Release-1.3.4-20031103

32 files changed, 434 insertions, 267 deletions

diff --git a/INSTALL b/INSTALL
index a2f15a9..8313d23 100644
--- a/INSTALL
+++ b/INSTALL
@@ -1,7 +1,7 @@
-DOXYGEN Version 1.3.4-20031026
+DOXYGEN Version 1.3.4-20031103
 
 Please read the installation section of the manual 
 (http://www.doxygen.org/install.html) for instructions.
 
 --------
-Dimitri van Heesch (26 October 2003)
+Dimitri van Heesch (03 November 2003)
diff --git a/README b/README
index 84a1061..6586b8a 100644
--- a/README
+++ b/README
@@ -1,4 +1,4 @@
-DOXYGEN Version 1.3.4_20031026
+DOXYGEN Version 1.3.4_20031103
 
 Please read INSTALL for compilation instructions.
 
@@ -17,4 +17,4 @@ to subscribe to the lists or to visit the archives.
 
 Enjoy,
 
-Dimitri van Heesch (dimitri@stack.nl) (26 October 2003)
+Dimitri van Heesch (dimitri@stack.nl) (03 November 2003)
diff --git a/VERSION b/VERSION
index 00a63fb..d070c72 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-1.3.4-20031026
+1.3.4-20031103
diff --git a/addon/doxmlparser/include/doxmlintf.h b/addon/doxmlparser/include/doxmlintf.h
index 51a6191..e79946d 100644
--- a/addon/doxmlparser/include/doxmlintf.h
+++ b/addon/doxmlparser/include/doxmlintf.h
@@ -111,7 +111,11 @@ class IMemberReference
 {
   public:
     virtual IMember *member() const = 0;
-    virtual const IString * memberName() const = 0;
+    virtual const IString * name() const = 0;
+    virtual const IString * scope() const = 0;
+    virtual const IString * protection() const = 0;
+    virtual const IString * virtualness() const = 0;
+    virtual const IString * ambiguityScope() const = 0;
 };
 
 class IMemberReferenceIterator 
@@ -695,6 +699,11 @@ class ISection
       ProSlots,            //!< Protected slots
       ProStatFuncs,        //!< Protected static member functions
       ProStatAttribs,      //!< Protected static member attributes
+      PacTypes,            //!< Package member typedefs
+      PacFuncs,            //!< Package member functions
+      PacAttribs,          //!< Package member attributes
+      PacStatFuncs,        //!< Package static member functions
+      PacStatAttribs,      //!< Package static member attributes
       PriTypes,            //!< Private member typedefs
       PriFuncs,            //!< Private member functions
       PriAttribs,          //!< Private member attributes
diff --git a/addon/doxmlparser/src/compoundhandler.cpp b/addon/doxmlparser/src/compoundhandler.cpp
index 5667844..e603975 100644
--- a/addon/doxmlparser/src/compoundhandler.cpp
+++ b/addon/doxmlparser/src/compoundhandler.cpp
@@ -167,46 +167,51 @@ CompoundHandler::CompoundHandler(const QString &xmlDir)
   addStartHandler("compoundname");
   addEndHandler("compoundname",this,&CompoundHandler::endCompoundName);
 
-  addStartHandler("derivedcompoundref",this,&CompoundHandler::addSubClass);
-  addEndHandler("derivedcompoundref");
+  addStartHandler("title",this,&CompoundHandler::startTitle);
 
   addStartHandler("basecompoundref",this,&CompoundHandler::addSuperClass);
   addEndHandler("basecompoundref");
 
-  addStartHandler("briefdescription",this,&CompoundHandler::startBriefDesc);
+  addStartHandler("derivedcompoundref",this,&CompoundHandler::addSubClass);
+  addEndHandler("derivedcompoundref");
 
-  addStartHandler("detaileddescription",this,&CompoundHandler::startDetailedDesc);
-  
-  addStartHandler("sectiondef",this,&CompoundHandler::startSection);
+  // includes
+  // includedby
   
-  addStartHandler("location",this,&CompoundHandler::startLocation);
-  addEndHandler("location");
-
-  addStartHandler("programlisting",this,&CompoundHandler::startProgramListing);
-
-  addStartHandler("inheritancegraph",this,&CompoundHandler::startInheritanceGraph);
-
-  addStartHandler("collaborationgraph",this,&CompoundHandler::startCollaborationGraph);
-
   addStartHandler("incdepgraph",this,&CompoundHandler::startIncludeDependencyGraph);
 
   addStartHandler("invincdepgraph",this,&CompoundHandler::startIncludedByDependencyGraph);
 
+  addStartHandler("innerfile",this,&CompoundHandler::startInnerFile);
+  addEndHandler("innerfile");
+
   addStartHandler("innerclass",this,&CompoundHandler::startInnerClass);
   addEndHandler("innerclass");
 
   addStartHandler("innernamespace",this,&CompoundHandler::startInnerNamespace);
   addEndHandler("innernamespace");
 
-  addStartHandler("innerfile",this,&CompoundHandler::startInnerFile);
-  addEndHandler("innerfile");
-
+  // innerpage
+  
   addStartHandler("innergroup",this,&CompoundHandler::startInnerGroup);
   addEndHandler("innergroup");
 
   addStartHandler("templateparamlist",this,&CompoundHandler::startTemplateParamList);
 
-  addStartHandler("title",this,&CompoundHandler::startTitle);
+  addStartHandler("sectiondef",this,&CompoundHandler::startSection);
+
+  addStartHandler("briefdescription",this,&CompoundHandler::startBriefDesc);
+
+  addStartHandler("detaileddescription",this,&CompoundHandler::startDetailedDesc);
+  
+  addStartHandler("inheritancegraph",this,&CompoundHandler::startInheritanceGraph);
+  
+  addStartHandler("collaborationgraph",this,&CompoundHandler::startCollaborationGraph);
+
+  addStartHandler("programlisting",this,&CompoundHandler::startProgramListing);
+
+  addStartHandler("location",this,&CompoundHandler::startLocation);
+  addEndHandler("location");
 
   addStartHandler("listofallmembers",this,&CompoundHandler::startListOfAllMembers);
 }
@@ -259,6 +264,7 @@ void CompoundHandler::startCompound(const QXmlAttributes& attrib)
   m_id = attrib.value("id");
   m_kindString = attrib.value("kind");
   m_kind = s_typeMap->map(m_kindString);
+  m_protection = attrib.value("prot");
   debug(2,"startCompound(id=`%s' type=`%s')\n",m_id.data(),m_kindString.data());
 }
 
