Release-1.7.6.1-20120122

30 files changed, 985 insertions, 372 deletions

diff --git a/src/code.l b/src/code.l
index 36ebec6..6c9bcef 100644
--- a/src/code.l
+++ b/src/code.l
@@ -3031,7 +3031,7 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
 <FuncCall,MemberCall2>("("{B}*("*"{B}*)+{ID}*{B}*")"{B}*)/("."|"->") { 
   					  g_code->codify(yytext);
 					  int s=0;while (!isId(yytext[s])) s++;
-                                          int e=yyleng-1;while (!isId(yytext[e])) e--;
+                                          int e=(int)yyleng-1;while (!isId(yytext[e])) e--;
 					  g_name=((QCString)yytext).mid(s,e-s+1); 
 					  BEGIN( MemberCall2 ); 
 					}
diff --git a/src/commentcnv.l b/src/commentcnv.l
index 5408f68..fa392bf 100644
--- a/src/commentcnv.l
+++ b/src/commentcnv.l
@@ -285,7 +285,7 @@ void replaceComment(int offset);
 %%
 
 <Scan>[^"'!\/\n\\#\\-]*           { /* eat anything that is not " / or \n */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				   }
 <Scan>"\"\"\""!                     { /* start of python long comment */
                                      if (g_lang!=SrcLangExt_Python)
@@ -295,7 +295,7 @@ void replaceComment(int offset);
 				     else
 				     {
                                        g_pythonDocString = TRUE;
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				       BEGIN(CComment);
 				     }
                                    }
@@ -306,22 +306,22 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				       BEGIN(CComment);
 				     }
                                    }
 <Scan>"\""                         { /* start of a string */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     g_stringContext = YY_START;
 				     BEGIN(SkipString); 
                                    }
 <Scan>'				   {
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     g_charContext = YY_START;
 				     BEGIN(SkipChar);
   				   }
 <Scan>\n                           { /* new line */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <Scan>("//!"|"///").*/\n[ \t]*"//"[\/!][^\/] { /* start C++ style special comment block */
   				     if (g_mlBrief) 
@@ -352,13 +352,13 @@ void replaceComment(int offset);
 				     BEGIN(SComment);
   				   }
 <Scan>"//"/.*\n	                   { /* one line C++ comment */ 
-  				     copyToOutput(yytext,yyleng); 
+  				     copyToOutput(yytext,(int)yyleng); 
 				     g_readLineCtx=YY_START;
 				     BEGIN(ReadLine);
 				   }
 <Scan>"/*"[*!]?			   { /* start of a C comment */
-  			             g_specialComment=yyleng==3;
-                                     copyToOutput(yytext,yyleng); 
+  			             g_specialComment=(int)yyleng==3;
+                                     copyToOutput(yytext,(int)yyleng); 
 				     BEGIN(CComment); 
                                    }
 <Scan>"#"("#")?		           {
@@ -368,7 +368,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				       BEGIN(CComment);
 				     }
   				   }
@@ -379,7 +379,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				       BEGIN(CComment);
 				     }
   				   }
@@ -390,7 +390,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				       BEGIN(CComment);
 				     }
   				   }
@@ -402,14 +402,14 @@ void replaceComment(int offset);
                                      BEGIN(VerbatimCode);
   				   }
 <CComment,ReadLine>[\\@]("dot"|"code"|"msc")/[^a-z_A-Z0-9] { /* start of a verbatim block */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     g_lastCommentContext = YY_START;
 				     g_javaBlock=0;
 				     g_blockName=&yytext[1];
                                      BEGIN(VerbatimCode);
   				   }
 <CComment,ReadLine>[\\@]("f$"|"f["|"f{"[a-z]*) {
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     g_blockName=&yytext[1];
 				     if (g_blockName.at(1)=='[')
 				     {
@@ -423,16 +423,16 @@ void replaceComment(int offset);
 				     BEGIN(Verbatim);
   			           }
 <CComment,ReadLine>[\\@]("verbatim"|"latexonly"|"htmlonly"|"xmlonly"|"rtfonly"|"manonly")/[^a-z_A-Z0-9] { /* start of a verbatim block */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     g_blockName=&yytext[1];
 				     g_lastCommentContext = YY_START;
                                      BEGIN(Verbatim);
                                    }
 <Scan>.                            { /* any other character */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <Verbatim>[\\@]("endverbatim"|"endlatexonly"|"endhtmlonly"|"endxmlonly"|"endrtfonly"|"endmanonly"|"f$"|"f]"|"f}") { /* end of verbatim block */
-                                     copyToOutput(yytext,yyleng);
+                                     copyToOutput(yytext,(int)yyleng);
 				     if (yytext[1]=='f') // end of formula
 				     {
 				       BEGIN(g_lastCommentContext);
@@ -450,7 +450,7 @@ void replaceComment(int offset);
 				     else
 				     {
 				       g_javaBlock++;
-                                       copyToOutput(yytext,yyleng);
+                                       copyToOutput(yytext,(int)yyleng);
 				     }
                                    }
 <VerbatimCode>"}"		   {
@@ -468,12 +468,12 @@ void replaceComment(int offset);
 				       }
 				       else
 				       {
-                                         copyToOutput(yytext,yyleng);
+                                         copyToOutput(yytext,(int)yyleng);
 				       }
 				     }
   				   }
 <VerbatimCode>[\\@]("enddot"|"endcode"|"endmsc") { /* end of verbatim block */
-                                     copyToOutput(yytext,yyleng);
+                                     copyToOutput(yytext,(int)yyleng);
 				     if (&yytext[4]==g_blockName)
 				     {
 				       BEGIN(g_lastCommentContext);
@@ -482,14 +482,14 @@ void replaceComment(int offset);
 <VerbatimCode>^[ \t]*"//"[\!\/]?   { /* skip leading comments */
   				     if (!g_inSpecialComment)
 				     {
-                                       copyToOutput(yytext,yyleng); 
+                                       copyToOutput(yytext,(int)yyleng); 
 				     }
   				   }
 <Verbatim,VerbatimCode>[^@\/\\\n{}]* { /* any character not a backslash or new line or } */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <Verbatim,VerbatimCode>\n	   { /* new line in verbatim block */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <Verbatim,VerbatimCode>^[ \t]*"///"  {
   				     if (g_blockName=="dot" || g_blockName=="msc" || g_blockName.at(0)=='f')
@@ -503,40 +503,40 @@ void replaceComment(int offset);
 				     }
   				   }
 <Verbatim,VerbatimCode>.	   { /* any other character */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipString>\\.                    { /* escaped character in string */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipString>"\""       	           { /* end of string */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
 				     BEGIN(g_stringContext); 
                                    }
 <SkipString>.                      { /* any other string character */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipString>\n                     { /* new line inside string (illegal for some compilers) */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipChar>\\.		           { /* escaped character */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipChar>'                        { /* end of character literal */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                      BEGIN(g_charContext);
                                    }
 <SkipChar>.                        { /* any other string character */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <SkipChar>\n                       { /* new line character */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 
 <CComment>[^\\!@*\n{\"]*           { /* anything that is not a '*' or command */ 
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <CComment>"*"+[^*/\\@\n{\"]*       { /* stars without slashes */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <CComment>"\"\"\""                 { /* end of Python docstring */
                                      if (g_lang!=SrcLangExt_Python)
@@ -546,12 +546,12 @@ void replaceComment(int offset);
 				     else
 				     {
                                        g_pythonDocString = FALSE;
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
   				   }
 <CComment>\n                       { /* new line in comment */
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
                                    }
 <CComment>"*"+"/"                  { /* end of C comment */
                                      if (g_lang==SrcLangExt_Python)
@@ -560,7 +560,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
                                    }
@@ -571,7 +571,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
   				   }
@@ -582,7 +582,7 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
   				   }
@@ -593,22 +593,22 @@ void replaceComment(int offset);
 				     }
 				     else
 				     {
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
   				   }
 <CComment>"'"			   {
   			             g_charContext = YY_START;
-				     copyToOutput(yytext,yyleng);
+				     copyToOutput(yytext,(int)yyleng);
 				     BEGIN(SkipChar);
   				   }
 <CComment>"\""			   {
   			             g_stringContext = YY_START;
-				     copyToOutput(yytext,yyleng);
+				     copyToOutput(yytext,(int)yyleng);
 				     BEGIN(SkipString);
   				   }
 <CComment>.			   {
-                                     copyToOutput(yytext,yyleng); 
+                                     copyToOutput(yytext,(int)yyleng); 
   				   }
 <SComment>^[ \t]*"///"[\/]*/\n     {
   				     replaceComment(0);
@@ -666,17 +666,17 @@ void replaceComment(int offset);
                                    }
 <SComment>\n			   { /* end of special comment */
                                      copyToOutput(" */",3); 
-				     copyToOutput(yytext,yyleng); 
+				     copyToOutput(yytext,(int)yyleng); 
 				     g_inSpecialComment=FALSE;
 				     g_inRoseComment=FALSE;
 				     BEGIN(Scan); 
                                    }
 <ReadLine>[^\\@\n]*/\n		   {
-  				     copyToOutput(yytext,yyleng);
+  				     copyToOutput(yytext,(int)yyleng);
                                      BEGIN(g_readLineCtx);
   				   }
 <CComment,ReadLine>[\\@][\\@][~a-z_A-Z][a-z_A-Z0-9]*[ \t]* { // escaped command
-				     copyToOutput(yytext,yyleng);
+				     copyToOutput(yytext,(int)yyleng);
   				   }
 <CComment,ReadLine>[\\@]"cond"[ \t]+	   { // conditional section
   				     g_condCtx = YY_START; 
@@ -756,7 +756,7 @@ void replaceComment(int offset);
 				     else // abort the alias, restart scanning
 				     {
 				       copyToOutput(g_aliasString,g_aliasString.length());
-				       copyToOutput(yytext,yyleng);
+				       copyToOutput(yytext,(int)yyleng);
 				       BEGIN(Scan);
 				     }
   				   }
@@ -794,7 +794,7 @@ void replaceComment(int offset);
 				     g_lastEscaped=FALSE;
   				   }
 <ReadLine>.			   {
-  				     copyToOutput(yytext,yyleng);
+  				     copyToOutput(yytext,(int)yyleng);
   				   }
 
 %%
@@ -803,7 +803,7 @@ void replaceComment(int offset)
 {
   if (g_mlBrief)
   {
-    copyToOutput(yytext,yyleng);
+    copyToOutput(yytext,(int)yyleng);
   }
   else
   {
@@ -811,12 +811,12 @@ void replaceComment(int offset)
     int i=computeIndent(&yytext[offset]);
     if (i==g_blockHeadCol)
     {
-      replaceCommentMarker(yytext,yyleng);
+      replaceCommentMarker(yytext,(int)yyleng);
     }
     else
     {
       copyToOutput(" */",3);
-      int i;for (i=yyleng-1;i>=0;i--) unput(yytext[i]);
+      int i;for (i=(int)yyleng-1;i>=0;i--) unput(yytext[i]);
       g_inSpecialComment=FALSE;
       BEGIN(Scan);                                            
     }                                                         
diff --git a/src/commentscan.l b/src/commentscan.l
index 4f4408f..85b378a 100644
--- a/src/commentscan.l
+++ b/src/commentscan.l
@@ -387,8 +387,9 @@ static Entry*		current      = 0 ;   // working entry
 //static Entry*		previous     = 0 ;   // TODO: remove need for this
 static bool             needNewEntry;
 
-static QCString         sectionLabel;
-static QCString		sectionTitle;
+static QCString         g_sectionLabel;
+static QCString		g_sectionTitle;
+static int              g_sectionLevel;
 static QCString         xrefItemKey;
 static QCString         newXRefItemKey;
 static QCString         xrefItemTitle;
@@ -401,7 +402,6 @@ static int              braceCount;
 static bool             insidePre;
 static bool             parseMore;
 static int              g_condCount;
-static int              g_sectionLevel;
 
 static int              g_commentCount;
 static bool             g_spaceBeforeCmd;
@@ -421,38 +421,40 @@ static QCString         g_compoundName;
 
 static void initParser()
 {
-  sectionLabel.resize(0);
-  sectionTitle.resize(0);
+  g_sectionLabel.resize(0);
+  g_sectionTitle.resize(0);
   g_memberGroupHeader.resize(0);
 }
 
 //-----------------------------------------------------------------------------
 
-static QCString getDocSectionName(int s)
+static bool getDocSectionName(int s)
 {
   switch(s)
   {
-    case Entry::CLASSDOC_SEC:       return "\\class";
-    case Entry::STRUCTDOC_SEC:      return "\\struct";
-    case Entry::UNIONDOC_SEC:       return "\\union";
-    case Entry::EXCEPTIONDOC_SEC:   return "\\exception";
-    case Entry::NAMESPACEDOC_SEC:   return "\\namespace";
-    case Entry::PROTOCOLDOC_SEC:    return "\\protocol";
-    case Entry::CATEGORYDOC_SEC:    return "\\category";
-    case Entry::ENUMDOC_SEC:        return "\\enum";
-    case Entry::PAGEDOC_SEC:        return "\\page";
-    case Entry::VARIABLEDOC_SEC:    return "\\var";
-    case Entry::MEMBERDOC_SEC:      return "\\fn";
-    case Entry::OVERLOADDOC_SEC:    return "\\overload";
-    case Entry::FILEDOC_SEC:        return "\\file";
-    case Entry::DEFINEDOC_SEC:      return "\\def";
-    case Entry::GROUPDOC_SEC:       return "\\defgroup";
-    case Entry::MAINPAGEDOC_SEC:    return "\\mainpage";
-    case Entry::PACKAGEDOC_SEC:     return "\\package";
-    case Entry::DIRDOC_SEC:         return "\\dir";
-    case Entry::EXAMPLE_SEC:        return "\\example";
-    case Entry::MEMBERGRP_SEC:      return "\\name";
-    default: return "";
+    case Entry::CLASSDOC_SEC:
+    case Entry::STRUCTDOC_SEC:
+    case Entry::UNIONDOC_SEC:
+    case Entry::EXCEPTIONDOC_SEC:
+    case Entry::NAMESPACEDOC_SEC:
+    case Entry::PROTOCOLDOC_SEC:
+    case Entry::CATEGORYDOC_SEC:
+    case Entry::ENUMDOC_SEC:
+    case Entry::PAGEDOC_SEC:
+    case Entry::VARIABLEDOC_SEC:
+    case Entry::MEMBERDOC_SEC:
+    case Entry::OVERLOADDOC_SEC:
+    case Entry::FILEDOC_SEC:
+    case Entry::DEFINEDOC_SEC:
+    case Entry::GROUPDOC_SEC:
+    case Entry::MAINPAGEDOC_SEC:
+    case Entry::PACKAGEDOC_SEC:
+    case Entry::DIRDOC_SEC:
+    case Entry::EXAMPLE_SEC:
+    case Entry::MEMBERGRP_SEC:
+      return TRUE;
+    default: 
+      return FALSE;
   }
 }
 
