1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
|
#-----------------------------------------------------------------------
#
# Copyright (C) 2000, 2001 by Autonomous Zone Industries
# Copyright (C) 2002 Gregory P. Smith
#
# License: This is free software. You may use this software for any
# purpose including modification/redistribution, so long as
# this header remains intact and that you do not claim any
# rights of ownership or authorship of this software. This
# software has been tested, but no warranty is expressed or
# implied.
#
# -- Gregory P. Smith <greg@krypto.org>
# This provides a simple database table interface built on top of
# the Python BerkeleyDB 3 interface.
#
_cvsid = '$Id$'
import re
import sys
import copy
import xdrlib
import random
import pickle
from bsddb.db import *
# All table names, row names etc. must be ASCII strings
# However, rowids, when represented as strings, are latin-1 encoded
def _E(s):
return s.encode("ascii")
# XXX(nnorwitz): is this correct? DBIncompleteError is conditional in _bsddb.c
try:
DBIncompleteError
except NameError:
class DBIncompleteError(Exception):
pass
class TableDBError(Exception):
pass
class TableAlreadyExists(TableDBError):
pass
class Cond:
"""This condition matches everything"""
def __call__(self, s):
return 1
class ExactCond(Cond):
"""Acts as an exact match condition function"""
def __init__(self, strtomatch, encoding="utf-8"):
self.strtomatch = strtomatch.encode(encoding)
def __call__(self, s):
return s == self.strtomatch
class PrefixCond(Cond):
"""Acts as a condition function for matching a string prefix"""
def __init__(self, prefix, encoding="utf-8"):
self.prefix = prefix.encode(encoding)
def __call__(self, s):
return s[:len(self.prefix)] == self.prefix
class PostfixCond(Cond):
"""Acts as a condition function for matching a string postfix"""
def __init__(self, postfix, encoding="utf-8"):
self.postfix = postfix.encode(encoding)
def __call__(self, s):
return s[-len(self.postfix):] == self.postfix
class LikeCond(Cond):
"""
Acts as a function that will match using an SQL 'LIKE' style
string. Case insensitive and % signs are wild cards.
This isn't perfect but it should work for the simple common cases.
"""
def __init__(self, likestr, re_flags=re.IGNORECASE, encoding="utf-8"):
# escape python re characters
chars_to_escape = '.*+()[]?'
for char in chars_to_escape :
likestr = likestr.replace(char, '\\'+char)
# convert %s to wildcards
self.likestr = likestr.replace('%', '.*')
self.re = re.compile('^'+self.likestr+'$', re_flags)
self.encoding = encoding
def __call__(self, s):
return self.re.match(s.decode(self.encoding))
#
# keys used to store database metadata
#
_table_names_key = '__TABLE_NAMES__' # list of the tables in this db
_columns = '._COLUMNS__' # table_name+this key contains a list of columns
def _columns_key(table):
return _E(table + _columns)
#
# these keys are found within table sub databases
#
_data = '._DATA_.' # this+column+this+rowid key contains table data
_rowid = '._ROWID_.' # this+rowid+this key contains a unique entry for each
# row in the table. (no data is stored)
_rowid_str_len = 8 # length in bytes of the unique rowid strings
def _data_key(table, col, rowid):
return _E(table + _data + col + _data) + rowid
def _search_col_data_key(table, col):
return _E(table + _data + col + _data)
def _search_all_data_key(table):
return _E(table + _data)
def _rowid_key(table, rowid):
return _E(table + _rowid) + rowid + _E(_rowid)
def _search_rowid_key(table):
return _E(table + _rowid)
def contains_metastrings(s) :
"""Verify that the given string does not contain any
metadata strings that might interfere with dbtables database operation.
