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When having the example:
```
/*! \file
* \brief
* Prerequisite header file
*/
//! \cond
#ifdef HAVE_CONFIG_H
#include "gmxpre-config.h"
#endif
//! \endcond
```
and we run xmllint on it:
```
xmllint --path .../testing/dtd --noout --nonet --postvalid html/*.html
```
we get the messages:
```
html/aa_8h_source.html:75: parser error : Opening and ending tag mismatch: div line 67 and body
</body>
^
html/aa_8h_source.html:76: parser error : Opening and ending tag mismatch: body line 17 and html
</html>
^
html/aa_8h_source.html:77: parser error : Premature end of data in tag html line 2
^
```
It looks like the problematic part in this case is the doxygen type comment at the end of the file.
In the past similar situations were present in LaTeX (related to maximum line length correction), but it was only fixed for LaTeX.
Besides the change for HTML also small changes were necessary for RTF and docbook.
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The title of an image needs to be at a specific place in docbook. The current place was incorrect
(based on https://stackoverflow.com/questions/53448764/doxygen-creates-empty-image-titles-for-docbook-output)
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The docbook generator has been replaced by a new implementation. The old implementation was still present, removed now (disrupts easy updates due to false positive searches in the code).
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Added a Slice-optimized output mode.
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- corrected some initializations
- corrected some missing, new, cases (reported by travis CI)
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Removed debug statement
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Till now docbook had its own output generator, but lot of possibilities were missing (see remark about updating below), with this patch the (more than) basic implementation has been made.
Added some docbook tests to the current tests and updated documentation where necessary
Tried updating current version but too many issues remained that were generically handled in the standard generator, code is in current version behind '#if 0' construct in doxygen.cpp and name with '_v1' and in docbookgen.cp'
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improve performance
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Remove unused local and static global variables. Variables have been identified by Understand (version 758) from Scitools.
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1. support other than english
2. fix broken example link id
3. fix incomplete TOC : no Classe etc.
4. add brief description for Functions etc.
5. Comply with REPEAT_BRIEF
6. Do not output duplicated contents when detailed descripton is missing.
7. set table colwidth for Param/RetVal
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1. New Feature: Adapted Class Graph generation for DOCBOOK
2. Fixed DOCBOOK Code documentation formatting
3. Fixed Doxygen to handle FULL_PATH_NAMES for DOCBOOK generation
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Windows systems use the same information (consistency). Some use names routine names have been changed (from .l files with -P option) to reflect the file name that generated the routines, this makes it easier to create a general procedure.
A number of include / header files are files are generated from different file types (html, xml, js), due some limitations of the windows build system the generated file names had to be changed (the extension in the windows build system is only available including the '.' so e.g. the file jquery_fx.js generates now jquery_fx.js.h instead of jquery_fx_js.h)
In the windows version the creation of .cpp files from .l files has been adjusted to correct for the YY_BUF_SIZE problems.
Furthermore on windows (and also used on *nix) some commends have been replaced with python scripts so that on windows only python is need (besides flex and and bison). On *nix also perl is required for the generation using tmake.
Below a short description of the changes will be given and grouped.
Changed files
=============
- .gitignore
added some directories and file
- Doxyfile
corrected for changed file names
- Makefile.in
added realclean and some other changes (ignore error) and the moment when the Makefile is deleted (as last file).
Added entries for doxyapp and doxmlparser
Added realclean for the following files (consistency):
======================================================
- Makefile.win_make.in
- Makefile.win_nmake.in
- addon/doxmlparser/examples/metrics/Makefile.in
- addon/doxmlparser/src/Makefile.in
- addon/doxmlparser/test/Makefile.in
- addon/doxyapp/Makefile.in
- addon/doxysearch/Makefile.in
- libmd5/Makefile.in
- qtools/Makefile.in
- addon/doxyapp/doxyapp.pro.in
removed double occurence of -L../../lib
- addon/doxysearch/doxysearch.pro.in
no visible change just spacing?
- addon/doxywizard/Makefile.in
added realclean
corrected call to qmake (to get it from the right place, it is not necessarily in the path)
made some macros known in the called process
- addon/doxywizard/configdoc.cpp
automatically generated, can be removed
- addon/doxywizard/doxywizard.pro.in
corrected dependencies
corrected call to python (to get it from the right place, it is not necessarily in the path)
new items to generate version.cpp and config_doxyw.cpp
- configure
added configuration definition possibility for python
added possibility to build doxmlparser
automatically generate the lang_cfg.h file based on the available languages (translator_??.h) and not on a fixed list. This step still has to be added to the windows build process.
- doc/Makefile.in
corrected call to python (to get it from the right place, it is not necessarily in the path)
- doc/config.doc
small correction
- doc/install.doc
added python as a requirement
changed CVS to GitHub
- doc/language.doc
automatically generated file, based on other changes.
- doc/language.tpl
made XX and xx more consistent
changed description of the procedure based on changes already made configure.