@@ -461,7 +463,7 @@ static QCString getDocSectionName(int s)
 static bool makeStructuralIndicator(Entry::Sections s)
 {
   //printf("current->section=%x\n",current->section);
-  if (!getDocSectionName(current->section).isEmpty())
+  if (getDocSectionName(current->section))
   {
     return TRUE;
   }
@@ -558,8 +560,9 @@ static void addXRefItem(const char *listName,const char *itemTitle,
       docEntry->doc += cmdString;
     }
     SectionInfo *si=new SectionInfo(listName,anchorLabel,
-	                            sectionTitle,SectionInfo::Anchor);
-    Doxygen::sectionDict.insert(anchorLabel,si);
+	                            g_sectionTitle,SectionInfo::Anchor,
+                                    g_sectionLevel);
+    Doxygen::sectionDict.append(anchorLabel,si);
     docEntry->anchors->append(si);
   }
   outputXRef.resize(0);
@@ -598,14 +601,26 @@ static QCString addFormula()
 static void checkFormula();
 //-----------------------------------------------------------------------------
 
+static SectionInfo::SectionType sectionLevelToType(int level)
+{
+  if (level>=0 && level<5) return (SectionInfo::SectionType)level;
+  return SectionInfo::Anchor;
+}
+
 static void addSection()
 {
-  sectionTitle+=yytext;
-  sectionTitle=sectionTitle.stripWhiteSpace();
-  //printf("Adding new section file=%s label=%s title=%s\n",yyFileName,sectionLabel.data(),sectionTitle.data()); 
-  SectionInfo *si = new SectionInfo(yyFileName,sectionLabel,sectionTitle,SectionInfo::Anchor);
+  // create a new section element
+  g_sectionTitle+=yytext;
+  g_sectionTitle=g_sectionTitle.stripWhiteSpace();
+  SectionInfo *si = new SectionInfo(yyFileName,g_sectionLabel,
+                          g_sectionTitle,sectionLevelToType(g_sectionLevel),g_sectionLevel);
+
+  // add section to this entry
   current->anchors->append(si);
-  Doxygen::sectionDict.insert(yytext,si);
+
+  // add section to the global dictionary
+  Doxygen::sectionDict.append(g_sectionLabel,si);
+
 }
 
 //-----------------------------------------------------------------------------
@@ -1061,7 +1076,22 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
   				          addOutput(yytext); 
 					}
 <Comment>^{B}*[1-9][0-9]*"."{B}+        |
-<Comment>^{B}*[*+-]{B}+			{ // start of autolist
+<Comment>^{B}*[*+]{B}+			{ // start of autolist
+                                          if (!Doxygen::markdownSupport)
+                                          {
+                                            REJECT;
+                                          }
+                                          else
+                                          {
+                                            if (inContext!=OutputXRef) 
+                                            {
+                                              briefEndsAtDot=FALSE;
+                                              setOutput(OutputDoc);
+                                            }
+                                            addOutput(yytext); 
+                                          }
+  					}
+<Comment>^{B}*"-"{B}+			{ // start of autolist
 					  if (inContext!=OutputXRef) 
 					  {
 					    briefEndsAtDot=FALSE;
@@ -1492,9 +1522,9 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
   /* ----- handle arguments of the section/subsection/.. commands ------- */
 
 <SectionLabel>{LABELID}			{ // first argyment
-  					  sectionLabel=yytext;
+  					  g_sectionLabel=yytext;
                                           addOutput(yytext);
-					  sectionTitle.resize(0);
+					  g_sectionTitle.resize(0);
 					  BEGIN(SectionTitle);
   					}
 <SectionLabel>{DOCNL}			{ // missing argument
@@ -1511,8 +1541,7 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
 					      );
 					  BEGIN(Comment);
   					}
-
-<SectionTitle>[^\n@\\*]*/"\n"            { // end of section title
+<SectionTitle>[^\n@\\*]*/"\n"           { // end of section title
   					  addSection();
                                           addOutput(yytext);
 					  BEGIN( Comment );
@@ -1527,19 +1556,19 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
 					  addOutput('\n');
   					}
 <SectionTitle>[^\n@\\]*			{ // any character without special meaning
-  					  sectionTitle+=yytext;
+  					  g_sectionTitle+=yytext;
 					  addOutput(yytext);
   					}
 <SectionTitle>("\\\\"|"@@"){ID}		{ // unescape escaped command
-  					  sectionTitle+=&yytext[1];
+  					  g_sectionTitle+=&yytext[1];
 					  addOutput(yytext);
   					}
 <SectionTitle>{CMD}[$@\\&~<>#%]		{ // unescape escaped character
-  					  sectionTitle+=yytext[1];
+  					  g_sectionTitle+=yytext[1];
   					  addOutput(yytext);
   					}
 <SectionTitle>.				{ // anything else
-  					  sectionTitle+=yytext;
+  					  g_sectionTitle+=yytext;
 					  addOutput(*yytext);
   					}
 
@@ -1576,8 +1605,8 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
   /* ----- handle arguments of the anchor command ------- */
 
 <AnchorLabel>{LABELID}			{ // found argument
-                                          SectionInfo  *si = new SectionInfo(yyFileName,yytext,0,SectionInfo::Anchor);
-                                          Doxygen::sectionDict.insert(yytext,si);
+                                          SectionInfo  *si = new SectionInfo(yyFileName,yytext,0,SectionInfo::Anchor,0);
+                                          Doxygen::sectionDict.append(yytext,si);
   					  current->anchors->append(si);
 					  addOutput(yytext);
 					  BEGIN( Comment );
@@ -2646,9 +2675,9 @@ bool parseCommentBlock(/* in */     ParserInterface *parser,
 
   if (Doxygen::markdownSupport)
   {
-    current->brief      = processMarkdown(current->brief);
-    current->doc        = processMarkdown(current->doc);
-    current->inbodyDocs = processMarkdown(current->inbodyDocs);
+    current->brief      = processMarkdown(fileName,current,current->brief);
+    current->doc        = processMarkdown(fileName,current,current->doc);
+    current->inbodyDocs = processMarkdown(fileName,current,current->inbodyDocs);
   }
 
   Debug::print(Debug::CommentScan,0,
diff --git a/src/definition.cpp b/src/definition.cpp
index e04c767..4bca129 100644
--- a/src/definition.cpp
+++ b/src/definition.cpp
@@ -320,10 +320,11 @@ void Definition::addSectionsToDefinition(QList<SectionInfo> *anchorList)
     //printf("Add section `%s' to definition `%s'\n",
     //    si->label.data(),name().data());
     SectionInfo *gsi=Doxygen::sectionDict.find(si->label);
+    //printf("===== label=%s gsi=%p\n",si->label.data(),gsi);
     if (gsi==0)
     {
       gsi = new SectionInfo(*si);
-      Doxygen::sectionDict.insert(si->label,gsi);
+      Doxygen::sectionDict.append(si->label,gsi);
     }
     if (m_impl->sectionDict==0) 
     {
@@ -331,20 +332,82 @@ void Definition::addSectionsToDefinition(QList<SectionInfo> *anchorList)
     }
     if (m_impl->sectionDict->find(gsi->label)==0)
     {
-      m_impl->sectionDict->insert(gsi->label,gsi);
+      m_impl->sectionDict->append(gsi->label,gsi);
       gsi->definition = this;
     }
     si=anchorList->next();
   }
 }
 
+bool Definition::hasSections() const
+{
+  makeResident();
+  //printf("Definition::hasSections(%s) #sections=%d\n",name().data(),
+  //    m_impl->sectionDict ? m_impl->sectionDict->count() : 0);
+  if (m_impl->sectionDict==0) return FALSE;
+  SDict<SectionInfo>::Iterator li(*m_impl->sectionDict);
+  SectionInfo *si;
+  for (li.toFirst();(si=li.current());++li)
+  {
+    if (si->type==SectionInfo::Section || 
+        si->type==SectionInfo::Subsection || 
+        si->type==SectionInfo::Subsubsection ||
+        si->type==SectionInfo::Paragraph)
+    {
+      return TRUE;
+    }
+  }
+  return FALSE;
+}
+
+void Definition::addSectionsToIndex()
+{
+  makeResident();
+  if (m_impl->sectionDict==0) return;
+  //printf("Definition::addSectionsToIndex()\n");
+  SDict<SectionInfo>::Iterator li(*m_impl->sectionDict);
+  SectionInfo *si;
+  int level=0;
+  for (li.toFirst();(si=li.current());++li)
+  {
+    if (si->type==SectionInfo::Section       || 
+        si->type==SectionInfo::Subsection    || 
+        si->type==SectionInfo::Subsubsection ||
+        si->type==SectionInfo::Paragraph)
+    {
+      //printf("  level=%d title=%s\n",level,si->title.data());
+      int nextLevel = (int)si->type;
+      if (nextLevel>level)
+      {
+        Doxygen::indexList.incContentsDepth();
+      }
+      else if (nextLevel<level)
+      {
+        Doxygen::indexList.decContentsDepth();
+      }
+      Doxygen::indexList.addContentsItem(TRUE,si->title,
+                                         getReference(),
+                                         getOutputFileBase(),
+                                         si->label,
+                                         FALSE,
+                                         TRUE);
+      level = nextLevel;
+    }
+  }
+  while (level>0)
+  {
+    Doxygen::indexList.decContentsDepth();
+    level--;
+  }
+}
+
 void Definition::writeDocAnchorsToTagFile()
 {
   makeResident();
   if (!Config_getString("GENERATE_TAGFILE").isEmpty() && m_impl->sectionDict)
   {
     //printf("%s: writeDocAnchorsToTagFile(%d)\n",name().data(),m_sectionDict->count());
-    QDictIterator<SectionInfo> sdi(*m_impl->sectionDict);
+    SDict<SectionInfo>::Iterator sdi(*m_impl->sectionDict);
     SectionInfo *si;
     for (;(si=sdi.current());++sdi)
     {
diff --git a/src/definition.h b/src/definition.h
index 1e51a1c..c07eb3e 100644
--- a/src/definition.h
+++ b/src/definition.h
@@ -260,6 +260,7 @@ class Definition : public DefinitionIntf, public LockableObj
     LockingPtr<MemberSDict> getReferencesMembers() const;
     LockingPtr<MemberSDict> getReferencedByMembers() const;
 
+    bool hasSections() const;
 
     //-----------------------------------------------------------------------------------
     // ----  setters -----
@@ -328,6 +329,8 @@ class Definition : public DefinitionIntf, public LockableObj
     void writeDocAnchorsToTagFile();
     void setLocalName(const QCString name);
 
+    void addSectionsToIndex();
+
   protected:
 
     virtual void flushToDisk() const;
diff --git a/src/docparser.cpp b/src/docparser.cpp
index 3ec6631..526e349 100644
--- a/src/docparser.cpp
+++ b/src/docparser.cpp
@@ -1720,7 +1720,7 @@ DocAnchor::DocAnchor(DocNode *parent,const QCString &id,bool newAnchor)
       if (g_sectionDict && g_sectionDict->find(id)==0)
       {
         //printf("Inserting in dictionary!\n");
-        g_sectionDict->insert(id,sec);
+        g_sectionDict->append(id,sec);
       }
     }
     else
@@ -1736,9 +1736,10 @@ DocAnchor::DocAnchor(DocNode *parent,const QCString &id,bool newAnchor)
 
