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| author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2020-10-16 16:10:35 (GMT) |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-10-16 16:10:35 (GMT) |
| commit | 9bd2102b7747b255b570d428399151296baa17d1 (patch) | |
| tree | ec69c69944fba94f3586c804b36091fa88d76b0c | |
| parent | e6cda4817b303e2f984a31a8c20dd12f326772c5 (diff) | |
| download | hdf5-9bd2102b7747b255b570d428399151296baa17d1.zip hdf5-9bd2102b7747b255b570d428399151296baa17d1.tar.gz hdf5-9bd2102b7747b255b570d428399151296baa17d1.tar.bz2 | |
Update javadoc comments to reduce warnings (#41)
44 files changed, 2964 insertions, 98 deletions
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index 1147e6c..f7d8dc4 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -241,10 +241,14 @@ public class H5 implements java.io.Serializable { */ public final static int LIB_VERSION[] = { 1, 13, 0 }; + /** + * add system property to load library by path + */ public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"; - // add system property to load library by name from library path, via - // System.loadLibrary() + /** + * add system property to load library by name from library path, via System.loadLibrary() + */ public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"; private static String s_libraryName; private static boolean isLibraryLoaded = false; @@ -257,6 +261,9 @@ public class H5 implements java.io.Serializable { loadH5Lib(); } + /** + * load native library + */ public static void loadH5Lib() { // Make sure that the library is loaded only once if (isLibraryLoaded) @@ -468,6 +475,35 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException; + /** + * H5set_free_list_limits + * Sets limits on the different kinds of free lists. Setting a value + * of -1 for a limit means no limit of that type. These limits are global + * for the entire library. Each "global" limit only applies to free lists + * of that type, so if an application sets a limit of 1 MB on each of the + * global lists, up to 3 MB of total storage might be allocated (1MB on + * each of regular, array and block type lists). + * + * The settings for block free lists are duplicated to factory free lists. + * Factory free list limits cannot be set independently currently. + * + * @param reg_global_lim + * The limit on all "regular" free list memory used + * @param reg_list_lim + * The limit on memory used in each "regular" free list + * @param arr_global_lim + * The limit on all "array" free list memory used + * @param arr_list_lim + * The limit on memory used in each "array" free list + * @param blk_global_lim + * The limit on all "block" free list memory used + * @param blk_list_lim + * The limit on memory used in each "block" free list + * @return a non-negative value if successful, along with the version information. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException; @@ -1016,7 +1052,7 @@ public class H5 implements java.io.Serializable { /** * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with - * mem_type_id. The entire attribute is read into buf from the file. + * mem_type_id. The entire attribute is read into buffer from the file. * * @param attr_id * IN: Identifier of an attribute to read. @@ -1037,11 +1073,47 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, obj, true); @@ -1141,63 +1213,343 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_double(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_float(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_int(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_long(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of short from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of shortfrom the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_short(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght strings from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of string from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; @@ -1270,12 +1622,48 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -1353,60 +1741,286 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_double(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_float(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_int(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_long(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_short(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of string to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of variable-lenght to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of variable-lenght with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; /** * H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from - * the application memory buffer buf into the file. + * the application memory buffer buffer of variable-lenght strings into the file. * * ---- contributed by Rosetta Biosoftware * @@ -1415,7 +2029,7 @@ public class H5 implements java.io.Serializable { * @param mem_type_id * Identifier of the memory datatype. * @param buf - * Buffer with data to be written to the file. + * Buffer of variable-lenght strings with data to be written to the file. * * @return a non-negative value if successful * @@ -1922,12 +2536,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2043,65 +2705,411 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of type double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght strings. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2170,7 +3178,7 @@ public class H5 implements java.io.Serializable { /** * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer - * buf into the file. + * into the file. * * @param dataset_id * Identifier of the dataset read from. @@ -2198,12 +3206,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2299,59 +3355,357 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-length with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2628,7 +3982,7 @@ public class H5 implements java.io.Serializable { /** - * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * H5Epush pushes a new error record onto the error stack specified by estack_id. * * @param stack_id * IN: Error stack identifier. @@ -2657,6 +4011,31 @@ public class H5 implements java.io.Serializable { { H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg); } + /** + * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * + * @param stack_id + * IN: Error stack identifier. + * @param file + * IN: Name of the file in which the error was detected. + * @param func + * IN: Name of the function in which the error was detected. + * @param line + * IN: Line number within the file at which the error was detected. + * @param cls_id + * IN: Error class identifier. + * @param maj_id + * IN: Major error identifier. + * @param min_id + * IN: Minor error identifier. + * @param msg + * IN: Error description string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - file, func, or msg is null. + **/ public synchronized static native void H5Epush2(long stack_id, String file, String func, int line, long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException; @@ -2714,6 +4093,24 @@ public class H5 implements java.io.Serializable { { H5Ewalk2(stack_id, direction, func, client_data); } + /** + * H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the + * function specified in func for each error along the way. + * + * @param stack_id + * IN: Error stack identifier. + * @param direction + * IN: Direction in which the error stack is to be walked. + * @param func + * IN: Function to be called for each error encountered. + * @param client_data + * IN: Data to be passed with func. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - func is null. + **/ public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data) throws HDF5LibraryException, NullPointerException; @@ -2950,6 +4347,19 @@ public class H5 implements java.io.Serializable { private synchronized static native long _H5Fget_create_plist(long file_id) throws HDF5LibraryException; + /** + * H5Fget_filesize retrieves the file size of the HDF5 file. This function + * is called after an existing file is opened in order + * to learn the true size of the underlying file. + * + * @param file_id + * IN: File identifier for a currently-open HDF5 file + * + * @return the file size of the HDF5 file + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException; /** @@ -3598,37 +5008,118 @@ public class H5 implements java.io.Serializable { return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, tokens, indx_type, -1); + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, indx_type, -1); + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * @param indx_order + * IN: Index order for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException { - if (oname == null) { + if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_full(): name array is null"); } - if (otype == null) { + if (objTypes == null) { throw new NullPointerException("H5Gget_obj_info_full(): object type array is null"); } - if (oname.length == 0) { + if (objNames.length == 0) { throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero"); } - if (oname.length != otype.length) { + if (objNames.length != objTypes.length) { throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different"); } if (ltype == null) - ltype = new int[otype.length]; + ltype = new int[objTypes.length]; if (fno == null) fno = new long[tokens.length]; @@ -3639,15 +5130,15 @@ public class H5 implements java.io.Serializable { if (indx_order < 0) indx_order = HDF5Constants.H5_ITER_INC; - log.trace("H5Gget_obj_info_full: oname_len={}", oname.length); - int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type, + log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length); + int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type, indx_order); - for (int indx = 0; indx < oname.length; indx++) - log.trace("H5Gget_obj_info_full: oname={}", oname[indx]); + for (int indx = 0; indx < objNames.length; indx++) + log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]); return status; } - private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, + private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException; @@ -3663,9 +5154,9 @@ public class H5 implements java.io.Serializable { * @param idx * IN: the index of the object to iterate. * @param oname - * the name of the object [OUT] + * OUT: the name of the object * @param type - * the type of the object [OUT] + * OUT: the type of the object * * @return non-negative if successful, -1 if not. * @@ -3866,13 +5357,40 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// + /** + * H5Iget_file_id obtains the file ID specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the file ID. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException; - @Deprecated + + /** + * H5Iget_name_long retrieves the name of an object specified by the identifier, obj_id. + * @deprecated + * + * @param obj_id + * IN: Identifier of the object. + * @param name + * OUT: Attribute name buffer. + * @param size + * IN: Maximum length of the name to retrieve. + * + * @return the length of the name retrieved. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size) throws HDF5LibraryException, NullPointerException; /** - * H5Iget_name_str retrieves the name of an object specified by the identifier, obj_id. + * H5Iget_name retrieves the name of an object specified by the identifier, obj_id. * * @param obj_id * IN: Identifier of the object. @@ -3885,10 +5403,44 @@ public class H5 implements java.io.Serializable { public synchronized static native String H5Iget_name(long obj_id) throws HDF5LibraryException; + /** + * H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Idec_ref decrements the reference count specified by the identifier, obj_id. + * If the reference count for an ID reaches zero, the object will be closed. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Iinc_ref increments the reference count specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException; /** @@ -5179,7 +6731,7 @@ public class H5 implements java.io.Serializable { return id; } - public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, + private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -5210,8 +6762,30 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException; + /** + * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be corked. + **/ public synchronized static native void H5Odisable_mdc_flushes(long object_id); + /** + * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be uncorked. + **/ public synchronized static native void H5Oenable_mdc_flushes(long object_id); + /** + * H5Oare_mdc_flushes_disabled retrieve the object's "cork" status. + * + * @param object_id + * IN: Identifier of the object to be flushed. + * + * @return the cork status + * TRUE if mdc flushes for the object is disabled + * FALSE if mdc flushes for the object is not disabled + **/ public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id); // /////// unimplemented //////// @@ -5364,6 +6938,7 @@ public class H5 implements java.io.Serializable { * IN: First property object to be compared * @param plid2 * IN: Second property object to be compared + * * @return positive value if equal; zero if unequal, a negative value if failed * * @exception HDF5LibraryException @@ -5371,6 +6946,19 @@ public class H5 implements java.io.Serializable { */ public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException; + /** + * H5Pequal determines if two property lists or classes are equal + * + * @param plid1 + * IN: First property object to be compared + * @param plid2 + * IN: Second property object to be compared + * + * @return TRUE if equal, FALSE if unequal + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException { if (H5Pequal(plid1, plid2) == 1) return true; @@ -5456,7 +7044,7 @@ public class H5 implements java.io.Serializable { return _H5Pclose_class(plid); } - public synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; + private synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; /** * H5Pclose terminates access to a property list. @@ -5524,6 +7112,19 @@ public class H5 implements java.io.Serializable { // Define property list iteration function type // typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); + /** + * H5Pcreate_class_nocb creates an new property class with no callback functions. + * + * @param parent_class + * IN: Identifier of the parent property class. + * @param name + * IN: Name of the property class. + * + * @return a property list identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException { long id = _H5Pcreate_class_nocb(parent_class, name); if (id > 0) { @@ -5550,17 +7151,69 @@ public class H5 implements java.io.Serializable { // private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data, // H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException; + /** + * H5Pregister2_nocb registers a property list with no callback functions. + * + * @param plist_class + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param def_value + * IN: Defaul value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException; // public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set, // H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Pinsert2_nocb inserts a property list with no callback functions. + * + * @param plist + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param value + * IN: Defaul value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException; // public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get, // H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Piterate iterates over the properties in a property list or class + * + * @param plist + * IN: ID of property object to iterate over + * @param idx + * IN/OUT: index of the property to begin with + * @param op + * IN: function to be called with each property iterated over. + * @param op_data + * IN: iteration data from user + * + * @return + * the return value of the last call to op if it was non-zero, + * zero if all properties have been processed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - size is null. + * + **/ public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException; // /////// Object creation property list (OCPL) routines /////// @@ -5573,7 +7226,7 @@ public class H5 implements java.io.Serializable { * @param attributes * The maximun and minimum no. of attributes to be stored. * - * <pre> + * <pre> * attributes[0] = The maximum number of attributes to be stored in compact storage * attributes[1] = The minimum number of attributes to be stored in dense storage * </pre> @@ -5673,6 +7326,51 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times) throws HDF5LibraryException; + /** + * H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline + * depending on whether PLIST is a dataset creation or dataset + * transfer property list. The FLAGS argument specifies certain + * general properties of the filter and is documented below. + * The CD_VALUES is an array of CD_NELMTS integers which are + * auxiliary data for the filter. The integer vlues will be + * stored in the dataset object header as part of the filter + * information. + *<p> + * The FLAGS argument is a bit vector of the following fields: + *<p> + * H5Z_FLAG_OPTIONAL(0x0001) + * If this bit is set then the filter is optional. If the + * filter fails during an H5Dwrite() operation then the filter + * is just excluded from the pipeline for the chunk for which it + * failed; the filter will not participate in the pipeline + * during an H5Dread() of the chunk. If this bit is clear and + * the filter fails then the entire I/O operation fails. + * If this bit is set but encoding is disabled for a filter, + * attempting to write will generate an error. + *<p> + * Note: This function currently supports only the permanent filter + * pipeline. That is, PLIST_ID must be a dataset creation + * property list. + * + * @param plist + * IN: Property list identifier. + * @param filter + * IN: Filter to be modified to the pipeline. + * @param flags + * IN: Bit vector specifying certain general properties of the filter. + * @param cd_nelmts + * IN: Number of elements in cd_values + * @param cd_values + * IN: Auxiliary data for the filter. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name or an array is null. + * + **/ public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts, int[] cd_values) throws HDF5LibraryException, NullPointerException; @@ -5844,9 +7542,37 @@ public class H5 implements java.io.Serializable { throws HDF5LibraryException, NullPointerException; + /** + * H5Pall_filters_avail query to verify that all the filters set + * in the dataset creation property list are available currently. + * + * @param dcpl_id + * IN: Property list identifier. + * + * @return + * TRUE if all filters available + * FALSE if one or more filters not currently available. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Premove_filter deletes a filter from the dataset creation property list; + * deletes all filters if filter is H5Z_FILTER_NONE + * + * @param obj_id + * IN: Property list identifier. + * @param filter + * IN: Filter identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException; /** @@ -5864,6 +7590,18 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException; + /** + * H5Pset_fletcher32 sets Fletcher32 checksum of EDC for a dataset creation + * property list or group creation property list. + * + * @param plist + * IN: Property list identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException, NullPointerException; @@ -6334,11 +8072,35 @@ public class H5 implements java.io.Serializable { */ public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException; - public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_family_offset gets offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the offset. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException; - public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_family_offset sets the offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param offset + * IN: the offset value + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException; /** * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes @@ -6389,9 +8151,8 @@ public class H5 implements java.io.Serializable { double rdcc_w0) throws HDF5LibraryException; /** - * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list and - * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is - * used when the file is opened. + * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list. + * This configuration is used when the file is opened. * * @param plist_id * IN: Identifier of the file access property list. @@ -6403,6 +8164,19 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and + * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is + * used when the file is opened. + * + * @param plist_id + * IN: Identifier of the file access property list. + * @param config_ptr + * IN: H5AC_cache_config_t, the initial metadata cache configuration. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr) throws HDF5LibraryException; @@ -6437,10 +8211,35 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref) throws HDF5LibraryException; - public synchronized static native int H5Pget_fclose_degree(long plist_id) throws HDF5LibraryException, + /** + * H5Pget_fclose_degree returns the degree for the file close behavior for a file access + * property list. + * + * @param fapl_id + * IN File access property list + * + * @return the degree for the file close behavior + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pset_fclose_degree(long plist, int degree) throws HDF5LibraryException, + /** + * H5Pset_fclose_degree sets the degree for the file close behavior. + * + * @param fapl_id + * IN File access property list + * @param degree + * IN the degree for the file close behavior + * + * @return non-negative if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException, NullPointerException; /** @@ -6471,8 +8270,40 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException; + /** + * H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size + * property from a file access property list. + * + * @param fapl_id + * IN: Identifier for property list to query. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException; + /** + * H5Pset_sieve_buf_size Sets the maximum size of the data seive buffer used for file + * drivers which are capable of using data sieving. The data sieve + * buffer is used when performing I/O on datasets in the file. Using a + * buffer which is large anough to hold several pieces of the dataset + * being read in for hyperslab selections boosts performance by quite a + * bit. + * <p> + * The default value is set to 64KB, indicating that file I/O for raw data + * reads and writes will occur in at least 64KB blocks. Setting the value to 0 + * with this function will turn off the data sieving + * + * @param fapl_id + * IN: Identifier of property list to modify. + * @param size + * IN: maximum size of the data seive buffer. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException; /** @@ -6816,6 +8647,25 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** + * H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset. + * + * @param plist + * IN: Identifier for property list to query. + * @param ndims + * IN: The number of dimensions of each chunk. + * @param dim + * IN: An array containing the size of each chunk. + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - dims array is null. + * @exception IllegalArgumentException + * - dims <=0 + **/ public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception, NullPointerException, IllegalArgumentException { if (dim == null) { @@ -7051,9 +8901,37 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException; + /** + * H5Pset_szip Sets up the use of the szip filter. + * + * @param plist + * IN: Dataset creation property list identifier. + * @param options_mask + * IN: Bit vector specifying certain general properties of the filter. + * @param pixels_per_block + * IN: Number of pixels in blocks + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_shuffle Sets up the use of the shuffle filter. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException, NullPointerException; @@ -7181,20 +9059,91 @@ public class H5 implements java.io.Serializable { return retVal; } + /** + * H5Pset_fill_value checks if the fill value is defined for a dataset creation property list. + * + * @param plist_id + * IN: Property list identifier. + * @param status + * IN: The fill value setting: + * H5D_FILL_VALUE_UNDEFINED + * H5D_FILL_VALUE_DEFAULT + * H5D_FILL_VALUE_USER_DEFINED + * H5D_FILL_VALUE_ERROR + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error converting data array + **/ public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Gets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * OUT: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Sets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * IN: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Gets fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * OUT: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException; - public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Sets the fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * IN: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException; /** * H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list. @@ -7494,6 +9443,20 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg) throws HDF5LibraryException, IllegalArgumentException; + /** + * H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful; + * otherwise 0 on failure. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return buffer size, in bytes, if successful; otherwise 0 on failure + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception IllegalArgumentException + * - plist is invalid. + **/ public synchronized static native long H5Pget_buffer_size(long plist) throws HDF5LibraryException, IllegalArgumentException; @@ -7524,11 +9487,33 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException, IllegalArgumentException; - public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_edc_check gets the error-detecting algorithm in use. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return the error-detecting algorithm + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException; - public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_edc_check sets the error-detecting algorithm. + * + * @param plist + * Identifier for the dataset transfer property list. + * @param check + * the error-detecting algorithm to use. + * + * @return non-negative if succeed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException; /** * H5Pget_btree_ratio Get the B-tree split ratios for a dataset transfer property list. @@ -7573,9 +9558,46 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right) throws HDF5LibraryException; + /** + * H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * OUT: hyper vector size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_hyper_vector_size sets the number of + * "I/O vectors" (offset and length pairs) which are to be + * accumulated in memory before being issued to the lower levels + * of the library for reading or writing the actual data. + * Increasing the number should give better performance, but use + * more memory during hyperslab I/O. The vector size must be + * greater than 1. + *,p. + * The default is to use 1024 vectors for I/O during hyperslab + * reading/writing. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * IN: hyper vestor size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size) throws HDF5LibraryException, NullPointerException; @@ -7773,8 +9795,32 @@ public class H5 implements java.io.Serializable { // /////// String creation property list (STRCPL) routines /////// + /** + * H5Pget_char_encoding gets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * + * @return Returns the character encoding of the string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_char_encoding sets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * @param encoding + * IN: the character encoding of the string + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding) throws HDF5LibraryException; @@ -7964,20 +10010,51 @@ public class H5 implements java.io.Serializable { // /////// file drivers property list routines /////// + /** + * H5Pget_fapl_core retrieve H5FD_CORE I/O settings. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * OUT: how much to grow the memory each time + * @param backing_store + * OUT: write to file name on flush setting + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * IN: how much to grow the memory each time + * @param backing_store + * IN: write to file name on flush setting + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store) throws HDF5LibraryException, NullPointerException; /** - * H5Pget_fapl_direct Retrieve direct I/O settings. + * H5Pget_fapl_direct queries properties set by the H5Pset_fapl_core. * * @param fapl_id * IN: File access property list identifier * @param info - * OUT: Returned property list information info[0] = alignment Required memory alignment boundary info[1] - * = block_size File system block size info[2] = cbuf_size Copy buffer size + * OUT: Returned property list information + * info[0] = increment -how much to grow the memory each time + * info[1] = backing_store - write to file name on flush setting * * @return a non-negative value if successful; otherwise returns a negative value. * @@ -8008,14 +10085,72 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size, long cbuf_size) throws HDF5LibraryException; + /** + * H5Pget_fapl_family Returns information about the family file access property list. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * OUT: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * OUT: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_family Sets up use of the direct I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * IN: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * IN: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the hdfs driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_hdfs gets the properties hdfs I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the hdfs driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -8093,17 +10228,99 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the + * old split driver which stored meta data in one file and raw + * data in another file + * + * @param fapl_id + * IN: File access property list identifier + * @param meta_ext + * IN: meta filename extension + * @param meta_plist_id + * IN: File access property list identifier for metadata + * @param raw_ext + * IN: raw data filename extension + * @param raw_plist_id + * IN: File access property list identifier raw data + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id, String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_stdio Sets up use of the stdio I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_windows Sets up use of the windows I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the ros3 driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the ros3 driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException; // /////// unimplemented //////// @@ -9191,6 +11408,21 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException, NullPointerException; + /** + * H5Soffset_simple sets the offset of a simple dataspace space_id. + * + * @param space_id + * IN: The identifier for the dataspace object to reset. + * @param offset + * IN: The offset at which to position the selection. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset array is null. + **/ public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception, NullPointerException { if (offset == null) { @@ -9317,6 +11549,32 @@ public class H5 implements java.io.Serializable { return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock); } + /** + * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified + * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace. + * + * @param space_id + * IN: Identifier of dataspace selection to modify + * @param op + * IN: Operation to perform on current selection. + * @param start + * IN: Offset of start of hyperslab + * @param stride + * IN: Hyperslab stride. + * @param count + * IN: Number of blocks included in hyperslab. + * @param block + * IN: Size of block in hyperslab. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; @@ -9378,6 +11636,23 @@ public class H5 implements java.io.Serializable { public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size, long[] maximum_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Sset_extent_simple sets or resets the size of an existing dataspace. + * + * @param space_id + * Dataspace identifier. + * @param rank + * Rank, or dimensionality, of the dataspace. + * @param current_size + * Array containing current size of dataspace. + * @param maximum_size + * Array containing maximum size of dataspace. + * + * @return a dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size, byte[] maximum_size) throws HDF5LibraryException, NullPointerException { ByteBuffer csbb = ByteBuffer.wrap(current_size); @@ -9786,6 +12061,23 @@ public class H5 implements java.io.Serializable { return H5Tenum_insert_int(type, name, value); } + /** + * H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype. + * + * @param type + * IN: Identifier of datatype. + * @param name + * IN: The name of the member + * @param value + * IN: The value of the member, data of the correct type + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException, NullPointerException { int[] val = { value }; @@ -10942,15 +13234,128 @@ public class H5 implements java.io.Serializable { // //////////////////////////////////////////////////////////// /// VOL Connector Functionality + /** + * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_name + * IN: name of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id); + /** + * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_value + * IN: value of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id); + /** + * H5VLis_connector_registered_by_name tests whether a VOL class has been registered. + * + * @param name + * IN: name of the connector. + * + * @return true if a VOL connector with that name has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5VLis_connector_registered_by_name(String name); + /** + * H5VLis_connector_registered_by_value tests whether a VOL class has been registered. + * + * @param connector_value + * IN: value of the connector. + * + * @return true if a VOL connector with that value has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value); + /** + * H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object. + * + * @param object_id + * IN: Identifier of the object. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id(long object_id); + /** + * H5VLget_connector_id_by_name retrieves the ID for a registered VOL connector. + * + * @param name + * IN: name of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id_by_name(String name); + /** + * H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector. + * + * @param connector_value + * IN: value of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5VLget_connector_id_by_value(int connector_value); + /** + * H5VLget_connector_name returns the connector name for the VOL associated with the + * object or file ID. + * + * @param object_id + * IN: Identifier of the object. + * + * @return the connector name + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native String H5VLget_connector_name(long object_id); + /** + * H5VLclose closes a VOL connector ID. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5VLclose(long connector_id); + /** + * H5VLunregister_connector removes a VOL connector ID from the library. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5VLunregister_connector(long connector_id); // /////// unimplemented //////// @@ -10963,11 +13368,44 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// - public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zfilter_avail checks if a filter is available. + * + * @param filter + * IN: filter number. + * + * @return a non-negative(TRUE/FALSE) value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException; + /** + * H5Zget_filter_info gets information about a pipeline data filter. + * + * @param filter + * IN: filter number. + * + * @return the filter information flags + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException; - public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zunregister unregisters a filter. + * + * @param filter + * IN: filter number. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException; // /////// unimplemented //////// diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java index 988c8fb..69c9709 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java @@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5A_info_t; -//Information class for link callback(for H5Aiterate) +/** + * Information class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_cb extends Callbacks { - int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data); + /** + * application callback for each attribute + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current attribute about the object + * @param info the attribute's "info" struct + * @param op_data the operator data passed in to H5Aiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5A_info_t info, H5A_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java index 51d67d5..bdc96fa 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java index ead8f73..8ad336f 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pset/get_append_flush) +/** + * Information class for link callback for H5Pset/get_append_flush. + * + */ public interface H5D_append_cb extends Callbacks { + /** + * application callback for each dataset access property list + * + * @param dataset_id the ID for the dataset being iterated over + * @param cur_dims the dimension sizes for determining boundary + * @param op_data the operator data passed in to H5Pset/get_append_flush + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long dataset_id, long[] cur_dims, H5D_append_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java index 8bf6410..795ed1e 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Dappend. + * + */ public interface H5D_append_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java index a911a1c..ca10342 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java @@ -13,7 +13,29 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Diterate) +/** + * Information class for link callback for H5Diterate. + * + */ public interface H5D_iterate_cb extends Callbacks { + /** + * application callback for each dataset element + * + * @param elem the pointer to the element in memory containing the current point + * @param elem_type the datatype ID for the elements stored in elem + * @param ndim the number of dimensions for POINT array + * @param point the array containing the location of the element within the original dataspace + * @param op_data the operator data passed in to H5Diterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] elem, long elem_type, int ndim, long[] point, H5D_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java index d049711..43fc159 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Diterate. + * + */ public interface H5D_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java index afc04ae..e5914c1 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java @@ -15,7 +15,27 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5E_error2_t; -//Information class for link callback(for H5Ewalk) +/** + * Information class for link callback for H5Ewalk. + * + */ public interface H5E_walk_cb extends Callbacks { + /** + * application callback for each error stack element + * + * @param nidx the index of the current error stack element + * @param info the error stack "info" struct + * @param op_data the operator data passed in to H5Ewalk + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java index 0be8977..3ff09ec 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Ewalk. + * + */ public interface H5E_walk_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java index ad9ad8c..ad28b04 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ public interface H5L_iterate_opdata_t { } diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java index f92fbc4..d08001a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java @@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5L_info_t; -// Information class for link callback (for H5Lvisit/H5Lvisit_by_name). +/** + * Information class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ public interface H5L_iterate_t extends Callbacks { - int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); + /** + * application callback for each group + * + * @param loc_id the ID for the group being iterated over + * @param name the name of the current link + * @param info the link's "info" struct + * @param op_data the operator data passed in to H5Literate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java index e1c47b5..15eb1a1 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ public interface H5O_iterate_opdata_t { } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java index 9a55106..e627775 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java @@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5O_info_t; -// Information class for link callback(for H5Ovisit/H5Ovisit_by_name) +/** + * Information class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ public interface H5O_iterate_t extends Callbacks { - int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); + /** + * application callback for each group + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current object + * @param info the object's "info" struct + * @param op_data the operator data passed in to H5Oiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java index e77d386..78a87ad 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java @@ -13,7 +13,26 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param close_data the function to call when a property list is closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_close_func_t close_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java index 0d5ad9e..709ee494 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java index 139f877..878bbd3 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class + * + */ public interface H5P_cls_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param new_prop_id the ID for the property list copy + * @param old_prop_id the ID for the property list class being copied + * @param copy_data the function to call when each property list in this class is copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long new_prop_id, long old_prop_id, H5P_cls_copy_func_t copy_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java index 12c2601..b3e7f09 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_copy_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java index e64ec6f..88d0aa6 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java @@ -13,7 +13,26 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param create_data the function to call when each property list in this class is created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_create_func_t create_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java index 73646f1..8e259cc 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java index 5ecb88d..60e1884 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Piterate) +/** + * Information class for link callback for H5Piterate. + * + */ public interface H5P_iterate_cb extends Callbacks { + /** + * application callback for each property list + * + * @param plist the ID for the property list being iterated over + * @param name the name of the current property list + * @param op_data the operator data passed in to H5Piterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long plist, String name, H5P_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java index 2e320b4..4c5d222 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java @@ -13,6 +13,10 @@ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Piterate. + * + */ public interface H5P_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java index 103fe5f..40569bc 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being closed + * @param size the size of the property value + * @param value the value of the property being closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java index 46477b9..cc466a6 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_compare_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param value1 the value of the first property being compared + * @param value2 the value of the second property being compared + * @param size the size of the property value + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] value1, byte[] value2, long size); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java index 57994bb5..59e4bb8 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being copied + * @param size the size of the property value + * @param value the value of the property being copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java index 8791c22..5c6df7a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java @@ -13,7 +13,27 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property list being created + * @param size the size of the property value + * @param value the initial value for the property being created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java index 46cd097..5206d4f 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java @@ -13,7 +13,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_delete_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID of the property list the property is deleted from + * @param name the name of the property being deleted + * @param size the size of the property value + * @param value the value of the property being deleted + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java index 04599a0..8f44497 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java @@ -13,7 +13,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_get_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being queried + * @param name the name of the property being queried + * @param size the size of the property value + * @param value the value being retrieved for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java index 6ac750f..2a2d3a1 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java @@ -13,7 +13,28 @@ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_set_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being modified + * @param name the name of the property being modified + * @param size the size of the property value + * @param value the value being set for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java index 1e4b5fd..70fdd11 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java @@ -31,6 +31,9 @@ package hdf.hdf5lib.exceptions; * */ public class HDF5Exception extends RuntimeException { + /** + * the specified detail message of this exception + */ protected String detailMessage; /** diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java index ea4a89a..fea5b6d 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java @@ -13,6 +13,12 @@ package hdf.hdf5lib.exceptions; +/** + * The class HDF5LibraryException returns errors raised by the HDF5 library. + * <p> + * This sub-class represents HDF-5 major error code <b>H5E_REFERENCE</b> + */ + public class HDF5ReferenceException extends HDF5LibraryException { /** * Constructs