n");
+ (void) fprintf(stdout, "\t %s -h[elp], OR\n", name);
+ (void) fprintf(stdout,
+ "\t %s <infile> -c[onfig] <configfile> [<infile> -c[config] <configfile>...]", name);
+ (void) fprintf(stdout, "\t\t\t\t -o[utfile] <outfile>\n\n");
+ (void) fprintf(stdout, "\t PURPOSE:\n");
+ (void) fprintf(stdout,
+ "\t To convert data stored in one or more ASCII or binary files\n");
+ (void) fprintf(stdout,
+ "\t into one or more datasets (in accordance with the \n");
+ (void) fprintf(stdout,
+ "\t user-specified type and storage properties) in an existing \n");
+ (void) fprintf(stdout, "\t or new HDF5 file.\n\n");
+ (void) fprintf(stdout, "\t DESCRIPTION:\n");
+ (void) fprintf(stdout,
+ "\t The primary objective of the utility is to convert floating\n");
+ (void) fprintf(stdout,
+ "\t point or integer data stored in ASCII text or binary form \n");
+ (void) fprintf(stdout,
+ "\t into a data-set according to the type and storage properties\n");
+ (void) fprintf(stdout,
+ "\t specified by the user. The utility can also accept ASCII\n");
+ (void) fprintf(stdout,
+ "\t text files and store the contents in a compact form as an\n");
+ (void) fprintf(stdout, "\t array of one-dimensional strings.\n\n");
+ (void) fprintf(stdout,
+ "\t The input data to be written as a data-set can be provided\n");
+ (void) fprintf(stdout, "\t to the utility in one of the following forms:\n");
+ (void) fprintf(stdout,
+ "\t 1. ASCII text file with numeric data (floating point or \n");
+ (void) fprintf(stdout, "\t integer data). \n");
+ (void) fprintf(stdout,
+ "\t 2. Binary file with native floating point data (32-bit or \n");
+ (void) fprintf(stdout, "\t 64-bit) \n");
+ (void) fprintf(stdout,
+ "\t 3. Binary file with native integer (signed or unsigned)\n");
+ (void) fprintf(stdout, "\t data (8-bit or 16-bit or 32-bit or 64-bit). \n");
+ (void) fprintf(stdout,
+ "\t 4. ASCII text file containing strings (text data).\n");
+ (void) fprintf(stdout, "\t \n");
+ (void) fprintf(stdout,
+ "\t Every input file is associated with a configuration file \n");
+ (void) fprintf(stdout,
+ "\t also provided as an input to the utility. (See Section \n");
+ (void) fprintf(stdout,
+ "\t \"CONFIGURATION FILE\" to know how it is to be organized).\n");
+ (void) fprintf(stdout,
+ "\t The class, size and dimensions of the input data is \n");
+ (void) fprintf(stdout,
+ "\t specified in this configuration file. A point to note is\n");
+ (void) fprintf(stdout,
+ "\t that the floating point data in the ASCII text file may be\n");
+ (void) fprintf(stdout,
+ "\t organized in the fixed floating form (for example 323.56)\n");
+ (void) fprintf(stdout,
+ "\t or in a scientific notation (for example 3.23E+02). A \n");
+ (void) fprintf(stdout,
+ "\t different input-class specification is to be used for both\n");
+ (void) fprintf(stdout, "\t forms.\n\n");
+ (void) fprintf(stdout,
+ "\t The utility extracts the input data from the input file \n");
+ (void) fprintf(stdout,
+ "\t according to the specified parameters and saves it into \n");
+ (void) fprintf(stdout, "\t an H5 dataset. \n\n");
+ (void) fprintf(stdout,
+ "\t The user can specify output type and storage properties in \n");
+ (void) fprintf(stdout,
+ "\t the configuration file. The user is requited to specify the \n");
+ (void) fprintf(stdout,
+ "\t path of the dataset. If the groups in the path leading to \n");
+ (void) fprintf(stdout,
+ "\t the data-set do not exist, the groups will be created by the\n");
+ (void) fprintf(stdout,
+ "\t utility. If no group is specified, the dataset will be\n");
+ (void) fprintf(stdout, "\t created under the root group.\n\n");
+ (void) fprintf(stdout,
+ "\t In addition to the name, the user is also required to \n");
+ (void) fprintf(stdout,
+ "\t provide the class and size of output data to be written to \n");
+ (void) fprintf(stdout,
+ "\t the dataset and may optionally specify the output-architecure,\n");
+ (void) fprintf(stdout,
+ "\t and the output-byte-order. If output-architecture is not \n");
+ (void) fprintf(stdout,
+ "\t specified the default is NATIVE. Output-byte-orders are fixed\n");
+ (void) fprintf(stdout,
+ "\t for some architectures and may be specified only if output-\n");
+ (void) fprintf(stdout, "\t architecture is IEEE, UNIX or STD.\n\n");
+ (void) fprintf(stdout,
+ "\t Also, layout and other storage properties such as \n");
+ (void) fprintf(stdout,
+ "\t compression, external storage and extendible data-sets may be\n");
+ (void) fprintf(stdout,
+ "\t optionally specified. The layout and storage properties \n");
+ (void) fprintf(stdout,
+ "\t denote how raw data is to be organized on the disk. If these \n");
+ (void) fprintf(stdout,
+ "\t options are not specified the default is Contiguous layout \n");
+ (void) fprintf(stdout, "\t and storage.\n\n");
+ (void) fprintf(stdout,
+ "\t The dataset can be organized in any of the following ways:\n");
+ (void) fprintf(stdout, "\t 1. Contiguous.\n");
+ (void) fprintf(stdout, "\t 2. Chunked.\n");
+ (void) fprintf(stdout,
+ "\t 3. External Storage File (has to be contiguous)\n");
