// Copyright (C) 1999-2017 // Smithsonian Astrophysical Observatory, Cambridge, MA, USA // For conditions of distribution and use, see copyright notice in "copyright" #include "fitsdata.h" #include "sigbus.h" #ifdef INTERP #undef INTERP #endif #define INTERP interp_ // ZSCALE #define ZSMAX(a,b) ((a) > (b) ? (a) : (b)) #define ZSMIN(a,b) ((a) < (b) ? (a) : (b)) #define ZSMOD(a,b) ((a) % (b)) #define ZSNINT(a) ((int)(a + 0.5)) #define ZSINDEF 0 // smallest permissible sample #define ZSMIN_NPIXELS 5 // max frac. of pixels to be rejected #define ZSMAX_REJECT 0.5 // k-sigma pixel rejection factor #define ZSKREJ 2.5 // maximum number of fitline iterations #define ZSMAX_ITERATIONS 5 ostream& operator<<(ostream& ss, const FitsBound& fb) { ss << ' ' << fb.xmin << ' ' << fb.ymin << ' ' << fb.xmax << ' ' << fb.ymax; return ss; } // FitsData FitsData::FitsData(FitsFile* fits, Tcl_Interp* pp) { interp_ = pp; FitsImageHDU* hdu = (FitsImageHDU*)fits->head()->hdu(); width_ = hdu->naxis(0); height_ = hdu->naxis(1); buf_[0] = '\0'; byteswap_ = fits->byteswap(); bscale_ = hdu->bscale(); bzero_ = hdu->bzero(); blank_ = hdu->blank(); hasscaling_ = hdu->hasscaling(); switch (hdu->bitpix()) { case 8: case 16: case -16: case 32: case 64: hasblank_ = hdu->hasblank(); break; case -32: case -64: hasblank_ = 0; break; } min_ =0; max_ =0; low_ =0; high_ =0; zLow_ = zHigh_ = 0; aLow_ = aHigh_ = 0; ulow_ = uhigh_ = 0; scanValid_ = 0; minmaxSample_ = 25; zContrast_ = .5; zSample_ = 600; zLine_ = 5; zscaleValid_ = 0; autoCutValid_ = 0; autoCutPer_ = 0; clipMode_ = FrScale::MINMAX; minmaxMode_ = FrScale::SCAN; if (fits->find("DATAMIN") && fits->find("DATAMAX")) { hasdatamin_ = 1; datamin_ = fits->getReal("DATAMIN", 0); datamax_ = fits->getReal("DATAMAX", 0); } else { hasdatamin_ = 0; datamin_ = datamax_ = 0; } if (fits->find("IRAF-MIN") && fits->find("IRAF-MAX")) { hasirafmin_ = 1; irafmin_ = fits->getReal("IRAF-MIN", 0); irafmax_ = fits->getReal("IRAF-MAX", 0); } else { hasirafmin_ = 0; irafmin_ = irafmax_ = 0; } secMode_ = FrScale::IMGSEC; } FitsData::~FitsData() { } const char* FitsData::getLow() { ostringstream str; str << low_ << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getHigh() { ostringstream str; str << high_ << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } int FitsData::calcIncr() { switch (minmaxMode_) { case FrScale::SCAN: case FrScale::DATAMIN: case FrScale::IRAFMIN: return 1; case FrScale::SAMPLE: return minmaxSample_; } } // AutoCut #define AUTOCUTSIZE 10240 void FitsData::autoCut(FitsBound* params) { double amin = min(); double amax = max(); // bin it up double hst[AUTOCUTSIZE]; memset(hst,0,sizeof(double)*AUTOCUTSIZE); hist(hst, AUTOCUTSIZE, amin, amax, params); // find total number of pixels int total = 0; for (int ii=0; ii cutoff) break; } for (hh=AUTOCUTSIZE-1,count=0; hh>ll+1; hh--) { count += hst[hh]; if (count > cutoff) break; } aLow_ = (amax-amin)/AUTOCUTSIZE*ll + amin; aHigh_ = (amax-amin)/AUTOCUTSIZE*hh + amin; } const char* FitsData::getMin() { ostringstream str; switch (minmaxMode_) { case FrScale::SCAN: case FrScale::SAMPLE: str << min_ << ends; break; case FrScale::DATAMIN: if (hasdatamin_) str << datamin_ << ends; else str << ends; break; case FrScale::IRAFMIN: if (hasirafmin_) str << irafmin_ << ends; else str << ends; break; } memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getMinX() { ostringstream str; str << minXY_[0] << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getMinY() { ostringstream str; str << minXY_[1] << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getMax() { ostringstream str; switch (minmaxMode_) { case FrScale::SCAN: case FrScale::SAMPLE: str << max_ << ends; break; case FrScale::DATAMIN: if (hasdatamin_) str << datamax_ << ends; else str << ends; break; case FrScale::IRAFMIN: if (hasirafmin_) str << irafmax_ << ends; else str << ends; break; } memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getMaxX() { ostringstream str; str << maxXY_[0] << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } const char* FitsData::getMaxY() { ostringstream str; str << maxXY_[1] << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } double FitsData::min() { switch (minmaxMode_) { case FrScale::SCAN: case FrScale::SAMPLE: return min_; case FrScale::DATAMIN: if (hasdatamin_) return datamin_; else return 0; case FrScale::IRAFMIN: if (hasirafmin_) return irafmin_; else return 0; } } double FitsData::max() { switch (minmaxMode_) { case FrScale::SCAN: case FrScale::SAMPLE: return max_; case FrScale::DATAMIN: if (hasdatamin_) return datamax_; else return 0; case FrScale::IRAFMIN: if (hasirafmin_) return irafmax_; return 0; } } // FitsDatam template FitsDatam::FitsDatam(FitsFile* fits, Tcl_Interp* pp) : FitsData(fits, pp) { data_ = (T*)fits->data(); } // swap (optimized) template <> unsigned char FitsDatam::swap(unsigned char* ptr) { return *ptr; } template <> short FitsDatam::swap(short* ptr) { const char* p = (const char*)ptr; union { char c[2]; short s; } u; u.c[1] = *p++; u.c[0] = *p; return u.s; } template <> unsigned short FitsDatam::swap(unsigned short* ptr) { const char* p = (const char*)ptr; union { char c[2]; unsigned short s; } u; u.c[1] = *p++; u.c[0] = *p; return u.s; } template <> int FitsDatam::swap(int* ptr) { const char* p = (const char*)ptr; union { char c[4]; int i; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; return u.i; } template <> long long FitsDatam::swap(long long* ptr) { const char* p = (const char*)ptr; union { char c[8]; long long i; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; return u.i; } template <> float FitsDatam::swap(float* ptr) { const char* p = (const char*)ptr; union { char c[4]; float f; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; return u.f; } template <> double FitsDatam::swap(double* ptr) { const char* p = (const char*)ptr; union { char c[8]; double d; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; return u.d; } // Private/Protected // output template void FitsDatam::output(ostringstream& str, T value) { str << value << ends; } template <> void FitsDatam::output(ostringstream& str, unsigned char value) { str << (unsigned short)value << ends; } template <> void FitsDatam::output(ostringstream& str, unsigned short value) { str << (unsigned short)value << ends; } // scan (optimized) template <> void FitsDatam::scan(FitsBound* params) { min_ = UCHAR_MAX; max_ = 0; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { unsigned char* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register unsigned char value = *ptr; if (hasblank_ && value == blank_) continue; // skip nan's if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } CLEARSIGBUS // sanity check if (min_ == UCHAR_MAX && max_ == 0) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = SHRT_MAX; max_ = SHRT_MIN; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { short* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register short value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[2]; short s; } u; u.c[1] = *p++; u.c[0] = *p; value = u.s; } if (hasblank_ && value == blank_) continue; // skip nan's if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } CLEARSIGBUS // sanity check if (min_ == SHRT_MAX && max_ == SHRT_MIN) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = USHRT_MAX; max_ = 0; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { unsigned short* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register unsigned short value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[2]; unsigned short s; } u; u.c[1] = *p++; u.c[0] = *p; value = u.s; } if (hasblank_ && value == blank_) continue; // skip nan's if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } CLEARSIGBUS // sanity check if (min_ == USHRT_MAX && max_ == 0) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = INT_MAX; max_ = INT_MIN; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { int* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register int value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[4]; int i; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; value = u.i; } if (hasblank_ && value == blank_) continue; // skip nan's if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } CLEARSIGBUS // sanity check if (min_ == INT_MAX && max_ == INT_MIN) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = LLONG_MAX; max_ = LLONG_MIN; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { long long* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register long long value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[8]; long long i; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; value = u.i; } if (hasblank_ && value == blank_) continue; // skip nan's if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } CLEARSIGBUS // sanity check if (min_ == LLONG_MAX && max_ == LLONG_MIN) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = FLT_MAX; max_ = -FLT_MAX; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { float* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register