"""
if (s.find(_table_names_key) >= 0 or
s.find(_columns) >= 0 or
s.find(_data) >= 0 or
s.find(_rowid) >= 0):
# Then
return 1
else:
return 0
class bsdTableDB :
def __init__(self, filename, dbhome, create=0, truncate=0, mode=0o600,
recover=0, dbflags=0):
"""bsdTableDB(filename, dbhome, create=0, truncate=0, mode=0o600)
Open database name in the dbhome BerkeleyDB directory.
Use keyword arguments when calling this constructor.
"""
self.db = None
myflags = DB_THREAD
if create:
myflags |= DB_CREATE
flagsforenv = (DB_INIT_MPOOL | DB_INIT_LOCK | DB_INIT_LOG |
DB_INIT_TXN | dbflags)
# DB_AUTO_COMMIT isn't a valid flag for env.open()
try:
dbflags |= DB_AUTO_COMMIT
except AttributeError:
pass
if recover:
flagsforenv = flagsforenv | DB_RECOVER
self.env = DBEnv()
# enable auto deadlock avoidance
self.env.set_lk_detect(DB_LOCK_DEFAULT)
self.env.open(dbhome, myflags | flagsforenv)
if truncate:
myflags |= DB_TRUNCATE
self.db = DB(self.env)
# this code relies on DBCursor.set* methods to raise exceptions
# rather than returning None
self.db.set_get_returns_none(1)
# allow duplicate entries [warning: be careful w/ metadata]
self.db.set_flags(DB_DUP)
self.db.open(filename, DB_BTREE, dbflags | myflags, mode)
self.dbfilename = filename
# Initialize the table names list if this is a new database
txn = self.env.txn_begin()
try:
if not self.db.has_key(_E(_table_names_key), txn):
self.db.put(_E(_table_names_key), pickle.dumps([], 1), txn=txn)
# Yes, bare except
except:
txn.abort()
raise
else:
txn.commit()
# TODO verify more of the database's metadata?
self.__tablecolumns = {}
def __del__(self):
self.close()
def close(self):
if self.db is not None:
self.db.close()
self.db = None
if self.env is not None:
self.env.close()
self.env = None
def checkpoint(self, mins=0):
try:
self.env.txn_checkpoint(mins)
except DBIncompleteError:
pass
def sync(self):
try:
self.db.sync()
except DBIncompleteError:
pass
def _db_print(self) :
"""Print the database to stdout for debugging"""
print("******** Printing raw database for debugging ********")
cur = self.db.cursor()
try:
key, data = cur.first()
while 1:
print(repr({key: data}))
next = cur.next()
if next:
key, data = next
else:
cur.close()
return
except DBNotFoundError:
cur.close()
def CreateTable(self, table, columns):
"""CreateTable(table, columns) - Create a new table in the database.
raises TableDBError if it already exists or for other DB errors.
"""
assert isinstance(columns, list)
txn = None
try:
# checking sanity of the table and column names here on
# table creation will prevent problems elsewhere.
if contains_metastrings(table):
raise ValueError(
"bad table name: contains reserved metastrings")
for column in columns :
if contains_metastrings(column):
raise ValueError(
"bad column name: contains reserved metastrings")
columnlist_key = _columns_key(table)
if self.db.has_key(columnlist_key):
raise TableAlreadyExists("table already exists")
txn = self.env.txn_begin()
# store the table's column info
self.db.put(columnlist_key, pickle.dumps(columns, 1), txn=txn)
# add the table name to the tablelist
tablelist = pickle.loads(self.db.get(_E(_table_names_key), txn=txn,
flags=DB_RMW))
tablelist.append(table)
# delete 1st, in case we opened with DB_DUP
self.db.delete(_E(_table_names_key), txn)
self.db.put(_E(_table_names_key), pickle.dumps(tablelist, 1), txn=txn)
txn.commit()
txn = None
except DBError as dberror:
raise TableDBError(dberror.args[1])
finally:
if txn:
txn.abort()
txn = None
def ListTableColumns(self, table):
"""Return a list of columns in the given table.
[] if the table doesn't exist.