+ (void) fprintf(stdout,
+ "\t 4. Extendible data sets (has to be chunked)\n");
+ (void) fprintf(stdout, "\t 5. Compressed. (has to be chunked)\n");
+ (void) fprintf(stdout,
+ "\t 6. Compressed & Extendible (has to be chunked)\n\n");
+ (void) fprintf(stdout,
+ "\t If the user wants to store raw data in a non-HDF file then \n");
+ (void) fprintf(stdout,
+ "\t the external storage file option is to be used and the name \n");
+ (void) fprintf(stdout, "\t of the file is to be specified. \n\n");
+ (void) fprintf(stdout,
+ "\t If the user wants the dimensions of the data-set to be\n");
+ (void) fprintf(stdout,
+ "\t unlimited, the extendible data set option can be chosen. \n\n");
+ (void) fprintf(stdout,
+ "\t The user may also specify the type of compression and the \n");
+ (void) fprintf(stdout,
+ "\t level to which the data set must be compresses by setting \n");
+ (void) fprintf(stdout, "\t the compressed option.\n\n");
+ (void) fprintf(stdout, "\t SYNOPSIS:\n");
+ (void) fprintf(stdout, "\t h5import -h[elp], OR\n");
+ (void) fprintf( stdout,
+ "\t h5import <infile> -c[onfig] <configfile> \
[<infile> -c[config] <confile2>...] -o[utfile] <outfile>\n\n");
- (void) fprintf(stdout, "\t -h[elp]:\n");
- (void) fprintf(stdout, "\t Prints this summary of usage, and exits.\n\n");
- (void) fprintf(stdout, "\t <infile(s)>:\n");
- (void) fprintf(stdout, "\t Name of the Input file(s), containing a \n");
- (void) fprintf(stdout, "\t single n-dimensional floating point or integer array \n");
- (void) fprintf(stdout, "\t in either ASCII text, native floating point(32-bit \n");
- (void) fprintf(stdout, "\t or 64-bit) or native integer(8-bit or 16-bit or \n");
- (void) fprintf(stdout, "\t 32-bit or 64-bit). Data to be specified in the order\n");
- (void) fprintf(stdout, "\t of fastest changing dimensions first.\n\n");
- (void) fprintf(stdout, "\t -c[config] <configfile>:\n");
- (void) fprintf(stdout, "\t Every input file should be associated with a \n");
- (void) fprintf(stdout, "\t configuration file and this is done by the -c option.\n");
- (void) fprintf(stdout, "\t <configfile> is the name of the configuration file.\n");
- (void) fprintf(stdout, "\t (See Section \"CONFIGURATION FILE\")\n\n");
- (void) fprintf(stdout, "\t -o[utfile] <outfile>:\n");
- (void) fprintf(stdout, "\t Name of the HDF5 output file. Data from one or more \n");
- (void) fprintf(stdout, "\t input files are stored as one or more data sets in \n");
- (void) fprintf(stdout, "\t <outfile>. The output file may be an existing file or \n");
- (void) fprintf(stdout, "\t it maybe new in which case it will be created.\n\n\n");
- (void) fprintf(stdout, "\t CONFIGURATION FILE:\n");
- (void) fprintf(stdout, "\t The configuration file is an ASCII text file and must be \n");
- (void) fprintf(stdout, "\t organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n");
- (void) fprintf(stdout, "\t line.\n\n");
- (void) fprintf(stdout, "\t The configuration file may have the following keywords each \n");
- (void) fprintf(stdout, "\t followed by an acceptable value.\n\n");
- (void) fprintf(stdout, "\t Required KEYWORDS:\n");
- (void) fprintf(stdout, "\t PATH\n");
- (void) fprintf(stdout, "\t INPUT-CLASS\n");
- (void) fprintf(stdout, "\t INPUT-SIZE\n");
- (void) fprintf(stdout, "\t RANK\n");
- (void) fprintf(stdout, "\t DIMENSION-SIZES\n");
- (void) fprintf(stdout, "\t OUTPUT-CLASS\n");
- (void) fprintf(stdout, "\t OUTPUT-SIZE\n\n");
- (void) fprintf(stdout, "\t Optional KEYWORDS:\n");
- (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE\n");
- (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n");
- (void) fprintf(stdout, "\t COMPRESSION-TYPE\n");
- (void) fprintf(stdout, "\t COMPRESSION-PARAM\n");
- (void) fprintf(stdout, "\t EXTERNAL-STORAGE\n");
- (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS\n\n\n");
- (void) fprintf(stdout, "\t Values for keywords:\n");
- (void) fprintf(stdout, "\t PATH:\n");
- (void) fprintf(stdout, "\t Strings separated by spaces to represent\n");
- (void) fprintf(stdout, "\t the path of the data-set. If the groups in\n");
- (void) fprintf(stdout, "\t the path do no exist, they will be created. \n");
- (void) fprintf(stdout, "\t For example,\n");
- (void) fprintf(stdout, "\t PATH grp1/grp2/dataset1\n");
- (void) fprintf(stdout, "\t PATH: keyword\n");
- (void) fprintf(stdout, "\t grp1: group under the root. If\n");
- (void) fprintf(stdout, "\t non-existent will be created.\n");
- (void) fprintf(stdout, "\t grp2: group under grp1. If \n");
- (void) fprintf(stdout, "\t non-existent will be created \n");
- (void) fprintf(stdout, "\t under grp1.\n");
- (void) fprintf(stdout, "\t dataset1: the name of the data-set \n");
- (void) fprintf(stdout, "\t to be created.\n\n");
- (void) fprintf(stdout, "\t INPUT-CLASS:\n");
- (void) fprintf(stdout, "\t String denoting the type of input data.\n");
- (void) fprintf(stdout, "\t (\"TEXTIN\", \"TEXTFP\", \"FP\", \"IN\", \n");
- (void) fprintf(stdout, "\t \"STR\", \"TEXTUIN\", \"UIN\"). \n");
- (void) fprintf(stdout, "\t INPUT-CLASS \"TEXTIN\" denotes an ASCII text \n");
