Release-1.4.5-20051109

14 files changed, 181 insertions, 77 deletions

diff --git a/INSTALL b/INSTALL
index a267c4e..513c952 100644
--- a/INSTALL
+++ b/INSTALL
@@ -1,7 +1,7 @@
-DOXYGEN Version 1.4.5-20051024
+DOXYGEN Version 1.4.5-20051109
 
 Please read the installation section of the manual 
 (http://www.doxygen.org/install.html) for instructions.
 
 --------
-Dimitri van Heesch (24 October 2005)
+Dimitri van Heesch (09 November 2005)
diff --git a/README b/README
index 521e50f..7b3b640 100644
--- a/README
+++ b/README
@@ -1,4 +1,4 @@
-DOXYGEN Version 1.4.5_20051024
+DOXYGEN Version 1.4.5_20051109
 
 Please read INSTALL for compilation instructions.
 
@@ -17,4 +17,4 @@ to subscribe to the lists or to visit the archives.
 
 Enjoy,
 
-Dimitri van Heesch (dimitri@stack.nl) (24 October 2005)
+Dimitri van Heesch (dimitri@stack.nl) (09 November 2005)
diff --git a/VERSION b/VERSION
index 17af46e..08c1674 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-1.4.5-20051024
+1.4.5-20051109
diff --git a/src/commentscan.l b/src/commentscan.l
index e5830df..76f50f1 100644
--- a/src/commentscan.l
+++ b/src/commentscan.l
@@ -959,20 +959,17 @@ MAILADR   [a-z_A-Z0-9.+\-]+"@"[a-z_A-Z0-9\-]+("."[a-z_A-Z0-9\-]+)+[a-z_A-Z0-9\-]
 <ReadFormulaShort>{CMD}"f$"		{ // end of inline formula
   					  formulaText+="$";
 					  addOutput(addFormula());
-					  addOutput(' ');
 					  BEGIN(Comment);
   					}
 <ReadFormulaLong>{CMD}"f]"		{ // end of block formula
 					  formulaText+="\\]";
 					  addOutput(addFormula());
-					  addOutput(' ');
 					  BEGIN(Comment);
   					}
 <ReadFormulaLong>{CMD}"f}"		{ // end of custom env formula
 					  formulaText+="\\end";
 					  formulaText+=formulaEnv;
 					  addOutput(addFormula());
-					  addOutput(' ');
 					  BEGIN(Comment);
   					}
 <ReadFormulaLong,ReadFormulaShort>[^\\@\n]+ { // any non-special character
@@ -1636,7 +1633,6 @@ MAILADR   [a-z_A-Z0-9.+\-]+"@"[a-z_A-Z0-9\-]+("."[a-z_A-Z0-9\-]+)+[a-z_A-Z0-9\-]
 					  {
 					    if (*yytext=='\n') yyLineNr++;
 					    addOutput('\n');
-					    printf("functionProto=%s\n",functionProto.data());
 					    langParser->parsePrototype(functionProto);
 					    BEGIN( Comment );
 					  }
diff --git a/src/config.l b/src/config.l
index 4860177..7298baa 100644
--- a/src/config.l
+++ b/src/config.l
@@ -1734,8 +1734,8 @@ void Config::create()
                     "SHOW_DIRECTORIES",
 		    "If the sources in your project are distributed over multiple directories \n"
 		    "then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy \n"
-		    "in the documentation. The default is YES.\n",
-		    TRUE
+		    "in the documentation. The default is NO.\n",
+		    FALSE
               );
   cs = addString(  "FILE_VERSION_FILTER",
                    "The FILE_VERSION_FILTER tag can be used to specify a program or script that \n"
diff --git a/src/dirdef.cpp b/src/dirdef.cpp
index 8452f0b..286f527 100644
--- a/src/dirdef.cpp
+++ b/src/dirdef.cpp
@@ -227,7 +227,13 @@ void DirDef::writeDocumentation(OutputList &ol)
       if (!dd->briefDescription().isEmpty() && Config_getBool("BRIEF_MEMBER_DESC"))
       {
         ol.startMemberDescription();
-        ol.parseDoc(briefFile(),briefLine(),dd,0,dd->briefDescription(),FALSE,FALSE);
+        ol.parseDoc(briefFile(),briefLine(),dd,0,dd->briefDescription(),
+            FALSE, // indexWords
+            FALSE, // isExample
+            0,     // exampleName
+            FALSE, // single line
+            TRUE   // link from index
+           );
         ol.endMemberDescription();
         ol.newParagraph();
       }
@@ -280,7 +286,13 @@ void DirDef::writeDocumentation(OutputList &ol)
       if (!fd->briefDescription().isEmpty() && Config_getBool("BRIEF_MEMBER_DESC"))
       {
         ol.startMemberDescription();
-        ol.parseDoc(briefFile(),briefLine(),fd,0,fd->briefDescription(),FALSE,FALSE);
+        ol.parseDoc(briefFile(),briefLine(),fd,0,fd->briefDescription(),
+            FALSE, // indexWords
+            FALSE, // isExample
+            0,     // exampleName
+            FALSE, // single line
+            TRUE   // link from index
+           );
         ol.endMemberDescription();
         ol.newParagraph();
       }
@@ -354,8 +366,12 @@ void DirDef::addUsesDependency(DirDef *dir,FileDef *srcFd,
                                FileDef *dstFd,bool inherited)
 {
   if (this==dir) return; // do not add self-dependencies
-  //printf("  > add dependency %s->%s due to %s\n",shortName().data(),
-  //    dir->shortName().data(),fd->name().data());
+  //static int count=0;
+  //printf("  %d add dependency %s->%s due to %s->%s\n",
+  //    count++,shortName().data(),
+  //    dir->shortName().data(),
+  //    srcFd->name().data(),
+  //    dstFd->name().data());
 
