1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
|
"""Interface to the libbzip2 compression library.
This module provides a file interface, classes for incremental
(de)compression, and functions for one-shot (de)compression.
"""
__all__ = ["BZ2File", "BZ2Compressor", "BZ2Decompressor", "compress",
"decompress"]
__author__ = "Nadeem Vawda <nadeem.vawda@gmail.com>"
import io
import threading
import warnings
from _bz2 import BZ2Compressor, BZ2Decompressor
_MODE_CLOSED = 0
_MODE_READ = 1
_MODE_READ_EOF = 2
_MODE_WRITE = 3
_BUFFER_SIZE = 8192
class BZ2File(io.BufferedIOBase):
"""A file object providing transparent bzip2 (de)compression.
A BZ2File can act as a wrapper for an existing file object, or refer
directly to a named file on disk.
Note that BZ2File provides a *binary* file interface - data read is
returned as bytes, and data to be written should be given as bytes.
"""
def __init__(self, filename=None, mode="r", buffering=None,
compresslevel=9, fileobj=None):
"""Open a bzip2-compressed file.
If filename is given, open the named file. Otherwise, operate on
the file object given by fileobj. Exactly one of these two
parameters should be provided.
mode can be 'r' for reading (default), or 'w' for writing.
buffering is ignored. Its use is deprecated.
If mode is 'w', compresslevel can be a number between 1 and 9
specifying the level of compression: 1 produces the least
compression, and 9 (default) produces the most compression.
"""
# This lock must be recursive, so that BufferedIOBase's
# readline(), readlines() and writelines() don't deadlock.
self._lock = threading.RLock()
self._fp = None
self._closefp = False
self._mode = _MODE_CLOSED
self._pos = 0
self._size = -1
if buffering is not None:
warnings.warn("Use of 'buffering' argument is deprecated",
DeprecationWarning)
if not (1 <= compresslevel <= 9):
raise ValueError("compresslevel must be between 1 and 9")
if mode in ("", "r", "rb"):
mode = "rb"
mode_code = _MODE_READ
self._decompressor = BZ2Decompressor()
self._buffer = None
elif mode in ("w", "wb"):
mode = "wb"
mode_code = _MODE_WRITE
self._compressor = BZ2Compressor(compresslevel)
elif mode in ("a", "ab"):
mode = "ab"
mode_code = _MODE_WRITE
self._compressor = BZ2Compressor(compresslevel)
else:
raise ValueError("Invalid mode: {!r}".format(mode))
if filename is not None and fileobj is None:
self._fp = open(filename, mode)
self._closefp = True
self._mode = mode_code
elif fileobj is not None and filename is None:
self._fp = fileobj
self._mode = mode_code
else:
raise ValueError("Must give exactly one of filename and fileobj")
def close(self):
"""Flush and close the file.
May be called more than once without error. Once the file is
closed, any other operation on it will raise a ValueError.
"""
with self._lock:
if self._mode == _MODE_CLOSED:
return
try:
if self._mode in (_MODE_READ, _MODE_READ_EOF):
self._decompressor = None
elif self._mode == _MODE_WRITE:
self._fp.write(self._compressor.flush())
self._compressor = None
finally:
try:
if self._closefp:
self._fp.close()
finally:
self._fp = None
self._closefp = False
self._mode = _MODE_CLOSED
self._buffer = None
@property
def closed(self):
"""True if this file is closed."""
return self._mode == _MODE_CLOSED
def fileno(self):
"""Return the file descriptor for the underlying file."""
return self._fp.fileno()
def seekable(self):
"""Return whether the file supports seeking."""
return self.readable()
def readable(self):
"""Return whether the file was opened for reading."""
return self._mode in (_MODE_READ, _MODE_READ_EOF)
def writable(self):
"""Return whether the file was opened for writing."""
return self._mode == _MODE_WRITE
# Mode-checking helper functions.
def _check_not_closed(self):
if self.closed:
raise ValueError("I/O operation on closed file")
def _check_can_read(self):
if not self.readable():
self._check_not_closed()
raise io.UnsupportedOperation("File not open for reading")
def _check_can_write(self):
if not self.writable():
self._check_not_closed()
raise io.UnsupportedOperation("File not open for writing")
def _check_can_seek(self):
if not self.seekable():
self._check_not_closed()
raise io.UnsupportedOperation("Seeking is only supported "
"on files open for reading")
# Fill the readahead buffer if it is empty. Returns False on EOF.
def _fill_buffer(self):
if self._buffer:
return True
if self._decompressor.unused_data:
rawblock = self._decompressor.unused_data
else:
rawblock = self._fp.read(_BUFFER_SIZE)
if not rawblock:
if self._decompressor.eof:
self._mode = _MODE_READ_EOF
self._size = self._pos
return False
else:
raise EOFError("Compressed file ended before the "
"end-of-stream marker was reached")
# Continue to next stream.
if self._decompressor.eof:
self._decompressor = BZ2Decompressor()
self._buffer = self._decompressor.decompress(rawblock)
return True
# Read data until EOF.
# If return_data is false, consume the data without returning it.
def _read_all(self, return_data=True):
blocks = []
while self._fill_buffer():
if return_data:
blocks.append(self._buffer)
self._pos += len(self._buffer)
self._buffer = None
if return_data:
return b"".join(blocks)
# Read a block of up to n bytes.
# If return_data is false, consume the data without returning it.
def _read_block(self, n, return_data=True):
blocks = []
while n > 0 and self._fill_buffer():
if n < len(self._buffer):
data = self._buffer[:n]
self._buffer = self._buffer[n:]
else:
data = self._buffer
self._buffer = None
if return_data:
blocks.append(data)
self._pos += len(data)
n -= len(data)
if return_data:
return b"".join(blocks)
def peek(self, n=0):
"""Return buffered data without advancing the file position.