- (void) fprintf(stdout, "\t file with signed integer data in ASCII form,\n");
- (void) fprintf(stdout, "\t INPUT-CLASS \"TEXTUIN\" denotes an ASCII text \n");
- (void) fprintf(stdout, "\t file with unsigned integer data in ASCII form,\n");
- (void) fprintf(stdout, "\t \"TEXTFP\" denotes an ASCII text file containing\n");
- (void) fprintf(stdout, "\t floating point data in the fixed notation\n");
- (void) fprintf(stdout, "\t (325.34),\n");
- (void) fprintf(stdout, "\t \"FP\" denotes a floating point binary file,\n");
- (void) fprintf(stdout, "\t \"IN\" denotes a signed integer binary file,\n");
- (void) fprintf(stdout, "\t \"UIN\" denotes an unsigned integer binary file,\n");
- (void) fprintf(stdout, "\t & \"STR\" denotes an ASCII text file the \n");
- (void) fprintf(stdout, "\t contents of which should be stored as an 1-D \n");
- (void) fprintf(stdout, "\t array of strings.\n");
- (void) fprintf(stdout, "\t If INPUT-CLASS is \"STR\", then RANK, \n");
- (void) fprintf(stdout, "\t DIMENSION-SIZES, OUTPUT-CLASS, OUTPUT-SIZE, \n");
- (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE and OUTPUT-BYTE-ORDER \n");
- (void) fprintf(stdout, "\t will be ignored.\n\n\n");
- (void) fprintf(stdout, "\t INPUT-SIZE:\n");
- (void) fprintf(stdout, "\t Integer denoting the size of the input data \n");
- (void) fprintf(stdout, "\t (8, 16, 32, 64). \n\n");
- (void) fprintf(stdout, "\t For floating point,\n");
- (void) fprintf(stdout, "\t INPUT-SIZE can be 32 or 64.\n");
- (void) fprintf(stdout, "\t For integers (signed and unsigned)\n");
- (void) fprintf(stdout, "\t INPUT-SIZE can be 8, 16, 32 or 64.\n\n");
- (void) fprintf(stdout, "\t RANK:\n");
- (void) fprintf(stdout, "\t Integer denoting the number of dimensions.\n\n");
- (void) fprintf(stdout, "\t DIMENSION-SIZES:\n");
- (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n");
- (void) fprintf(stdout, "\t dimension sizes for the no. of dimensions \n");
- (void) fprintf(stdout, "\t determined by rank.\n\n");
- (void) fprintf(stdout, "\t OUTPUT-CLASS:\n");
- (void) fprintf(stdout, "\t String dentoting data type of the dataset to \n");
- (void) fprintf(stdout, "\t be written (\"IN\",\"FP\", \"UIN\")\n\n");
- (void) fprintf(stdout, "\t OUTPUT-SIZE:\n");
- (void) fprintf(stdout, "\t Integer denoting the size of the data in the \n");
- (void) fprintf(stdout, "\t output dataset to be written.\n");
- (void) fprintf(stdout, "\t If OUTPUT-CLASS is \"FP\", OUTPUT-SIZE can be \n");
- (void) fprintf(stdout, "\t 32 or 64.\n");
- (void) fprintf(stdout, "\t If OUTPUT-CLASS is \"IN\" or \"UIN\", OUTPUT-SIZE\n");
- (void) fprintf(stdout, "\t can be 8, 16, 32 or 64.\n\n");
- (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE:\n");
- (void) fprintf(stdout, "\t STRING denoting the type of output \n");
- (void) fprintf(stdout, "\t architecture. Can accept the following values\n");
- (void) fprintf(stdout, "\t STD\n");
- (void) fprintf(stdout, "\t IEEE\n");
- (void) fprintf(stdout, "\t INTEL\n");
- (void) fprintf(stdout, "\t CRAY\n");
- (void) fprintf(stdout, "\t MIPS\n");
- (void) fprintf(stdout, "\t ALPHA\n");
- (void) fprintf(stdout, "\t NATIVE (default)\n");
- (void) fprintf(stdout, "\t UNIX\n\n");
- (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER:\n");
- (void) fprintf(stdout, "\t String denoting the output-byte-order. Ignored\n");
- (void) fprintf(stdout, "\t if the OUTPUT-ARCHITECTURE is not specified or\n");
- (void) fprintf(stdout, "\t if it is IEEE, UNIX or STD. Can accept the \n");
- (void) fprintf(stdout, "\t following values.\n");
- (void) fprintf(stdout, "\t BE (default)\n");
- (void) fprintf(stdout, "\t LE\n\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES:\n");
- (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n");
- (void) fprintf(stdout, "\t dimension sizes of the chunk for the no. of \n");
- (void) fprintf(stdout, "\t dimensions determined by rank. Required field\n");
- (void) fprintf(stdout, "\t to denote that the dataset will be stored with\n");
- (void) fprintf(stdout, "\t chunked storage. If this field is absent the\n");
- (void) fprintf(stdout, "\t dataset will be stored with contiguous storage.\n\n");
- (void) fprintf(stdout, "\t COMPRESSION-TYPE:\n");
- (void) fprintf(stdout, "\t String denoting the type of compression to be\n");
- (void) fprintf(stdout, "\t used with the chunked storage. Requires the\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES to be specified. The only \n");
- (void) fprintf(stdout, "\t currently supported compression method is GZIP. \n");
- (void) fprintf(stdout, "\t Will accept the following value\n");
- (void) fprintf(stdout, "\t GZIP\n\n");
- (void) fprintf(stdout, "\t COMPRESSION-PARAM:\n");
- (void) fprintf(stdout, "\t Integer used to denote compression level and \n");
- (void) fprintf(stdout, "\t this option is to be always specified when \n");
- (void) fprintf(stdout, "\t the COMPRESSION-TYPE option is specified. The\n");
- (void) fprintf(stdout, "\t values are applicable only to GZIP \n");
- (void) fprintf(stdout, "\t compression.\n");