@@ -317,9 +323,14 @@ void CompoundHandler::addSuperClass(const QXmlAttributes& attrib)
 {
   IRelatedCompound::Protection prot = IRelatedCompound::Public;
   QString protString = attrib.value("prot");
-  if (protString=="protected") prot = IRelatedCompound::Protected;
-  else if (protString=="private") prot = IRelatedCompound::Private;
-
+  if (protString=="protected") 
+  {
+    prot = IRelatedCompound::Protected;
+  }
+  else if (protString=="private") 
+  {
+    prot = IRelatedCompound::Private;
+  }
   IRelatedCompound::Kind kind = IRelatedCompound::Normal;
   QString kindString = attrib.value("virt");
   if (kindString=="virtual") kind = IRelatedCompound::Virtual;
diff --git a/addon/doxmlparser/src/compoundhandler.h b/addon/doxmlparser/src/compoundhandler.h
index 3f6e251..5cdca35 100644
--- a/addon/doxmlparser/src/compoundhandler.h
+++ b/addon/doxmlparser/src/compoundhandler.h
@@ -153,6 +153,7 @@ class CompoundHandler : public IClass,
     DocHandler*                    m_detailed;
     ProgramListingHandler*         m_programListing;
     StringImpl                     m_id;
+    StringImpl                     m_protection;
     StringImpl                     m_kindString;
     CompoundKind                   m_kind;
     StringImpl                     m_name;
diff --git a/addon/doxmlparser/src/doxmlintf.h b/addon/doxmlparser/src/doxmlintf.h
index 51a6191..e79946d 100644
--- a/addon/doxmlparser/src/doxmlintf.h
+++ b/addon/doxmlparser/src/doxmlintf.h
@@ -111,7 +111,11 @@ class IMemberReference
 {
   public:
     virtual IMember *member() const = 0;
-    virtual const IString * memberName() const = 0;
+    virtual const IString * name() const = 0;
+    virtual const IString * scope() const = 0;
+    virtual const IString * protection() const = 0;
+    virtual const IString * virtualness() const = 0;
+    virtual const IString * ambiguityScope() const = 0;
 };
 
 class IMemberReferenceIterator 
@@ -695,6 +699,11 @@ class ISection
       ProSlots,            //!< Protected slots
       ProStatFuncs,        //!< Protected static member functions
       ProStatAttribs,      //!< Protected static member attributes
+      PacTypes,            //!< Package member typedefs
+      PacFuncs,            //!< Package member functions
+      PacAttribs,          //!< Package member attributes
+      PacStatFuncs,        //!< Package static member functions
+      PacStatAttribs,      //!< Package static member attributes
       PriTypes,            //!< Private member typedefs
       PriFuncs,            //!< Private member functions
       PriAttribs,          //!< Private member attributes
diff --git a/addon/doxmlparser/src/loamhandler.cpp b/addon/doxmlparser/src/loamhandler.cpp
index de726c1..a939b7b 100644
--- a/addon/doxmlparser/src/loamhandler.cpp
+++ b/addon/doxmlparser/src/loamhandler.cpp
@@ -9,6 +9,8 @@ ListOfAllMembersHandler::ListOfAllMembersHandler(IBaseHandler *parent) : m_paren
   addStartHandler("member",this,&ListOfAllMembersHandler::startMember);
   addStartHandler("name",this,&ListOfAllMembersHandler::startName);
   addEndHandler("name",this,&ListOfAllMembersHandler::endName);
+  addStartHandler("scope",this,&ListOfAllMembersHandler::startScope);
+  addEndHandler("scope",this,&ListOfAllMembersHandler::endScope);
 
   addEndHandler("listofallmembers",this,&ListOfAllMembersHandler::endListOfAllMembers);
 }
@@ -27,7 +29,9 @@ void ListOfAllMembersHandler::startMember(const QXmlAttributes& attrib)
 {
   MemberReference *mr = new MemberReference;
   mr->m_memId = attrib.value("refid");
-  // TODO: extract prot, virt, ambiguityscope and scope as well
+  mr->m_virtualness = attrib.value("virt");
+  mr->m_protection = attrib.value("prot");
+  mr->m_ambiguityScope = attrib.value("ambiguityscope");
   m_members.append(new MemberReference);
 }
 
@@ -42,6 +46,17 @@ void ListOfAllMembersHandler::endName()
   m_members.getLast()->m_name = m_curString;
 }
 
+void ListOfAllMembersHandler::startScope(const QXmlAttributes&)
+{
+  m_curString="";
+}
+
+void ListOfAllMembersHandler::endScope()
+{
+  ASSERT(m_members.getLast());
+  m_members.getLast()->m_scope = m_curString;
+}
+
 void ListOfAllMembersHandler::startListOfAllMembers(const QXmlAttributes& /*attrib*/)
 {
   m_parent->setDelegate(this);
diff --git a/addon/doxmlparser/src/loamhandler.h b/addon/doxmlparser/src/loamhandler.h
index f7e5a3f..f03c541 100644
--- a/addon/doxmlparser/src/loamhandler.h
+++ b/addon/doxmlparser/src/loamhandler.h
@@ -31,6 +31,8 @@ class ListOfAllMembersHandler : public BaseHandler<ListOfAllMembersHandler>
     virtual void startMember(const QXmlAttributes& attrib);
     virtual void startName(const QXmlAttributes& attrib);
     virtual void endName();
+    virtual void startScope(const QXmlAttributes& attrib);
+    virtual void endScope();
     virtual void startListOfAllMembers(const QXmlAttributes& attrib);
     virtual void endListOfAllMembers();
 
diff --git a/addon/doxmlparser/src/memberhandler.cpp b/addon/doxmlparser/src/memberhandler.cpp
index a46df85..2ea5e4b 100644
--- a/addon/doxmlparser/src/memberhandler.cpp
+++ b/addon/doxmlparser/src/memberhandler.cpp
@@ -158,40 +158,45 @@ MemberHandler::MemberHandler(IBaseHandler *parent)
 {
   //printf("MemberHandler::MemberHandler() %p\n",this);
   addEndHandler("memberdef",this,&MemberHandler::endMember);
-  addEndHandler("enumvalue",this,&MemberHandler::endMember);
 
-  addStartHandler("type",this,&MemberHandler::startType);
-  addStartHandler("initializer",this,&MemberHandler::startInitializer);
-  addStartHandler("exception",this,&MemberHandler::startException);
-  addStartHandler("enumvalue",this,&MemberHandler::startEnumValue2);
+  addStartHandler("templateparamlist",this,&MemberHandler::startTemplateParamList);
+  addEndHandler("templateparamlist",this,&MemberHandler::endTemplateParamList);
 
+  addStartHandler("type",this,&MemberHandler::startType);
+  // definition
+  // argsstring
   addStartHandler("name",this,&MemberHandler::startName);
   addEndHandler("name",this,&MemberHandler::endName);
 
+  addStartHandler("reimplements",this,&MemberHandler::startReimplements);
+  addEndHandler("reimplements",this,&MemberHandler::endReimplements);
+  
+  addStartHandler("reimplementedby",this,&MemberHandler::startReimplementedBy);
+  addEndHandler("reimplementedby",this,&MemberHandler::endReimplementedBy);
+
   addStartHandler("param",this,&MemberHandler::startParam);
 
+  addStartHandler("enumvalue",this,&MemberHandler::startEnumValue2);
+  addEndHandler("enumvalue",this,&MemberHandler::endMember);
+
+  addStartHandler("initializer",this,&MemberHandler::startInitializer);
+  addStartHandler("exception",this,&MemberHandler::startException);
+
   addStartHandler("briefdescription",this,&MemberHandler::startBriefDesc);
 
   addStartHandler("detaileddescription",this,&MemberHandler::startDetailedDesc);
 
+  // inbodydescription
+  
+  addStartHandler("location",this,&MemberHandler::startLocation);
+  addEndHandler("location");
+
   addStartHandler("references",this,&MemberHandler::startReferences);
   addEndHandler("references",this,&MemberHandler::endReferences);
   
   addStartHandler("referencedby",this,&MemberHandler::startReferencedBy);
   addEndHandler("referencedby",this,&MemberHandler::endReferencedBy);
 
