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-rw-r--r--.gitlab/ci/configure_debian10_aarch64_ninja.cmake16
-rw-r--r--.gitlab/ci/configure_debian10_ninja.cmake16
-rw-r--r--.gitlab/ci/configure_fedora37_makefiles.cmake13
-rw-r--r--.gitlab/ci/docker/debian10-aarch64/deps_packages.lst3
-rw-r--r--.gitlab/ci/docker/debian10/deps_packages.lst3
-rw-r--r--.gitlab/ci/docker/fedora37/deps_packages.lst3
-rw-r--r--.gitlab/ci/env_fedora37_makefiles.cmake1
-rw-r--r--.gitlab/os-linux.yml6
8 files changed, 57 insertions, 4 deletions
diff --git a/.gitlab/ci/configure_debian10_aarch64_ninja.cmake b/.gitlab/ci/configure_debian10_aarch64_ninja.cmake
index 16282b6..dff0db1 100644
--- a/.gitlab/ci/configure_debian10_aarch64_ninja.cmake
+++ b/.gitlab/ci/configure_debian10_aarch64_ninja.cmake
@@ -25,6 +25,22 @@ set(CMake_TEST_FindGnuTLS "ON" CACHE BOOL "")
set(CMake_TEST_FindGSL "ON" CACHE BOOL "")
set(CMake_TEST_FindGTest "ON" CACHE BOOL "")
set(CMake_TEST_FindGTK2 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_MPICH_C_COMPILER "/usr/bin/h5pcc.mpich" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_MPICH_C_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+# set(CMake_TEST_FindHDF5_MPICH_CXX_COMPILER "/usr/bin/h5c++.mpich" CACHE FILEPATH "") # h5c++.mpich does not exist
+# set(CMake_TEST_FindHDF5_MPICH_CXX_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_MPICH_Fortran_COMPILER "/usr/bin/h5pfc.mpich" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_MPICH_Fortran_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_OpenMPI_C_COMPILER "/usr/bin/h5pcc.openmpi" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_C_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+# set(CMake_TEST_FindHDF5_OpenMPI_CXX_COMPILER "/usr/bin/h5c++.openmpi" CACHE FILEPATH "") # h5c++.openmpi does not exist
+# set(CMake_TEST_FindHDF5_OpenMPI_CXX_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_OpenMPI_Fortran_COMPILER "/usr/bin/h5pfc.openmpi" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_Fortran_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_Serial_C_COMPILER "/usr/bin/h5cc" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_CXX_COMPILER "/usr/bin/h5c++" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_Fortran_COMPILER "/usr/bin/h5fc" CACHE FILEPATH "")
set(CMake_TEST_FindIconv "ON" CACHE BOOL "")
set(CMake_TEST_FindICU "ON" CACHE BOOL "")
set(CMake_TEST_FindImageMagick "ON" CACHE BOOL "")
diff --git a/.gitlab/ci/configure_debian10_ninja.cmake b/.gitlab/ci/configure_debian10_ninja.cmake
index 327c1c5..211a2a7 100644
--- a/.gitlab/ci/configure_debian10_ninja.cmake
+++ b/.gitlab/ci/configure_debian10_ninja.cmake
@@ -29,6 +29,22 @@ set(CMake_TEST_FindGnuTLS "ON" CACHE BOOL "")
set(CMake_TEST_FindGSL "ON" CACHE BOOL "")
set(CMake_TEST_FindGTest "ON" CACHE BOOL "")
set(CMake_TEST_FindGTK2 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_MPICH_C_COMPILER "/usr/bin/h5pcc.mpich" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_MPICH_C_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+# set(CMake_TEST_FindHDF5_MPICH_CXX_COMPILER "/usr/bin/h5c++.mpich" CACHE FILEPATH "") # h5c++.mpich does not exist