- (void) fprintf(stdout, "\t Value 1-9: The level of Compression. \n");
- (void) fprintf(stdout, "\t 1 will result in the fastest \n");
- (void) fprintf(stdout, "\t compression while 9 will result in \n");
- (void) fprintf(stdout, "\t the best compression ratio. The default\n");
- (void) fprintf(stdout, "\t level of compression is 6.\n\n");
- (void) fprintf(stdout, "\t EXTERNAL-STORAGE:\n");
- (void) fprintf(stdout, "\t String to denote the name of the non-HDF5 file \n");
- (void) fprintf(stdout, "\t to store data to. Cannot be used if CHUNKED-\n");
- (void) fprintf(stdout, "\t DIMENSIONS or COMPRESSION-TYPE or EXTENDIBLE-\n");
- (void) fprintf(stdout, "\t DATASET is specified.\n");
- (void) fprintf(stdout, "\t Value <external-filename>: the name of the \n");
- (void) fprintf(stdout, "\t external file as a string to be used.\n\n");
- (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS:\n");
- (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n");
- (void) fprintf(stdout, "\t maximum dimension sizes of all the \n");
- (void) fprintf(stdout, "\t dimensions determined by rank. Requires the\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES to be specified. A value of \n");
- (void) fprintf(stdout, "\t -1 for any dimension implies UNLIMITED \n");
- (void) fprintf(stdout, "\t DIMENSION size for that particular dimension.\n\n");
- (void) fprintf(stdout, "\t EXAMPLES:\n");
- (void) fprintf(stdout, "\t 1. Configuration File may look like:\n\n");
- (void) fprintf(stdout, "\t PATH work h5 pkamat First-set\n");
- (void) fprintf(stdout, "\t INPUT-CLASS TEXTFP\n");
- (void) fprintf(stdout, "\t RANK 3\n");
- (void) fprintf(stdout, "\t DIMENSION-SIZES 5 2 4\n");
- (void) fprintf(stdout, "\t OUTPUT-CLASS FP\n");
- (void) fprintf(stdout, "\t OUTPUT-SIZE 64\n");
- (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE IEEE\n");
- (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER LE\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 \n\n");
- (void) fprintf(stdout, "\t The above configuration will accept a floating point array \n");
- (void) fprintf(stdout, "\t (5 x 2 x 4) in an ASCII file with the rank and dimension sizes \n");
- (void) fprintf(stdout, "\t specified and will save it in a chunked data-set (of pattern \n");
- (void) fprintf(stdout, "\t 2 X 2 X 2) of 64-bit floating point in the little-endian order \n");
- (void) fprintf(stdout, "\t and IEEE architecture. The dataset will be stored at\n");
- (void) fprintf(stdout, "\t \"/work/h5/pkamat/First-set\"\n\n");
- (void) fprintf(stdout, "\t 2. Another configuration could be:\n\n");
- (void) fprintf(stdout, "\t PATH Second-set\n");
- (void) fprintf(stdout, "\t INPUT-CLASS IN \n");
- (void) fprintf(stdout, "\t RANK 5\n");
- (void) fprintf(stdout, "\t DIMENSION-SIZES 6 3 5 2 4\n");
- (void) fprintf(stdout, "\t OUTPUT-CLASS IN\n");
- (void) fprintf(stdout, "\t OUTPUT-SIZE 32\n");
- (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 2 2\n");
- (void) fprintf(stdout, "\t EXTENDIBLE-DATASET 1 3 \n");
- (void) fprintf(stdout, "\t COMPRESSION-TYPE GZIP\n");
- (void) fprintf(stdout, "\t COMPRESSION-PARAM 7\n\n\n");
- (void) fprintf(stdout, "\t The above configuration will accept an integer array \n");
- (void) fprintf(stdout, "\t (6 X 3 X 5 x 2 x 4) in a binary file with the rank and \n");
- (void) fprintf(stdout, "\t dimension sizes specified and will save it in a chunked data-set\n");
- (void) fprintf(stdout, "\t (of pattern 2 X 2 X 2 X 2 X 2) of 32-bit floating point in \n");
- (void) fprintf(stdout, "\t native format (as output-architecture is not specified). The \n");
- (void) fprintf(stdout, "\t first and the third dimension will be defined as unlimited. The \n");
- (void) fprintf(stdout, "\t data-set will be compressed using GZIP and a compression level \n");
- (void) fprintf(stdout, "\t of 7.\n");
- (void) fprintf(stdout, "\t The dataset will be stored at \"/Second-set\"\n\n");
- return;
+ (void) fprintf(stdout, "\t -h[elp]:\n");
+ (void) fprintf(stdout,
+ "\t Prints this summary of usage, and exits.\n\n");
+ (void) fprintf(stdout, "\t <infile(s)>:\n");
+ (void) fprintf(stdout,
+ "\t Name of the Input file(s), containing a \n");
+ (void) fprintf(stdout,
+ "\t single n-dimensional floating point or integer array \n");
+ (void) fprintf(stdout,
+ "\t in either ASCII text, native floating point(32-bit \n");
+ (void) fprintf(stdout,
+ "\t or 64-bit) or native integer(8-bit or 16-bit or \n");
+ (void) fprintf(stdout,
+ "\t 32-bit or 64-bit). Data to be specified in the order\n");
+ (void) fprintf(stdout, "\t of fastest changing dimensions first.\n\n");
+ (void) fprintf(stdout, "\t -c[config] <configfile>:\n");
+ (void) fprintf(stdout,
+ "\t Every input file should be associated with a \n");
+ (void) fprintf(stdout,
+ "\t configuration file and this is done by the -c option.\n");
+ (void) fprintf(stdout,
+ "\t <configfile> is the name of the configuration file.\n");
+ (void) fprintf(stdout, "\t (See Section \"CONFIGURATION FILE\")\n\n");
+ (void) fprintf(stdout, "\t -o[utfile] <outfile>:\n");
+ (void) fprintf(stdout,