"""
assert isinstance(table, str)
if contains_metastrings(table):
raise ValueError("bad table name: contains reserved metastrings")
columnlist_key = _columns_key(table)
if not self.db.has_key(columnlist_key):
return []
pickledcolumnlist = self.db.get(columnlist_key)
if pickledcolumnlist:
return pickle.loads(pickledcolumnlist)
else:
return []
def ListTables(self):
"""Return a list of tables in this database."""
pickledtablelist = self.db.get(_E(_table_names_key))
if pickledtablelist:
return pickle.loads(pickledtablelist)
else:
return []
def CreateOrExtendTable(self, table, columns):
"""CreateOrExtendTable(table, columns)
Create a new table in the database.
If a table of this name already exists, extend it to have any
additional columns present in the given list as well as
all of its current columns.
"""
assert isinstance(columns, list)
try:
self.CreateTable(table, columns)
except TableAlreadyExists:
# the table already existed, add any new columns
txn = None
try:
columnlist_key = _columns_key(table)
txn = self.env.txn_begin()
# load the current column list
oldcolumnlist = pickle.loads(
self.db.get(columnlist_key, txn=txn, flags=DB_RMW))
# create a hash table for fast lookups of column names in the
# loop below
oldcolumnhash = {}
for c in oldcolumnlist:
oldcolumnhash[c] = c
# create a new column list containing both the old and new
# column names
newcolumnlist = copy.copy(oldcolumnlist)
for c in columns:
if c not in oldcolumnhash:
newcolumnlist.append(c)
# store the table's new extended column list
if newcolumnlist != oldcolumnlist :
# delete the old one first since we opened with DB_DUP
self.db.delete(columnlist_key, txn)
self.db.put(columnlist_key,
pickle.dumps(newcolumnlist, 1),
txn=txn)
txn.commit()
txn = None
self.__load_column_info(table)
except DBError as dberror:
raise TableDBError(dberror.args[1])
finally:
if txn:
txn.abort()
def __load_column_info(self, table) :
"""initialize the self.__tablecolumns dict"""
# check the column names
try:
tcolpickles = self.db.get(_columns_key(table))
except DBNotFoundError:
raise TableDBError("unknown table: %r" % (table,))
if not tcolpickles:
raise TableDBError("unknown table: %r" % (table,))
self.__tablecolumns[table] = pickle.loads(tcolpickles)
def __new_rowid(self, table, txn) :
"""Create a new unique row identifier"""
unique = 0
while not unique:
# Generate a random 64-bit row ID string
# (note: this code has <64 bits of randomness
# but it's plenty for our database id needs!)
p = xdrlib.Packer()
p.pack_int(int(random.random()*2147483647))
p.pack_int(int(random.random()*2147483647))
newid = p.get_buffer()
# Guarantee uniqueness by adding this key to the database
try:
self.db.put(_rowid_key(table, newid), None, txn=txn,
flags=DB_NOOVERWRITE)
except DBKeyExistError:
pass
else:
unique = 1
return newid
def Insert(self, table, rowdict) :
"""Insert(table, datadict) - Insert a new row into the table
using the keys+values from rowdict as the column values.
"""
txn = None
try:
if not self.db.has_key(_columns_key(table)):
raise TableDBError("unknown table")
# check the validity of each column name
if table not in self.__tablecolumns:
self.__load_column_info(table)
for column in rowdict.keys() :
if not self.__tablecolumns[table].count(column):
raise TableDBError("unknown column: %r" % (column,))
# get a unique row identifier for this row
txn = self.env.txn_begin()
rowid = self.__new_rowid(table, txn=txn)
# insert the row values into the table database
for column, dataitem in rowdict.items():
# store the value
self.db.put(_data_key(table, column, rowid), dataitem, txn=txn)
txn.commit()
txn = None
except DBError as dberror:
# WIBNI we could just abort the txn and re-raise the exception?
# But no, because TableDBError is not related to DBError via
# inheritance, so it would be backwards incompatible. Do the next
# best thing.
info = sys.exc_info()
if txn:
txn.abort()
self.db.delete(_rowid_key(table, rowid))
txn = None
raise TableDBError(dberror.args[1]).with_traceback(info[2])
finally:
if txn:
txn.abort()
def Modify(self, table, conditions={}, mappings={}):
"""Modify(table, conditions={}, mappings={}) - Modify items in rows matching 'conditions' using mapping functions in 'mappings'
* table - the table name
* conditions - a dictionary keyed on column names containing
a condition callable expecting the data string as an
argument and returning a boolean.