   // levels match => add direct dependency
   bool added=FALSE;
@@ -383,15 +399,18 @@ void DirDef::addUsesDependency(DirDef *dir,FileDef *srcFd,
     m_usedDirs->insert(dir->getOutputFileBase(),usedDir);
     added=TRUE;
   }
-  if (added && dir->parent())
+  if (added)
   {
-    // add relation to parent of used dir
-    addUsesDependency(dir->parent(),srcFd,dstFd,inherited);
-  }
-  if (parent())
-  {
-    // add relation for the parent of this dir as well
-    parent()->addUsesDependency(dir,srcFd,dstFd,TRUE);
+    if (dir->parent())
+    {
+      // add relation to parent of used dir
+      addUsesDependency(dir->parent(),srcFd,dstFd,inherited);
+    }
+    if (parent())
+    {
+      // add relation for the parent of this dir as well
+      parent()->addUsesDependency(dir,srcFd,dstFd,TRUE);
+    }
   }
 }
 
@@ -406,6 +425,7 @@ void DirDef::computeDependencies()
     FileDef *fd;
     for (fli.toFirst();(fd=fli.current());++fli) // foreach file in dir dd
     {
+      //printf("  File %s\n",fd->name().data());
       //printf("** dir=%s file=%s\n",shortName().data(),fd->name().data());
       QList<IncludeInfo> *ifl = fd->includeFileList();
       if (ifl)
@@ -415,12 +435,15 @@ void DirDef::computeDependencies()
         for (ifli.toFirst();(ii=ifli.current());++ifli) // foreach include file
         {
           //printf("  > %s\n",ii->includeName.data());
+          //printf("    #include %s\n",ii->includeName.data());
           if (ii->fileDef && ii->fileDef->isLinkable()) // linkable file
           {
             DirDef *usedDir = ii->fileDef->getDirDef();
             if (usedDir)
             {
               // add dependency: thisDir->usedDir
+              //static int count=0;
+              //printf("      %d: add dependency %s->%s\n",count++,name().data(),usedDir->name().data());
               addUsesDependency(usedDir,fd,ii->fileDef,FALSE);
             }
           } 
@@ -818,6 +841,7 @@ void computeDirDependencies()
   // compute uses dependencies between directories
   for (sdi.toFirst();(dir=sdi.current());++sdi)
   {
+    //printf("computeDependencies for %s: #dirs=%d\n",dir->name().data(),Doxygen::directories.count());
     dir->computeDependencies();
   }
 