+ "\t Name of the HDF5 output file. Data from one or more \n");
+ (void) fprintf(stdout,
+ "\t input files are stored as one or more data sets in \n");
+ (void) fprintf(stdout,
+ "\t <outfile>. The output file may be an existing file or \n");
+ (void) fprintf(stdout,
+ "\t it maybe new in which case it will be created.\n\n\n");
+ (void) fprintf(stdout, "\t CONFIGURATION FILE:\n");
+ (void) fprintf(stdout,
+ "\t The configuration file is an ASCII text file and must be \n");
+ (void) fprintf(stdout,
+ "\t organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n");
+ (void) fprintf(stdout, "\t line.\n\n");
+ (void) fprintf(stdout,
+ "\t The configuration file may have the following keywords each \n");
+ (void) fprintf(stdout, "\t followed by an acceptable value.\n\n");
+ (void) fprintf(stdout, "\t Required KEYWORDS:\n");
+ (void) fprintf(stdout, "\t PATH\n");
+ (void) fprintf(stdout, "\t INPUT-CLASS\n");
+ (void) fprintf(stdout, "\t INPUT-SIZE\n");
+ (void) fprintf(stdout, "\t RANK\n");
+ (void) fprintf(stdout, "\t DIMENSION-SIZES\n");
+ (void) fprintf(stdout, "\t OUTPUT-CLASS\n");
+ (void) fprintf(stdout, "\t OUTPUT-SIZE\n\n");
+ (void) fprintf(stdout, "\t Optional KEYWORDS:\n");
+ (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE\n");
+ (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER\n");
+ (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n");
+ (void) fprintf(stdout, "\t COMPRESSION-TYPE\n");
+ (void) fprintf(stdout, "\t COMPRESSION-PARAM\n");
+ (void) fprintf(stdout, "\t EXTERNAL-STORAGE\n");
+ (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS\n\n\n");
+ (void) fprintf(stdout, "\t Values for keywords:\n");
+ (void) fprintf(stdout, "\t PATH:\n");
+ (void) fprintf(stdout, "\t Strings separated by spaces to represent\n");
+ (void) fprintf(stdout, "\t the path of the data-set. If the groups in\n");
+ (void) fprintf(stdout,
+ "\t the path do no exist, they will be created. \n");
+ (void) fprintf(stdout, "\t For example,\n");
+ (void) fprintf(stdout, "\t PATH grp1/grp2/dataset1\n");
+ (void) fprintf(stdout, "\t PATH: keyword\n");
+ (void) fprintf(stdout, "\t grp1: group under the root. If\n");
+ (void) fprintf(stdout, "\t non-existent will be created.\n");
+ (void) fprintf(stdout, "\t grp2: group under grp1. If \n");
+ (void) fprintf(stdout, "\t non-existent will be created \n");
+ (void) fprintf(stdout, "\t under grp1.\n");
+ (void) fprintf(stdout, "\t dataset1: the name of the data-set \n");
+ (void) fprintf(stdout, "\t to be created.\n\n");
+ (void) fprintf(stdout, "\t INPUT-CLASS:\n");
+ (void) fprintf(stdout, "\t String denoting the type of input data.\n");
+ (void) fprintf(stdout, "\t (\"TEXTIN\", \"TEXTFP\", \"FP\", \"IN\", \n");
+ (void) fprintf(stdout, "\t \"STR\", \"TEXTUIN\", \"UIN\"). \n");
+ (void) fprintf(stdout,
+ "\t INPUT-CLASS \"TEXTIN\" denotes an ASCII text \n");
+ (void) fprintf(stdout,
+ "\t file with signed integer data in ASCII form,\n");
+ (void) fprintf(stdout,
+ "\t INPUT-CLASS \"TEXTUIN\" denotes an ASCII text \n");
+ (void) fprintf(stdout,
+ "\t file with unsigned integer data in ASCII form,\n");
+ (void) fprintf(stdout,
+ "\t \"TEXTFP\" denotes an ASCII text file containing\n");
+ (void) fprintf(stdout, "\t floating point data in the fixed notation\n");
+ (void) fprintf(stdout, "\t (325.34),\n");
+ (void) fprintf(stdout,
+ "\t \"FP\" denotes a floating point binary file,\n");
+ (void) fprintf(stdout,
+ "\t \"IN\" denotes a signed integer binary file,\n");
+ (void) fprintf(stdout,
+ "\t \"UIN\" denotes an unsigned integer binary file,\n");
+ (void) fprintf(stdout, "\t & \"STR\" denotes an ASCII text file the \n");
+ (void) fprintf(stdout,
+ "\t contents of which should be stored as an 1-D \n");
+ (void) fprintf(stdout, "\t array of strings.\n");
+ (void) fprintf(stdout, "\t If INPUT-CLASS is \"STR\", then RANK, \n");
+ (void) fprintf(stdout,
+ "\t DIMENSION-SIZES, OUTPUT-CLASS, OUTPUT-SIZE, \n");
+ (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE and OUTPUT-BYTE-ORDER \n");
+ (void) fprintf(stdout, "\t will be ignored.\n\n\n");
+ (void) fprintf(stdout, "\t INPUT-SIZE:\n");
+ (void) fprintf(stdout,
+ "\t Integer denoting the size of the input data \n");
+ (void) fprintf(stdout, "\t (8, 16, 32, 64). \n\n");
+ (void) fprintf(stdout, "\t For floating point,\n");
+ (void) fprintf(stdout, "\t INPUT-SIZE can be 32 or 64.\n");
+ (void) fprintf(stdout, "\t For integers (signed and unsigned)\n");
+ (void) fprintf(stdout, "\t INPUT-SIZE can be 8, 16, 32 or 64.\n\n");
+ (void) fprintf(stdout, "\t RANK:\n");
+ (void) fprintf(stdout,
+ "\t Integer denoting the number of dimensions.\n\n");
+ (void) fprintf(stdout, "\t DIMENSION-SIZES:\n");
+ (void) fprintf(stdout,
+ "\t Integers separated by spaces to denote the \n");
+ (void) fprintf(stdout, "\t dimension sizes for the no. of dimensions \n");
+ (void) fprintf(stdout, "\t determined by rank.\n\n");
+ (void) fprintf(stdout, "\t OUTPUT-CLASS:\n");
+ (void) fprintf(stdout,
+ "\t String dentoting data type of the dataset to \n");
+ (void) fprintf(stdout, "\t be written (\"IN\",\"FP\", \"UIN\")\n\n");