-  addStartHandler("reimplements",this,&MemberHandler::startReimplements);
-  addEndHandler("reimplements",this,&MemberHandler::endReimplements);
-  
-  addStartHandler("reimplementedby",this,&MemberHandler::startReimplementedBy);
-  addEndHandler("reimplementedby",this,&MemberHandler::endReimplementedBy);
-
-  addStartHandler("location",this,&MemberHandler::startLocation);
-  addEndHandler("location");
-
-  addStartHandler("templateparamlist",this,&MemberHandler::startTemplateParamList);
-  addEndHandler("templateparamlist",this,&MemberHandler::endTemplateParamList);
-
   m_type.setAutoDelete(TRUE);
   m_initializer.setAutoDelete(TRUE);
   m_exception.setAutoDelete(TRUE);
diff --git a/addon/doxmlparser/src/memberhandler.h b/addon/doxmlparser/src/memberhandler.h
index 213030b..1a02df3 100644
--- a/addon/doxmlparser/src/memberhandler.h
+++ b/addon/doxmlparser/src/memberhandler.h
@@ -38,11 +38,19 @@ class MemberReference : public IMemberReference
   public:
     virtual ~MemberReference() {}
     virtual IMember *member() const;
-    virtual const IString *memberName() const { return &m_name; }
+    virtual const IString *name() const { return &m_name; }
+    virtual const IString *scope() const { return &m_scope; }
+    virtual const IString *protection() const { return &m_protection; }
+    virtual const IString *virtualness() const { return &m_virtualness; }
+    virtual const IString *ambiguityScope() const { return &m_ambiguityScope; }
     void initialize(MainHandler *m);
 
     QString      m_memId;
     StringImpl   m_name;
+    StringImpl   m_scope;
+    StringImpl   m_virtualness;
+    StringImpl   m_protection;
+    StringImpl   m_ambiguityScope;
     MainHandler *m_mainHandler;
 };
 
diff --git a/addon/doxmlparser/src/sectionhandler.cpp b/addon/doxmlparser/src/sectionhandler.cpp
index 5da0006..0703de1 100644
--- a/addon/doxmlparser/src/sectionhandler.cpp
+++ b/addon/doxmlparser/src/sectionhandler.cpp
@@ -41,6 +41,11 @@ class SectionTypeMap
       m_map.insert("protected-slot",new int(ISection::ProSlots));
       m_map.insert("protected-static-func",new int(ISection::ProStatFuncs));
       m_map.insert("protected-static-attrib",new int(ISection::ProStatAttribs));
+      m_map.insert("package-type",new int(ISection::PacTypes));
+      m_map.insert("package-func",new int(ISection::PacFuncs));
+      m_map.insert("package-attrib",new int(ISection::PacAttribs));
+      m_map.insert("package-static-func",new int(ISection::PacStatFuncs));
+      m_map.insert("package-static-attrib",new int(ISection::PacStatAttribs));
       m_map.insert("private-type",new int(ISection::PriTypes));
       m_map.insert("private-func",new int(ISection::PriFuncs));
       m_map.insert("private-attrib",new int(ISection::PriAttribs));
diff --git a/libmd5/md5_loc.h b/libmd5/md5_loc.h
index 03aeebf..3d6e2b6 100644
--- a/libmd5/md5_loc.h
+++ b/libmd5/md5_loc.h
@@ -30,6 +30,10 @@
 #ifndef __MD5_LOC_H__
 #define __MD5_LOC_H__
 
+#ifdef __cplusplus
+extern "C" {
+#endif
+
 #define HEX_STRING	"0123456789abcdef"	/* to convert to hex */
 #define BLOCK_SIZE_MASK	(MD5_BLOCK_SIZE - 1)
 
@@ -103,4 +107,8 @@
       a += b;						\
     } while (0)
 
+#ifdef __cplusplus
+}
+#endif
+
 #endif /* ! __MD5_LOC_H__ */
diff --git a/make.bat b/make.bat
index 56fd9e0..a985bea 100644
--- a/make.bat
+++ b/make.bat
@@ -22,6 +22,8 @@ type makeconfig                   > qtools\Makefile
 type qtools\Makefile.in           >>qtools\Makefile
 type makeconfig                   > libpng\Makefile
 type libpng\Makefile.in           >>libpng\Makefile
+type makeconfig                   > libmd5\Makefile
+type libmd5\Makefile.in           >>libmd5\Makefile
 type makeconfig                   > src\Makefile
 type src\Makefile.in              >>src\Makefile
 type makeconfig                   > examples\Makefile
@@ -37,11 +39,11 @@ REM build in release or debug mode
 REM sed is used to replace $extraopts by either debug or release while copying
 sed "s/\$extraopts/%MODE%/g" qtools\qtools.pro.in >qtools\qtools.pro
 sed "s/\$extraopts/%MODE%/g" libpng\libpng.pro.in >libpng\libpng.pro
+sed "s/\$extraopts/%MODE%/g" libmd5\libmd5.pro.in >libmd5\libmd5.pro
 sed "s/\$extraopts/%MODE%/g" src\libdoxygen.pro.in >src\libdoxygen.pro
 sed "s/\$extraopts/%MODE%/g" src\libdoxycfg.pro.in >src\libdoxycfg.pro
 sed "s/\$extraopts/%MODE%/g" src\doxygen.pro.in >src\doxygen.pro
 sed "s/\$extraopts/%MODE%/g" src\doxytag.pro.in >src\doxytag.pro
-sed "s/\$extraopts/%MODE%/g" src\doxysearch.pro.in >src\doxysearch.pro
 sed "s/\$extraopts/%MODE%/g" addon\doxywizard\doxywizard.pro.in >addon\doxywizard\doxywizard.pro
 
 REM run make
diff --git a/packages/rpm/doxygen.spec b/packages/rpm/doxygen.spec
index ce08c50..0e37b03 100644
--- a/packages/rpm/doxygen.spec
+++ b/packages/rpm/doxygen.spec
@@ -1,6 +1,6 @@
 Summary: A documentation system for C/C++.
 Name: doxygen
-Version: 1.3.4_20031026
+Version: 1.3.4_20031103
 Release: 1
 Epoch: 1
 Source0: ftp://ftp.stack.nl/pub/users/dimitri/%{name}-%{version}.src.tar.gz
diff --git a/qtools/qfile.cpp b/qtools/qfile.cpp
index 2222b5b..98ed9a3 100644
--- a/qtools/qfile.cpp
+++ b/qtools/qfile.cpp
@@ -208,7 +208,7 @@ bool QFile::remove()
     return remove( fn );
 }
 
-#if defined(_OS_MAC_) || defined(_OS_MSDOS_) || defined(_OS_WIN32_) || defined(_OS_OS2_)
+#if defined(_OS_MAC_) || defined(_OS_MSDOS_) || defined(_OS_WIN32_) || defined(_OS_OS2_) || defined(_OS_CYGWIN_)
 # define HAS_TEXT_FILEMODE			// has translate/text filemode
 #endif
 #if defined(O_NONBLOCK)
diff --git a/qtools/qfile_unix.cpp b/qtools/qfile_unix.cpp
index 74b73d2..43424b1 100644
--- a/qtools/qfile_unix.cpp
+++ b/qtools/qfile_unix.cpp
@@ -40,7 +40,7 @@
 #include "qfile.h"
 #include "qfiledefs_p.h"
 
-#if defined(_OS_MAC_) || defined(_OS_MSDOS_) || defined(_OS_WIN32_) || defined(_OS_OS2_)
+#if defined(_OS_MAC_) || defined(_OS_MSDOS_) || defined(_OS_WIN32_) || defined(_OS_OS2_) || defined(_OS_CYGWIN_)
 # define HAS_TEXT_FILEMODE			// has translate/text filemode
 #endif
 #if defined(O_NONBLOCK)
diff --git a/src/compound.xsd b/src/compound.xsd
index f445278..fa1ea92 100644
--- a/src/compound.xsd
+++ b/src/compound.xsd
@@ -93,6 +93,7 @@
 