float value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[4]; float f; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; value = u.f; } if (isfinite(value)) { if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } } CLEARSIGBUS // sanity check if (min_ == FLT_MAX && max_ == -FLT_MAX) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } template <> void FitsDatam::scan(FitsBound* params) { min_ = DBL_MAX; max_ = -DBL_MAX; minXY_.origin(); maxXY_.origin(); int kk =calcIncr(); if (DebugPerf) cerr << "FitsDatam::scan()..." << " sample=" << minmaxSample_ << " (" << params->xmin << ',' << params->ymin << ") to (" << params->xmax << ',' << params->ymax << ") "; SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { double* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register double value; if (!byteswap_) value = *ptr; else { const char* p = (const char*)ptr; union { char c[8]; double d; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; value = u.d; } if (isfinite(value)) { if (value < min_) { min_ = value; minXY_ = Vector(ii+1, jj+1); } if (value > max_) { max_ = value; maxXY_ = Vector(ii+1, jj+1); } } } } CLEARSIGBUS // sanity check if (min_ == DBL_MAX && max_ == -DBL_MAX) { min_ =NAN; max_ =NAN; minXY_.origin(); maxXY_.origin(); } else { if (hasscaling_) { min_ = min_*bscale_ + bzero_; max_ = max_*bscale_ + bzero_; } } if (DebugPerf) { cerr << "end" << endl; cerr << "min: " << min_ << " max: " << max_ << endl; } } // Public // updateClip template void FitsDatam::updateClip(FrScale* fr, FitsBound* params) { if (DebugPerf) cerr << "FitsDatam::updateClip()" << endl; clipMode_ = fr->clipMode(); ulow_ = fr->ulow(); uhigh_ = fr->uhigh(); // DATASEC if (secMode_ != fr->secMode()) { scanValid_ = 0; zscaleValid_ = 0; autoCutValid_ = 0; } secMode_ = fr->secMode(); // MINMAX if (minmaxMode_ != fr->minmaxMode() || minmaxSample_ != fr->minmaxSample()) scanValid_ = 0; minmaxMode_ = fr->minmaxMode(); minmaxSample_ = fr->minmaxSample(); // ZSCALE if (zContrast_ != fr->zContrast() || zSample_ != fr->zSample() || zLine_ != fr->zLine()) zscaleValid_ = 0; zContrast_ = fr->zContrast(); zSample_ = fr->zSample(); zLine_ = fr->zLine(); // AUTOCUT if (minmaxMode_ != fr->minmaxMode() || autoCutPer_ != fr->autoCutPer()) autoCutValid_ = 0; autoCutPer_ = fr->autoCutPer(); // always update min/max because everyone needs it if (!scanValid_) { scan(params); scanValid_ = 1; } switch (clipMode_) { case FrScale::MINMAX: low_ = min(); high_ = max(); break; case FrScale::ZSCALE: if (!zscaleValid_) { zscale(params); zscaleValid_ = 1; } low_ = zLow_; high_ = zHigh_; break; case FrScale::ZMAX: // set low via zscale, high via minmax if (!zscaleValid_) { zscale(params); zscaleValid_ = 1; } low_ = zLow_; high_ = max(); break; case FrScale::AUTOCUT: if (!autoCutValid_) { autoCut(params); autoCutValid_ = 1; } low_ = aLow_; high_ = aHigh_; break; case FrScale::USERCLIP: low_ = ulow_; high_ = uhigh_; break; } } // getValue template const char* FitsDatam::getValue(const Vector& vv) { Vector v(vv); long x = (long)v[0]; long y = (long)v[1]; ostringstream str; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register T value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (hasblank_ && value == blank_) str << "blank" << ends; else if (hasscaling_) str << value * bscale_ + bzero_ << ends; else output(str, value); } else str << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } template <> const char* FitsDatam::getValue(const Vector& vv) { Vector v(vv); long x = (long)v[0]; long y = (long)v[1]; ostringstream str; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register float value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isinf(value)) str << "inf" << ends; else if (isnan(value)) str << "nan" << ends; else if (hasscaling_) str << value * bscale_ + bzero_ << ends; else str << value << ends; } else str << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } template <> const char* FitsDatam::getValue(const Vector& vv) { Vector v(vv); long x = (long)v[0]; long y = (long)v[1]; ostringstream str; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register double value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isinf(value)) str << "inf" << ends; else if (isnan(value)) str << "nan" << ends; else if (hasscaling_) str << value * bscale_ + bzero_ << ends; else str << value << ends; } else str << ends; memcpy(buf_,str.str().c_str(),str.str().length()); return buf_; } // getValueFloat(long) (optimized) // no bounds checking, we need the speed template <> float FitsDatam::getValueFloat(long i) { if (!hasblank_ && !hasscaling_) return data_[i]; if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[2]; short s; } u; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.s; if (hasblank_ && u.s == blank_) return NAN; else return hasscaling_ ? u.s * bscale_ + bzero_ : u.s; } } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[2]; unsigned short s; } u; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.s; if (hasblank_ && u.s == blank_) return NAN; else return hasscaling_ ? u.s * bscale_ + bzero_ : u.s; } } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[4]; int i; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.i; if (hasblank_ && u.i == blank_) return NAN; else return hasscaling_ ? u.i * bscale_ + bzero_ : u.i; } } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[8]; long long i; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.i; if (hasblank_ && u.i == blank_) return NAN; else return hasscaling_ ? u.i * bscale_ + bzero_ : u.i; } } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_) if (isfinite(data_[i])) return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; else return NAN; else { const char* p = (const char*)(data_+i); union { char c[4]; float f; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (isfinite(u.f)) return hasscaling_ ? u.f * bscale_ + bzero_ : u.f; else return NAN; } } template <> float FitsDatam::getValueFloat(long i) { if (!byteswap_) if (isfinite(data_[i])) return hasscaling_ ? (float)data_[i] * bscale_ + bzero_ : (float)data_[i]; else return NAN; else { const char* p = (const char*)(data_+i); union { char c[8]; double d; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (isfinite(u.d)) return hasscaling_ ? (float)u.d * bscale_ + bzero_ : (float)u.d; else return NAN; } } // getValueFloat(const Vector&) template float FitsDatam::getValueFloat(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register T value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (hasblank_ && value == blank_) return NAN; return hasscaling_ ? value * bscale_ + bzero_ : value; } else return NAN; } template <> float FitsDatam::getValueFloat(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register float value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isfinite(value)) return hasscaling_ ? value * bscale_ + bzero_ : value; else return NAN; } else return NAN; } template <> float FitsDatam::getValueFloat(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register double value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isfinite(value)) return hasscaling_ ? (float)value * bscale_ + bzero_ : (float)value; else return NAN; } else return NAN; } // getValueDouble(long) (optimized) // no bounds checking, we need the speed template <> double FitsDatam::getValueDouble(long i) { if (!hasblank_ && !hasscaling_) return data_[i]; if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[2]; short s; } u; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.s; if (hasblank_ && u.s == blank_) return NAN; else return hasscaling_ ? u.s * bscale_ + bzero_ : u.s; } } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[2]; unsigned short s; } u; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.s; if (hasblank_ && u.s == blank_) return NAN; else return hasscaling_ ? u.s * bscale_ + bzero_ : u.s; } } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[4]; int i; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.i; if (hasblank_ && u.i == blank_) return NAN; else return hasscaling_ ? u.i * bscale_ + bzero_ : u.i; } } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasblank_ && !hasscaling_) return data_[i]; if (!byteswap_) { if (hasblank_ && data_[i] == blank_) return NAN; else return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; } else { const char* p = (const char*)(data_+i); union { char c[8]; long long i; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (!hasblank_ && !hasscaling_) return u.i; if (hasblank_ && u.i == blank_) return NAN; else return hasscaling_ ? u.i * bscale_ + bzero_ : u.i; } } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasscaling_) return (double)data_[i]; if (!byteswap_) { if (isfinite(data_[i])) return hasscaling_ ? (double)data_[i] * bscale_ + bzero_ : (double)data_[i]; else return NAN; } else { const char* p = (const char*)(data_+i); union { char c[4]; float f; } u; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (isfinite(u.f)) return hasscaling_ ? (double)u.f * bscale_ + bzero_ : (double)u.f; else