Always returns at least one byte of data, unless at EOF.
The exact number of bytes returned is unspecified.
"""
with self._lock:
self._check_can_read()
if self._mode == _MODE_READ_EOF or not self._fill_buffer():
return b""
return self._buffer
def read(self, size=-1):
"""Read up to size uncompressed bytes from the file.
If size is negative or omitted, read until EOF is reached.
Returns b'' if the file is already at EOF.
"""
with self._lock:
self._check_can_read()
if self._mode == _MODE_READ_EOF or size == 0:
return b""
elif size < 0:
return self._read_all()
else:
return self._read_block(size)
def read1(self, size=-1):
"""Read up to size uncompressed bytes with at most one read
from the underlying stream.
Returns b'' if the file is at EOF.
"""
with self._lock:
self._check_can_read()
if (size == 0 or self._mode == _MODE_READ_EOF or
not self._fill_buffer()):
return b""
if 0 < size < len(self._buffer):
data = self._buffer[:size]
self._buffer = self._buffer[size:]
else:
data = self._buffer
self._buffer = None
self._pos += len(data)
return data
def readinto(self, b):
"""Read up to len(b) bytes into b.
Returns the number of bytes read (0 for EOF).
"""
with self._lock:
return io.BufferedIOBase.readinto(self, b)
def readline(self, size=-1):
"""Read a line of uncompressed bytes from the file.
The terminating newline (if present) is retained. If size is
non-negative, no more than size bytes will be read (in which
case the line may be incomplete). Returns b'' if already at EOF.
"""
if not hasattr(size, "__index__"):
raise TypeError("Integer argument expected")
size = size.__index__()
with self._lock:
return io.BufferedIOBase.readline(self, size)
def readlines(self, size=-1):
"""Read a list of lines of uncompressed bytes from the file.
size can be specified to control the number of lines read: no
further lines will be read once the total size of the lines read
so far equals or exceeds size.
"""
if not hasattr(size, "__index__"):
raise TypeError("Integer argument expected")
size = size.__index__()
with self._lock:
return io.BufferedIOBase.readlines(self, size)
def write(self, data):
"""Write a byte string to the file.
Returns the number of uncompressed bytes written, which is
always len(data). Note that due to buffering, the file on disk
may not reflect the data written until close() is called.
"""
with self._lock:
self._check_can_write()
compressed = self._compressor.compress(data)
self._fp.write(compressed)
self._pos += len(data)
return len(data)
def writelines(self, seq):
"""Write a sequence of byte strings to the file.
Returns the number of uncompressed bytes written.
seq can be any iterable yielding byte strings.
Line separators are not added between the written byte strings.
"""
with self._lock:
return io.BufferedIOBase.writelines(self, seq)
# Rewind the file to the beginning of the data stream.
def _rewind(self):
self._fp.seek(0, 0)
self._mode = _MODE_READ
self._pos = 0
self._decompressor = BZ2Decompressor()
self._buffer = None
def seek(self, offset, whence=0):
"""Change the file position.
The new position is specified by offset, relative to the
position indicated by whence. Values for whence are:
0: start of stream (default); offset must not be negative
1: current stream position
2: end of stream; offset must not be positive
Returns the new file position.
Note that seeking is emulated, so depending on the parameters,
this operation may be extremely slow.
"""
with self._lock:
self._check_can_seek()
# Recalculate offset as an absolute file position.
if whence == 0:
pass
elif whence == 1:
offset = self._pos + offset
elif whence == 2:
# Seeking relative to EOF - we need to know the file's size.
if self._size < 0:
self._read_all(return_data=False)
offset = self._size + offset
else:
raise ValueError("Invalid value for whence: {}".format(whence))
# Make it so that offset is the number of bytes to skip forward.
if offset < self._pos:
self._rewind()
else:
offset -= self._pos
# Read and discard data until we reach the desired position.
if self._mode != _MODE_READ_EOF:
self._read_block(offset, return_data=False)
return self._pos
def tell(self):
"""Return the current file position."""
with self._lock:
self._check_not_closed()
return self._pos
def compress(data, compresslevel=9):
"""Compress a block of data.
compresslevel, if given, must be a number between 1 and 9.
For incremental compression, use a BZ2Compressor object instead.
"""
comp = BZ2Compressor(compresslevel)
return comp.compress(data) + comp.flush()
def decompress(data):
"""Decompress a block of data.
For incremental decompression, use a BZ2Decompressor object instead.
"""
if len(data) == 0:
return b""
results = []
while True:
decomp = BZ2Decompressor()
results.append(decomp.decompress(data))
if not decomp.eof:
raise ValueError("Compressed data ended before the "
"end-of-stream marker was reached")
if not decomp.unused_data:
return b"".join(results)
# There is unused data left over. Proceed to next stream.
data = decomp.unused_data
|