diff --git a/src/doxygen.cpp b/src/doxygen.cpp
index 6bfedd4..0e3133d 100644
--- a/src/doxygen.cpp
+++ b/src/doxygen.cpp
@@ -1805,11 +1805,19 @@ static MemberDef *addVariableToFile(
          )
         // variable already in the scope
       {
-        Debug::print(Debug::Variables,0,
-           "    variable already found: scope=%s\n",md->getOuterScope()->name().data());
-        addMemberDocs(root,md,def,0,FALSE);
-        md->setRefItems(root->sli);
-        return md;
+        if (! // not a php array
+            (getLanguageFromFileName(md->getFileDef()->name())==SrcLangExt_PHP) &&
+            (md->argsString()!=root->args && root->args.find('[')!=-1)
+           ) 
+          // not a php array variable
+        {
+
+          Debug::print(Debug::Variables,0,
+              "    variable already found: scope=%s\n",md->getOuterScope()->name().data());
+          addMemberDocs(root,md,def,0,FALSE);
+          md->setRefItems(root->sli);
+          return md;
+        }
       }
     } 
   }
@@ -6789,7 +6797,7 @@ static void findMainPage(Entry *root)
       QCString title=root->args.stripWhiteSpace();
       QCString indexName=Config_getBool("GENERATE_TREEVIEW")?"main":"index";
       Doxygen::mainPage = new PageDef(root->fileName,root->startLine,
-                              indexName, root->doc,title);
+                              indexName, root->brief+root->doc,title);
       //setFileNameForSections(root->anchors,"index",Doxygen::mainPage);
       Doxygen::mainPage->setFileName(indexName);
           
@@ -6983,7 +6991,7 @@ static void buildExampleList(Entry *root)
       else
       {
         PageDef *pd=new PageDef(root->fileName,root->startLine,
-                                root->name,root->doc,root->args);
+                                root->name,root->brief+root->doc,root->args);
         pd->setFileName(convertNameToFile(pd->name()+"-example"));
         pd->addSectionsToDefinition(root->anchors);
         //pi->addSections(root->anchors);
@@ -8709,7 +8717,7 @@ void parseInput()
   msg("Adding todo/test/bug list items...\n");
   addListReferences();
 
-  if (Config_getBool("SHOW_DIRECTORIES"))
+  if (Config_getBool("SHOW_DIRECTORIES") && Config_getBool("DIRECTORY_GRAPH"))
   {
     msg("Computing dependencies between directories...\n");
     computeDirDependencies();
diff --git a/src/htmlgen.cpp b/src/htmlgen.cpp
index 64166e0..9ff634d 100644
--- a/src/htmlgen.cpp
+++ b/src/htmlgen.cpp
@@ -1693,10 +1693,13 @@ static void writeDefaultQuickLinks(QTextStream &t,bool compact,
 