return NAN; } } template <> double FitsDatam::getValueDouble(long i) { if (!byteswap_ && !hasscaling_) return (double)data_[i]; if (!byteswap_) { if (isfinite(data_[i])) return hasscaling_ ? data_[i] * bscale_ + bzero_ : data_[i]; else return NAN; } else { const char* p = (const char*)(data_+i); union { char c[8]; double d; } u; u.c[7] = *p++; u.c[6] = *p++; u.c[5] = *p++; u.c[4] = *p++; u.c[3] = *p++; u.c[2] = *p++; u.c[1] = *p++; u.c[0] = *p; if (isfinite(u.d)) return hasscaling_ ? u.d * bscale_ + bzero_ : u.d; else return NAN; } } // getValueDouble(const Vector&) template double FitsDatam::getValueDouble(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register T value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (hasblank_ && value == blank_) return NAN; return hasscaling_ ? value * bscale_ + bzero_ : value; } else return NAN; } template <> double FitsDatam::getValueDouble(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register float value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isfinite(value)) return hasscaling_ ? (double)value * bscale_ + bzero_ : (double)value; else return NAN; } else return NAN; } template <> double FitsDatam::getValueDouble(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) { register double value = !byteswap_ ? data_[y*width_ + x] : swap(data_+(y*width_ + x)); if (isfinite(value)) return hasscaling_ ? value * bscale_ + bzero_ : value; else return NAN; } else return NAN; } // getValueMask template int FitsDatam::getValueMask(const Vector& v) { Vector r = v; long x = (long)r[0]; long y = (long)r[1]; if (x >= 0 && x < width_ && y >= 0 && y < height_) return data_[y*width_ + x] ? 1 : 0; else return 0; } template int FitsDatam::getValueMask(double xx, double yy) { long x = (long)xx; long y = (long)yy; if (x >= 0 && x < width_ && y >= 0 && y < height_) return data_[y*width_ + x] ? 1 : 0; else return 0; } template int FitsDatam::getValueMask(long i) { return data_[i] ? 1 : 0; } // bin template void FitsDatam::hist(double* arr, int length, double mn, double mx, FitsBound* params) { if (DebugPerf) cerr << "FitsDatam::hist()" << endl; double diff = mx-mn; int last = length-1; int kk =calcIncr(); // special case: mx-mn=0 if (!diff) { arr[0] = (params->xmax-params->xmin)*(params->ymax-params->ymin); return; } SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { T* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register double value = !byteswap_ ? *ptr : swap(ptr); if (hasblank_ && value == blank_) continue; // skip nan's if (hasscaling_) value = value * bscale_ + bzero_; if (value>=mn && value <=mx) arr[(int)((value-mn)/diff*last+.5)]++; } } CLEARSIGBUS } template <> void FitsDatam::hist(double* arr, int length, double mn, double mx, FitsBound* params) { if (DebugPerf) cerr << "FitsDatam::hist()" << endl; double diff = mx-mn; // the last location is always 0 int last = length-2; int kk =calcIncr(); // special case: mx-mn=0 if (!diff) { arr[0] = (params->xmax-params->xmin)*(params->ymax-params->ymin); return; } SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { float* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register double value = !byteswap_ ? *ptr : swap(ptr); if (!isfinite(value)) continue; // skip nan's if (hasscaling_) value = value * bscale_ + bzero_; if (value>=mn && value<=mx) arr[(int)((value-mn)/diff*last+.5)]++; } } CLEARSIGBUS } template <> void FitsDatam::hist(double* arr, int length, double mn, double mx, FitsBound* params) { if (DebugPerf) cerr << "FitsDatam::hist()" << endl; double diff = mx-mn; int last = length-1; int kk =calcIncr(); // special case: mx-mn=0 if (!diff) { arr[0] = (params->xmax-params->xmin)*(params->ymax-params->ymin); return; } SETSIGBUS for (int jj=params->ymin; jjymax; jj+=kk) { double* ptr = data_ + jj*long(width_) + long(params->xmin); for (int ii=params->xmin; iixmax; ii+=kk, ptr+=kk) { register double value = !byteswap_ ? *ptr : swap(ptr); if (!isfinite(value)) continue; // skip nan's if (hasscaling_) value = value * bscale_ + bzero_; if (value>=mn && value <=mx) arr[(int)((value-mn)/diff*last+.5)]++; } } CLEARSIGBUS } // ZSCALE // ZSCALE -- Compute the optimal Z1, Z2 (range of greyscale values to be // displayed) of an image. For efficiency a statistical subsample of an image // is used. The pixel sample evenly subsamples the image in x and y. The // entire image is used if the number of pixels in the image is smaller than // the desired sample. // // The sample is accumulated in a buffer and sorted by greyscale value. // The