+# set(CMake_TEST_FindHDF5_MPICH_CXX_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_MPICH_Fortran_COMPILER "/usr/bin/h5pfc.mpich" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_MPICH_Fortran_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_OpenMPI_C_COMPILER "/usr/bin/h5pcc.openmpi" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_C_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+# set(CMake_TEST_FindHDF5_OpenMPI_CXX_COMPILER "/usr/bin/h5c++.openmpi" CACHE FILEPATH "") # h5c++.openmpi does not exist
+# set(CMake_TEST_FindHDF5_OpenMPI_CXX_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_OpenMPI_Fortran_COMPILER "/usr/bin/h5pfc.openmpi" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_Fortran_COMPILER_EXPLICIT "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_Serial_C_COMPILER "/usr/bin/h5cc" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_CXX_COMPILER "/usr/bin/h5c++" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_Fortran_COMPILER "/usr/bin/h5fc" CACHE FILEPATH "")
set(CMake_TEST_FindIconv "ON" CACHE BOOL "")
set(CMake_TEST_FindICU "ON" CACHE BOOL "")
set(CMake_TEST_FindImageMagick "ON" CACHE BOOL "")
diff --git a/.gitlab/ci/configure_fedora37_makefiles.cmake b/.gitlab/ci/configure_fedora37_makefiles.cmake
index f5676aa..0a271bf 100644
--- a/.gitlab/ci/configure_fedora37_makefiles.cmake
+++ b/.gitlab/ci/configure_fedora37_makefiles.cmake
@@ -28,6 +28,18 @@ set(CMake_TEST_FindGnuTLS "ON" CACHE BOOL "")
set(CMake_TEST_FindGSL "ON" CACHE BOOL "")
set(CMake_TEST_FindGTest "ON" CACHE BOOL "")
set(CMake_TEST_FindGTK2 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5 "ON" CACHE BOOL "")
+set(CMake_TEST_FindHDF5_MPICH_C_COMPILER "/usr/lib64/mpich/bin/h5pcc" CACHE FILEPATH "")
+# set(CMake_TEST_FindHDF5_MPICH_CXX_COMPILER "/usr/lib64/mpich/bin/h5pc++" CACHE FILEPATH "") # h5pc++ does not exist
+set(CMake_TEST_FindHDF5_MPICH_ENVMOD "PATH=path_list_prepend:/usr/lib64/mpich/bin;LD_LIBRARY_PATH=path_list_prepend:/usr/lib64/mpich/lib" CACHE STRING "")
+set(CMake_TEST_FindHDF5_MPICH_Fortran_COMPILER "/usr/lib64/mpich/bin/h5pfc" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_C_COMPILER "/usr/lib64/openmpi/bin/h5pcc" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_OpenMPI_ENVMOD "PATH=path_list_prepend:/usr/lib64/openmpi/bin;LD_LIBRARY_PATH=path_list_prepend:/usr/lib64/openmpi/lib" CACHE STRING "")
+# set(CMake_TEST_FindHDF5_OpenMPI_CXX_COMPILER "/usr/lib64/openmpi/bin/h5pc++" CACHE FILEPATH "") # h5pc++ does not exist
+# set(CMake_TEST_FindHDF5_OpenMPI_Fortran_COMPILER "/usr/lib64/openmpi/bin/h5pfc" CACHE FILEPATH "") # cannot find its own hdf5.mod
+set(CMake_TEST_FindHDF5_Serial_C_COMPILER "/usr/bin/h5cc" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_CXX_COMPILER "/usr/bin/h5c++" CACHE FILEPATH "")
+set(CMake_TEST_FindHDF5_Serial_Fortran_COMPILER "/usr/bin/h5fc" CACHE FILEPATH "")
set(CMake_TEST_FindIconv "ON" CACHE BOOL "")