+ (void) fprintf(stdout, "\t OUTPUT-SIZE:\n");
+ (void) fprintf(stdout,
+ "\t Integer denoting the size of the data in the \n");
+ (void) fprintf(stdout, "\t output dataset to be written.\n");
+ (void) fprintf(stdout,
+ "\t If OUTPUT-CLASS is \"FP\", OUTPUT-SIZE can be \n");
+ (void) fprintf(stdout, "\t 32 or 64.\n");
+ (void) fprintf(stdout,
+ "\t If OUTPUT-CLASS is \"IN\" or \"UIN\", OUTPUT-SIZE\n");
+ (void) fprintf(stdout, "\t can be 8, 16, 32 or 64.\n\n");
+ (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE:\n");
+ (void) fprintf(stdout, "\t STRING denoting the type of output \n");
+ (void) fprintf(stdout,
+ "\t architecture. Can accept the following values\n");
+ (void) fprintf(stdout, "\t STD\n");
+ (void) fprintf(stdout, "\t IEEE\n");
+ (void) fprintf(stdout, "\t INTEL\n");
+ (void) fprintf(stdout, "\t CRAY\n");
+ (void) fprintf(stdout, "\t MIPS\n");
+ (void) fprintf(stdout, "\t ALPHA\n");
+ (void) fprintf(stdout, "\t NATIVE (default)\n");
+ (void) fprintf(stdout, "\t UNIX\n\n");
+ (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER:\n");
+ (void) fprintf(stdout,
+ "\t String denoting the output-byte-order. Ignored\n");
+ (void) fprintf(stdout,
+ "\t if the OUTPUT-ARCHITECTURE is not specified or\n");
+ (void) fprintf(stdout, "\t if it is IEEE, UNIX or STD. Can accept the \n");
+ (void) fprintf(stdout, "\t following values.\n");
+ (void) fprintf(stdout, "\t BE (default)\n");
+ (void) fprintf(stdout, "\t LE\n\n");
+ (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES:\n");
+ (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n");
+ (void) fprintf(stdout,
+ "\t dimension sizes of the chunk for the no. of \n");
+ (void) fprintf(stdout,
+ "\t dimensions determined by rank. Required field\n");
+ (void) fprintf(stdout,
+ "\t to denote that the dataset will be stored with\n");
+ (void) fprintf(stdout,
+ "\t chunked storage. If this field is absent the\n");
+ (void) fprintf(stdout,
+ "\t dataset will be stored with contiguous storage.\n\n");
+ (void) fprintf(stdout, "\t COMPRESSION-TYPE:\n");
+ (void) fprintf(stdout,
+ "\t String denoting the type of compression to be\n");
+ (void) fprintf(stdout, "\t used with the chunked storage. Requires the\n");
+ (void) fprintf(stdout,
+ "\t CHUNKED-DIMENSION-SIZES to be specified. The only \n");
+ (void) fprintf(stdout,
+ "\t currently supported compression method is GZIP. \n");
+ (void) fprintf(stdout, "\t Will accept the following value\n");
+ (void) fprintf(stdout, "\t GZIP\n\n");
+ (void) fprintf(stdout, "\t COMPRESSION-PARAM:\n");
+ (void) fprintf(stdout,
+ "\t Integer used to denote compression level and \n");
+ (void) fprintf(stdout, "\t this option is to be always specified when \n");
+ (void) fprintf(stdout,
+ "\t the COMPRESSION-TYPE option is specified. The\n");
+ (void) fprintf(stdout, "\t values are applicable only to GZIP \n");
+ (void) fprintf(stdout, "\t compression.\n");
+ (void) fprintf(stdout, "\t Value 1-9: The level of Compression. \n");
+ (void) fprintf(stdout, "\t 1 will result in the fastest \n");
+ (void) fprintf(stdout, "\t compression while 9 will result in \n");
+ (void) fprintf(stdout, "\t the best compression ratio. The default\n");
+ (void) fprintf(stdout, "\t level of compression is 6.\n\n");
+ (void) fprintf(stdout, "\t EXTERNAL-STORAGE:\n");
+ (void) fprintf(stdout,
+ "\t String to denote the name of the non-HDF5 file \n");
+ (void) fprintf(stdout,
+ "\t to store data to. Cannot be used if CHUNKED-\n");
+ (void) fprintf(stdout,
+ "\t DIMENSIONS or COMPRESSION-TYPE or EXTENDIBLE-\n");
+ (void) fprintf(stdout, "\t DATASET is specified.\n");
+ (void) fprintf(stdout, "\t Value <external-filename>: the name of the \n");
+ (void) fprintf(stdout, "\t external file as a string to be used.\n\n");
+ (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS:\n");
+ (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n");
+ (void) fprintf(stdout, "\t maximum dimension sizes of all the \n");
+ (void) fprintf(stdout, "\t dimensions determined by rank. Requires the\n");
+ (void) fprintf(stdout,
+ "\t CHUNKED-DIMENSION-SIZES to be specified. A value of \n");
+ (void) fprintf(stdout, "\t -1 for any dimension implies UNLIMITED \n");
+ (void) fprintf(stdout,
+ "\t DIMENSION size for that particular dimension.\n\n");
+ (void) fprintf(stdout, "\t EXAMPLES:\n");
+ (void) fprintf(stdout, "\t 1. Configuration File may look like:\n\n");
+ (void) fprintf(stdout, "\t PATH work h5 pkamat First-set\n");
+ (void) fprintf(stdout, "\t INPUT-CLASS TEXTFP\n");
+ (void) fprintf(stdout, "\t RANK 3\n");
+ (void) fprintf(stdout, "\t DIMENSION-SIZES 5 2 4\n");
+ (void) fprintf(stdout, "\t OUTPUT-CLASS FP\n");
+ (void) fprintf(stdout, "\t OUTPUT-SIZE 64\n");
+ (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE IEEE\n");
+ (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER LE\n");
+ (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 \n\n");
+ (void) fprintf(stdout,
+ "\t The above configuration will accept a floating point array \n");
+ (void) fprintf(stdout,