 DocVerbatim::DocVerbatim(DocNode *parent,const QCString &context,
     const QCString &text, Type t,bool isExample,
-    const QCString &exampleFile) 
+    const QCString &exampleFile,const QCString &lang) 
   : m_context(context), m_text(text), m_type(t),
-    m_isExample(isExample), m_exampleFile(exampleFile), m_relPath(g_relPath) 
+    m_isExample(isExample), m_exampleFile(exampleFile), 
+    m_relPath(g_relPath), m_lang(lang)
 { 
   m_parent = parent; 
 }
@@ -2134,7 +2135,7 @@ void DocSecRefItem::parse()
       m_anchor = sec->label;
       if (g_sectionDict && g_sectionDict->find(m_target)==0)
       {
-        g_sectionDict->insert(m_target,sec);
+        g_sectionDict->append(m_target,sec);
       }
     }
     else
@@ -2278,7 +2279,7 @@ DocRef::DocRef(DocNode *parent,const QCString &target,const QCString &context) :
   m_parent = parent; 
   Definition  *compound = 0;
   QCString     anchor;
-  //printf("DocRef::DocRef(target=%s,context=%s\n",target.data(),context.data());
+  //printf("DocRef::DocRef(target=%s,context=%s)\n",target.data(),context.data());
   ASSERT(!target.isEmpty());
   m_relPath = g_relPath;
   SectionInfo *sec = Doxygen::sectionDict[target];
@@ -2299,7 +2300,8 @@ DocRef::DocRef(DocNode *parent,const QCString &target,const QCString &context) :
   else if (resolveLink(context,target,TRUE,&compound,anchor))
   {
     bool isFile = compound ? 
-                 (compound->definitionType()==Definition::TypeFile ? TRUE : FALSE) : 
+                 (compound->definitionType()==Definition::TypeFile ||
+                  compound->definitionType()==Definition::TypePage ? TRUE : FALSE) : 
                  FALSE;
     m_text = linkToText(compound?compound->getLanguage():SrcLangExt_Unknown,target,isFile);
     m_anchor = anchor;
@@ -2323,6 +2325,8 @@ DocRef::DocRef(DocNode *parent,const QCString &target,const QCString &context) :
 
       m_file = compound->getOutputFileBase();
       m_ref  = compound->getReference();
+      //printf("isFile=%d compound=%s (%d)\n",isFile,compound->name().data(),
+      //    compound->definitionType());
       return;
     }
     else if (compound->definitionType()==Definition::TypeFile && 
@@ -2334,7 +2338,7 @@ DocRef::DocRef(DocNode *parent,const QCString &target,const QCString &context) :
       return;
     }
   }
-  m_text = linkToText(SrcLangExt_Unknown,target,FALSE);
+  m_text = target;
   warn_doc_error(g_fileName,doctokenizerYYlineno,"warning: unable to resolve reference to `%s' for \\ref command",
            qPrint(target)); 
 }
@@ -4902,6 +4906,11 @@ bool DocPara::injectToken(int tok,const QCString &tokText)
 int DocPara::handleStartCode()
 {
   int retval = doctokenizerYYlex();
+  QCString lang = g_token->name;
+  if (!lang.isEmpty() && lang.at(0)!='.')
+  {
+    lang="."+lang;
+  }
   // search for the first non-whitespace line, index is stored in li
   int i=0,li=0,l=g_token->verb.length();
   while (i<l && (g_token->verb.at(i)==' ' || g_token->verb.at(i)=='\n'))
@@ -4909,7 +4918,7 @@ int DocPara::handleStartCode()
     if (g_token->verb.at(i)=='\n') li=i+1;
     i++;
   }
-  m_children.append(new DocVerbatim(this,g_context,g_token->verb.mid(li),DocVerbatim::Code,g_isExample,g_exampleName));
+  m_children.append(new DocVerbatim(this,g_context,g_token->verb.mid(li),DocVerbatim::Code,g_isExample,g_exampleName,lang));
   if (retval==0) warn_doc_error(g_fileName,doctokenizerYYlineno,"warning: code section ended without end marker");
   doctokenizerYYsetStatePara();
   return retval;
@@ -6264,7 +6273,7 @@ int DocSection::parse()
       if (m_title.isEmpty()) m_title = sec->label;
       if (g_sectionDict && g_sectionDict->find(m_id)==0)
       {
-        g_sectionDict->insert(m_id,sec);
+        g_sectionDict->append(m_id,sec);
       }
     }
   }
diff --git a/src/docparser.h b/src/docparser.h
index 4e8587c..1e7f7d8 100644
--- a/src/docparser.h
+++ b/src/docparser.h
@@ -375,7 +375,7 @@ class DocVerbatim : public DocNode
     enum Type { Code, HtmlOnly, ManOnly, LatexOnly, XmlOnly, Verbatim, Dot, Msc };
     DocVerbatim(DocNode *parent,const QCString &context,
                 const QCString &text, Type t,bool isExample,
-                const QCString &exampleFile);
+                const QCString &exampleFile,const QCString &lang=QCString());
     Kind kind() const            { return Kind_Verbatim; }
     Type type() const            { return m_type; }
     QCString text() const        { return m_text; }
@@ -384,14 +384,16 @@ class DocVerbatim : public DocNode
     bool isExample() const       { return m_isExample; }
     QCString exampleFile() const { return m_exampleFile; }
     QCString relPath() const     { return m_relPath; }
+    QCString language() const    { return m_lang; }
 
   private:
     QCString  m_context;
     QCString  m_text;
-    Type     m_type;
-    bool     m_isExample;
+    Type      m_type;
+    bool      m_isExample;
     QCString  m_exampleFile;
     QCString  m_relPath;
+    QCString  m_lang;
 };
 
 
@@ -1190,6 +1192,9 @@ class DocHtmlRow : public CompAccept<DocHtmlRow>, public DocNode
     const HtmlAttribList &attribs() const { return m_attribs; }
     int parse();
     int parseXml(bool header);
+    bool isHeading() const     { return m_children.count()>0 && 
+                                 ((DocHtmlCell*)m_children.getFirst())->isHeading(); 
+                               }
 
   private:
     HtmlAttribList m_attribs;
diff --git a/src/docsets.cpp b/src/docsets.cpp
index fa86dc8..7a6ff9d 100644
--- a/src/docsets.cpp
+++ b/src/docsets.cpp
@@ -290,7 +290,8 @@ void DocSets::addIndexItem(Definition *context,MemberDef *md,const char *)
     case SrcLangExt_VHDL:    lang="vhdl"; break;       // VHDL
     case SrcLangExt_XML:     lang="xml"; break;        // DBUS XML
     case SrcLangExt_Tcl:     lang="tcl"; break;        // Tcl
-    case SrcLangExt_Unknown: lang="unknown"; break;   // should not happen!
+    case SrcLangExt_Markdown:lang="markdown"; break;   // Markdown
+    case SrcLangExt_Unknown: lang="unknown"; break;    // should not happen!
   }
 
   if (md)
diff --git a/src/doctokenizer.l b/src/doctokenizer.l
index 765e6c8..c9e5756 100644
--- a/src/doctokenizer.l
+++ b/src/doctokenizer.l
@@ -389,6 +389,7 @@ REFWORD   {LABELID}|{REFWORD2}|{REFWORD3}
 %x St_TitleA
 %x St_TitleV
 %x St_Code
+%x St_CodeOpt
 %x St_XmlCode
 %x St_HtmlOnly
 %x St_ManOnly
@@ -696,6 +697,16 @@ REFWORD   {LABELID}|{REFWORD2}|{REFWORD3}
   		           return TK_NEWPARA;
 			 }
                        }
+<St_CodeOpt>"{"{LABELID}"}" {
+                         g_token->name = yytext;
+                         g_token->name = g_token->name.mid(1,g_token->name.length()-2);
+                         BEGIN(St_Code);
+                       }
+<St_CodeOpt>\n         |
+<St_CodeOpt>.          {
+                         unput(*yytext);
+                         BEGIN(St_Code);
+                       }
 <St_Code>{WS}*{CMD}"endcode" {
                          return RetVal_OK;
                        }
@@ -1154,12 +1165,14 @@ void doctokenizerYYsetStateTitleAttrValue()
 void doctokenizerYYsetStateCode()
 {
   g_token->verb="";
-  BEGIN(St_Code);
+  g_token->name="";
+  BEGIN(St_CodeOpt);
 }
 
 void doctokenizerYYsetStateXmlCode()
 {
   g_token->verb="";
+  g_token->name="";
   BEGIN(St_XmlCode);
 }
 
diff --git a/src/doxygen.cpp b/src/doxygen.cpp
index aa61647..34fe2d1 100644
--- a/src/doxygen.cpp
+++ b/src/doxygen.cpp
@@ -163,8 +163,6 @@ static bool             g_successfulRun = FALSE;
 static bool             g_dumpSymbolMap = FALSE;
 static bool             g_dumpConfigAsXML = FALSE;
 
-
-
 void clearAll()
 {
   g_inputFiles.clear();      
@@ -8233,8 +8231,9 @@ static void findMainPage(EntryNav *rootNav)
           indexName,
           Doxygen::mainPage->name(),
           Doxygen::mainPage->title(),
-          SectionInfo::Page);
-      Doxygen::sectionDict.insert(indexName,si);
+          SectionInfo::Page,
+          0); // level 0
+      Doxygen::sectionDict.append(indexName,si);
       Doxygen::mainPage->addSectionsToDefinition(root->anchors);
     }
     else
@@ -8310,7 +8309,7 @@ static void checkPageRelations()
 
 static void resolveUserReferences()
 {
-  QDictIterator<SectionInfo> sdi(Doxygen::sectionDict);
+  SDict<SectionInfo>::Iterator sdi(Doxygen::sectionDict);
   SectionInfo *si;
   for (;(si=sdi.current());++sdi)
   {
@@ -9380,7 +9379,7 @@ void initDoxygen()
   Doxygen::memGrpInfoDict.setAutoDelete(TRUE);
   Doxygen::tagDestinationDict.setAutoDelete(TRUE);
   Doxygen::dirRelations.setAutoDelete(TRUE);
-  Doxygen::citeDict = new CiteDict(256);
+  Doxygen::citeDict = new CiteDict(257);
 }
 
 void cleanUpDoxygen()
diff --git a/src/doxygen.css b/src/doxygen.css
index 613a3d3..b146398 100644
--- a/src/doxygen.css
+++ b/src/doxygen.css
@@ -638,7 +638,6 @@ table.doxtable th {
 	font-size: 110%;
 	padding-bottom: 4px;
 	padding-top: 5px;
-	text-align:left;
 }
 
 table.fieldtable {
diff --git a/src/doxygen_css.h b/src/doxygen_css.h
index 1e4f161..15c68da 100644
--- a/src/doxygen_css.h
+++ b/src/doxygen_css.h
@@ -638,7 +638,6 @@
 "	font-size: 110%;\n"
 "	padding-bottom: 4px;\n"
 "	padding-top: 5px;\n"
-"	text-align:left;\n"
 "}\n"
 "\n"
 "table.fieldtable {\n"
diff --git a/src/fortrancode.l b/src/fortrancode.l
index a9bfd8b..f111e58 100644
--- a/src/fortrancode.l
+++ b/src/fortrancode.l
@@ -661,7 +661,7 @@ ATTR_SPEC (ALLOCATABLE|DIMENSION{ARGS}|EXTERNAL|{INTENT_SPEC}|INTRINSIC|OPTIONAL
 ACCESS_SPEC (PRIVATE|PUBLIC)
 /* Assume that attribute statements are almost the same as attributes. */
 ATTR_STMT {ATTR_SPEC}|DIMENSION
-COMMANDS  (BLOCK{BS}DATA|DO|SELECT|CASE|WHERE|IF|THEN|ELSE|MODULE{BS_}PROCEDURE|CONTAINS|IMPLICIT{BS}NONE|CONTAINS|WRITE|READ|ALLOCATE|ALLOCATED|ASSOCIATED|DEALLOCATE|SIZE|END{BS}IF|END{BS}DO|WHILE|INQUIRE|OPEN|CLOSE|DATA)
+COMMANDS  (DO|SELECT|CASE|WHERE|IF|THEN|ELSE|MODULE{BS_}PROCEDURE|CONTAINS|IMPLICIT{BS}NONE|CONTAINS|WRITE|READ|ALLOCATE|ALLOCATED|ASSOCIATED|DEALLOCATE|SIZE|END{BS}IF|END{BS}DO|WHILE|INQUIRE|OPEN|CLOSE|DATA)
 IGNORE (CALL)
 
 /* |  */
@@ -741,7 +741,7 @@ IGNORE (CALL)
                                         }
        
  /*-------- fortran module  -----------------------------------------*/
-<Start>("program"|"module"|"type"|"interface")/{BS_}|({COMMA}{ACCESS_SPEC})|\n {  //
+<Start>("block"{BS}"data"|"program"|"module"|"type"|"interface")/{BS_}|({COMMA}{ACCESS_SPEC})|\n {  //
 					  startScope();
   					  startFontClass("keyword"); 
   					  codifyLines(yytext);
diff --git a/src/fortranscanner.l b/src/fortranscanner.l
index 16d17f8..a512647 100644
--- a/src/fortranscanner.l
+++ b/src/fortranscanner.l
@@ -230,6 +230,7 @@ IDSYM	  [a-z_A-Z0-9]
 NOTIDSYM  [^a-z_A-Z0-9]
 SEPARATE  [:, \t]
 ID        [a-z_A-Z%]+{IDSYM}*
+ID_       [a-z_A-Z%]*{IDSYM}*
 PP_ID     {ID}
 LABELID   [a-z_A-Z]+[a-z_A-Z0-9\-]*
 SUBPROG   (subroutine|function)
@@ -299,6 +300,7 @@ PREFIX    (RECURSIVE{BS_}|PURE{BS_}|ELEMENTAL{BS_}){0,2}(RECURSIVE|PURE|ELEMENTA
 %x	DocBackLine
 %x	EndDoc
 
+%x      BlockData
 %%
 
  /*-----------------------------------------------------------------------------------*/
@@ -505,6 +507,11 @@ PREFIX    (RECURSIVE{BS_}|PURE{BS_}|ELEMENTAL{BS_}){0,2}(RECURSIVE|PURE|ELEMENTA
 <TypedefBody>^{BS}{CONTAINS}/({BS}|\n|!)  { BEGIN(TypedefBodyContains); }
 
  /*------ module handling ------------------------------------------------------------*/ 
+<Start>block{BS}data{BS}{ID_}        {  //
+                                         v_type = V_IGNORE;
+					    yy_push_state(BlockData);
+                                            defaultProtection = Public;
+                                       }
 <Start>module|program{BS_}             {  //
                                          v_type = V_IGNORE;
 					    if(yytext[0]=='m' || yytext[0]=='M')
@@ -513,6 +520,12 @@ PREFIX    (RECURSIVE{BS_}|PURE{BS_}|ELEMENTAL{BS_}){0,2}(RECURSIVE|PURE|ELEMENTA
 					      yy_push_state(Program);
                                             defaultProtection = Public;
                                        }
+<BlockData>^{BS}"end"({BS}(block{BS}data)({BS_}{ID})?)?{BS}/(\n|!) { // end block data
+					    //if (!endScope(current_root))
+					    //  yyterminate();
+                                            defaultProtection = Public;
+					    yy_pop_state();
+                                       }
 <Start,ModuleBody,ModuleBodyContains>^{BS}"end"({BS}(module|program)({BS_}{ID})?)?{BS}/(\n|!) { // end module	
 					    resolveModuleProcedures(moduleProcedures, current_root);
 					    if (!endScope(current_root))
@@ -660,6 +673,10 @@ private                                 {
                                            subrCurrent.remove(0u);
 					   yy_pop_state() ;
 				        }
+<BlockData>{
+{ID}                                    {
+                                        }
+}
 <Start,ModuleBody,TypedefBody,SubprogBody>{
 ^{BS}{TYPE_SPEC}/{SEPARATE}             {
                                           /* variable declaration starts */
diff --git a/src/ftvhelp.cpp b/src/ftvhelp.cpp
index 5d1061c..a8f9de3 100644
--- a/src/ftvhelp.cpp
+++ b/src/ftvhelp.cpp
@@ -31,6 +31,7 @@
 #include "language.h"
 #include "htmlgen.h"
 #include "layout.h"
+#include "pagedef.h"
 