- src/Makefile.in
adjusted used file names in distclean
Solved PERL usage consistent with LEX / YACC (with %%PERL%%)
automatically add translator_??>h to HEADERS
same spacing
Adjusted in the following file the names of some include files:
===============================================================
- src/cite.cpp
- src/docbookgen.cpp
- src/ftvhelp.cpp
- src/htmlgen.cpp
- src/layout.cpp
- src/searchindex.cpp
- src/xmlgen.cpp
Adjusted in the following files some routine names (..YY..) to be consistent with the file names:
=================================================================================================
- src/commentscan.l
- src/constexp.h
- src/constexp.l
- src/constexp.y
- src/fortrancode.l
- src/fortranscanner.l
- src/pyscanner.l
- src/pre.l
- src/scanner.l
- src/tclscanner.l
- src/vhdlparser.y
- src/vhdlscanner.l
- src/config.xml
small textual correction
- src/configoptions.cpp
generated output file, can be removed
- src/lang_cfg.h
Automatically generated file with selected languages (*nix). On windows a procedure has to be defined.
- src/libdoxycfg.t.in
corrected call to python (to get it from the right place, it is not necessarily in the path)
- src/libdoxygen.pro.in
adjusted include file names
removed translator_??.h files, they are added automatically
changed file name ce_lex.cpp -> constexp.cpp (generated file)
- src/libdoxygen.t.in
made LEX calls used the file name for the -P option
changed INCREASEBUF script to a python script
changed teh geneartion of some include file, now by means of a pythons script. Names of the generated include file had to be changed as well.
added possibility to generate version.cpp here as well.
Added HEADERS to dependency so non existing but later generated include files are recognized as well:
=====================================================================================================
- tmake/lib/unix/generic.t
- tmake/lib/win32-borland/generic.t
- tmake/lib/win32-g++/generic.t
- tmake/lib/win32-mingw/generic.t
- tmake/lib/win32-msvc/generic.t
- tmake/lib/win32-symantec/generic.t
- tmake/lib/win32-visage/generic.t
- tmake/lib/win32-watcom/generic.t
- winbuild/Doxygen.vcproj
made consistent wit *nix version.
Generating all possible files
removed unused /empty parts
setting for the Lex.rules and other rules files some default values
- winbuild/Doxywizard.vcproj
made consistent wit *nix version.
Generating all possible files
removed unused /empty parts
removed system dependent paths (C:\... etc) replaced then with external environment variables
- winbuild/Lex.rules
adjusted file to comply with new requirements, only user variable is -d. -i is set to read only (value can be changed in doxygen.vcproj). Handling of other arguments is all default.
generation including increasebuffer possibility
- winbuild/doxyindexer.vcproj
corrected path
- winbuild/doxysearch.vcproj
removed system dependent paths (C:\... etc) replaced then with external environment variables
- winbuild/qtools.vcproj
corrected type, wrong used directory
The following files are automatically generated (with slightly other names like index.xsd.h etc.):
==================================================================================================
- src/index_xsd.h
- src/doxygen_bst.h
- src/dynsections_js.h
- src/extsearch_js.h
- src/footer_html.h
- src/header_html.h
- src/jquery_fx_js.h
- src/jquery_p1_js.h
- src/jquery_p2_js.h
- src/jquery_p3_js.h
- src/jquery_pt_js.h
- src/jquery_ui_js.h
- src/navtree_css.h
- src/navtree_js.h
- src/resize_js.h
- src/search_css.h
- src/search_functions_php.h
- src/search_js.h
- src/search_opensearch_php.h
- src/svgpan_js.h
the following files are generated with different names:
- src/bib2xhtml.h
becomes
- src/bib2xhtml.pl/h
- src/layout_default.h
becomes
- src/layout_default.xml.h
The file:
=========
- addon/doxywizard/config.l
is replaced by:
- addon/doxywizard/config_doxyw.l
so there are in the system not 2 different config.l files. Renamed some routines from configYY -> config_doxywYY...
New files:
==========
- src/increasebuffer.py
increase YY_BUF_SIZE and YY_READ_BUF_SIZE from 16k / 8k to 256k.
- src/settings.py
create settings.h file
- src/to_c_cmd.py
create include files from different files (html, xml, js) so they can be included in the code as defaults
- src/version.py
create version.cpp file based on the configure file
- winbuild/Config.rules
rules file to convert the config.xml file into configoptions.cpp (doxygen) or configdoc.cpp (doxywizard). Seen the differences 2 rules are created within this file.
- winbuild/Gen_head.rules
rules files to generate include files from different files using to_c_cmd.py
- winbuild/Settings.rules
rules file for generating the settings.h file. It is possible to select to use CLANG and SqlLite3
- winbuild/Version.rules
rules file to be able to start version.py
The files:
==========
- version.bat
- runbison.bat
- increasebuffer.pl
are not used anymore.
I've only added the files as indicated, I didn't remove the files from the repository.
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