an <code>HDF5ReferenceException</code> with no specified diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java index 20863dc..a118d05 100644 --- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java +++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for H5Pget_mdc_config/H5Pset_mdc_config +/** + * Information struct for H5Pget_mdc_config/H5Pset_mdc_config + * + */ public class H5AC_cache_config_t implements Serializable{ private static final long serialVersionUID = -6748085696476149972L; // general configuration fields: diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java index a46a495..cd7a397 100644 --- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) +/** + * Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) + * + */ public class H5A_info_t implements Serializable{ private static final long serialVersionUID = 2791443594041667613L; public boolean corder_valid; // Indicate if creation order is valid diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java index 257ad05..083537f 100644 --- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Ewalk) +/** + * Information struct for Attribute (For H5Ewalk) + * + */ public class H5E_error2_t implements Serializable{ private static final long serialVersionUID = 279144359041667613L; diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java index 9fcff2e..26690ec 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java @@ -16,7 +16,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the HDFS VFD file access property list (fapl) * structure. * diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java index a899e10..735cc7e 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java @@ -16,7 +16,7 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the ROS3 VFD file access property list (fapl) * structure. * diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java index 4664b5b..836b683 100644 --- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for object (for H5Fget_info) +/** + * Information struct for object (for H5Fget_info) + * + */ public class H5F_info2_t implements Serializable{ private static final long serialVersionUID = 4691681162544054518L; public int super_version; // Superblock version # diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java index 56c876e..9a5c72e 100644 --- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5G_info_t implements Serializable{ private static final long serialVersionUID = -3746463015312132912L; public int storage_type; // Type of storage for links in group diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java index 377e617..16d9bbf 100644 --- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java @@ -17,7 +17,10 @@ import java.io.Serializable; import hdf.hdf5lib.HDF5Constants; -// Information struct for link (for H5Lget_info/H5Lget_info_by_idx) +/** + * Information struct for link (for H5Lget_info/H5Lget_info_by_idx) + * + */ public class H5L_info_t implements Serializable { private static final long serialVersionUID = -4754320605310155033L; public int type; diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java index 73aaa47..df76638 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/** + * Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ public class H5O_hdr_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; public int version; /* Version number of header format in file */ @@ -56,25 +59,25 @@ public class H5O_hdr_info_t implements Serializable { H5O_hdr_info_t info = (H5O_hdr_info_t) o; if (this.version != info.version) - return false; + return false; if (this.nmesgs != info.nmesgs) - return false; + return false; if (this.nchunks != info.nchunks) - return false; + return false; if (this.flags != info.flags) - return false; + return false; if (this.space_total != info.space_total) - return false; + return false; if (this.space_meta != info.space_meta) - return false; + return false; if (this.space_mesg != info.space_mesg) - return false; + return false; if (this.space_free != info.space_free) - return false; + return false; if (this.mesg_present != info.mesg_present) - return false; + return false; if (this.mesg_shared != info.mesg_shared) - return false; + return false; return true; } diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java index 6a26a10..2f76384 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/** + * Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ public class H5O_info_t implements Serializable { private static final long serialVersionUID = 4691681163544054518L; public long fileno; /* File number that object is located in */ diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java index f410a7f..89a5c5f 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). +/** + * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). + * + */ public class H5O_native_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; @@ -45,7 +48,7 @@ public class H5O_native_info_t implements Serializable { if (!this.hdr_info.equals(info.hdr_info) || !this.obj_info.equals(info.obj_info) || !this.attr_info.equals(info.attr_info)) - return false; + return false; return true; } diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java index e6d2474..be934e4 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_token_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java @@ -17,7 +17,10 @@ import java.util.Arrays; import hdf.hdf5lib.HDF5Constants; -// Object token, which is a unique and permanent identifier, for an HDF5 object within a container. +/** + * Object token, which is a unique and permanent identifier, for an HDF5 object within a container. + * + */ public class H5O_token_t implements Serializable { private static final long serialVersionUID = -4754320605310155032L; public byte[] data; diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java index 7159f02..1c3ab80 100644 --- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java @@ -15,7 +15,10 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5_ih_info_t implements Serializable { private static final long serialVersionUID = -142238015615462707L; public long index_size; /* btree and/or list */ @@ -38,9 +41,9 @@ public class H5_ih_info_t implements Serializable { H5_ih_info_t info = (H5_ih_info_t) o; if (this.index_size != info.index_size) - return false; + return false; if (this.heap_size != info.heap_size) - return false; + return false; return true; } diff --git a/src/H5FDhdfs.c b/src/H5FDhdfs.c index 569b889..e1b06d3 100644 --- a/src/H5FDhdfs.c +++ b/src/H5FDhdfs.c @@ -593,7 +593,7 @@ done: * Function: H5Pset_fapl_hdfs * * Purpose: Modify the file access property list to use the H5FD_HDFS - * driver defined in this source file. All driver specfic + * driver defined in this source file. All driver specific * properties are passed in as a pointer to a suitably * initialized instance of H5FD_hdfs_fapl_t * |