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author | Raymond Hettinger <rhettinger@users.noreply.github.com> | 2021-12-01 00:20:08 (GMT) |
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committer | GitHub <noreply@github.com> | 2021-12-01 00:20:08 (GMT) |
commit | a39f46afdead515e7ac3722464b5ee8d7b0b2c9b (patch) | |
tree | d6f13232e73c75e9f8514411930add6a531b5ea6 /Lib/statistics.py | |
parent | 8a45ca542a65ea27e7acaa44a4c833a27830e796 (diff) | |
download | cpython-a39f46afdead515e7ac3722464b5ee8d7b0b2c9b.zip cpython-a39f46afdead515e7ac3722464b5ee8d7b0b2c9b.tar.gz cpython-a39f46afdead515e7ac3722464b5ee8d7b0b2c9b.tar.bz2 |
bpo-45876: Correctly rounded stdev() and pstdev() for the Decimal case (GH-29828)
Diffstat (limited to 'Lib/statistics.py')
-rw-r--r-- | Lib/statistics.py | 79 |
1 files changed, 66 insertions, 13 deletions
diff --git a/Lib/statistics.py b/Lib/statistics.py index cf8eaa0..9f1efa2 100644 --- a/Lib/statistics.py +++ b/Lib/statistics.py @@ -137,7 +137,7 @@ from decimal import Decimal from itertools import groupby, repeat from bisect import bisect_left, bisect_right from math import hypot, sqrt, fabs, exp, erf, tau, log, fsum -from operator import itemgetter, mul +from operator import mul from collections import Counter, namedtuple _SQRT2 = sqrt(2.0) @@ -248,6 +248,28 @@ def _exact_ratio(x): x is expected to be an int, Fraction, Decimal or float. """ + + # XXX We should revisit whether using fractions to accumulate exact + # ratios is the right way to go. + + # The integer ratios for binary floats can have numerators or + # denominators with over 300 decimal digits. The problem is more + # acute with decimal floats where the the default decimal context + # supports a huge range of exponents from Emin=-999999 to + # Emax=999999. When expanded with as_integer_ratio(), numbers like + # Decimal('3.14E+5000') and Decimal('3.14E-5000') have large + # numerators or denominators that will slow computation. + + # When the integer ratios are accumulated as fractions, the size + # grows to cover the full range from the smallest magnitude to the + # largest. For example, Fraction(3.14E+300) + Fraction(3.14E-300), + # has a 616 digit numerator. Likewise, + # Fraction(Decimal('3.14E+5000')) + Fraction(Decimal('3.14E-5000')) + # has 10,003 digit numerator. + + # This doesn't seem to have been problem in practice, but it is a + # potential pitfall. + try: return x.as_integer_ratio() except AttributeError: @@ -305,28 +327,60 @@ def _fail_neg(values, errmsg='negative value'): raise StatisticsError(errmsg) yield x -def _isqrt_frac_rto(n: int, m: int) -> float: + +def _integer_sqrt_of_frac_rto(n: int, m: int) -> int: """Square root of n/m, rounded to the nearest integer using round-to-odd.""" # Reference: https://www.lri.fr/~melquion/doc/05-imacs17_1-expose.pdf a = math.isqrt(n // m) return a | (a*a*m != n) -# For 53 bit precision floats, the _sqrt_frac() shift is 109. -_sqrt_shift: int = 2 * sys.float_info.mant_dig + 3 -def _sqrt_frac(n: int, m: int) -> float: +# For 53 bit precision floats, the bit width used in +# _float_sqrt_of_frac() is 109. +_sqrt_bit_width: int = 2 * sys.float_info.mant_dig + 3 + + +def _float_sqrt_of_frac(n: int, m: int) -> float: """Square root of n/m as a float, correctly rounded.""" # See principle and proof sketch at: https://bugs.python.org/msg407078 - q = (n.bit_length() - m.bit_length() - _sqrt_shift) // 2 + q = (n.bit_length() - m.bit_length() - _sqrt_bit_width) // 2 if q >= 0: - numerator = _isqrt_frac_rto(n, m << 2 * q) << q + numerator = _integer_sqrt_of_frac_rto(n, m << 2 * q) << q denominator = 1 else: - numerator = _isqrt_frac_rto(n << -2 * q, m) + numerator = _integer_sqrt_of_frac_rto(n << -2 * q, m) denominator = 1 << -q return numerator / denominator # Convert to float +def _decimal_sqrt_of_frac(n: int, m: int) -> Decimal: + """Square root of n/m as a Decimal, correctly rounded.""" + # Premise: For decimal, computing (n/m).sqrt() can be off + # by 1 ulp from the correctly rounded result. + # Method: Check the result, moving up or down a step if needed. + if n <= 0: + if not n: + return Decimal('0.0') + n, m = -n, -m + + root = (Decimal(n) / Decimal(m)).sqrt() + nr, dr = root.as_integer_ratio() + + plus = root.next_plus() + np, dp = plus.as_integer_ratio() + # test: n / m > ((root + plus) / 2) ** 2 + if 4 * n * (dr*dp)**2 > m * (dr*np + dp*nr)**2: + return plus + + minus = root.next_minus() + nm, dm = minus.as_integer_ratio() + # test: n / m < ((root + minus) / 2) ** 2 + if 4 * n * (dr*dm)**2 < m * (dr*nm + dm*nr)**2: + return minus + + return root + + # === Measures of central tendency (averages) === def mean(data): @@ -869,7 +923,7 @@ def stdev(data, xbar=None): if hasattr(T, 'sqrt'): var = _convert(mss, T) return var.sqrt() - return _sqrt_frac(mss.numerator, mss.denominator) + return _float_sqrt_of_frac(mss.numerator, mss.denominator) def pstdev(data, mu=None): @@ -888,10 +942,9 @@ def pstdev(data, mu=None): raise StatisticsError('pstdev requires at least one data point') T, ss = _ss(data, mu) mss = ss / n - if hasattr(T, 'sqrt'): - var = _convert(mss, T) - return var.sqrt() - return _sqrt_frac(mss.numerator, mss.denominator) + if issubclass(T, Decimal): + return _decimal_sqrt_of_frac(mss.numerator, mss.denominator) + return _float_sqrt_of_frac(mss.numerator, mss.denominator) # === Statistics for relations between two inputs === |