   if (annotatedClasses>0)
   {
-    startQuickIndexItem(t,"annotated"+Doxygen::htmlFileExtension,
-        hli==HLI_Hierarchy || hli==HLI_Classes || 
-        hli==HLI_Annotated || hli==HLI_Functions || hli==HLI_ClassVisible,
-        compact,first,relPath);
+    static bool alphaIndex=Config_getBool("ALPHABETICAL_INDEX");
+    {
+      startQuickIndexItem(t,QCString(alphaIndex?"classes":"annotated")+Doxygen::htmlFileExtension,
+          hli==HLI_Hierarchy || hli==HLI_Classes || 
+          hli==HLI_Annotated || hli==HLI_Functions || hli==HLI_ClassVisible,
+          compact,first,relPath);
+    }
     t << fixSpaces(theTranslator->trClasses());
     endQuickIndexItem(t);
   }
@@ -1822,10 +1825,6 @@ static void writeDefaultQuickLinks(QTextStream &t,bool compact,
     startQuickIndexList(t,compact);
     if (annotatedClasses>0)
     {
-      startQuickIndexItem(t,"annotated"+Doxygen::htmlFileExtension,
-          hli==HLI_Annotated,compact,first,relPath);
-      t << fixSpaces(theTranslator->trCompoundList());
-      endQuickIndexItem(t);
       if (Config_getBool("ALPHABETICAL_INDEX"))
       {
         startQuickIndexItem(t,"classes"+Doxygen::htmlFileExtension,
@@ -1833,6 +1832,10 @@ static void writeDefaultQuickLinks(QTextStream &t,bool compact,
         t << fixSpaces(theTranslator->trAlphabeticalList());
         endQuickIndexItem(t);
       }
+      startQuickIndexItem(t,"annotated"+Doxygen::htmlFileExtension,
+          hli==HLI_Annotated,compact,first,relPath);
+      t << fixSpaces(theTranslator->trCompoundList());
+      endQuickIndexItem(t);
     } 
     if (hierarchyClasses>0)
     {
diff --git a/src/index.cpp b/src/index.cpp
index e5e3ace..ca9ff6a 100644
--- a/src/index.cpp
+++ b/src/index.cpp
@@ -614,9 +614,28 @@ void writeClassHierarchy(OutputList &ol)
 
 //----------------------------------------------------------------------------
 
-// TODO: let this function return the real number of items in the hierarchy.
+static int countClassesInTreeList(const ClassSDict &cl)
+{
+  int count=0;
+  ClassSDict::Iterator cli(cl);
+  for (;cli.current(); ++cli)
+  {
+    ClassDef *cd=cli.current();
+    if (!hasVisibleRoot(cd->baseClasses())) // filter on root classes
+    {
+      if (cd->isVisibleInHierarchy()) // should it be visible
+      {
+        count++;
+      }
+    }
+  }
+  return count;
+}
+
 int countClassHierarchy()
 {
+#if 0
+// TODO: let this function return the real number of items in the hierarchy.
   initClassHierarchy(&Doxygen::classSDict);
   int count=0;
   ClassSDict::Iterator cli(Doxygen::classSDict);
@@ -625,6 +644,13 @@ int countClassHierarchy()
     if (cli.current()->subClasses()->count()>0) count++;
   }
   return count;
+#endif
+  int count=0;
+  initClassHierarchy(&Doxygen::classSDict);
+  initClassHierarchy(&Doxygen::hiddenClasses);
+  count+=countClassesInTreeList(Doxygen::classSDict);
+  count+=countClassesInTreeList(Doxygen::hiddenClasses);
+  return count;
 }
 
 //----------------------------------------------------------------------------
@@ -2985,7 +3011,11 @@ void writeDirTreeNode(OutputList &ol, DirDef *dd,int level)
     ftvHelp = FTVHelp::getInstance();
   }
 
-  bool isDir = TRUE;
+  static bool tocExpand = Config_getBool("TOC_EXPAND");
+  bool isDir = dd->subDirs().count()>0 || // there are subdirs
+               (tocExpand &&              // or toc expand and
+                dd->getFiles() && dd->getFiles()->count()>0 // there are files
+               );
   //printf("gd=`%s': pageDict=%d\n",gd->name().data(),gd->pageDict->count());
   if (htmlHelp)
   {
@@ -3008,7 +3038,7 @@ void writeDirTreeNode(OutputList &ol, DirDef *dd,int level)
     ol.endTypewriter();
   }
 
-  // write subgroups
+  // write sub directories
   if (dd->subDirs().count()>0)
   {
     startIndexHierarchy(ol,level+1);
@@ -3021,29 +3051,12 @@ void writeDirTreeNode(OutputList &ol, DirDef *dd,int level)
     endIndexHierarchy(ol,level+1); 
   }
 