* mappings - a dictionary keyed on column names containing a
condition callable expecting the data string as an argument and
returning the new string for that column.
"""
try:
matching_rowids = self.__Select(table, [], conditions)
# modify only requested columns
columns = mappings.keys()
for rowid in matching_rowids.keys():
rowid = rowid.encode("latin-1")
txn = None
try:
for column in columns:
txn = self.env.txn_begin()
# modify the requested column
try:
dataitem = self.db.get(
_data_key(table, column, rowid),
txn)
self.db.delete(
_data_key(table, column, rowid),
txn)
except DBNotFoundError:
# XXXXXXX row key somehow didn't exist, assume no
# error
dataitem = None
dataitem = mappings[column](dataitem)
if dataitem != None:
self.db.put(
_data_key(table, column, rowid),
dataitem, txn=txn)
txn.commit()
txn = None
# catch all exceptions here since we call unknown callables
finally:
if txn:
txn.abort()
except DBError as dberror:
raise TableDBError(dberror.args[1])
def Delete(self, table, conditions={}):
"""Delete(table, conditions) - Delete items matching the given
conditions from the table.
* conditions - a dictionary keyed on column names containing
condition functions expecting the data string as an
argument and returning a boolean.
"""
try:
matching_rowids = self.__Select(table, [], conditions)
# delete row data from all columns
columns = self.__tablecolumns[table]
for rowid in matching_rowids.keys():
txn = None
try:
txn = self.env.txn_begin()
for column in columns:
# delete the data key
try:
self.db.delete(_data_key(table, column,
rowid.encode("latin-1")),
txn)
except DBNotFoundError:
# XXXXXXX column may not exist, assume no error
pass
try:
self.db.delete(_rowid_key(table, rowid.encode("latin-1")), txn)
except DBNotFoundError:
# XXXXXXX row key somehow didn't exist, assume no error
pass
txn.commit()
txn = None
finally:
if txn:
txn.abort()
except DBError as dberror:
raise TableDBError(dberror.args[1])
def Select(self, table, columns, conditions={}):
"""Select(table, columns, conditions) - retrieve specific row data
Returns a list of row column->value mapping dictionaries.
* columns - a list of which column data to return. If
columns is None, all columns will be returned.
* conditions - a dictionary keyed on column names
containing callable conditions expecting the data string as an
argument and returning a boolean.
"""
try:
if table not in self.__tablecolumns:
self.__load_column_info(table)
if columns is None:
columns = self.__tablecolumns[table]
matching_rowids = self.__Select(table, columns, conditions)
except DBError as dberror:
raise TableDBError(dberror.args[1])
# return the matches as a list of dictionaries
return matching_rowids.values()
def __Select(self, table, columns, conditions):
"""__Select() - Used to implement Select and Delete (above)
Returns a dictionary keyed on rowids containing dicts
holding the row data for columns listed in the columns param
that match the given conditions.
* conditions is a dictionary keyed on column names
containing callable conditions expecting the data string as an
argument and returning a boolean.