 #define MAX_INDENT 1024
 
@@ -849,10 +850,17 @@ void FTVHelp::generateTreeViewScripts()
       QCString &projName = Config_getString("PROJECT_NAME");
       if (projName.isEmpty())
       {
-        LayoutNavEntry *lne = LayoutDocManager::instance().rootNavEntry()->find(LayoutNavEntry::MainPage);
-        t << "\"" << convertToJSString(lne->title()) << "\", ";
+        if (Doxygen::mainPage && !Doxygen::mainPage->title().isEmpty()) // Use title of main page as root
+        {
+          t << "\"" << convertToJSString(Doxygen::mainPage->title()) << "\", ";
+        }
+        else // Use default section title as root
+        {
+          LayoutNavEntry *lne = LayoutDocManager::instance().rootNavEntry()->find(LayoutNavEntry::MainPage);
+          t << "\"" << convertToJSString(lne->title()) << "\", ";
+        }
       }
-      else
+      else // use PROJECT_NAME as root tree element
       {
         t << "\"" << convertToJSString(projName) << "\", ";
       }
diff --git a/src/htmldocvisitor.cpp b/src/htmldocvisitor.cpp
index 5ecb124..70fa3f8 100644
--- a/src/htmldocvisitor.cpp
+++ b/src/htmldocvisitor.cpp
@@ -330,12 +330,17 @@ void HtmlDocVisitor::visit(DocStyleChange *s)
 void HtmlDocVisitor::visit(DocVerbatim *s)
 {
   if (m_hide) return;
+  QCString lang = m_langExt;
+  if (!s->language().isEmpty()) // explicit language setting
+  {
+    lang = s->language();
+  }
   switch(s->type())
   {
     case DocVerbatim::Code: 
       forceEndParagraph(s);
       m_t << PREFRAG_START;
-      Doxygen::parserManager->getParser(m_langExt)
+      Doxygen::parserManager->getParser(lang)
                             ->parseCode(m_ci,s->context(),s->text(),
                                         s->isExample(),s->exampleFile());
       m_t << PREFRAG_END;
diff --git a/src/index.cpp b/src/index.cpp
index 09e152c..68725aa 100644
--- a/src/index.cpp
+++ b/src/index.cpp
@@ -2765,7 +2765,7 @@ static void writePageIndex(OutputList &ol)
   ol.startContents();
   ol.startTextBlock();
   bool addToIndex = lne==0 || lne->visible();
-  if (addToIndex)
+  if (0 /*addToIndex*/) // skip Related Pages section in navigation index
   {
     Doxygen::indexList.addContentsItem(TRUE,title,0,"pages",0,TRUE,TRUE); 
     Doxygen::indexList.incContentsDepth();
@@ -2777,7 +2777,7 @@ static void writePageIndex(OutputList &ol)
   PageDef *pd=0;
   for (pdi.toFirst();(pd=pdi.current());++pdi)
   {
-    if ( pd->visibleInIndex())
+    if (pd->visibleInIndex())
     {
       QCString pageTitle;
 
@@ -2787,6 +2787,7 @@ static void writePageIndex(OutputList &ol)
         pageTitle=pd->title();
 
       bool hasSubPages = pd->hasSubPages();
+      bool hasSections = pd->hasSections();
 
       ol.startIndexListItem();
       ol.startIndexItem(pd->getReference(),pd->getOutputFileBase());
@@ -2801,14 +2802,25 @@ static void writePageIndex(OutputList &ol)
       ol.writeString("\n");
       if (addToIndex)
       {
-        Doxygen::indexList.addContentsItem(hasSubPages,filterTitle(pageTitle),pd->getReference(),pd->getOutputFileBase(),0,hasSubPages,TRUE);
+        Doxygen::indexList.addContentsItem(
+               hasSubPages || hasSections,   // isDir
+               filterTitle(pageTitle),       // name
+               pd->getReference(),           // ref
+               pd->getOutputFileBase(),      // file
+               0,                            // anchor
+               hasSubPages || hasSections,   // separateIndex
+               TRUE);                        // addToNavIndex
+        if (hasSections)
+        {
+          pd->addSectionsToIndex();
+        }
       }
       writeSubPages(pd);
       ol.endIndexListItem();
     }
   }
   endIndexHierarchy(ol,0);
-  if (addToIndex)
+  if (0 /*addToIndex*/) // skip Related Pages section in navigation index
   {
     Doxygen::indexList.decContentsDepth();
   }
@@ -3445,8 +3457,12 @@ static void writeIndex(OutputList &ol)
   
   if (Doxygen::mainPage)
   {
-    Doxygen::indexList.addContentsItem(Doxygen::mainPage->hasSubPages(),title,0,indexName,0,Doxygen::mainPage->hasSubPages(),TRUE); 
-
+    if (Doxygen::mainPage->hasSubPages() || 
+        (!Config_getString("PROJECT_NAME").isEmpty() && mainPageHasTitle())
+       ) // to avoid duplicate entries in the treeview
+    {
+      Doxygen::indexList.addContentsItem(Doxygen::mainPage->hasSubPages(),title,0,indexName,0,Doxygen::mainPage->hasSubPages(),TRUE); 
+    }
     if (Doxygen::mainPage->hasSubPages())
     {
       writeSubPages(Doxygen::mainPage);
diff --git a/src/latexdocvisitor.cpp b/src/latexdocvisitor.cpp
index dc3b4e7..3dab3ce 100644
--- a/src/latexdocvisitor.cpp
+++ b/src/latexdocvisitor.cpp
@@ -53,8 +53,9 @@ static const char *secLabels[maxLevels] =
 
 static const char *getSectionName(int level)
 {
+  static bool compactLatex = Config_getBool("COMPACT_LATEX");
   int l = level;
-  if (Config_getBool("COMPACT_LATEX")) l++;
+  if (compactLatex) l++;
   if (Doxygen::insideMainPage) l--;
   return secLabels[QMIN(maxLevels-1,l)];
 }
@@ -62,10 +63,11 @@ static const char *getSectionName(int level)
 static int rowspan(DocHtmlCell *cell)
 {
   int retval = 0;
-  HtmlAttribList attrs = cell->attribs ();
-  for (unsigned int i = 0; i < attrs.count(); ++i) 
+  HtmlAttribList attrs = cell->attribs();
+  uint i;
+  for (i=0; i<attrs.count(); ++i) 
   {
-    if ("rowspan" == attrs.at(i)->name.lower())
+    if (attrs.at(i)->name.lower()=="rowspan")
     {
       retval = attrs.at(i)->value.toInt();
       break;
@@ -74,6 +76,24 @@ static int rowspan(DocHtmlCell *cell)
   return retval;
 }
 
+static int align(DocHtmlCell *cell)
+{
+  HtmlAttribList attrs = cell->attribs();
+  uint i;
+  for (i=0; i<attrs.count(); ++i) 
+  {
+    if (attrs.at(i)->name.lower()=="align")
+    {
+      if (attrs.at(i)->value.lower()=="center") 
+        return 1;
+      else if (attrs.at(i)->value.lower()=="right") 
+        return 2;
+      else return 0;
+    }
+  }
+  return 0;
+}
+
 QCString LatexDocVisitor::escapeMakeIndexChars(const char *s)
 {
   QCString result;
@@ -277,26 +297,19 @@ void LatexDocVisitor::visit(DocVerbatim *s)
 {
   //static bool latexSourceCode = Config_getBool("LATEX_SOURCE_CODE");
   if (m_hide) return;
+  QCString lang = m_langExt;
+  if (!s->language().isEmpty()) // explicit language setting
+  {
+    lang = s->language();
+  }
   switch(s->type())
   {
     case DocVerbatim::Code: 
-      //if (latexSourceCode)
-      //{
-      //  m_t << "\n\n\\begin{footnotesize}\\begin{alltt}" << endl; 
-      //}
-      //else
       {
         m_t << "\n\\begin{DoxyCode}\n";
-      }
-      Doxygen::parserManager->getParser(m_langExt)
-                            ->parseCode(m_ci,s->context(),s->text(),
-                                        s->isExample(),s->exampleFile());
-      //if (latexSourceCode)
-      //{
-      //  m_t << "\\end{alltt}\\end{footnotesize}" << endl; 
-      //}
-      //else
-      {
+        Doxygen::parserManager->getParser(lang)
+                              ->parseCode(m_ci,s->context(),s->text(),
+                                          s->isExample(),s->exampleFile());
         m_t << "\\end{DoxyCode}\n";
       }
       break;
@@ -883,9 +896,10 @@ void LatexDocVisitor::visitPost(DocHtmlCaption *)
   m_t << "}\n";
 }
 
-void LatexDocVisitor::visitPre(DocHtmlRow *)
+void LatexDocVisitor::visitPre(DocHtmlRow *r)
 {
   m_currentColumn = 0;
+  if (r->isHeading()) m_t << "\\rowcolor{lightgray}";
 }
 
 void LatexDocVisitor::visitPost(DocHtmlRow *) 
@@ -896,24 +910,30 @@ void LatexDocVisitor::visitPost(DocHtmlRow *)
   
   QMap<int, int>::Iterator it;
   int col = 1;
-    for (it = m_rowspanIndices.begin(); it != m_rowspanIndices.end(); ++it) 
+  for (it = m_rowspanIndices.begin(); it != m_rowspanIndices.end(); ++it) 
   {
     it.data()--;
     if (it.data () <= 0)
+    {
       m_rowspanIndices.remove (it);
+    }
     else if (0 < it.data() - col)
+    {
       m_t << "\\cline{" << col << "-" << it.data() - col << "}";
-      
-    col = 1 + it.data ();
     }
+      
+    col = 1 + it.data();
+  }
 
   if (col <= m_currentColumn)
+  {
     m_t << "\\cline{" << col << "-" << m_currentColumn << "}";
+  }
 
   m_t << "\n";
 }
 
-void LatexDocVisitor::visitPre(DocHtmlCell *cell)
+void LatexDocVisitor::visitPre(DocHtmlCell *c)
 {
   if (m_hide) return;
   
@@ -927,18 +947,35 @@ void LatexDocVisitor::visitPre(DocHtmlCell *cell)
     it++;
   }
 
-  int rs = rowspan(cell);
-  if (0 < rs)
+  int rs = rowspan(c);
+  if (rs>0)
   {
     m_inRowspan = TRUE;
     m_rowspanIndices[m_currentColumn] = rs;
     m_t << "\\multirow{" << rs << "}{\\linewidth}{";
   }
+  int a = align(c);
+  if (a==1)
+  {
+    m_t << "\\PBS\\centering ";
+  }
+  else if (a==2)
+  {
+    m_t << "\\PBS\\raggedleft ";
+  }
+  if (c->isHeading())
+  {
+    m_t << "{\\bf ";
+  }
 }
 
 void LatexDocVisitor::visitPost(DocHtmlCell *c) 
 {
   if (m_hide) return;
+  if (c->isHeading())
+  {
+    m_t << "}";
+  }
   if (m_inRowspan)
   {
     m_inRowspan = FALSE;
diff --git a/src/latexgen.cpp b/src/latexgen.cpp
index 6f92f79..65ed16b 100644
--- a/src/latexgen.cpp
+++ b/src/latexgen.cpp
@@ -72,18 +72,10 @@ LatexGenerator::~LatexGenerator()
 {
 }
 
-void LatexGenerator::init()
+static void writeLatexMakefile()
 {
   bool generateBib = !Doxygen::citeDict->isEmpty();
-
   QCString dir=Config_getString("LATEX_OUTPUT");
-  QDir d(dir);
-  if (!d.exists() && !d.mkdir(dir))
-  {
-    err("Could not create output directory %s\n",dir.data());
-    exit(1);
-  }
-  
   QCString fileName=dir+"/Makefile";
   QFile file(fileName);
   if (!file.open(IO_WriteOnly))
@@ -182,6 +174,66 @@ void LatexGenerator::init()
     << "\trm -f " 
 #endif
     << "*.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf" << endl;
+}
+
+static void writeMakePdfBat()
+{
+#if defined(_MSC_VER)
+  if (Config_getBool("USE_PDFLATEX")) // use plain old latex
+  {
+    bool generateBib = !Doxygen::citeDict->isEmpty();
+    QCString mkidx_command = Config_getString("MAKEINDEX_CMD_NAME");
+    QCString dir=Config_getString("LATEX_OUTPUT");
+    QCString fileName=dir+"/makepdf.bat";
+    QFile file(fileName);
+    if (!file.open(IO_WriteOnly))
+    {
+      err("Could not open file %s for writing\n",fileName.data());
+      exit(1);
+    }
+    FTextStream t(&file);
+    t << "del /s /f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf\n\n";
+    t << "pdflatex refman\n";
+    t << "echo ----\n";
+    t << mkidx_command << " refman.idx\n";
+    if (generateBib)
+    {
+      t << "\tbibtex refman" << endl;
+      t << "\tpdflatex refman" << endl;
+    }
+    t << "echo ----\n";
+    t << "pdflatex refman\n\n";
+    t << "setlocal enabledelayedexpansion\n";
+    t << "set count=5\n";
+    t << ":repeat\n";
+    t << "set content=X\n";
+    t << "for /F \"tokens=*\" %%T in ( 'findstr /C:\"Rerun LaTeX\" refman.log' ) do set content=\"%%~T\"\n";
+    t << "if !content! == X for /F \"tokens=*\" %%T in ( 'findstr /C:\"Rerun to get cross-references right\" refman.log' ) do set content=\"%%~T\"\n";
+    t << "if !content! == X goto :skip\n";
+    t << "set /a count-=1\n";
+    t << "if !count! EQU 0 goto :skip\n\n";
+    t << "echo ----\n";
+    t << "pdflatex refman\n";
+    t << "goto :repeat\n";
+    t << ":skip\n";
+    t << "endlocal\n";
+  }
+#endif
+}
+
+void LatexGenerator::init()
+{
+
+  QCString dir=Config_getString("LATEX_OUTPUT");
+  QDir d(dir);
+  if (!d.exists() && !d.mkdir(dir))
+  {
+    err("Could not create output directory %s\n",dir.data());
+    exit(1);
+  }
+
+  writeLatexMakefile();
+  writeMakePdfBat();
 