set(CMake_TEST_FindICU "ON" CACHE BOOL "")
set(CMake_TEST_FindImageMagick "ON" CACHE BOOL "")
@@ -45,6 +57,7 @@ set(CMake_TEST_FindLibXslt "ON" CACHE BOOL "")
set(CMake_TEST_FindMPI_C "ON" CACHE BOOL "")
set(CMake_TEST_FindMPI_CXX "ON" CACHE BOOL "")
set(CMake_TEST_FindMPI_Fortran "ON" CACHE BOOL "")
+set(CMake_TEST_FindMPI_ENVMOD "PATH=path_list_prepend:/usr/lib64/mpich/bin;LD_LIBRARY_PATH=path_list_prepend:/usr/lib64/mpich/lib" CACHE STRING "")
set(CMake_TEST_FindMPI "ON" CACHE BOOL "")
set(CMake_TEST_FindODBC "ON" CACHE BOOL "")
set(CMake_TEST_FindOpenACC "ON" CACHE BOOL "")
diff --git a/.gitlab/ci/docker/debian10-aarch64/deps_packages.lst b/.gitlab/ci/docker/debian10-aarch64/deps_packages.lst
index 36b5d8c..ca83323 100644
--- a/.gitlab/ci/docker/debian10-aarch64/deps_packages.lst
+++ b/.gitlab/ci/docker/debian10-aarch64/deps_packages.lst
@@ -59,6 +59,9 @@ libgrpc++-dev libgrpc-dev
libgsl-dev
libgtest-dev
libgtk2.0-dev
+libhdf5-dev
+libhdf5-mpich-dev
+libhdf5-openmpi-dev
libicu-dev
libinput-dev
libjpeg-dev
diff --git a/.gitlab/ci/docker/debian10/deps_packages.lst b/.gitlab/ci/docker/debian10/deps_packages.lst
index bd4377a..0b79675 100644
--- a/.gitlab/ci/docker/debian10/deps_packages.lst
+++ b/.gitlab/ci/docker/debian10/deps_packages.lst
@@ -62,6 +62,9 @@ libgrpc++-dev libgrpc-dev
libgsl-dev
libgtest-dev
libgtk2.0-dev
+libhdf5-dev
+libhdf5-mpich-dev
+libhdf5-openmpi-dev
libicu-dev
libinput-dev
libjpeg-dev
diff --git a/.gitlab/ci/docker/fedora37/deps_packages.lst b/.gitlab/ci/docker/fedora37/deps_packages.lst
index 61382b5..51f84ff 100644
--- a/.gitlab/ci/docker/fedora37/deps_packages.lst
+++ b/.gitlab/ci/docker/fedora37/deps_packages.lst
@@ -73,6 +73,9 @@ grpc-devel grpc-plugins
gsl-devel
gtest-devel
gtk2-devel
+hdf5-devel
+hdf5-mpich-devel
+hdf5-openmpi-devel
ImageMagick-c++-devel
java-11-openjdk-devel
jsoncpp-devel
diff --git a/.gitlab/ci/env_fedora37_makefiles.cmake b/.gitlab/ci/env_fedora37_makefiles.cmake
index 2bcb6d0..ef13cda 100644
--- a/.gitlab/ci/env_fedora37_makefiles.cmake
+++ b/.gitlab/ci/env_fedora37_makefiles.cmake
@@ -1,2 +1 @@
set(ENV{MY_RUBY_HOME} "/usr/local/rvm/rubies/ruby-3.0.4")
-set(ENV{PATH} "/usr/lib64/mpich/bin:$ENV{PATH}")
diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml
index 60cd0b7..3d62b01 100644
--- a/.gitlab/os-linux.yml
+++ b/.gitlab/os-linux.yml
@@ -45,7 +45,7 @@
### Debian
.debian10:
- image: "kitware/cmake:ci-debian10-x86_64-2023-03-08"
+ image: "kitware/cmake:ci-debian10-x86_64-2023-03-29"
variables:
GIT_CLONE_PATH: "$CI_BUILDS_DIR/cmake ci"
@@ -60,7 +60,7 @@
CMAKE_CI_NO_INSTALL: 1
.debian10_aarch64:
- image: "kitware/cmake:ci-debian10-aarch64-2023-03-08"
+ image: "kitware/cmake:ci-debian10-aarch64-2023-03-29"
variables:
GIT_CLONE_PATH: "$CI_BUILDS_DIR/cmake ci"
@@ -69,7 +69,7 @@
### Fedora
.fedora37:
- image: "kitware/cmake:ci-fedora37-x86_64-2023-03-08"
+ image: "kitware/cmake:ci-fedora37-x86_64-2023-03-29"
variables:
GIT_CLONE_PATH: "$CI_BUILDS_DIR/cmake ci/long file name for testing purposes"
generated by cgit v0.12 at 2024-12-27 21:42:15 (GMT)