"""
# check the validity of each column name
if table not in self.__tablecolumns:
self.__load_column_info(table)
if columns is None:
columns = self.tablecolumns[table]
for column in (columns + list(conditions.keys())):
if not self.__tablecolumns[table].count(column):
raise TableDBError("unknown column: %r" % (column,))
# keyed on rows that match so far, containings dicts keyed on
# column names containing the data for that row and column.
matching_rowids = {}
# keys are rowids that do not match
rejected_rowids = {}
# attempt to sort the conditions in such a way as to minimize full
# column lookups
def cmp_conditions(atuple, btuple):
a = atuple[1]
b = btuple[1]
if type(a) is type(b):
if isinstance(a, PrefixCond) and isinstance(b, PrefixCond):
# longest prefix first
return cmp(len(b.prefix), len(a.prefix))
if isinstance(a, LikeCond) and isinstance(b, LikeCond):
# longest likestr first
return cmp(len(b.likestr), len(a.likestr))
return 0
if isinstance(a, ExactCond):
return -1
if isinstance(b, ExactCond):
return 1
if isinstance(a, PrefixCond):
return -1
if isinstance(b, PrefixCond):
return 1
# leave all unknown condition callables alone as equals
return 0
conditionlist = list(conditions.items())
conditionlist.sort(cmp_conditions)
# Apply conditions to column data to find what we want
cur = self.db.cursor()
column_num = -1
for column, condition in conditionlist:
column_num = column_num + 1
searchkey = _search_col_data_key(table, column)
# speedup: don't linear search columns within loop
if column in columns:
savethiscolumndata = 1 # save the data for return
else:
savethiscolumndata = 0 # data only used for selection
try:
key, data = cur.set_range(searchkey)
while key[:len(searchkey)] == searchkey:
# extract the rowid from the key
rowid = key[-_rowid_str_len:].decode("latin-1")
if rowid not in rejected_rowids:
# if no condition was specified or the condition
# succeeds, add row to our match list.
if not condition or condition(data):
if rowid not in matching_rowids:
matching_rowids[rowid] = {}
if savethiscolumndata:
matching_rowids[rowid][column] = data
else:
if rowid in matching_rowids:
del matching_rowids[rowid]
rejected_rowids[rowid] = rowid
key, data = cur.next()
except DBError as dberror:
if dberror.args[0] != DB_NOTFOUND:
raise
continue
cur.close()
# we're done selecting rows, garbage collect the reject list
del rejected_rowids
# extract any remaining desired column data from the
# database for the matching rows.
if len(columns) > 0:
for rowid, rowdata in matching_rowids.items():
rowid = rowid.encode("latin-1")
for column in columns:
if column in rowdata:
continue
try:
rowdata[column] = self.db.get(
_data_key(table, column, rowid))
except DBError as dberror:
if dberror.args[0] != DB_NOTFOUND:
raise
rowdata[column] = None
# return the matches
return matching_rowids
def Drop(self, table):
"""Remove an entire table from the database"""
txn = None
try:
txn = self.env.txn_begin()
# delete the column list
self.db.delete(_columns_key(table), txn)
cur = self.db.cursor(txn)
# delete all keys containing this tables column and row info
table_key = _search_all_data_key(table)
while 1:
try:
key, data = cur.set_range(table_key)
except DBNotFoundError:
break
# only delete items in this table
if key[:len(table_key)] != table_key:
break
cur.delete()
# delete all rowids used by this table
table_key = _search_rowid_key(table)
while 1:
try:
key, data = cur.set_range(table_key)
except DBNotFoundError:
break
# only delete items in this table
if key[:len(table_key)] != table_key:
break
cur.delete()
cur.close()
# delete the tablename from the table name list
tablelist = pickle.loads(
self.db.get(_E(_table_names_key), txn=txn, flags=DB_RMW))
try:
tablelist.remove(table)
except ValueError:
# hmm, it wasn't there, oh well, that's what we want.
pass
# delete 1st, incase we opened with DB_DUP
self.db.delete(_E(_table_names_key), txn)
self.db.put(_E(_table_names_key), pickle.dumps(tablelist, 1), txn=txn)
txn.commit()
txn = None
if table in self.__tablecolumns:
del self.__tablecolumns[table]
except DBError as dberror:
raise TableDBError(dberror.args[1])
finally:
if txn:
txn.abort()
|