   createSubDirs(d);
 }
@@ -345,6 +397,7 @@ static void writeDefaultStyleSheetPart1(FTextStream &t)
        "\\RequirePackage{longtable}\n"
        "\\RequirePackage{verbatim}\n"
        "\\RequirePackage{ifthen}\n"
+       "\\RequirePackage{xtab}\n"
        "\\RequirePackage[table]{xcolor}\n\n";
 
   t << "% Use helvetica font instead of times roman\n"
@@ -788,10 +841,10 @@ static void writeDefaultStyleSheetPart3(FTextStream &t)
   t << "{\n";
   t << "\\setlength{\\tmplength}\n";
   t << "     {\\linewidth/(#1)-\\tabcolsep*2-\\arrayrulewidth*(#1+1)/(#1)}\n";
-  t << "      \\par\\begin{tabular*}{\\linewidth}\n";
+  t << "      \\par\\begin{xtabular*}{\\linewidth}\n";
   t << "             {*{#1}{|>{\\PBS\\raggedright\\hspace{0pt}}p{\\the\\tmplength}}|}\n";
   t << "}\n";
-  t << "{\\end{tabular*}\\par}\n";
+  t << "{\\end{xtabular*}\\par}\n";
   t << "\\newcommand{\\entrylabel}[1]{\n";
   t << "   {\\parbox[b]{\\labelwidth-4pt}{\\makebox[0pt][l]{%\n";
   t << "   \\usefont{OT1}{phv}{bc}{n}\\color{darkgray}#1}\\vspace{1.5\\baselineskip}}}}\n";
diff --git a/src/markdown.cpp b/src/markdown.cpp
index 42b5bee..95cf3c1 100644
--- a/src/markdown.cpp
+++ b/src/markdown.cpp
@@ -43,6 +43,14 @@
 #include "util.h"
 #include "doxygen.h"
 #include "commentscan.h"
+#include "entry.h"
+
+//-----------
+
+#define isIdChar(i) \
+      ((data[(i)]>='a' && data[(i)]<='z') || \
+       (data[(i)]>='A' && data[(i)]<='Z') || \
+       (data[(i)]>='0' && data[(i)]<='9'))   \
 
 //----------
 
@@ -62,6 +70,8 @@ enum Alignment { AlignNone, AlignLeft, AlignCenter, AlignRight };
 
 static QDict<LinkRef> g_linkRefs(257);
 static action_t       g_actions[256];
+static Entry         *g_current;
+static QCString       g_fileName;
 //static QDict<void>    g_htmlBlockTags(17);
 
 //----------
@@ -206,11 +216,7 @@ static int findEmphasisChar(const char *data, int size, char c)
 
     if (data[i] == c)
     {
-      if (i<size-1 && ((data[i+1]>='a' && data[i+1]<='z') || 
-                       (data[i+1]>='A' && data[i+1]<='Z') ||
-                       (data[i+1]>='0' && data[i+1]<='9')
-                      )
-         ) // to prevent touching some_underscore_identifier
+      if (i<size-1 && isIdChar(i+1)) // to prevent touching some_underscore_identifier
       {
         i++;
         continue;
@@ -397,11 +403,110 @@ static int processEmphasis3(GrowBuf &out, const char *data, int size, char c)
   return 0;
 }
 
-static int processEmphasis(GrowBuf &out,const char *data,int,int size)
+static int processHtmlTag(GrowBuf &out,const char *data,int offset,int size)
 {
+  if (offset>0 && data[-1]=='\\') return 0; // escaped <
+
+  // find the end of the html tag
+  int i=1;
+  int l=0;
+  // compute length of the tag name
+  while (i<size && isIdChar(i)) i++,l++;
+  QCString tagName;
+  convertStringFragment(tagName,data+1,i-1);
+  if (tagName.lower()=="pre") // found <pre> tag
+  {
+    bool insideStr=FALSE;
+    while (i<size-6)
+    {
+      char c=data[i];
+      if (!insideStr && c=='<') // potential start of html tag
+      {
+        if (data[i+1]=='/' &&
+            tolower(data[i+2])=='p' && tolower(data[i+3])=='r' &&
+            tolower(data[i+4])=='e' && tolower(data[i+5])=='>')
+        { // found </pre> tag, copy from start to end of tag
+          out.addStr(data,i+6);
+          //printf("found <pre>..</pre> [%d..%d]\n",0,i+6);
+          return i+6;
+        }
+      }
+      else if (insideStr && c=='"')
+      {
+        if (data[i-1]!='\\') insideStr=FALSE;
+      }
+      else if (c=='"')
+      {
+        insideStr=TRUE;
+      }
+      i++;
+    }
+  }
+  else // some other html tag
+  {
+    if (l>0 && i<size)
+    {
+      if (data[i]=='/' && i<size-1 && data[i+1]=='>') // <bla/>
+      {
+        //printf("Found htmlTag={%s}\n",QCString(data).left(i+2).data());
+        out.addStr(data,i+2);
+        return i+2;
+      }
+      else if (data[i]=='>') // <bla>
+      {
+        //printf("Found htmlTag={%s}\n",QCString(data).left(i+1).data());
+        out.addStr(data,i+1);
+        return i+1;
+      }
+      else if (data[i]==' ') // <bla attr=...
+      {
+        i++;
+        bool insideAttr=FALSE;
+        while (i<size)
+        {
+          if (!insideAttr && data[i]=='"')
+          {
+            insideAttr=TRUE;
+          }
+          else if (data[i]=='"' && data[i-1]!='\\')
+          {
+            insideAttr=FALSE;
+          }
+          else if (!insideAttr && data[i]=='>') // found end of tag
+          {
+            //printf("Found htmlTag={%s}\n",QCString(data).left(i+1).data());
+            out.addStr(data,i+1);
+            return i+1;
+          }
+          i++;
+        }
+      }
+    }
+  }
+  //printf("Not a valid html tag\n");
+  return 0;
+}
+
+static int processEmphasis(GrowBuf &out,const char *data,int offset,int size)
+{
+  if (offset>0 && size>1 && (isIdChar(-1) || data[-1]==data[0]))
+  {
+    if (isIdChar(1) || data[-1]==data[0])
+    {
+      // avoid processing interal * and  _ as cmd_id, or 4*10 as emphasis,
+      // also x**2,y*2 should not be processed
+      return 0;
+    }
+    else if (size>2 && data[0]==data[1] && isIdChar(2))
+    {
+      // avoid processing interal ** and  __ such as cmd__id__bla, 
+      // or 4**10,5**10 as emphasis
+      return 0;
+    }
+  }
   char c = data[0];
-  size_t ret;
-  if (size>2 && data[1]!=c)
+  int ret;
+  if (size>2 && data[1]!=c) // _bla or *bla
   {
     // whitespace cannot follow an opening emphasis
     if (data[1]==' ' || data[1]=='\n' || 
@@ -411,7 +516,7 @@ static int processEmphasis(GrowBuf &out,const char *data,int,int size)
     }
     return ret+1;
   }
-  if (size>3 && data[1]==c && data[2]!=c)
+  if (size>3 && data[1]==c && data[2]!=c) // __bla or **bla
   {
     if (data[2]==' ' || data[2]=='\n' || 
         (ret = processEmphasis2(out, data+2, size-2, c)) == 0)
@@ -420,7 +525,7 @@ static int processEmphasis(GrowBuf &out,const char *data,int,int size)
     }
     return ret+2;
   }
-  if (size>4 && data[1]==c && data[2]==c && data[3]!=c)
+  if (size>4 && data[1]==c && data[2]==c && data[3]!=c) // ___bla or ***bla
   {
     if (data[3]==' ' || data[3]=='\n' || 
         (ret = processEmphasis3(out, data+3, size-3, c)) == 0)
@@ -478,7 +583,7 @@ static int processLink(GrowBuf &out,const char *data,int,int size)
   contentEnd=i;
   convertStringFragment(content,data+contentStart,contentEnd-contentStart);
   //printf("processLink: content={%s}\n",content.data());
-  if (content.isEmpty()) return 0; // no link text
+  if (!isImageLink && content.isEmpty()) return 0; // no link text
   i++; // skip over ]
 
   // skip whitespace
@@ -588,7 +693,7 @@ static int processLink(GrowBuf &out,const char *data,int,int size)
     }
     i++;
   }
-  else if (i<size && data[i]!=':') // minimal link ref notation [some id]
+  else if (i<size && data[i]!=':' && !content.isEmpty()) // minimal link ref notation [some id]
   {
     LinkRef *lr = g_linkRefs.find(content.lower());
     //printf("processLink: minimal link {%s} lr=%p",content.data(),lr);
@@ -609,28 +714,33 @@ static int processLink(GrowBuf &out,const char *data,int,int size)
   {
     return 0;
   }
-  if (isImageLink) // TODO: use @image?
+  static QRegExp re("^[@\\]ref ");
+  if (isImageLink) 
   {
-    out.addStr("<img src=\"");
-    out.addStr(link);
-    out.addStr("\" alt=\"");
-    out.addStr(content);
-    out.addStr("\"");
-    if (!title.isEmpty())
+    if (link.find("@ref ")!=-1 || link.find("\\ref ")!=-1) 
+        // assume doxygen symbol link
     {
-      out.addStr(" title=\"");
-      out.addStr(substitute(title.simplifyWhiteSpace(),"\"","&quot;"));
-      out.addStr("\"");
+      out.addStr("@image html ");
+      out.addStr(link.mid(5));
+      if (!explicitTitle && !content.isEmpty())
+      { 
+        out.addStr(" \"");
+        out.addStr(content);
+        out.addStr("\"");
+      }
+      else if ((content.isEmpty() || explicitTitle) && !title.isEmpty())
+      {
+        out.addStr(" \"");
+        out.addStr(title);
+        out.addStr("\"");
+      }
     }
-    out.addStr("/>");
-  }
-  else
-  {
-    static QRegExp re("^[@\\]ref ");
-    if (link.find('/')!=-1) // file/url link
+    else
     {
-      out.addStr("<a href=\"");
+      out.addStr("<img src=\"");
       out.addStr(link);
+      out.addStr("\" alt=\"");
+      out.addStr(content);
       out.addStr("\"");
       if (!title.isEmpty())
       {
@@ -638,11 +748,12 @@ static int processLink(GrowBuf &out,const char *data,int,int size)
         out.addStr(substitute(title.simplifyWhiteSpace(),"\"","&quot;"));
         out.addStr("\"");
       }
-      out.addStr(">");
-      out.addStr(content.simplifyWhiteSpace());
-      out.addStr("</a>");
+      out.addStr("/>");
     }
-    else if (link.find("@ref ")!=-1 || link.find("\\ref ")!=-1) 
+  }
+  else
+  {
+    if (link.find("@ref ")!=-1 || link.find("\\ref ")!=-1) 
         // assume doxygen symbol link
     {
       out.addStr(link);
@@ -657,7 +768,22 @@ static int processLink(GrowBuf &out,const char *data,int,int size)
       }
       out.addStr("\"");
     }
-    else // avoid link to F[x](y)
+    else if (link.find('/')!=-1 || link.find('.')!=-1 || link.find('#')!=-1) 
+    { // file/url link
+      out.addStr("<a href=\"");
+      out.addStr(link);
+      out.addStr("\"");
+      if (!title.isEmpty())
+      {
+        out.addStr(" title=\"");
+        out.addStr(substitute(title.simplifyWhiteSpace(),"\"","&quot;"));
+        out.addStr("\"");
+      }
+      out.addStr(">");
+      out.addStr(content.simplifyWhiteSpace());
+      out.addStr("</a>");
+    }
+    else // avoid link to e.g. F[x](y)
     {
       //printf("no link for '%s'\n",link.data());
       return 0;
@@ -722,17 +848,14 @@ static int processCodeSpan(GrowBuf &out, const char *data, int /*offset*/, int s
     i=f_begin;
     while (i<f_end-1)
     {
-      if (data[i]=='\'' && !((data[i+1]>='a' && data[i+1]<='z') ||
-                             (data[i+1]>='A' && data[i+1]<='Z') ||
-                             (data[i+1]>='0' && data[i+1]<='9')
-                            )) // reject `some word' and not `it's cool`
+      if (data[i]=='\'' && !isIdChar(i+1)) // reject `some word' and not `it's cool`
       {
         return 0;
       }
       i++;
     }
   }
-  printf("found code span '%s'\n",QCString(data+f_begin).left(f_end-f_begin).data());
+  //printf("found code span '%s'\n",QCString(data+f_begin).left(f_end-f_begin).data());
 
   /* real code span */
   if (f_begin < f_end)
@@ -783,28 +906,6 @@ static int processSpecialCommand(GrowBuf &out, const char *data, int offset, int
   return 0;
 }
 
