update configure to disable memory alloc sanity check in Hdf5 1 12 1 (#687)

* Hdf5 1 12 doxygen version correction (#658)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Attempt format uniformity in RELEASE.txt.

* BUG: DataSet assignment operator is missing (#503)

* BUG: DataSet assignment operator is missing

* Some compilers complain if the copy constructor is given explicitly
  but the assignment operator is implicitly set to default.

* Explicitly defining the assignment operator allows us to properly
  handle reference counters for shared resources.

* BUG: DataSet assignment operator is missing.

* Mimicking code of H5DataType::operator() as suggested by @bmribler.

* Added test

Description:
    Added test for DataSet::operator= that Leengit added
Platform tested:
    Linux/64 (jelly)

* Removed Author field.

* Commit clang format changes.

* Entry for Leengit's github PR #503

* Removed lines left by mistake

Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Add H5Dchunk_iter method for iterating over chunks (#6)

* Add H5Dchunk_iter method for iterating over chunks

This method iterates over all chunks in dataset, calling a user-supplied
callback with the chunk information and optional user supplied data.

The iterator is stopped when ITER_STOP is returned by the user-supplied
callback or the iterator is exhausted.

Existing methods to get chunk_info performs an iteration each time, so
to get many or all chunks causes SUM(i) for i = 0 -> N operations for N
chunks, as opposed to N operations when using this iterator for this use case.

* H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration.

* H5D: move H5Dchunk_iter private methods to specific

* trace: add H5D_chunk_iter_op_t and trace H5D.c

* chunks-iter: document chunk_iter

* chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Set initial doxygen version for H5Dchunk_iter().

* Revert "Set initial doxygen version for H5Dchunk_iter()."

This reverts commit d739e46d55f8c40b9333c57e9ae4f83c03572a27.

* Revert "Add H5Dchunk_iter method for iterating over chunks (#6)"

This reverts commit 53e113977a775a9311e7df015937f71b11f76f7b.

* Add flushrefresh errors with check-passthrough-vol to known problems in
RELEASE.txt.

* Minor RELEASE.txt updates.

* Hdf5 1 12 Remove version from pkgcfg file names (#672)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* More minor updates.

* Update configure disablhing memory alloc sanity check for release.
Last 50 lines of
/mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021
Last 50 lines of
/mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue

Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com>
Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org>
Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>

1 files changed, 6 insertions, 11 deletions

diff --git a/configure b/configure
index 589009d..c9958a0 100755
--- a/configure
+++ b/configure
@@ -1855,8 +1855,7 @@ Optional Features:
                           allocation sanity checking. This could cause more
                           memory use and somewhat slower allocation. This
                           option is orthogonal to the
-                          --enable-using-memchecker option. [default=yes if
-                          debug build, otherwise no]
+                          --enable-using-memchecker option. [default=no]
   --enable-parallel       Search for MPI-IO and MPI support files
   --enable-instrument     Enable library instrumentation of optimization
                           tracing (only used with parallel builds).
@@ -9811,7 +9810,7 @@ else
 JAVA_TEST=Test.java
 CLASS_TEST=Test.class
 cat << \EOF > $JAVA_TEST
-/* #line 9814 "configure" */
+/* #line 9813 "configure" */
 public class Test {
 }
 EOF
@@ -10027,7 +10026,7 @@ else
 JAVA_TEST=Test.java
 CLASS_TEST=Test.class
 cat << \EOF > $JAVA_TEST
-/* #line 10030 "configure" */
+/* #line 10029 "configure" */
 public class Test {
 }
 EOF
@@ -10061,7 +10060,7 @@ JAVA_TEST=Test.java
 CLASS_TEST=Test.class
 TEST=Test
 cat << \EOF > $JAVA_TEST
-/* [#]line 10064 "configure" */
+/* [#]line 10063 "configure" */
 public class Test {
 public static void main (String args[]) {
         System.exit (0);
@@ -10456,7 +10455,7 @@ else
 
 
 cat << \EOF > Test.java
-/* #line 10459 "configure" */
+/* #line 10458 "configure" */
 import junit.textui.TestRunner;
 public class Test {
 
@@ -31692,11 +31691,7 @@ fi
 
 ## Set default
 if test "X-$MEMORYALLOCSANITYCHECK" = X- ; then
-  if test "X-$BUILD_MODE" = "X-debug" ; then
-    MEMORYALLOCSANITYCHECK=yes
-  else
-    MEMORYALLOCSANITYCHECK=no
-  fi
+  MEMORYALLOCSANITYCHECK=no
 fi
 
 case "X-$MEMORYALLOCSANITYCHECK" in