   <xsd:complexType name="memberdefType">
     <xsd:sequence>
+      <xsd:element name="templateparamlist" type="templateparamlistType" minOccurs="0" />
       <xsd:element name="type" type="linkedTextType" minOccurs="0" />
       <xsd:element name="definition" minOccurs="0" />
       <xsd:element name="argsstring" minOccurs="0" />
@@ -632,6 +633,11 @@
       <xsd:enumeration value="protected-slot" />
       <xsd:enumeration value="protected-static-func" />
       <xsd:enumeration value="protected-static-attrib" />
+      <xsd:enumeration value="package-type" />
+      <xsd:enumeration value="package-func" />
+      <xsd:enumeration value="package-attrib" />
+      <xsd:enumeration value="package-static-func" />
+      <xsd:enumeration value="package-static-attrib" />
       <xsd:enumeration value="private-type" />
       <xsd:enumeration value="private-func" />
       <xsd:enumeration value="private-attrib" />
diff --git a/src/compound_xsd.h b/src/compound_xsd.h
index 085e0a8..bef2c61 100644
--- a/src/compound_xsd.h
+++ b/src/compound_xsd.h
@@ -93,6 +93,7 @@
 "\n"
 "  <xsd:complexType name=\"memberdefType\">\n"
 "    <xsd:sequence>\n"
+"      <xsd:element name=\"templateparamlist\" type=\"templateparamlistType\" minOccurs=\"0\" />\n"
 "      <xsd:element name=\"type\" type=\"linkedTextType\" minOccurs=\"0\" />\n"
 "      <xsd:element name=\"definition\" minOccurs=\"0\" />\n"
 "      <xsd:element name=\"argsstring\" minOccurs=\"0\" />\n"
@@ -632,6 +633,11 @@
 "      <xsd:enumeration value=\"protected-slot\" />\n"
 "      <xsd:enumeration value=\"protected-static-func\" />\n"
 "      <xsd:enumeration value=\"protected-static-attrib\" />\n"
+"      <xsd:enumeration value=\"package-type\" />\n"
+"      <xsd:enumeration value=\"package-func\" />\n"
+"      <xsd:enumeration value=\"package-attrib\" />\n"
+"      <xsd:enumeration value=\"package-static-func\" />\n"
+"      <xsd:enumeration value=\"package-static-attrib\" />\n"
 "      <xsd:enumeration value=\"private-type\" />\n"
 "      <xsd:enumeration value=\"private-func\" />\n"
 "      <xsd:enumeration value=\"private-attrib\" />\n"
diff --git a/src/config.l b/src/config.l
index 739f5f1..594cbc2 100644
--- a/src/config.l
+++ b/src/config.l
@@ -1979,7 +1979,9 @@ void Config::create()
                     "The HTML_STYLESHEET tag can be used to specify a user-defined cascading \n"
                     "style sheet that is used by each HTML page. It can be used to \n"
                     "fine-tune the look of the HTML output. If the tag is left blank doxygen \n"
-                    "will generate a default style sheet \n"
+                    "will generate a default style sheet. Note that doxygen will try to copy \n"
+		    "the style sheet file to the HTML output directory, so don't put your own \n"
+		    "stylesheet in the HTML output directory as well, or it will be erased! \n"
                    );
   cs->setWidgetType(ConfigString::File);
   cs->addDependency("GENERATE_HTML");
diff --git a/src/docparser.cpp b/src/docparser.cpp
index c324dc0..1ee90f5 100644
--- a/src/docparser.cpp
+++ b/src/docparser.cpp
@@ -701,6 +701,7 @@ static void handleLinkedWord(DocNode *parent,QList<DocNode> &children)
   QString name = linkToText(g_token->name,TRUE);
   if (resolveRef(g_context,g_token->name,g_inSeeBlock,&compound,&member))
   {
+    //printf("resolveRef %s = %p (linkable?=%d)\n",g_token->name.data(),member,member->isLinkable());
     if (member) // member link
     {
       children.append(new 
diff --git a/src/dot.cpp b/src/dot.cpp
index 1b506b1..efaf077 100644
--- a/src/dot.cpp
+++ b/src/dot.cpp
@@ -295,6 +295,36 @@ static void checkDotResult(const QCString &imgName)
   }
 }
 
+/*! Checks if a file "baseName".md5 exists. If so the contents
+ *  are compared with \a md5. If equal FALSE is returned. If the .md5
+ *  file does not exist or its contents are not equal to \a md5, 
+ *  a new .md5 is generated with the \a md5 string as contents.
+ */
+static bool checkAndUpdateMd5Signature(const QCString &baseName,const QCString &md5)
+{
+  QFile f(baseName+".md5");
+  if (f.open(IO_ReadOnly))
+  {
+    // read checksum
+    QCString md5stored(33);
+    int bytesRead=f.readBlock(md5stored.data(),32);
+    // compare checksum
+    if (bytesRead==32 && md5==md5stored)
+    {
+      // bail out if equal
+      return FALSE;
+    }
+  }
+  f.close();
+  // create checksum file
+  if (f.open(IO_WriteOnly))
+  {
+    f.writeBlock(md5.data(),32); 
+    f.close();
+  }
+  return TRUE;
+}
+
 //--------------------------------------------------------------------
 
 class DotNodeList : public QList<DotNode>
@@ -880,6 +910,7 @@ void DotGfxHierarchyTable::writeGraph(QTextStream &out,const char *path)
   QDir::setCurrent(d.absPath());
   QDir thisDir;
 
+  // put each connected subgraph of the hierarchy in a row of the HTML output
   out << "<table border=0 cellspacing=10 cellpadding=0>" << endl;
 
   QListIterator<DotNode> dnli(*m_rootSubgraphs);
@@ -891,52 +922,75 @@ void DotGfxHierarchyTable::writeGraph(QTextStream &out,const char *path)
     QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
     baseName.sprintf("inherit_graph_%d",count++);
     baseName = convertNameToFile(baseName);
-    QCString dotName=baseName+".dot";
     QCString imgName=baseName+"."+ imgExt;
     QCString mapName=baseName+".map";
-
-    QFile f(dotName);
-    if (!f.open(IO_WriteOnly)) return;
-    QTextStream t(&f);
-    writeGraphHeader(t);
-    t << "  rankdir=LR;" << endl;
     QListIterator<DotNode> dnli2(*m_rootNodes);
     DotNode *node;
-    for (;(node=dnli2.current());++dnli2)
+
+    // compute md5 checksum of the graph were are about to generate
+    QString buf;
+    QTextStream md5stream(&buf,IO_WriteOnly);
+    for (dnli2.toFirst();(node=dnli2.current());++dnli2)
     {
       if (node->m_subgraphId==n->m_subgraphId) 
-        node->write(t,DotNode::Hierarchy,BITMAP,FALSE,TRUE,1000,TRUE);
+      {
+        node->clearWriteFlag();
+        node->write(md5stream,DotNode::Hierarchy,BITMAP,FALSE,TRUE,1000,TRUE);
+      }
     }
-    writeGraphFooter(t);
-    f.close();
+    char md5_sig[16];
+    QCString sigStr(33);
+    md5_buffer(buf.ascii(),buf.length(),md5_sig);
+    md5_sig_to_string(md5_sig,sigStr.data(),33);
+    if (checkAndUpdateMd5Signature(baseName,sigStr))
+    { 
+      // image was new or has changed
+      QCString dotName=baseName+".dot";
+      QFile f(dotName);
+      if (!f.open(IO_WriteOnly)) return;
+      QTextStream t(&f);
+      writeGraphHeader(t);
+      t << "  rankdir=LR;" << endl;
+      for (dnli2.toFirst();(node=dnli2.current());++dnli2)
+      {
+        if (node->m_subgraphId==n->m_subgraphId) 
+        {
+          node->clearWriteFlag();
+          node->write(t,DotNode::Hierarchy,BITMAP,FALSE,TRUE,1000,TRUE);
+        }
+      }
+      writeGraphFooter(t);
+      f.close();
 