-#if 0
-static int processHtmlBlock(GrowBuf &out, const char *data, int offset, int size)
-{
-  if (size<2 || data[0]!='<') return 0;
-  int i=1;
-  while (i<size && ((data[i]>='0' && data[i]<='9') ||
-                    (data[i]>='A' && data[i]<='Z') ||
-                    (data[i]>='a' && data[i]<='z'))) i++;
-  if (i<=1 || i>=size) return 0;
-  QCString tagName;
-  convertStringFragment(tagName,data+1,i-1);
-  printf("found html tag '%s'\n",tagName.data());
-  if (g_htmlBlockTags.find(tagName)!=0)
-  {
-    printf("found block tag\n");
-
-    // search for end of the block...
-  }
-  return 0;
-}
-#endif
-
 static void processInline(GrowBuf &out,const char *data,int size)
 {
   int i=0, end=0;
@@ -856,7 +957,24 @@ static bool isBlockQuote(const char *data,int size,int indent)
 {
   int i = 0;
   while (i<size && data[i]==' ') i++;
-  return i<size && data[i]=='>' && i<indent+codeBlockIndent;
+  if (i<indent+codeBlockIndent) // could be a quotation
+  {
+    // count >'s and skip spaces
+    int level=0;
+    while (i<size && (data[i]=='>' || data[i]==' ')) 
+    {
+      if (data[i]=='>') level++;
+      i++;
+    }
+    // last characters should be a space or newline, 
+    // so a line starting with >= does not match
+    return level>0 && i<size && ((data[i-1]==' ') || data[i]=='\n'); 
+  }
+  else // too much indentation -> code block
+  {
+    return FALSE;
+  }
+  //return i<size && data[i]=='>' && i<indent+codeBlockIndent;
 }
 
 /** returns end of the link ref if this is indeed a link reference. */
@@ -979,7 +1097,7 @@ static int isHRuler(const char *data,int size)
 
 static QCString extractTitleId(QCString &title)
 {
-  static QRegExp r1("^[a-z_A-Z][a-z_A-Z0-9\\-]*:");
+  //static QRegExp r1("^[a-z_A-Z][a-z_A-Z0-9\\-]*:");
   static QRegExp r2("\\{#[a-z_A-Z][a-z_A-Z0-9\\-]*\\}$");
   int l=0;
   int i = r2.match(title,0,&l);
@@ -990,20 +1108,21 @@ static QCString extractTitleId(QCString &title)
     //printf("found id='%s' title='%s'\n",id.data(),title.data());
     return id;
   }
-  i = r1.match(title,0,&l);
-  if (i!=-1) // found id: style id
-  {
-    QCString id = title.mid(i,l-1);
-    title = title.left(i)+title.mid(i+l);
-    //printf("found id='%s' title='%s'\n",id.data(),title.data());
-    return id;
-  }
+  //i = r1.match(title,0,&l);
+  //if (i!=-1) // found id: style id
+  //{
+  //  QCString id = title.mid(i,l-1);
+  //  title = title.left(i)+title.mid(i+l);
+  //  //printf("found id='%s' title='%s'\n",id.data(),title.data());
+  //  return id;
+  //}
   //printf("no id found in title '%s'\n",title.data());
   return "";
 }
 
 
-static int isAtxHeader(const char *data,int size,QCString &header)
+static int isAtxHeader(const char *data,int size,
+                       QCString &header,QCString &id)
 {
   int i = 0, end;
   int level = 0;
@@ -1021,6 +1140,13 @@ static int isAtxHeader(const char *data,int size,QCString &header)
 
   // store result
   convertStringFragment(header,data+i,end-i);
+  id = extractTitleId(header);
+  if (!id.isEmpty()) // strip #'s between title and id
+  {
+    i=header.length()-1;
+    while (i>=0 && header.at(i)=='#' || header.at(i)==' ') i--;
+    header=header.left(i+1);
+  }
 
   return level;
 }
@@ -1037,19 +1163,29 @@ static int isEmptyLine(const char *data,int size)
   return TRUE;
 }
 
+#define isLiTag(i) \
+   (data[(i)]=='<' && \
+   (data[(i)+1]=='l' || data[(i)+1]=='L') && \
+   (data[(i)+2]=='i' || data[(i)+2]=='I') && \
+   (data[(i)+3]=='>'))
+
 // compute the indent from the start of the input, excluding list markers
-// such as -, *, +, and 1.
+// such as -, -#, *, +, 1., and <li>
 static int computeIndentExcludingListMarkers(const char *data,int size)
 {
   int i=0;
   int indent=0;
   bool isDigit=FALSE;
+  bool isLi=FALSE;
   bool listMarkerSkipped=FALSE;
   while (i<size && 
          (data[i]==' ' ||                                    // space
           (!listMarkerSkipped &&                             // first list marker
            (data[i]=='+' || data[i]=='-' || data[i]=='*' ||  // unordered list char
-           (isDigit=(data[i]>='1' && data[i]<='9')))         // ordered list marker?
+            (data[i]=='#' && i>0 && data[i-1]=='-') ||       // -# item
+            (isDigit=(data[i]>='1' && data[i]<='9')) ||      // ordered list marker?
+            (isLi=(i<size-3 && isLiTag(i)))                  // <li> tag
+           )
           )
          )
         ) 
@@ -1076,12 +1212,24 @@ static int computeIndentExcludingListMarkers(const char *data,int size)
         j++;
       }
     }
-    else if (data[i]!=' ' && i<size-1 && data[i+1]==' ')
+    else if (isLi)
     {
+      i+=3; // skip over <li>
+      indent+=3;
+      listMarkerSkipped=TRUE;
+    }
+    else if (data[i]=='-' && i<size-2 && data[i+1]=='#' && data[i+2]==' ')
+    { // case "-# "
+      listMarkerSkipped=TRUE; // only a single list marker is accepted
+      i++; // skip over #
+      indent++;
+    }
+    else if (data[i]!=' ' && i<size-1 && data[i+1]==' ')
+    { // case "- " or "+ " or "* "
       listMarkerSkipped=TRUE; // only a single list marker is accepted
     }
     if (data[i]!=' ' && !listMarkerSkipped)
-    {
+    { // end of indent
       break;
     }
     indent++,i++;
@@ -1090,6 +1238,44 @@ static int computeIndentExcludingListMarkers(const char *data,int size)
   return indent;
 }
 
+static bool isFencedCodeBlock(const char *data,int size,int refIndent,
+                             QCString &lang,int &start,int &end,int &offset)
+{
+  // TODO: implement me...
+  // rules: at least 3 ~~~, end of the block same amount of ~~~'s, otherwise
+  // return FALSE
+  int i=0;
+  int indent=0;
+  int startTildes=0;
+  while (i<size && data[i]==' ') indent++,i++;
+  if (indent>=refIndent+4) return FALSE; // part of code block
+  while (i<size && data[i]=='~') startTildes++,i++;
+  if (startTildes<3) return FALSE; // not enough tildes
+  if (i<size && data[i]=='{') i++; // skip over optional {
+  int startLang=i;
+  while (i<size && (data[i]!='\n' && data[i]!='}' && data[i]!=' ')) i++;
+  convertStringFragment(lang,data+startLang,i-startLang);
+  while (i<size && data[i]!='\n') i++; // proceed to the end of the line
+  start=i;
+  while (i<size)
+  {
+    if (data[i]=='~')
+    {
+      end=i-1;
+      int endTildes=0;
+      while (i<size && data[i]=='~') endTildes++,i++; 
+      while (i<size && data[i]==' ') i++;
+      if (i==size || data[i]=='\n') 
+      {
+        offset=i;
+        return endTildes==startTildes;
+      }
+    }
+    i++;
+  }
+  return FALSE;
+}
+
 static bool isCodeBlock(const char *data,int offset,int size,int &indent)
 {
   //printf("<isCodeBlock(offset=%d,size=%d,indent=%d)\n",offset,size,indent);
@@ -1244,16 +1430,9 @@ static int writeTableBlock(GrowBuf &out,const char *data,int size)
 
   // write table header, in range [start..end]
   out.addStr("<tr>");
-  j=start;
-  for (k=0;k<columns;k++)
-  {
-    out.addStr("<th>");
-    while (j<=end && (data[j]!='|' || (j>0 && data[j-1]=='\\')))
-    {
-      out.addChar(data[j++]);
-    }
-    j++;
-  }
+
+  int headerStart = start;
+  int headerEnd = end;
 
   // read cell alignments
   int ret = findTableColumns(data+i,size-i,start,end,cc);
@@ -1295,6 +1474,25 @@ static int writeTableBlock(GrowBuf &out,const char *data,int size)
   // proceed to next line
   i+=ret;
 
+  int m=headerStart;
+  for (k=0;k<columns;k++)
+  {
+    out.addStr("<th");
+    switch (columnAlignment[k])
+    {
+      case AlignLeft:   out.addStr(" align=left"); break;
+      case AlignRight:  out.addStr(" align=right"); break;
+      case AlignCenter: out.addStr(" align=center"); break;
+      case AlignNone:   break;
+    }
+    out.addStr(">");
+    while (m<=headerEnd && (data[m]!='|' || (m>0 && data[m-1]=='\\')))
+    {
+      out.addChar(data[m++]);
+    }
+    m++;
+  }
+
   // write table cells
   while (i<size)
   {
@@ -1348,17 +1546,44 @@ void writeOneLineHeaderOrRuler(GrowBuf &out,const char *data,int size)
 {
   int level;
   QCString header;
+  QCString id;
   if (isHRuler(data,size))
   {
     out.addStr("<hr>\n");
   }
-  else if ((level=isAtxHeader(data,size,header)))
+  else if ((level=isAtxHeader(data,size,header,id)))
   {
     QCString hTag;
-    hTag.sprintf("h%d",level);
-    out.addStr("<"+hTag+">");
-    out.addStr(header); 
-    out.addStr("</"+hTag+">\n");
+    if (level<5 && !id.isEmpty())
+    {
+      switch(level)
+      {
+        case 1:  out.addStr("@section "); break;
+        case 2:  out.addStr("@subsection "); break;
+        case 3:  out.addStr("@subsubsection "); break;
+        default: out.addStr("@paragraph "); break;
+      }
+      out.addStr(id);
+      out.addStr(" ");
+      out.addStr(header);
+      SectionInfo *si = new SectionInfo(g_fileName,id,header,SectionInfo::Anchor,level);
+      if (g_current)
+      {
+        g_current->anchors->append(si);
+      }
+      Doxygen::sectionDict.append(header,si);
+    }
+    else
+    {
+      if (!id.isEmpty())
+      {
+        out.addStr("\\anchor "+id+"\n");
+      }
+      hTag.sprintf("h%d",level);
+      out.addStr("<"+hTag+">");
+      out.addStr(header); 
+      out.addStr("</"+hTag+">\n");
+    }
   }
   else // nothing interesting -> just output the line
   {
@@ -1387,6 +1612,11 @@ static int writeBlockQuote(GrowBuf &out,const char *data,int size)
       else if (j>0 && data[j-1]=='>') indent=j+1;
       j++;
     }
+    if (j>0 && data[j-1]=='>') // disqualify last > if not followed by space
+    {
+      indent--;
+      j--;
+    }
     if (level>curLevel) // quote level increased => add start markers
     {
       for (l=curLevel;l<level;l++)
@@ -1458,11 +1688,12 @@ static void findEndOfLine(GrowBuf &out,const char *data,int size,
                           int &pi,int&i,int &end)
 {
   // find end of the line
+  int nb=0;
   for (end=i+1; end<size && data[end-1]!='\n'; end++)
   {
     // while looking for the end of the line we might encounter a block
     // that needs to be passed unprocessed.
-    if ((data[end-1]=='\\' || data[end-1]=='@') &&            // command
+    if ((data[end-1]=='\\' || data[end-1]=='@') &&          // command
         (end<=1 || (data[end-2]!='\\' && data[end-2]!='@')) // not escaped
        )
     {
@@ -1493,6 +1724,36 @@ static void findEndOfLine(GrowBuf &out,const char *data,int size,
         }
       }
     }
+    else if (nb==0 && data[end-1]=='<' && end<size-6 &&
+             (end<=1 || (data[end-2]!='\\' && data[end-2]!='@'))
+            )
+    {
+      if (tolower(data[end])=='p' && tolower(data[end+1])=='r' &&
+          tolower(data[end+2])=='e' && data[end+3]=='>') // <pre> tag
+      {
+        if (pi!=-1) // output previous line if available
+        {
+          out.addStr(data+pi,i-pi);
+        }
+        // output part until <pre>
+        out.addStr(data+i,end-1-i); 
+        // output part until </pre>
+        i = end-1 + processHtmlTag(out,data+end-1,end-1,size-end+1);
+        pi=-1;
+        end = i+1;
+        break;
+      }
+    }
+    else if (nb==0 && data[end-1]=='`') 
+    {
+      while (end<size && data[end-1]=='`') end++,nb++;
+    }
+    else if (nb>0 && data[end-1]=='`')
+    {
+      int enb=0;
+      while (end<size && data[end-1]=='`') end++,enb++;
+      if (enb==nb) nb=0;
+    }
   }
 }
 
@@ -1578,17 +1839,38 @@ static QCString processBlocks(const QCString &s,int indent)
 
     if (pi!=-1)
     {
+      int blockStart,blockEnd,blockOffset;
+      QCString lang;
       blockIndent = indent;
       //printf("isHeaderLine(%s)=%d\n",QCString(data+i).left(size-i).data(),level);
       if ((level=isHeaderline(data+i,size-i))>0)
       {
         //printf("Found header at %d-%d\n",i,end);
         while (pi<size && data[pi]==' ') pi++;
-        if (i-pi>1)
+        QCString header,id;
+        convertStringFragment(header,data+pi,i-pi-1);
+        id = extractTitleId(header);
+        if (!header.isEmpty())
         {
-          out.addStr(level==1?"<h1>":"<h2>");
-          out.addStr(data+pi,i-pi-1);
-          out.addStr(level==1?"</h1>\n":"</h2>\n");
+          if (!id.isEmpty())
+          {
+            out.addStr(level==1?"@section ":"@subsection ");
+            out.addStr(id);
+            out.addStr(" ");
+            out.addStr(header);
+            SectionInfo *si = new SectionInfo(g_fileName,id,header,SectionInfo::Anchor,level);
+            if (g_current)
+            {
+              g_current->anchors->append(si);
+            }
+            Doxygen::sectionDict.append(header,si);
+          }
+          else
+          {
+            out.addStr(level==1?"<h1>":"<h2>");
+            out.addStr(header);
+            out.addStr(level==1?"</h1>\n":"</h2>\n");
+          }
         }
         else
         {
@@ -1608,6 +1890,23 @@ static QCString processBlocks(const QCString &s,int indent)
         pi=-1;
         end=i+1;
       }
+      else if (isFencedCodeBlock(data+pi,size-pi,indent,lang,blockStart,blockEnd,blockOffset))
+      {
+        //printf("Found FencedCodeBlock lang='%s' start=%d end=%d code={%s}\n",
+        //       lang.data(),blockStart,blockEnd,QCString(data+pi+blockStart).left(blockEnd-blockStart).data());
+        out.addStr("@code");
+        if (!lang.isEmpty() && lang.at(0)=='.') lang=lang.mid(1);
+        if (!lang.isEmpty())
+        {
+          out.addStr("{"+lang+"}");
+        }
+        out.addStr(data+pi+blockStart,blockEnd-blockStart);       
+        out.addStr("\n@endcode");
+        i=pi+blockOffset;
+        pi=-1;
+        end=i+1;
+        continue;
+      }
       else if (isCodeBlock(data+i,i,end-i,blockIndent))
       //if (isCodeBlock(data+pi,pi,end-pi,blockIndent))
       {
@@ -1651,7 +1950,7 @@ static QCString processBlocks(const QCString &s,int indent)
   return out.get();
 }
 