-  if (Config_getBool("TOC_EXPAND"))
+  if (tocExpand)
   {
-    // write file list
+    // write files of this directory
     FileList *fileList=dd->getFiles();
     if (fileList && fileList->count()>0)
     {
-      if (htmlHelp)
-      {
-        htmlHelp->addContentsItem(TRUE, 
-            convertToHtml(theTranslator->trFile(TRUE,FALSE)), 
-            dd->getOutputFileBase(), 0);
-        htmlHelp->incContentsDepth();
-      }
-
-      if (ftvHelp)
-      {
-
-        ftvHelp->addContentsItem(TRUE, dd->getReference(), 
-            dd->getOutputFileBase(), 0, 
-            theTranslator->trFile(TRUE,FALSE));
-        ftvHelp->incContentsDepth();
-      }
-
       FileDef *fd=fileList->first();
       while (fd)
       {
@@ -3053,10 +3066,6 @@ void writeDirTreeNode(OutputList &ol, DirDef *dd,int level)
           ftvHelp->addContentsItem(FALSE, fd->getReference(), fd->getOutputFileBase(), 0, convertToHtml(fd->name()));
         fd=fileList->next();
       }
-      if (htmlHelp)
-        htmlHelp->decContentsDepth();
-      if (ftvHelp)
-        ftvHelp->decContentsDepth();
     }
   }
 
diff --git a/src/memberdef.cpp b/src/memberdef.cpp
index 15a95f5..9651e33 100644
--- a/src/memberdef.cpp
+++ b/src/memberdef.cpp
@@ -2039,7 +2039,10 @@ void MemberDef::setAnchor(const char *a)
   a=a;
   QCString memAnchor = name();
   if (!args.isEmpty()) memAnchor+=args;
-  //anc = escapeAnchor(memAnchor);
+
+  // include definition as well, to distinguish between two template
+  // specializations that only differ in the template parameters.
+  memAnchor.prepend(definition());
   
   // convert to md5 hash
   uchar md5_sig[16];
diff --git a/src/scanner.l b/src/scanner.l
index 4f05a10..b69690c 100644
--- a/src/scanner.l
+++ b/src/scanner.l
@@ -213,6 +213,7 @@ static void initEntry()
   //  current->groups->append(new Grouping(*autoGroupStack.top()));
   //}
   initGroupInfo(current);
+  isTypedef=FALSE;
 }
 
 
@@ -314,15 +315,13 @@ static bool nameIsOperator(QCString &name)
 static void setContext()
 {
   QCString fileName = yyFileName;
-  insideIDL  = fileName.right(4)==".idl" || fileName.right(5)==".pidl" || 
-               fileName.right(4)==".odl";
-  insideJava = fileName.right(5)==".java" || fileName.right(3)==".as";
-  insideCS   = fileName.right(3)==".cs"; // for normal keywords add colon
-  insideD    = fileName.right(2)==".d"; // for normal keywords add colon
-  insidePHP  = fileName.right(4)==".php" || fileName.right(5)==".php4" || 
-               fileName.right(4)==".inc" || fileName.right(6)==".phtml";
-  insideObjC = fileName.right(2)==".m" || fileName.right(2)==".M" ||
-               fileName.right(3)==".mm";
+  SrcLangExt langExt = getLanguageFromFileName(fileName);
+  insideIDL  = langExt==SrcLangExt_IDL;
+  insideJava = langExt==SrcLangExt_Java;
+  insideCS   = langExt==SrcLangExt_CSharp; 
+  insideD    = langExt==SrcLangExt_D;
+  insidePHP  = langExt==SrcLangExt_PHP;
+  insideObjC = langExt==SrcLangExt_ObjC;
   if ( insidePHP )
   {
     useOverrideCommands = TRUE;
diff --git a/src/translator_jp.h b/src/translator_jp.h
index f6216df..87bc077 100644
--- a/src/translator_jp.h
+++ b/src/translator_jp.h
@@ -29,7 +29,7 @@
 #ifndef TRANSLATOR_JP_H
 #define TRANSLATOR_JP_H
 