-    QCString dotArgs(maxCmdLine);
-    dotArgs.sprintf("-T%s \"%s\" -o \"%s\"",
-           imgExt.data(), dotName.data(),imgName.data());
-    //printf("Running: dot -T%s %s -o %s\n",imgExt.data(),dotName.data(),imgName.data());
-    if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
-    {
-      err("Problems running dot. Check your installation!\n");
-      out << "</table>" << endl;
-      return;
-    }
-    checkDotResult(imgName);
-    dotArgs.sprintf("-Timap \"%s\" -o \"%s\"",dotName.data(),mapName.data());
-    //printf("Running: dot -Timap %s -o %s\n",dotName.data(),mapName.data());
-    if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
-    {
-      err("Problems running dot. Check your installation!\n");
-      out << "</table>" << endl;
-      return;
+      QCString dotArgs(maxCmdLine);
+      dotArgs.sprintf("-T%s \"%s\" -o \"%s\"",
+          imgExt.data(), dotName.data(),imgName.data());
+      //printf("Running: dot -T%s %s -o %s\n",imgExt.data(),dotName.data(),imgName.data());
+      if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+      {
+        err("Problems running dot. Check your installation!\n");
+        out << "</table>" << endl;
+        return;
+      }
+      checkDotResult(imgName);
+      dotArgs.sprintf("-Timap \"%s\" -o \"%s\"",dotName.data(),mapName.data());
+      //printf("Running: dot -Timap %s -o %s\n",dotName.data(),mapName.data());
+      if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+      {
+        err("Problems running dot. Check your installation!\n");
+        out << "</table>" << endl;
+        return;
+      }
+      if (Config_getBool("DOT_CLEANUP")) thisDir.remove(dotName);
     }
+    // write image and map in a table row
     QCString mapLabel = convertNameToFile(n->m_label);
     out << "<tr><td><img src=\"" << imgName << "\" border=\"0\" alt=\"\" usemap=\"#" 
       << mapLabel << "_map\">" << endl;
     out << "<map name=\"" << mapLabel << "_map\">" << endl;
     convertMapFile(out,mapName);
     out << "</map></td></tr>" << endl;
-    if (Config_getBool("DOT_CLEANUP")) thisDir.remove(dotName);
-    thisDir.remove(mapName);
+    //thisDir.remove(mapName);
   }
   out << "</table>" << endl;
 
@@ -1432,36 +1486,6 @@ QCString computeMd5Signature(DotNode *root,
   return sigStr;
 }
 
-/*! Checks if a file "baseName".md5 exists. If so the contents
- *  are compared with \a md5. If equal FALSE is returned. If the .md5
- *  file does not exist or its contents are not equal to \a md5, 
- *  a new .md5 is generated with the \a md5 string as contents.
- */
-static bool checkAndUpdateMd5Signature(const QCString &baseName,const QCString &md5)
-{
-  QFile f(baseName+".md5");
-  if (f.open(IO_ReadOnly))
-  {
-    // read checksum
-    QCString md5stored(33);
-    int bytesRead=f.readBlock(md5stored.data(),32);
-    // compare checksum
-    if (bytesRead==32 && md5==md5stored)
-    {
-      // bail out if equal
-      return FALSE;
-    }
-  }
-  f.close();
-  // create checksum file
-  if (f.open(IO_WriteOnly))
-  {
-    f.writeBlock(md5.data(),32); 
-    f.close();
-  }
-  return TRUE;
-}
-
 static bool findMaximalDotGraph(DotNode *root,
                                 int maxDist,
                                 const QCString &baseName,
@@ -1606,14 +1630,13 @@ QCString DotClassGraph::writeGraph(QTextStream &out,
   baseName = convertNameToFile(diskName());
 
 
+  QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
   if (findMaximalDotGraph(m_startNode,QMIN(m_recDepth,m_maxDistance),baseName,
         thisDir,m_graphType,format,!isTBRank,m_graphType==DotNode::Inheritance))
   {
-
     if (format==BITMAP) // run dot to create a bitmap image
     {
       QCString dotArgs(maxCmdLine);
-      QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
       QCString imgName = baseName+"."+imgExt;
       dotArgs.sprintf("-T%s \"%s.dot\" -o \"%s\"",
           imgExt.data(),baseName.data(),imgName.data());
@@ -1634,36 +1657,6 @@ QCString DotClassGraph::writeGraph(QTextStream &out,
           QDir::setCurrent(oldDir);
           return baseName;
         }
-        QCString mapLabel = convertNameToFile(m_startNode->m_label+"_"+mapName);
-        out << "<p><center><img src=\"" << baseName << "." 
-          << imgExt << "\" border=\"0\" usemap=\"#"
-          << mapLabel << "\" alt=\"";
-        switch (m_graphType)
-        {
-          case DotNode::Collaboration:
-            out << "Collaboration graph";
-            break;
-            //case Interface:
-            //  out << "Interface dependency graph";
-            //  break;
-          case DotNode::Inheritance:
-            out << "Inheritance graph";
-            break;
-          default:
-            ASSERT(0);
-            break;
-        }
-        out << "\"></center>" << endl;
-        QString tmpstr;
-        QTextOStream tmpout(&tmpstr);
-        convertMapFile(tmpout,baseName+".map");
-        if (!tmpstr.isEmpty())
-        {
-          out << "<map name=\"" << mapLabel << "\">" << endl;
-          out << tmpstr;
-          out << "</map>" << endl;
-        }
-        thisDir.remove(baseName+".map");
       }
     }
     else if (format==EPS) // run dot to create a .eps image
@@ -1676,13 +1669,6 @@ QCString DotClassGraph::writeGraph(QTextStream &out,
         QDir::setCurrent(oldDir);
         return baseName;
       }
-      int width,height;
-      if (!readBoundingBoxEPS(baseName+".eps",&width,&height))
-      {
-        err("Error: Could not extract bounding box from .eps!\n");
-        QDir::setCurrent(oldDir);
-        return baseName;
-      }
       if (Config_getBool("USE_PDFLATEX"))
       {
         QCString epstopdfArgs(maxCmdLine);
@@ -1695,8 +1681,51 @@ QCString DotClassGraph::writeGraph(QTextStream &out,
           return baseName;
         }
       }
-      int maxWidth = 420; /* approx. page width in points */
 