-static QCString extractPageTitle(QCString &docs)
+static QCString extractPageTitle(QCString &docs,QCString &id)
 {
   // first first non-empty line
   QCString title;
@@ -1671,16 +1970,19 @@ static QCString extractPageTitle(QCString &docs)
     while (end2<size && data[end2-1]!='\n') end2++;
     if (isHeaderline(data+end1,size-end1))
     {
-      convertStringFragment(title,data+i,end1-i);
+      convertStringFragment(title,data+i,end1-i-1);
       docs=docs.mid(end2);
+      id = extractTitleId(title);
+      //printf("extractPageTitle(title='%s' docs='%s' id='%s')\n",title.data(),docs.data(),id.data());
       return title;
     }
   }
-  if (i<end1 && isAtxHeader(data+i,end1-i,title)>0)
+  if (i<end1 && isAtxHeader(data+i,end1-i,title,id)>0)
   {
     docs=docs.mid(end1);
   }
-  //printf("extractPageTitle(title='%s' docs='%s')\n",title.data(),docs.data());
+  id = extractTitleId(title);
+  //printf("extractPageTitle(title='%s' docs='%s' id='%s')\n",title.data(),docs.data(),id.data());
   return title;
 }
 
@@ -1727,36 +2029,12 @@ static QCString detab(const QCString &s,int &refIndent)
 
 //---------------------------------------------------------------------------
 
-QCString processMarkdown(const QCString &input)
+QCString processMarkdown(const QCString &fileName,Entry *e,const QCString &input)
 {
-#if 0
-  static bool g_init = FALSE;
-  if (!g_init)
-  {
-    g_htmlBlockTags.insert("p",(void*)0x8);
-    g_htmlBlockTags.insert("dl",(void*)0x8);
-    g_htmlBlockTags.insert("h1",(void*)0x8);
-    g_htmlBlockTags.insert("h2",(void*)0x8);
-    g_htmlBlockTags.insert("h3",(void*)0x8);
-    g_htmlBlockTags.insert("h4",(void*)0x8);
-    g_htmlBlockTags.insert("h5",(void*)0x8);
-    g_htmlBlockTags.insert("h6",(void*)0x8);
-    g_htmlBlockTags.insert("ol",(void*)0x8);
-    g_htmlBlockTags.insert("ul",(void*)0x8);
-    g_htmlBlockTags.insert("div",(void*)0x8);
-    g_htmlBlockTags.insert("pre",(void*)0x8);
-    g_htmlBlockTags.insert("form",(void*)0x8);
-    g_htmlBlockTags.insert("math",(void*)0x8);
-    g_htmlBlockTags.insert("table",(void*)0x8);
-    g_htmlBlockTags.insert("iframe",(void*)0x8);
-    g_htmlBlockTags.insert("script",(void*)0x8);
-    g_htmlBlockTags.insert("fieldset",(void*)0x8);
-    g_htmlBlockTags.insert("noscript",(void*)0x8);
-    g_init=TRUE;
-  }
-#endif
   g_linkRefs.setAutoDelete(TRUE);
   g_linkRefs.clear();
+  g_current = e;
+  g_fileName = fileName;
   static GrowBuf out;
   if (input.isEmpty()) return input;
   out.clear();
@@ -1777,7 +2055,7 @@ QCString processMarkdown(const QCString &input)
   g_actions['@']=processSpecialCommand;
   g_actions['[']=processLink;
   g_actions['!']=processLink;
-  //g_actions['<']=processHtmlBlock;
+  g_actions['<']=processHtmlTag;
   // finally process the inline markup (links, emphasis and code spans)
   processInline(out,s,size);
   out.addChar(0);
@@ -1794,10 +2072,11 @@ void MarkdownFileParser::parseInput(const char *fileName,
   Entry *current = new Entry;
   current->lang = SrcLangExt_Markdown;
   QCString docs = fileBuf;
-  QCString title=extractPageTitle(docs).stripWhiteSpace();
-  QCString id=extractTitleId(title);
+  QCString id;
+  QCString title=extractPageTitle(docs,id).stripWhiteSpace();
   QCString baseName = substitute(QFileInfo(fileName).baseName().utf8()," ","_");
   if (id.isEmpty()) id = "md_"+baseName;
+  if (title.isEmpty()) title = baseName;
   if (id=="mainpage" || id=="index")
   {
     docs.prepend("@mainpage "+title+"\n");
diff --git a/src/markdown.h b/src/markdown.h
index 616c01e..885d659 100644
--- a/src/markdown.h
+++ b/src/markdown.h
@@ -19,8 +19,10 @@
 #include <qcstring.h>
 #include "parserintf.h"
 
+class Entry;
+
 /** processes string \a s and converts markdown into doxygen/html commands. */
-QCString processMarkdown(const QCString &s);
+QCString processMarkdown(const QCString &fileName,Entry *e,const QCString &s);
 
 class MarkdownFileParser : public ParserInterface
 {
diff --git a/src/marshal.cpp b/src/marshal.cpp
index 0675277..d366c57 100644
--- a/src/marshal.cpp
+++ b/src/marshal.cpp
@@ -157,6 +157,7 @@ void marshalSectionInfoList(StorageIntf *s, QList<SectionInfo> *anchors)
       marshalQCString(s,si->ref);
       marshalInt(s,(int)si->type);
       marshalQCString(s,si->fileName);
+      marshalInt(s,si->level);
     }
   }
 }
@@ -195,7 +196,7 @@ void marshalSectionDict(StorageIntf *s,SectionDict *sections)
   else
   {
     marshalUInt(s,sections->count());
-    QDictIterator<SectionInfo> sli(*sections);
+    SDict<SectionInfo>::IteratorDict sli(*sections);
     SectionInfo *si;
     for (sli.toFirst();(si=sli.current());++sli)
     {
@@ -576,7 +577,8 @@ QList<SectionInfo> *unmarshalSectionInfoList(StorageIntf *s)
     QCString ref   = unmarshalQCString(s);
     SectionInfo::SectionType type = (SectionInfo::SectionType)unmarshalInt(s);
     QCString fileName = unmarshalQCString(s);
-    result->append(new SectionInfo(fileName,label,title,type,ref));
+    int level = unmarshalInt(s);
+    result->append(new SectionInfo(fileName,label,title,type,level,ref));
   }
   return result;
 }
@@ -619,7 +621,7 @@ SectionDict *unmarshalSectionDict(StorageIntf *s)
     QCString key    = unmarshalQCString(s);
     SectionInfo *si = (SectionInfo *)unmarshalObjPointer(s);
     //printf("  unmarshalSectionDict i=%d key=%s si=%s\n",count,key.data(),si->label.data());
-    result->insert(key,si);
+    result->append(key,si);
   }
   return result;
 }
diff --git a/src/navtree.js b/src/navtree.js
index b0c4936..eb18215 100644
--- a/src/navtree.js
+++ b/src/navtree.js
@@ -210,6 +210,21 @@ function expandNode(o, node, imm, showRoot)
   }
 }
 
+function highlightAnchor()
+{
+  var anchor = $($(location).attr('hash'));
+  if (anchor.parent().attr('class')=='memItemLeft'){
+    var rows = $('.memberdecls tr[class$=\""'+
+        window.location.hash.substring(1)+'"\"]').children();
+    rows.effect('highlight',{},1500);
+  } else if (anchor.parent().is(":header")) {
+    anchor.parent().effect('highlight',{},1500);
+  } else {
+    var targetDiv = anchor.next();
+    $(targetDiv).children('.memproto,.memdoc').effect("highlight",{},1500);
+  }
+}
+
 function showNode(o, node, index)
 {
   if (node.childrenData && !node.expanded) {
@@ -249,15 +264,12 @@ function showNode(o, node, index)
           if ($(location).attr('hash')) {
             var link=stripPath($(location).attr('pathname'))+':'+
                      $(location).attr('hash').substring(1);
-            a=$('.item a[class*=\""'+link+'"\"]');
+            a=$('.item a[class$=\""'+link+'"\"]');
           }
           if (a && a.length) {
             a.parent().parent().addClass('selected');
             a.parent().parent().attr('id','selected');
-            var anchor = $($(location).attr('hash'));
-            var targetDiv = anchor.next();
-            $(targetDiv).children('.memproto,.memdoc').
-                     effect("highlight", {}, 1500);
+            highlightAnchor();
           } else {
             $(n.itemDiv).addClass('selected');
             $(n.itemDiv).attr('id','selected');
@@ -302,7 +314,8 @@ function initNavTree(toroot,relpath)
   getScript(relpath+"navtreeindex",function(){
     var navTreeIndex = eval('NAVTREEINDEX');
     if (navTreeIndex) {
-      o.breadcrumbs = navTreeIndex[toroot];
+      var nti = navTreeIndex[toroot+window.location.hash];
+      o.breadcrumbs = nti ? nti : navTreeIndex[toroot];
       if (o.breadcrumbs==null) o.breadcrumbs = navTreeIndex["index.html"];
       o.breadcrumbs.unshift(0);
       showNode(o, o.node, 0);
@@ -311,20 +324,12 @@ function initNavTree(toroot,relpath)
 