+ "\t (5 x 2 x 4) in an ASCII file with the rank and dimension sizes \n");
+ (void) fprintf(stdout,
+ "\t specified and will save it in a chunked data-set (of pattern \n");
+ (void) fprintf(stdout,
+ "\t 2 X 2 X 2) of 64-bit floating point in the little-endian order \n");
+ (void) fprintf(stdout,
+ "\t and IEEE architecture. The dataset will be stored at\n");
+ (void) fprintf(stdout, "\t \"/work/h5/pkamat/First-set\"\n\n");
+ (void) fprintf(stdout, "\t 2. Another configuration could be:\n\n");
+ (void) fprintf(stdout, "\t PATH Second-set\n");
+ (void) fprintf(stdout, "\t INPUT-CLASS IN \n");
+ (void) fprintf(stdout, "\t RANK 5\n");
+ (void) fprintf(stdout, "\t DIMENSION-SIZES 6 3 5 2 4\n");
+ (void) fprintf(stdout, "\t OUTPUT-CLASS IN\n");
+ (void) fprintf(stdout, "\t OUTPUT-SIZE 32\n");
+ (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 2 2\n");
+ (void) fprintf(stdout, "\t EXTENDIBLE-DATASET 1 3 \n");
+ (void) fprintf(stdout, "\t COMPRESSION-TYPE GZIP\n");
+ (void) fprintf(stdout, "\t COMPRESSION-PARAM 7\n\n\n");
+ (void) fprintf(stdout,
+ "\t The above configuration will accept an integer array \n");
+ (void) fprintf(stdout,
+ "\t (6 X 3 X 5 x 2 x 4) in a binary file with the rank and \n");
+ (void) fprintf(stdout,
+ "\t dimension sizes specified and will save it in a chunked data-set\n");
+ (void) fprintf(stdout,
+ "\t (of pattern 2 X 2 X 2 X 2 X 2) of 32-bit floating point in \n");
+ (void) fprintf(stdout,
+ "\t native format (as output-architecture is not specified). The \n");
+ (void) fprintf(stdout,
+ "\t first and the third dimension will be defined as unlimited. The \n");
+ (void) fprintf(stdout,
+ "\t data-set will be compressed using GZIP and a compression level \n");
+ (void) fprintf(stdout, "\t of 7.\n");
+ (void) fprintf(stdout,
+ "\t The dataset will be stored at \"/Second-set\"\n\n");
+ return;
}
-
-void
-usage(char *name)
+void usage(char *name)
{
- (void) fprintf(stdout, "\nUsage:\t%s -h[elp], OR\n", name);
- (void) fprintf(stdout, "\t%s <infile> -c[onfig] <configfile> \
+ (void) fprintf(stdout, "\nUsage:\t%s -h[elp], OR\n", name);
+ (void) fprintf(stdout,
+ "\t%s <infile> -c[onfig] <configfile> \
[<infile> -c[config] <configfile>...] -o[utfile] <outfile> \n\n", name);
- return;
+ return;
}
diff --git a/tools/h5import/h5import.h b/tools/h5import/h5import.h
index 9e4f6e8..05de476 100755
--- a/tools/h5import/h5import.h
+++ b/tools/h5import/h5import.h
@@ -74,111 +74,110 @@
struct path_info
{
- char group[MAX_GROUPS_IN_PATH][MAX_PATH_NAME_LENGTH];
- int count;
+ char group[MAX_GROUPS_IN_PATH][MAX_PATH_NAME_LENGTH];
+ int count;
};
struct Input
{
- struct path_info path;
- int inputClass;
- int inputSize;
- int rank;
- hsize_t* sizeOfDimension;
- int outputClass;
- int outputSize;
- int outputArchitecture;
- int outputByteOrder;
- hsize_t* sizeOfChunk;
- hsize_t* maxsizeOfDimension;
- int compressionType;
- int compressionParam;
- char *externFilename;
- VOIDP data;
- int configOptionVector[NUM_KEYS];
+ struct path_info path;
+ int inputClass;
+ int inputSize;
+ int rank;
+ hsize_t* sizeOfDimension;
+ int outputClass;
+ int outputSize;
+ int outputArchitecture;
+ int outputByteOrder;
+ hsize_t* sizeOfChunk;
+ hsize_t* maxsizeOfDimension;
+ int compressionType;
+ int compressionParam;
+ char *externFilename;
+ VOIDP data;
+ int configOptionVector[NUM_KEYS];
};
struct infilesformat
{
- char datafile[255];
- char configfile[255];
- struct Input in;
- int config; /* Configfile present? No - 0. Yes - 1 */
+ char datafile[255];
+ char configfile[255];
+ struct Input in;
+ int config; /* Configfile present? No - 0. Yes - 1 */
};
struct Options
{
- struct infilesformat infiles[30]; /* structure to hold the list of input file names. Limited to 30*/
- char outfile[256]; /* output file name */
- int fcount; /* number of input files */
+ struct infilesformat infiles[30]; /* structure to hold the list of input file names. Limited to 30*/
+ char outfile[256]; /* output file name */
+ int fcount; /* number of input files */
};
char keytable[NUM_KEYS][30] = {
- "PATH",
- "INPUT-CLASS",
- "INPUT-SIZE",
- "RANK",
- "DIMENSION-SIZES",
- "OUTPUT-CLASS",
- "OUTPUT-SIZE",
- "OUTPUT-ARCHITECTURE",
- "OUTPUT-BYTE-ORDER",
- "CHUNKED-DIMENSION-SIZES",
- "COMPRESSION-TYPE",
- "COMPRESSION-PARAM",
- "EXTERNAL-STORAGE",
- "MAXIMUM-DIMENSIONS"
+ "PATH",
+ "INPUT-CLASS",
+ "INPUT-SIZE",
+ "RANK",
+ "DIMENSION-SIZES",
+ "OUTPUT-CLASS",
+ "OUTPUT-SIZE",
+ "OUTPUT-ARCHITECTURE",
+ "OUTPUT-BYTE-ORDER",
+ "CHUNKED-DIMENSION-SIZES",
+ "COMPRESSION-TYPE",
+ "COMPRESSION-PARAM",
+ "EXTERNAL-STORAGE",
+ "MAXIMUM-DIMENSIONS"
};
static int state_table[15][8] =
{
- /* token ordering:
- FILNAME OPT_o OPT_c OPT_h OPT_d OPT_p OPT_t OPT_s */
+ /* token ordering: FILNAME OPT_o OPT_c OPT_h OPT_d OPT_p OPT_t OPT_s */
- /* state 0: start */
- {1, ERR, ERR, 6, ERR, ERR, ERR, ERR},
+ /* state 0: start */
+ {1, ERR, ERR, 6, ERR, ERR, ERR, ERR},
- /* state 1: input files */
- {ERR, ERR, 2, ERR, 7, ERR, ERR, ERR},
+ /* state 1: input files */
+ {ERR, ERR, 2, ERR, 7, ERR, ERR, ERR},
- /* state 2: -c[onfigfile] */