+    }
+    if (Config_getBool("DOT_CLEANUP")) thisDir.remove(baseName+".dot");
+  }
+
+  if (format==BITMAP) // run dot to create a bitmap image
+  {
+    QCString mapLabel = convertNameToFile(m_startNode->m_label+"_"+mapName);
+    out << "<p><center><img src=\"" << baseName << "." 
+      << imgExt << "\" border=\"0\" usemap=\"#"
+      << mapLabel << "\" alt=\"";
+    switch (m_graphType)
+    {
+      case DotNode::Collaboration:
+        out << "Collaboration graph";
+        break;
+      case DotNode::Inheritance:
+        out << "Inheritance graph";
+        break;
+      default:
+        ASSERT(0);
+        break;
+    }
+    out << "\"></center>" << endl;
+    QString tmpstr;
+    QTextOStream tmpout(&tmpstr);
+    convertMapFile(tmpout,baseName+".map");
+    if (!tmpstr.isEmpty())
+    {
+      out << "<map name=\"" << mapLabel << "\">" << endl;
+      out << tmpstr;
+      out << "</map>" << endl;
+    }
+    //thisDir.remove(baseName+".map");
+  }
+  else if (format==EPS) // run dot to create a .eps image
+  {
+      int width,height;
+      if (!readBoundingBoxEPS(baseName+".eps",&width,&height))
+      {
+        err("Error: Could not extract bounding box from .eps!\n");
+        QDir::setCurrent(oldDir);
+        return baseName;
+      }
+      int maxWidth = 420; /* approx. page width in points */
       out << "\\begin{figure}[H]\n"
         "\\begin{center}\n"
         "\\leavevmode\n"
@@ -1704,8 +1733,6 @@ QCString DotClassGraph::writeGraph(QTextStream &out,
         << "pt]{" << baseName << "}\n"
         "\\end{center}\n"
         "\\end{figure}\n";
-    }
-    if (Config_getBool("DOT_CLEANUP")) thisDir.remove(baseName+".dot");
   }
 
   QDir::setCurrent(oldDir);
@@ -1850,6 +1877,7 @@ QCString DotInclDepGraph::writeGraph(QTextStream &out,
   baseName=convertNameToFile(baseName);
   QCString mapName=m_startNode->m_label.copy();
   if (m_inverse) mapName+="dep";
+  QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
 
   if (findMaximalDotGraph(m_startNode,QMIN(m_recDepth,m_maxDistance),
                       baseName,thisDir,DotNode::Dependency,format,
@@ -1860,7 +1888,6 @@ QCString DotInclDepGraph::writeGraph(QTextStream &out,
     {
       // run dot to create a bitmap image
       QCString dotArgs(maxCmdLine);
-      QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
       QCString imgName=baseName+"."+imgExt;
       dotArgs.sprintf("-T%s \"%s.dot\" -o \"%s\"",
           imgExt.data(),baseName.data(),imgName.data());
@@ -1884,22 +1911,7 @@ QCString DotInclDepGraph::writeGraph(QTextStream &out,
           return baseName;
         }
 
-        out << "<p><center><img src=\"" << baseName << "." 
-          << imgExt << "\" border=\"0\" usemap=\"#"
-          << mapName << "_map\" alt=\"";
-        if (m_inverse) out << "Included by dependency graph"; else out << "Include dependency graph";
-        out << "\">";
-        out << "</center>" << endl;
-        QString tmpstr;
-        QTextOStream tmpout(&tmpstr);
-        convertMapFile(tmpout,baseName+".map");
-        if (!tmpstr.isEmpty())
-        {
-          out << "<map name=\"" << mapName << "_map\">" << endl;
-          out << tmpstr;
-          out << "</map>" << endl;
-        }
-        thisDir.remove(baseName+".map");
+        //thisDir.remove(baseName+".map");
       }
     }
     else if (format==EPS)
@@ -1914,13 +1926,6 @@ QCString DotInclDepGraph::writeGraph(QTextStream &out,
         QDir::setCurrent(oldDir);
         return baseName;
       }
-      int width,height;
-      if (!readBoundingBoxEPS(baseName+".eps",&width,&height))
-      {
-        err("Error: Could not extract bounding box from .eps!\n");
-        QDir::setCurrent(oldDir);
-        return baseName;
-      }
       if (Config_getBool("USE_PDFLATEX"))
       {
         QCString epstopdfArgs(maxCmdLine);
@@ -1933,22 +1938,50 @@ QCString DotInclDepGraph::writeGraph(QTextStream &out,
           return baseName;
         }
       }
-      int maxWidth = 420; /* approx. page width in points */
-
-      out << "\\begin{figure}[H]\n"
-        "\\begin{center}\n"
-        "\\leavevmode\n"
-        //"\\setlength{\\epsfxsize}{" << QMIN(width/2,maxWidth) << "pt}\n"
-        //"\\epsfbox{" << baseName << ".eps}\n"
-        "\\includegraphics[width=" << QMIN(width/2,maxWidth) 
-        << "pt]{" << baseName << "}\n"
-        "\\end{center}\n"
-        "\\end{figure}\n";
     }
 
     if (Config_getBool("DOT_CLEANUP")) thisDir.remove(baseName+".dot");
   }
 
+  if (format==BITMAP)
+  {
+    out << "<p><center><img src=\"" << baseName << "." 
+      << imgExt << "\" border=\"0\" usemap=\"#"
+      << mapName << "_map\" alt=\"";
+    if (m_inverse) out << "Included by dependency graph"; else out << "Include dependency graph";
+    out << "\">";
+    out << "</center>" << endl;
+    QString tmpstr;
+    QTextOStream tmpout(&tmpstr);
+    convertMapFile(tmpout,baseName+".map");
+    if (!tmpstr.isEmpty())
+    {
+      out << "<map name=\"" << mapName << "_map\">" << endl;
+      out << tmpstr;
+      out << "</map>" << endl;
+    }
+  }
+  else if (format==EPS)
+  {
+    int width,height;
+    if (!readBoundingBoxEPS(baseName+".eps",&width,&height))
+    {
+      err("Error: Could not extract bounding box from .eps!\n");
+      QDir::setCurrent(oldDir);
+      return baseName;
+    }
+
+    int maxWidth = 420; /* approx. page width in points */
+
+    out << "\\begin{figure}[H]\n"
+      "\\begin{center}\n"
+      "\\leavevmode\n"
+      "\\includegraphics[width=" << QMIN(width/2,maxWidth) 
+      << "pt]{" << baseName << "}\n"
+      "\\end{center}\n"
+      "\\end{figure}\n";
+  }
+
   QDir::setCurrent(oldDir);
   return baseName;
 }
@@ -2014,68 +2047,87 @@ QCString DotCallGraph::writeGraph(QTextStream &out, GraphOutputFormat format,
   QCString baseName=m_diskName+"_cgraph";
   //baseName=convertNameToFile(baseName);
   QCString mapName=baseName;
+  QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
 
-  findMaximalDotGraph(m_startNode,QMIN(m_recDepth,m_maxDistance),
+  if (findMaximalDotGraph(m_startNode,QMIN(m_recDepth,m_maxDistance),
                       baseName,thisDir,DotNode::CallGraph,format,
-                      TRUE,FALSE,FALSE);
-
-  if (format==BITMAP)
+                      TRUE,FALSE,FALSE))
   {
-    // run dot to create a bitmap image
-    QCString dotArgs(maxCmdLine);
-    QCString imgExt = Config_getEnum("DOT_IMAGE_FORMAT");
-    QCString imgName=baseName+"."+imgExt;
-    dotArgs.sprintf("-T%s \"%s.dot\" -o \"%s\"",
-                   imgExt.data(),baseName.data(),imgName.data());
-    if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+    if (format==BITMAP)
     {
-      err("Problems running dot. Check your installation!\n");
-      QDir::setCurrent(oldDir);
-      return baseName;
-    }
-    checkDotResult(imgName);
+      // run dot to create a bitmap image
+      QCString dotArgs(maxCmdLine);
+      QCString imgName=baseName+"."+imgExt;
+      dotArgs.sprintf("-T%s \"%s.dot\" -o \"%s\"",
+          imgExt.data(),baseName.data(),imgName.data());
+      if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+      {
+        err("Problems running dot. Check your installation!\n");
+        QDir::setCurrent(oldDir);
+        return baseName;
+      }
+      checkDotResult(imgName);
 