-class TranslatorJapanese : public TranslatorAdapter_1_3_9
+class TranslatorJapanese : public Translator
 {
  private:
   /*! The decode() can change euc into sjis */
diff --git a/src/util.cpp b/src/util.cpp
index e07536a..50e0fb3 100644
--- a/src/util.cpp
+++ b/src/util.cpp
@@ -4277,7 +4277,7 @@ QCString convertNameToFile(const char *name,bool allowDots)
   static bool shortNames = Config_getBool("SHORT_NAMES");
   static bool createSubdirs = Config_getBool("CREATE_SUBDIRS");
   QCString result;
-  if (shortNames)
+  if (shortNames) // use short names only
   {
     static QDict<void> usedNames(10007);
     static int count=1;
@@ -4298,6 +4298,16 @@ QCString convertNameToFile(const char *name,bool allowDots)
   else // long names
   {
     result=escapeCharsInString(name,allowDots);
+    int resultLen = result.length();
+    if (resultLen>=128) // prevent names that cannot be created!
+    {
+      // third algorithm based on MD5 hash
+      uchar md5_sig[16];
+      QCString sigStr(33);
+      MD5Buffer((const unsigned char *)result.data(),resultLen,md5_sig);
+      MD5SigToString(md5_sig,sigStr.data(),33);
+      result=result.left(128-32)+sigStr; 
+    }
   }
   if (createSubdirs)
   {
@@ -5648,3 +5658,41 @@ void stringToSearchIndex(const QCString &docBaseUrl,const QCString &title,
   }
 }
 
+SrcLangExt getLanguageFromFileName(const QCString fileName)
+{
+  int i = fileName.findRev('.');
+  static bool init=FALSE;
+  static QDict<void> extLookup;
+  if (!init) // one time initialization
+  {
+    extLookup.insert(".idl",   (void*)SrcLangExt_IDL);
+    extLookup.insert(".odl",   (void*)SrcLangExt_IDL);
+    extLookup.insert(".java",  (void*)SrcLangExt_Java);
+    extLookup.insert(".as",    (void*)SrcLangExt_Java);
+    extLookup.insert(".cs",    (void*)SrcLangExt_CSharp);
+    extLookup.insert(".d",     (void*)SrcLangExt_D);
+    extLookup.insert(".php",   (void*)SrcLangExt_PHP);
+    extLookup.insert(".php4",  (void*)SrcLangExt_PHP);
+    extLookup.insert(".inc",   (void*)SrcLangExt_PHP);
+    extLookup.insert(".phtml", (void*)SrcLangExt_PHP);
+    extLookup.insert(".m",     (void*)SrcLangExt_ObjC);
+    extLookup.insert(".M",     (void*)SrcLangExt_ObjC);
+    extLookup.insert(".mm",    (void*)SrcLangExt_ObjC);
+    init=TRUE;
+  }
+  if (i!=-1) // name has an extension
+  {
+    QCString extStr=fileName.right(fileName.length()-i);
+    if (!extStr.isEmpty()) // non-empty extension
+    {
+      void *pVal=extLookup.find(extStr);
+      if (pVal) // listed extension
+      {
+        return *(SrcLangExt*)&pVal; // cast void* address to enum value
+      }
+    }
+  }
+  return SrcLangExt_Cpp; // not listed => assume C-ish language.
+}
+
+
diff --git a/src/util.h b/src/util.h
index 6381a40..00d52ee 100644
--- a/src/util.h
+++ b/src/util.h
@@ -240,5 +240,19 @@ void stringToSearchIndex(const QCString &docUrlBase,const QCString &title,
                          const QCString &str, bool priority=FALSE,
                          const QCString &anchor="");
 
+enum SrcLangExt
+{
+  SrcLangExt_IDL    = 0x008,
+  SrcLangExt_Java   = 0x010,
+  SrcLangExt_CSharp = 0x020,
+  SrcLangExt_D      = 0x040,
+  SrcLangExt_PHP    = 0x080,
+  SrcLangExt_ObjC   = 0x100,
+  SrcLangExt_Cpp    = 0x200,
+};
+
+SrcLangExt getLanguageFromFileName(const QCString fileName);
+
+
 #endif