- {3, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 2: -c[onfigfile] */
+ {3, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 3: configfile */
- {1, 4, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 3: configfile */
+ {1, 4, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 4: -o[utfile] */
- {5, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 4: -o[utfile] */
+ {5, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 5: outfile */
- {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 5: outfile */
+ {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 6: -h[elp] */
- {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 6: -h[elp] */
+ {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 7: -d[ims] */
- {8, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 7: -d[ims] */
+ {8, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 8: dimensions */
- {1, 4, ERR, ERR, ERR, 9, 11, 13},
+ /* state 8: dimensions */
+ {1, 4, ERR, ERR, ERR, 9, 11, 13},
- /* state 9: -p[ath] */
- {10, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 9: -p[ath] */
+ {10, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 10: path name */
- {1, 4, ERR, ERR, ERR, ERR, 11, 13},
+ /* state 10: path name */
+ {1, 4, ERR, ERR, ERR, ERR, 11, 13},
- /* state 11: -t[ype] */
- {12, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 11: -t[ype] */
+ {12, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 12: data type */
- {1, 4, ERR, ERR, ERR, ERR, ERR, 13},
+ /* state 12: data type */
+ {1, 4, ERR, ERR, ERR, ERR, ERR, 13},
- /* state 13: -s[ize] */
- {14, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
+ /* state 13: -s[ize] */
+ {14, ERR, ERR, ERR, ERR, ERR, ERR, ERR},
- /* state 14: data size */
- {1, 4, ERR, ERR, ERR, ERR, ERR, ERR}
+ /* state 14: data size */
+ {1, 4, ERR, ERR, ERR, ERR, ERR, ERR}
};
@@ -193,39 +192,39 @@ void help(char *);
static int gtoken(char *s);
static int process(struct Options *opt);
-static int processConfigurationFile(char *infile, struct Input *in, FILE **strm);
+static int processConfigurationFile(char *infile, struct Input *in);
static int mapKeywordToIndex(char *key);
static int parsePathInfo(struct path_info *path, char *strm);
static int parseDimensions(struct Input *in, char *strm);
static int getInputSize(struct Input *in, int ival);
static int getInputClass(struct Input *in, char * strm);
static int InputClassStrToInt(char *temp);
-static int getRank(struct Input *in, FILE** strm);
-static int getDimensionSizes(struct Input *in, FILE** strm);
-static int getOutputSize(struct Input *in, FILE** strm);
-static int getOutputClass(struct Input *in, FILE** strm);
+static int getRank(struct Input *in, FILE *strm);
+static int getDimensionSizes(struct Input *in, FILE *strm);
+static int getOutputSize(struct Input *in, FILE *strm);
+static int getOutputClass(struct Input *in, FILE *strm);
static int OutputClassStrToInt(char *temp);
-static int getOutputArchitecture(struct Input *in, FILE** strm);
+static int getOutputArchitecture(struct Input *in, FILE *strm);
static int OutputArchStrToInt(char *temp);
-static int getOutputByteOrder(struct Input *in, FILE** strm);
+static int getOutputByteOrder(struct Input *in, FILE *strm);
static int OutputByteOrderStrToInt(char *temp);
-static int getChunkedDimensionSizes(struct Input *in, FILE **strm);
-static int getCompressionType(struct Input *in, FILE** strm);
+static int getChunkedDimensionSizes(struct Input *in, FILE *strm);
+static int getCompressionType(struct Input *in, FILE *strm);
static int CompressionTypeStrToInt(char *temp);
-static int getCompressionParameter(struct Input *in, FILE** strm);
-static int getExternalFilename(struct Input *in, FILE** strm);
-static int getMaximumDimensionSizes(struct Input *in, FILE **strm);
-static int processDataFile(char *infile, struct Input *in, FILE **strm, hid_t file_id);
-static int readIntegerData(FILE **strm, struct Input *in);
-static int readFloatData(FILE **strm, struct Input *in);
+static int getCompressionParameter(struct Input *in, FILE *strm);
+static int getExternalFilename(struct Input *in, FILE *strm);
+static int getMaximumDimensionSizes(struct Input *in, FILE *strm);
+static int processDataFile(char *infile, struct Input *in, hid_t file_id);
+static int readIntegerData(FILE *strm, struct Input *in);
+static int readFloatData(FILE *strm, struct Input *in);
static int allocateIntegerStorage(struct Input *in);
static int allocateFloatStorage(struct Input *in);
hid_t createOutputDataType(struct Input *in);
hid_t createInputDataType(struct Input *in);
-static int readUIntegerData(FILE **strm, struct Input *in);
+static int readUIntegerData(FILE *strm, struct Input *in);
static int allocateUIntegerStorage(struct Input *in);
-static int validateConfigurationParameters(struct Input * in);
-static int processStrData(FILE **strm, struct Input *in, hid_t file_id);
+static int validateConfigurationParameters(struct Input *in);
+static int processStrData(FILE *strm, struct Input *in, hid_t file_id);
#endif /* H5IMPORT_H__ */