-    if (generateImageMap)
+      if (generateImageMap)
+      {
+        // run dot again to create an image map
+        dotArgs.sprintf("-Timap \"%s.dot\" -o \"%s.map\"",
+            baseName.data(),baseName.data());
+        if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+        {
+          err("Problems running dot. Check your installation!\n");
+          QDir::setCurrent(oldDir);
+          return baseName;
+        }
+      }
+    }
+    else if (format==EPS)
     {
-      // run dot again to create an image map
-      dotArgs.sprintf("-Timap \"%s.dot\" -o \"%s.map\"",
-                      baseName.data(),baseName.data());
+      // run dot to create a .eps image
+      QCString dotArgs(maxCmdLine);
+      dotArgs.sprintf("-Tps \"%s.dot\" -o \"%s.eps\"",
+          baseName.data(),baseName.data());
       if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
       {
         err("Problems running dot. Check your installation!\n");
         QDir::setCurrent(oldDir);
         return baseName;
       }
-
-      out << "<p><center><img src=\"" << baseName << "." 
-          << imgExt << "\" border=\"0\" usemap=\"#"
-          << mapName << "_map\" alt=\"";
-      out << "\">";
-      out << "</center>" << endl;
-      QString tmpstr;
-      QTextOStream tmpout(&tmpstr);
-      convertMapFile(tmpout,baseName+".map");
-      if (!tmpstr.isEmpty())
+      if (Config_getBool("USE_PDFLATEX"))
       {
-        out << "<map name=\"" << mapName << "_map\">" << endl;
-        out << tmpstr;
-        out << "</map>" << endl;
+        QCString epstopdfArgs(maxCmdLine);
+        epstopdfArgs.sprintf("\"%s.eps\" --outfile=\"%s.pdf\"",
+            baseName.data(),baseName.data());
+        if (iSystem("epstopdf",epstopdfArgs,TRUE)!=0)
+        {
+          err("Error: Problems running epstopdf. Check your TeX installation!\n");
+          QDir::setCurrent(oldDir);
+          return baseName;
+        }
       }
-      thisDir.remove(baseName+".map");
     }
   }
-  else if (format==EPS)
+
+  if (format==BITMAP)
   {
-    // run dot to create a .eps image
-    QCString dotArgs(maxCmdLine);
-    dotArgs.sprintf("-Tps \"%s.dot\" -o \"%s.eps\"",
-                   baseName.data(),baseName.data());
-    if (iSystem(Config_getString("DOT_PATH")+"dot",dotArgs)!=0)
+    out << "<p><center><img src=\"" << baseName << "." 
+        << imgExt << "\" border=\"0\" usemap=\"#"
+        << mapName << "_map\" alt=\"";
+    out << "\">";
+    out << "</center>" << endl;
+    QString tmpstr;
+    QTextOStream tmpout(&tmpstr);
+    convertMapFile(tmpout,baseName+".map");
+    if (!tmpstr.isEmpty())
     {
-      err("Problems running dot. Check your installation!\n");
-      QDir::setCurrent(oldDir);
-      return baseName;
+      out << "<map name=\"" << mapName << "_map\">" << endl;
+      out << tmpstr;
+      out << "</map>" << endl;
     }
+    //thisDir.remove(baseName+".map");
+  }
+  else if (format==EPS)
+  {
     int width,height;
     if (!readBoundingBoxEPS(baseName+".eps",&width,&height))
     {
@@ -2083,18 +2135,6 @@ QCString DotCallGraph::writeGraph(QTextStream &out, GraphOutputFormat format,
       QDir::setCurrent(oldDir);
       return baseName;
     }
-    if (Config_getBool("USE_PDFLATEX"))
-    {
-      QCString epstopdfArgs(maxCmdLine);
-      epstopdfArgs.sprintf("\"%s.eps\" --outfile=\"%s.pdf\"",
-                     baseName.data(),baseName.data());
-      if (iSystem("epstopdf",epstopdfArgs,TRUE)!=0)
-      {
-         err("Error: Problems running epstopdf. Check your TeX installation!\n");
-         QDir::setCurrent(oldDir);
-         return baseName;
-      }
-    }
     int maxWidth = 420; /* approx. page width in points */
    
     out << "\\begin{figure}[H]\n"
diff --git a/src/doxygen.cpp b/src/doxygen.cpp
index 1165c51..8360acb 100644
--- a/src/doxygen.cpp
+++ b/src/doxygen.cpp
@@ -4037,7 +4037,7 @@ static void addMemberDocs(Entry *root,
 static ClassDef *findClassDefinition(FileDef *fd,NamespaceDef *nd,
                          const char *scopeName)
 {
-  ClassDef *tcd = getClass(scopeName);
+  ClassDef *tcd = getResolvedClass(nd,fd,scopeName);
   if (tcd==0) // try using declaration
   {
     ClassSDict *cl = 0;
@@ -4438,7 +4438,7 @@ static void findMember(Entry *root,
   }
   //printf("new scope=`%s'\n",scopeName.data());
 
-  QCString tempScopeName=scopeName.copy();
+  QCString tempScopeName=scopeName;
   ClassDef *cd=getClass(scopeName);
   if (cd)
   {
diff --git a/src/ftvhelp.cpp b/src/ftvhelp.cpp
index 939cbba..6704fb2 100644
--- a/src/ftvhelp.cpp
+++ b/src/ftvhelp.cpp
@@ -625,6 +625,9 @@ void FTVHelp::generateTreeView()
   else
   {
     QTextStream t(&f);
+#if QT_VERSION >= 200
+    t.setEncoding(QTextStream::Latin1);
+#endif
     t << "<html xmlns=\"http://www.w3.org/1999/xhtml\" xml:lang=\"en\" lang=\"en\">\n";
     t << "  <head>\n";
     t << "    <meta http-equiv=\"Content-Type\" content=\"text/xhtml;charset=\""
diff --git a/src/htmlgen.cpp b/src/htmlgen.cpp
index 3a260a2..d247102 100644
--- a/src/htmlgen.cpp
+++ b/src/htmlgen.cpp
@@ -1397,6 +1397,9 @@ void HtmlGenerator::writeSearchPage()
     if (f.open(IO_WriteOnly))
     {
       QTextStream t(&f);
+#if QT_VERSION >= 200
+      t.setEncoding(QTextStream::Latin1);
+#endif
       if (g_header.isEmpty()) 
       {
         writeDefaultHeaderFile(t,"Search");
diff --git a/src/latexgen.cpp b/src/latexgen.cpp
index e330e1e..273dd74 100644
--- a/src/latexgen.cpp
+++ b/src/latexgen.cpp
@@ -247,7 +247,8 @@ static void writeDefaultHeaderPart1(QTextStream &t)
     "\\usepackage{multicol}\n"
     "\\usepackage{float}\n"
     "\\usepackage{textcomp}\n"
-    "\\usepackage{alltt}\n";
+    "\\usepackage{alltt}\n"
+    "\\usepackage{ae,aecompl,aeguill}\n";
   if (Config_getBool("PDF_HYPERLINKS")) 
   {
     t << "\\usepackage{times}" << endl;
diff --git a/src/memberdef.cpp b/src/memberdef.cpp
index f3f9156..3ce930d 100644
--- a/src/memberdef.cpp
+++ b/src/memberdef.cpp
@@ -522,7 +522,7 @@ QCString MemberDef::anchor() const
 