   $(window).bind('hashchange', function(){
      if (window.location.hash && window.location.hash.length>1){
-       var anchor = $(window.location.hash);
-       if (anchor.parent().attr('class')=='memItemLeft'){
-         var rows = $('.memberdecls tr[class$=\""'+
-                    window.location.hash.substring(1)+'"\"]').children();
-         rows.effect('highlight',{},1500);
-       } else {
-         var targetDiv = anchor.next();
-         $(targetDiv).children('.memproto,.memdoc').effect("highlight",{},1500);
-       }
+       highlightAnchor();
        var a;
        if ($(location).attr('hash')){
          var link=stripPath($(location).attr('pathname'))+':'+
                   $(location).attr('hash').substring(1);
-         a=$('.item a[class*=\""'+link+'"\"]');
+         a=$('.item a[class$=\""'+link+'"\"]');
        }
        if (a && a.length){
          $('.item').removeClass('selected');
diff --git a/src/navtree_js.h b/src/navtree_js.h
index c231b6b..63c104b 100644
--- a/src/navtree_js.h
+++ b/src/navtree_js.h
@@ -210,6 +210,21 @@
 "  }\n"
 "}\n"
 "\n"
+"function highlightAnchor()\n"
+"{\n"
+"  var anchor = $($(location).attr('hash'));\n"
+"  if (anchor.parent().attr('class')=='memItemLeft'){\n"
+"    var rows = $('.memberdecls tr[class$=\\\"\"'+\n"
+"        window.location.hash.substring(1)+'\"\\\"]').children();\n"
+"    rows.effect('highlight',{},1500);\n"
+"  } else if (anchor.parent().is(\":header\")) {\n"
+"    anchor.parent().effect('highlight',{},1500);\n"
+"  } else {\n"
+"    var targetDiv = anchor.next();\n"
+"    $(targetDiv).children('.memproto,.memdoc').effect(\"highlight\",{},1500);\n"
+"  }\n"
+"}\n"
+"\n"
 "function showNode(o, node, index)\n"
 "{\n"
 "  if (node.childrenData && !node.expanded) {\n"
@@ -249,15 +264,12 @@
 "          if ($(location).attr('hash')) {\n"
 "            var link=stripPath($(location).attr('pathname'))+':'+\n"
 "                     $(location).attr('hash').substring(1);\n"
-"            a=$('.item a[class*=\\\"\"'+link+'\"\\\"]');\n"
+"            a=$('.item a[class$=\\\"\"'+link+'\"\\\"]');\n"
 "          }\n"
 "          if (a && a.length) {\n"
 "            a.parent().parent().addClass('selected');\n"
 "            a.parent().parent().attr('id','selected');\n"
-"            var anchor = $($(location).attr('hash'));\n"
-"            var targetDiv = anchor.next();\n"
-"            $(targetDiv).children('.memproto,.memdoc').\n"
-"                     effect(\"highlight\", {}, 1500);\n"
+"            highlightAnchor();\n"
 "          } else {\n"
 "            $(n.itemDiv).addClass('selected');\n"
 "            $(n.itemDiv).attr('id','selected');\n"
@@ -302,7 +314,8 @@
 "  getScript(relpath+\"navtreeindex\",function(){\n"
 "    var navTreeIndex = eval('NAVTREEINDEX');\n"
 "    if (navTreeIndex) {\n"
-"      o.breadcrumbs = navTreeIndex[toroot];\n"
+"      var nti = navTreeIndex[toroot+window.location.hash];\n"
+"      o.breadcrumbs = nti ? nti : navTreeIndex[toroot];\n"
 "      if (o.breadcrumbs==null) o.breadcrumbs = navTreeIndex[\"index.html\"];\n"
 "      o.breadcrumbs.unshift(0);\n"
 "      showNode(o, o.node, 0);\n"
@@ -311,20 +324,12 @@
 "\n"
 "  $(window).bind('hashchange', function(){\n"
 "     if (window.location.hash && window.location.hash.length>1){\n"
-"       var anchor = $(window.location.hash);\n"
-"       if (anchor.parent().attr('class')=='memItemLeft'){\n"
-"         var rows = $('.memberdecls tr[class$=\\\"\"'+\n"
-"                    window.location.hash.substring(1)+'\"\\\"]').children();\n"
-"         rows.effect('highlight',{},1500);\n"
-"       } else {\n"
-"         var targetDiv = anchor.next();\n"
-"         $(targetDiv).children('.memproto,.memdoc').effect(\"highlight\",{},1500);\n"
-"       }\n"
+"       highlightAnchor();\n"
 "       var a;\n"
 "       if ($(location).attr('hash')){\n"
 "         var link=stripPath($(location).attr('pathname'))+':'+\n"
 "                  $(location).attr('hash').substring(1);\n"
-"         a=$('.item a[class*=\\\"\"'+link+'\"\\\"]');\n"
+"         a=$('.item a[class$=\\\"\"'+link+'\"\\\"]');\n"
 "       }\n"
 "       if (a && a.length){\n"
 "         $('.item').removeClass('selected');\n"
diff --git a/src/parserintf.h b/src/parserintf.h
index 6e79162..2e5397e 100644
--- a/src/parserintf.h
+++ b/src/parserintf.h
@@ -120,8 +120,8 @@ class ParserManager
      *  @param[in] name      A symbolic name of the parser, i.e. "c",
      *                       "python", "fortran", "vhdl", ...
      *  @param[in] parser    The parser that is to be used for the
-     *             given extension.
-     *  @param[in] defParser Use this parser as the default parser, using
+     *                       given name.
+     *  @param[in] defParser Use this parser as the default parser, used
      *                       for unregistered file extensions.
      */
     void registerParser(const char *name,ParserInterface *parser,bool defParser=FALSE)
diff --git a/src/rtfdocvisitor.cpp b/src/rtfdocvisitor.cpp
index 4923bb1..e49a8ed 100644
--- a/src/rtfdocvisitor.cpp
+++ b/src/rtfdocvisitor.cpp
@@ -328,13 +328,18 @@ void RTFDocVisitor::visit(DocVerbatim *s)
 {
   if (m_hide) return;
   DBG_RTF("{\\comment RTFDocVisitor::visit(DocVerbatim)}\n");
+  QCString lang = m_langExt;
+  if (!s->language().isEmpty()) // explicit language setting
+  {
+    lang = s->language();
+  }
   switch(s->type())
   {
     case DocVerbatim::Code: // fall though
       m_t << "{" << endl;
       m_t << "\\par" << endl;
       m_t << rtf_Style_Reset << getStyle("CodeExample");
-      Doxygen::parserManager->getParser(m_langExt)
+      Doxygen::parserManager->getParser(lang)
                             ->parseCode(m_ci,s->context(),s->text(),
                                         s->isExample(),s->exampleFile());
       //m_t << "\\par" << endl; 
diff --git a/src/scanner.l b/src/scanner.l
index d211301..63bfde0 100644
--- a/src/scanner.l
+++ b/src/scanner.l
@@ -69,6 +69,7 @@ static int              lastPreLineCtrlContext;
 static int              lastSkipVerbStringContext;
 static int              lastCommentInArgContext;
 static int              lastCSConstraint;
+static int              lastHereDocContext;
 static Protection	protection;
 static Protection	baseProt;
 static int		sharpCount   = 0 ;
@@ -138,6 +139,7 @@ static QCString         *pCopyCurlyString;
 static QGString         *pCopyCurlyGString;
 static QGString         *pCopyRoundGString;
 static QGString         *pCopyQuotedGString;
+static QGString         *pCopyHereDocGString;
 static QGString         *pSkipVerbString;
 static QStack<Grouping> autoGroupStack;
 
@@ -698,6 +700,8 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 %x	CopyArgVerbatim
 %x	HereDoc
 %x	HereDocEnd
+%x	CopyHereDoc
+%x	CopyHereDocEnd
 
 %x      IDLAttribute
 %x      IDLProp
@@ -1833,13 +1837,14 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 					  else
 					    BEGIN( EndTemplate );
   					}
-<EndTemplate>"<<<"			{
+<EndTemplate>"<<<"	                {
   					  if (!insidePHP) 
 					  {
 					    REJECT;
 					  }
 					  else
 					  {
+                                            lastHereDocContext = YY_START;
 					    BEGIN(HereDoc);
 					  }
   					}
@@ -1922,20 +1927,44 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 					  else
 					    REJECT;
 					}
+<CopyHereDoc>{ID}                       { // PHP heredoc
+  					  g_hereDocId = yytext;
+                                          *pCopyHereDocGString += yytext;
+					  BEGIN(CopyHereDocEnd);
+                                        }
+<CopyHereDoc>"'"{ID}/"'"		{ // PHP nowdoc
+  					  g_hereDocId = &yytext[1];
+                                          *pCopyHereDocGString += yytext;
+					  BEGIN(CopyHereDocEnd);
+                                        }
 <HereDoc>{ID}				{ // PHP heredoc
   					  g_hereDocId = yytext;
 					  BEGIN(HereDocEnd);
   					}
 <HereDoc>"'"{ID}/"'"			{ // PHP nowdoc
   					  g_hereDocId = &yytext[1];
+					  BEGIN(HereDocEnd);
   					}
 <HereDocEnd>^{ID}			{ // id at start of the line could mark the end of the block
   					  if (g_hereDocId==yytext) // it is the end marker
 					  {
-  					    BEGIN(FindMembers);
+  					    BEGIN(lastHereDocContext);
 					  }
   					}
 <HereDocEnd>.				{ }
+<CopyHereDocEnd>^{ID}			{ // id at start of the line could mark the end of the block
+                                          *pCopyHereDocGString += yytext;
+  					  if (g_hereDocId==yytext) // it is the end marker
+					  {
+  					    BEGIN(lastHereDocContext);
+					  }
+  					}
+<CopyHereDocEnd>\n			{ 
+                                          *pCopyHereDocGString += yytext;
+                                        }
+<CopyHereDocEnd>.			{ 
+                                          *pCopyHereDocGString += yytext;
+                                        }
 <FindMembers>"Q_OBJECT"			{ // Qt object macro
   					}
 <FindMembers>"Q_PROPERTY"		{ // Qt property declaration
@@ -3130,7 +3159,7 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
   /*
 <FindFieldArg>","			{ unput(*yytext); BEGIN(FindFields); }
   */
-<ReadBody,ReadNSBody,ReadBodyIntf>[^\r\n\#{}"@'/]*	{ current->program += yytext ; }
+<ReadBody,ReadNSBody,ReadBodyIntf>[^\r\n\#{}"@'/<]*	{ current->program += yytext ; }
 <ReadBody,ReadNSBody,ReadBodyIntf>"//".*		{ current->program += yytext ; }
 <ReadBody,ReadNSBody,ReadBodyIntf>"#".*	{ if (!insidePHP) 
 					    REJECT;
@@ -3142,6 +3171,18 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
                                           lastSkipVerbStringContext=YY_START;
                                           BEGIN( SkipVerbString );
 					}
+<ReadBody,ReadNSBody,ReadBodyIntf>"<<<"	{ if (insidePHP)
+                                          {
+                                            current->program += yytext ; 
+                                            pCopyHereDocGString = &current->program;
+                                            lastHereDocContext=YY_START;
+                                            BEGIN( CopyHereDoc );
+                                          }
+                                          else
+                                          {
+                                            REJECT;
+                                          }
+					}
 <ReadBody,ReadNSBody,ReadBodyIntf>\"	{ current->program += yytext ; 
                                           pCopyQuotedGString = &current->program;
                                           lastStringContext=YY_START;
@@ -4470,7 +4511,18 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
   					  yyLineNr++;
   				          //addToBody(yytext);
   					}
-<SkipCurly,SkipCurlyCpp>[^\n#"'@\\/{}]+	{
+<SkipCurly,SkipCurlyCpp>"<<<"	        {
+  					  if (!insidePHP) 
+					  {
+					    REJECT;
+					  }
+					  else
+					  {
+                                            lastHereDocContext = YY_START;
+					    BEGIN(HereDoc);
+					  }
+  					}
+<SkipCurly,SkipCurlyCpp>[^\n#"'@\\/{}<]+ {
   				          //addToBody(yytext);
   					}
 <SkipCurlyCpp>\n			{ 
diff --git a/src/section.h b/src/section.h
index c4c9517..78516ae 100644
--- a/src/section.h
+++ b/src/section.h
@@ -28,13 +28,17 @@ class Definition;
 
 struct SectionInfo
 {
-  enum SectionType { Page, Section, Subsection, 
-                     Subsubsection, Paragraph, Anchor 
+  enum SectionType { Page          = 0, 
+                     Section       = 1, 
+                     Subsection    = 2, 
+                     Subsubsection = 3, 
+                     Paragraph     = 4, 
+                     Anchor        = 5 
                    };
   SectionInfo(const char *f,const char *l,const char *t,
-              SectionType st,const char *r=0) :
+              SectionType st,int lev,const char *r=0) :
     label(l), title(t), type(st), ref(r), definition(0), 
-    fileName(f), generated(FALSE)
+    fileName(f), generated(FALSE), level(lev)
   { 
   }
   SectionInfo(const SectionInfo &s)
@@ -51,12 +55,13 @@ struct SectionInfo
   Definition *definition;
   QCString fileName;
   bool generated;
+  int level;
 };
 
-class SectionDict : public QDict<SectionInfo>
+class SectionDict : public SDict<SectionInfo>
 {
   public:
-    SectionDict(int size) : QDict<SectionInfo>(size) {}
+    SectionDict(int size) : SDict<SectionInfo>(size) {}
    ~SectionDict() {}
 };
 
diff --git a/src/tagreader.cpp b/src/tagreader.cpp
index b7a7b7a..36119e2 100644
--- a/src/tagreader.cpp
+++ b/src/tagreader.cpp
@@ -1035,8 +1035,8 @@ void TagFileParser::addDocAnchors(Entry *e,const TagAnchorInfoList &l)
       //printf("New sectionInfo file=%s anchor=%s\n",
       //    ta->fileName.data(),ta->label.data());
       SectionInfo *si=new SectionInfo(ta->fileName,ta->label,ta->label,
-          SectionInfo::Anchor,m_tagName);
-      Doxygen::sectionDict.insert(ta->label,si);
+          SectionInfo::Anchor,0,m_tagName);
+      Doxygen::sectionDict.append(ta->label,si);
       e->anchors->append(si);
     }
     else
diff --git a/src/util.cpp b/src/util.cpp
index 6addbc7..3859c97 100644
--- a/src/util.cpp
+++ b/src/util.cpp
@@ -5908,13 +5908,13 @@ PageDef *addRelatedPage(const char *name,const QCString &ptitle,
         file=pd->getOutputFileBase();
       }
       SectionInfo *si=new SectionInfo(
-          file,pd->name(),pd->title(),SectionInfo::Page,pd->getReference());
+          file,pd->name(),pd->title(),SectionInfo::Page,0,pd->getReference());
       //printf("si->label=`%s' si->definition=%s si->fileName=`%s'\n",
       //      si->label.data(),si->definition?si->definition->name().data():"<none>",
       //      si->fileName.data());
       //printf("  SectionInfo: sec=%p sec->fileName=%s\n",si,si->fileName.data());
       //printf("Adding section key=%s si->fileName=%s\n",pageName.data(),si->fileName.data());
-      Doxygen::sectionDict.insert(pd->name(),si);
+      Doxygen::sectionDict.append(pd->name(),si);
     }
   }
   return pd;
@@ -6303,6 +6303,7 @@ bool updateLanguageMapping(const QCString &extension,const QCString &language)
 void initDefaultExtensionMapping()
 {
   g_extLookup.setAutoDelete(TRUE);
+  //                  extension      parser id
   updateLanguageMapping(".idl",      "idl"); 
   updateLanguageMapping(".ddl",      "idl"); 
   updateLanguageMapping(".odl",      "idl"); 
@@ -7166,20 +7167,21 @@ QCString langToString(SrcLangExt lang)
 {
   switch(lang)
   {
-    case SrcLangExt_Unknown: return "Unknown";
-    case SrcLangExt_IDL:     return "IDL";
-    case SrcLangExt_Java:    return "Java";
-    case SrcLangExt_CSharp:  return "C#";
-    case SrcLangExt_D:       return "D";
-    case SrcLangExt_PHP:     return "PHP";
-    case SrcLangExt_ObjC:    return "Objective-C";
-    case SrcLangExt_Cpp:     return "C++";
-    case SrcLangExt_JS:      return "Javascript";
-    case SrcLangExt_Python:  return "Python";
-    case SrcLangExt_Fortran: return "Fortran";
-    case SrcLangExt_VHDL:    return "VHDL";
-    case SrcLangExt_XML:     return "XML";
-    case SrcLangExt_Tcl:     return "Tcl";
+    case SrcLangExt_Unknown:  return "Unknown";
+    case SrcLangExt_IDL:      return "IDL";
+    case SrcLangExt_Java:     return "Java";
+    case SrcLangExt_CSharp:   return "C#";
+    case SrcLangExt_D:        return "D";
+    case SrcLangExt_PHP:      return "PHP";
+    case SrcLangExt_ObjC:     return "Objective-C";
+    case SrcLangExt_Cpp:      return "C++";
+    case SrcLangExt_JS:       return "Javascript";
+    case SrcLangExt_Python:   return "Python";
+    case SrcLangExt_Fortran:  return "Fortran";
+    case SrcLangExt_VHDL:     return "VHDL";
+    case SrcLangExt_XML:      return "XML";
+    case SrcLangExt_Tcl:      return "Tcl";
+    case SrcLangExt_Markdown: return "Markdown";
   }
   return "Unknown";
 }