median value is the central value of the sorted array. The slope of a // straight line fitted to the sorted sample is a measure of the standard // deviation of the sample about the median value. Our algorithm is to sort // the sample and perform an iterative fit of a straight line to the sample, // using pixel rejection to omit gross deviants near the endpoints. The fitted // straight line is the transfer function used to map image Z into display Z. // If more than half the pixels are rejected the full range is used. The slope // of the fitted line is divided by the user-supplied contrast factor and the // final Z1 and Z2 are computed, taking the origin of the fitted line at the // median value. template void FitsDatam::zscale(FitsBound* params) { // Subsample the image float* sample; int npix = zSampleImage(&sample,params); int center_pixel = ZSMAX(1, (npix + 1) / 2); // Sort the sample, compute the minimum, maximum, and median pixel values qsort((void*)sample, npix, sizeof(float), fCompare); float zmin = *sample; float zmax = *(sample+ZSMAX(npix,1)-1); // The median value is the average of the two central values if there // are an even number of pixels in the sample. float* left = &(sample[center_pixel - 1]); float median; if (ZSMOD(npix, 2) == 1 || center_pixel >= npix) median = *left; else median = (*left + *(left+1)) / 2; // Fit a line to the sorted sample vector. If more than half of the // pixels in the sample are rejected give up and return the full range. // If the user-supplied contrast factor is not 1.0 adjust the scale // accordingly and compute zLow and zHigh, the y intercepts at indices 1 and // npix. int minpix = ZSMAX(ZSMIN_NPIXELS, (int)(npix * ZSMAX_REJECT)); int ngrow = ZSMAX(1, ZSNINT(npix * .01)); float zstart, zslope; int ngoodpix = zFitLine(sample, npix, &zstart, &zslope, ZSKREJ, ngrow, ZSMAX_ITERATIONS); if (ngoodpix < minpix) { zLow_ = zmin; zHigh_ = zmax; } else { if (zContrast_ > 0) zslope = zslope / zContrast_; zLow_ = ZSMAX(zmin, median - (center_pixel - 1) * zslope); zHigh_ = ZSMIN(zmax, median + (npix - center_pixel) * zslope); } delete [] sample; } // sampleImage -- Extract an evenly gridded subsample of the pixels from // a two-dimensional image into a one-dimensional vector. template int FitsDatam::zSampleImage(float** sample, FitsBound* params) { // Compute the number of pixels each line will contribute to the sample, // and the subsampling step size for a line. The sampling grid must // span the whole line on a uniform grid. int wd = params->xmax - params->xmin; int opt_npix_per_line = ZSMAX(1, ZSMIN(wd, zLine_)); int col_step = ZSMAX(2, (wd + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (wd + col_step-1) / col_step); /* int opt_npix_per_line = ZSMAX(1, ZSMIN(width, zLine)); int col_step = ZSMAX(2, (width + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (width + col_step-1) / col_step); */ // Compute the number of lines to sample and the spacing between lines. // We must ensure that the image is adequately sampled despite its // size, hence there is a lower limit on the number of lines in the // sample. We also want to minimize the number of lines accessed when // accessing a large image, because each disk seek and read is ex- // pensive. The number of lines extracted will be roughly the sample // size divided by zLine, possibly more if the lines are very // short. int hd = params->ymax-params->ymin; int min_nlines_in_sample = ZSMAX(1, zSample_ / zLine_); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(hd, (zSample_ + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, hd / opt_nlines_in_sample); int max_nlines_in_sample = (hd + line_step-1) / line_step; /* int min_nlines_in_sample = ZSMAX(1, zSample / zLine); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(height, (zSample + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, height / opt_nlines_in_sample); int max_nlines_in_sample = (height + line_step-1) / line_step; */ // Allocate space for the output vector. Buffer must be freed by our caller. int maxpix = npix_per_line * max_nlines_in_sample; *sample = new float[maxpix]; // float* row = new float[width]; float* row = new float[wd]; // Extract the vector int npix = 0; float* op = *sample; // for (int line = (line_step + 1)/2; line < height; line+=line_step) { for (int line = (line_step + 1)/2 + params->ymin; line < params->ymax; line+=line_step) { // Load a row of values from the image // for (int i=0; i < width; i++) { for (int i=0; ixmin); T value = !byteswap_ ? *ptr : swap(ptr); if (hasblank_ && (value == blank_)) row[i] = NAN; else row[i] = hasscaling_ ? value * bscale_ + bzero_ : value; } int got = zSubSample(row, op, npix_per_line, col_step); op += got; npix += got; if (npix >= maxpix) break; } delete [] row; return npix; } template <> int FitsDatam::zSampleImage(float** sample, FitsBound* params) { // Compute the number of pixels each line will contribute to the sample, // and the subsampling step size for a line. The sampling grid must // span the whole line on a uniform grid. int wd = params->xmax - params->xmin; int opt_npix_per_line = ZSMAX(1, ZSMIN(wd, zLine_)); int col_step = ZSMAX(2, (wd + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (wd + col_step-1) / col_step); /* int opt_npix_per_line = ZSMAX(1, ZSMIN(width, zLine)); int col_step = ZSMAX(2, (width + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (width + col_step-1) / col_step); */ // Compute the number of lines to sample and the spacing between lines. // We must ensure that the image is adequately sampled despite its // size, hence there is a lower limit on the number of lines in the // sample. We also want to minimize the number of lines accessed when // accessing a large image, because each disk seek and read is ex- // pensive. The number of lines extracted will be roughly the sample // size divided by zLine, possibly more if the lines are very // short. int hd = params->ymax-params->ymin; int min_nlines_in_sample = ZSMAX(1, zSample_ / zLine_); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(hd, (zSample_ + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, hd / opt_nlines_in_sample); int max_nlines_in_sample = (hd + line_step-1) / line_step; /* int min_nlines_in_sample = ZSMAX(1, zSample / zLine); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(height, (zSample + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, height / opt_nlines_in_sample); int max_nlines_in_sample = (height + line_step-1) / line_step; */ // Allocate space for the output vector. Buffer must be freed by our caller. int maxpix = npix_per_line * max_nlines_in_sample; *sample = new float[maxpix]; // float* row = new float[width]; float* row = new float[wd]; // Extract the vector int npix = 0; float* op = *sample; // for (int line = (line_step + 1)/2; line < height; line+=line_step) { for (int line = (line_step + 1)/2 + params->ymin; line < params->ymax; line+=line_step) { // Load a row of values from the image // for (int i=0; i < width; i++) { for (int i=0; ixmin); float value = !byteswap_ ? *ptr : swap(ptr); if (isfinite(value)) row[i] = hasscaling_ ? value * bscale_ + bzero_ : value; else row[i] = NAN; } int got = zSubSample(row, op, npix_per_line, col_step); op += got; npix += got; if (npix >= maxpix) break; } delete [] row; return npix; } template <> int FitsDatam::zSampleImage(float** sample, FitsBound* params) { // Compute the number of pixels each line will contribute to the sample, // and the subsampling step size for a line. The sampling grid must // span the whole line on a uniform grid. int wd = params->xmax - params->xmin; int opt_npix_per_line = ZSMAX(1, ZSMIN(wd, zLine_)); int col_step = ZSMAX(2, (wd + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (wd + col_step-1) / col_step); /* int opt_npix_per_line = ZSMAX(1, ZSMIN(width, zLine)); int col_step = ZSMAX(2, (width + opt_npix_per_line-1) / opt_npix_per_line); int npix_per_line = ZSMAX(1, (width + col_step-1) / col_step); */ // Compute the number of lines to sample and the spacing between lines. // We must ensure that the image is adequately sampled despite its // size, hence there is a lower limit on the number of lines in the // sample. We also want to minimize the number of lines accessed when // accessing a large image, because each disk seek and read is ex- // pensive. The number of lines extracted will be roughly the sample // size divided by zLine, possibly more if the lines are very // short. int hd = params->ymax-params->ymin; int min_nlines_in_sample = ZSMAX(1, zSample_ / zLine_); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(hd, (zSample_ + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, hd / opt_nlines_in_sample); int max_nlines_in_sample = (hd + line_step-1) / line_step; /* int min_nlines_in_sample = ZSMAX(1, zSample / zLine); int opt_nlines_in_sample = ZSMAX(min_nlines_in_sample, ZSMIN(height, (zSample + npix_per_line-1) / npix_per_line)); int line_step = ZSMAX(2, height / opt_nlines_in_sample); int max_nlines_in_sample = (height + line_step-1) / line_step; */ // Allocate space for the output vector. Buffer must be freed by our caller. int maxpix = npix_per_line * max_nlines_in_sample; *sample = new float[maxpix]; // float* row = new float[width]; float* row = new float[wd]; // Extract the vector int npix = 0; float* op = *sample; // for (int line = (line_step + 1)/2; line < height; line+=line_step) { for (int line = (line_step + 1)/2 + params->ymin; line < params->ymax; line+=line_step) { // Load a row of values from the image // for (int i=0; i < width; i++) { for (int i=0; ixmin); double value = !byteswap_ ? *ptr : swap(ptr); if (isfinite(value)) row[i] = hasscaling_ ? (float)value * bscale_ + bzero_ : (float)value; else row[i] = NAN; } int got = zSubSample(row, op, npix_per_line, col_step); op += got; npix += got; if (npix >= maxpix) break; } delete [] row; return npix; } // subSample -- Subsample an image line. Extract the first pixel and // every "step"th pixel thereafter for a total of npix pixels. int FitsData::zSubSample(float* a, float* b, int npix, int step) { if (step <= 1) step = 1; int got = 0; int ip = 0; for (int i=0; i 0) { double rowrat = sumx / sumxsqr; z0 = (sumz - rowrat * sumxz) / (ngoodpix - rowrat * sumx); dz = (sumxz - z0 * sumx) / sumxsqr; } if (ngoodpix >= last_ngoodpix || ngoodpix < minpix) break; } // Transform the line coefficients back to the X range [1:npix] *zstart = z0 - dz; *zslope = dz * xscale; delete [] flat; delete [] normx; delete [] badpix; return ngoodpix; } // flattenData -- Compute and subtract the fitted line from the data array, // returned the flattened data in FLAT. void FitsData::zFlattenData(float* sampleData, float* flat, float* x, int npix, float z0, float dz) { for (int i=0; i < npix; i++) flat[i] = sampleData[i] - (x[i] * dz + z0); } // computeSigma -- Compute the root mean square deviation from the // mean of a flattened array. Ignore rejected pixels. int FitsData::zComputeSigma(float* a, short* badpix, int npix, float* mean, float* sigma) { int ngoodpix = 0; double sum = 0.0; double sumsq = 0.0; // Accumulate sum and sum of squares for (int i=0; i < npix; i++) if (badpix[i] == GOOD_PIXEL) { float pixval = a[i]; ngoodpix = ngoodpix + 1; sum = sum + pixval; sumsq = sumsq + pixval * pixval; } // Compute mean and sigma switch (ngoodpix) { case 0: *mean = ZSINDEF; *sigma = ZSINDEF; break; case 1: *mean = sum; *sigma = ZSINDEF; break; default: *mean = sum / ngoodpix; double temp = sumsq / (ngoodpix-1) - (sum*sum) / (ngoodpix*(ngoodpix - 1)); if (temp < 0) // possible with roundoff error *sigma = 0.0; else *sigma = sqrt(temp); } return ngoodpix; } // rejectPixels -- Detect and reject pixels more than "threshold" greyscale // units from the fitted line. The residuals about the fitted line are given // by the "flat" array, while the raw data is in "data". Each time a pixel // is rejected subtract its contributions from the matrix sums and flag the // pixel as rejected. When a pixel is rejected reject its neighbors out to // a specified radius as well. This speeds up convergence considerably and // produces a more stringent rejection criteria which takes advantage of the // fact that bad pixels tend to be clumped. The number of pixels left in the // fit is returned as the function value. int FitsData::zRejectPixels(float* sampleData, float* flat, float *normx, short *badpix, int npix, double* sumxsqr, double* sumxz, double* sumx, double* sumz, float threshold, int ngrow) { int ngoodpix = npix; float lcut = -threshold; float hcut = threshold; for (int i=0; i < npix; i++) { if (badpix[i] == BAD_PIXEL) ngoodpix = ngoodpix - 1; else { float residual = flat[i]; if (residual < lcut || residual > hcut) { // Reject the pixel and its neighbors out to the growing // radius. We must be careful how we do this to avoid // directional effects. Do not turn off thresholding on // pixels in the forward direction; mark them for rejection // but do not reject until they have been thresholded. // If this is not done growing will not be symmetric. for (int j=ZSMAX(0,i-ngrow); j < ZSMIN(npix,i+ngrow); j++) { if (badpix[j] != BAD_PIXEL) { if (j <= i) { double x = normx[j]; double z = sampleData[j]; *sumxsqr = *sumxsqr - (x * x); *sumxz = *sumxz - z * x; *sumx = *sumx - x; *sumz = *sumz - z; badpix[j] = BAD_PIXEL; ngoodpix = ngoodpix - 1; } else badpix[j] = REJECT_PIXEL; } } } } } return ngoodpix; } template class FitsDatam; template class FitsDatam; template class FitsDatam; template class FitsDatam; template class FitsDatam; template class FitsDatam; template class FitsDatam;