 bool MemberDef::isLinkableInProject() const
 {
-  //printf("MemberDef::isLinkableInProject()\n");
+  //printf("MemberDef::isLinkableInProject(name=%s)\n",name().data());
   if (m_templateMaster)
   {
     return m_templateMaster->isLinkableInProject();
diff --git a/src/memberlist.cpp b/src/memberlist.cpp
index e943f17..e6da01e 100644
--- a/src/memberlist.cpp
+++ b/src/memberlist.cpp
@@ -243,7 +243,7 @@ void MemberList::writePlainDeclarations(OutputList &ol,
                 if (md->isDetailedSectionLinkable())
                 {
                   ol.disableAllBut(OutputGenerator::Html);
-                  ol.endEmphasis();
+                  //ol.endEmphasis();
                   ol.docify(" ");
                   if (md->getGroupDef()!=0 && gd==0) // forward link to group
                   {
@@ -256,7 +256,7 @@ void MemberList::writePlainDeclarations(OutputList &ol,
                   }
                   ol.parseText(theTranslator->trMore());
                   ol.endTextLink();
-                  ol.startEmphasis();
+                  //ol.startEmphasis();
                   ol.enableAll();
                 }
                 ol.endMemberDescription();
diff --git a/src/pngenc.cpp b/src/pngenc.cpp
index 5a52e2f..8578819 100644
--- a/src/pngenc.cpp
+++ b/src/pngenc.cpp
@@ -24,7 +24,8 @@
 #  define png_jmpbuf(png_ptr) ((png_ptr)->jmpbuf)
 #endif
 
-#include <png.h>
+#define ALL_STATIC
+#include <../libpng/png.h>
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
diff --git a/src/scanner.l b/src/scanner.l
index d70ad39..98a568a 100644
--- a/src/scanner.l
+++ b/src/scanner.l
@@ -672,6 +672,7 @@ PHPKW	  ("require"|"require_once"|"include"|"include_once"|"echo")[^a-zA-Z0-9_;]
 %x	EnumDocArg1
 %x	FuncPtr
 %x	EndFuncPtr
+%x	FuncPtrInit
 %x	FuncFunc
 %x	FuncFuncEnd
 %x	FuncFuncType
@@ -2643,8 +2644,32 @@ PHPKW	  ("require"|"require_once"|"include"|"include_once"|"echo")[^a-zA-Z0-9_;]
   					  lastCPPContext = YY_START;
   					  BEGIN(SkipCPP);
 					}	
-<FuncQual>"="				{ // typically a initialized function pointer
+<FuncQual>"="				{ // typically an initialized function pointer
                                           current->args += *yytext; 
+					  BEGIN(FuncPtrInit);
+  					}
+<FuncPtrInit>[{;]			{
+  					  unput(*yytext);
+					  BEGIN(FuncQual);
+  					}
+<FuncPtrInit>\"				{
+                                          current->args += *yytext; 
+  					  pCopyQuotedString=&current->args;
+					  lastStringContext=FuncPtrInit;
+					  BEGIN(CopyString);
+					}
+<FuncPtrInit>{CHARLIT}			{
+                                          current->args += yytext; 
+  					}
+<FuncPtrInit>{ID}			{
+                                          current->args += yytext; 
+					}
+<FuncPtrInit>.				{
+                                          current->args += *yytext; 
+  					}
+<FuncPtrInit>\n				{
+                                          current->args += *yytext; 
+					  yyLineNr++;
   					}
 <FuncQual>{ID}				{ // typically a K&R style C function
 					  if (checkForKnRstyleC())
diff --git a/src/util.cpp b/src/util.cpp
index 4147bcd..4a0e1ab 100644
--- a/src/util.cpp
+++ b/src/util.cpp
@@ -17,7 +17,7 @@
 
 #include <stdlib.h>
 #include <ctype.h>
-#ifdef _WIN32
+#if defined(_WIN32) && !defined(__CYGWIN__)
 #include <windows.h>
 #endif
 
@@ -43,7 +43,7 @@
 #include "reflist.h"
 #include "pagedef.h"
 
-#ifndef _WIN32
+#if !defined(_WIN32) || defined(__CYGWIN__)
 #include <unistd.h>
 #include <stdlib.h>
 #include <sys/types.h>
@@ -94,7 +94,7 @@ int iSystem(const char *command,const char *args,bool isBatchFile)
 {
   QTime time;
   time.start();
-#ifndef _WIN32
+#if !defined(_WIN32) || defined(__CYGWIN__)
   isBatchFile=isBatchFile;
   /*! taken from the system() manpage on my Linux box */
   int pid,status=0;
@@ -167,7 +167,7 @@ int iSystem(const char *command,const char *args,bool isBatchFile)
   }
 #endif // _OS_SOLARIS
 
-#else
+#else // Win32 specific
   if (isBatchFile)
   {
     QCString fullCmd = command;
@@ -2697,6 +2697,7 @@ bool getDefs(const QCString &scName,const QCString &memberName,
           }
           if (bmd) md=bmd;
         }
+        if (md && !md->isLinkable()) md=0; // ignore things we cannot link to
         if (md) // found a matching global member
         {
           fd=md->getFileDef();
@@ -2963,18 +2964,19 @@ bool generateRef(OutputDocInterface &od,const char *scName,
 
   if (resolveRef(scName,name,inSeeBlock,&compound,&md))
   {
-    if (md) // link to member
+    if (md && md->isLinkable()) // link to member
     {
       od.writeObjectLink(md->getReference(),
                          md->getOutputFileBase(),
                          md->anchor(),linkText);
       // generate the page reference (for LaTeX)
-      if (md->isLinkableInProject())
+      if (!md->isReference())
       {
         writePageRef(od,md->getOutputFileBase(),md->anchor());
       }
+      return TRUE;
     }
-    else // link to compound
+    else if (compound && compound->isLinkable()) // link to compound
     {
       if (rt==0 && compound->definitionType()==Definition::TypeGroup)
       {
@@ -2991,14 +2993,11 @@ bool generateRef(OutputDocInterface &od,const char *scName,
       {
         writePageRef(od,compound->getOutputFileBase(),0);
       }
+      return TRUE;
     }
-    return TRUE;
-  }
-  else // no link possible
-  {
-    od.docify(linkText);
-    return FALSE;
   }
+  od.docify(linkText);
+  return FALSE;
 }
 
 bool resolveLink(/* in */ const char *scName,
diff --git a/src/xmlgen.cpp b/src/xmlgen.cpp
index ec3bc47..5c0c191 100644
--- a/src/xmlgen.cpp
+++ b/src/xmlgen.cpp
@@ -1012,6 +1012,11 @@ static void generateXMLForClass(ClassDef *cd,QTextStream &ti)
   generateXMLSection(cd,ti,t,&cd->proSlots,"protected-slot");
   generateXMLSection(cd,ti,t,&cd->proStaticMethods,"protected-static-func");
   generateXMLSection(cd,ti,t,&cd->proStaticAttribs,"protected-static-attrib");
+  generateXMLSection(cd,ti,t,&cd->pacTypes,"package-type");
+  generateXMLSection(cd,ti,t,&cd->pacMethods,"package-func");
+  generateXMLSection(cd,ti,t,&cd->pacAttribs,"package-attrib");
+  generateXMLSection(cd,ti,t,&cd->pacStaticMethods,"package-static-func");
+  generateXMLSection(cd,ti,t,&cd->pacStaticAttribs,"package-static-attrib");
   generateXMLSection(cd,ti,t,&cd->priTypes,"private-type");
   generateXMLSection(cd,ti,t,&cd->priMethods,"private-func");
   generateXMLSection(cd,ti,t,&cd->priAttribs,"private-attrib");