1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
|
"""Functions that read and write gzipped files.
The user of the file doesn't have to worry about the compression,
but random access is not allowed."""
# based on Andrew Kuchling's minigzip.py distributed with the zlib module
import struct, sys, time, os
import zlib
import builtins
import io
__all__ = ["GzipFile", "open", "compress", "decompress"]
FTEXT, FHCRC, FEXTRA, FNAME, FCOMMENT = 1, 2, 4, 8, 16
READ, WRITE = 1, 2
def U32(i):
"""Return i as an unsigned integer, assuming it fits in 32 bits.
If it's >= 2GB when viewed as a 32-bit unsigned int, return a long.
"""
if i < 0:
i += 1 << 32
return i
def LOWU32(i):
"""Return the low-order 32 bits, as a non-negative int"""
return i & 0xFFFFFFFF
def write32u(output, value):
# The L format writes the bit pattern correctly whether signed
# or unsigned.
output.write(struct.pack("<L", value))
def read32(input):
return struct.unpack("<I", input.read(4))[0]
def open(filename, mode="rb", compresslevel=9):
"""Shorthand for GzipFile(filename, mode, compresslevel).
The filename argument is required; mode defaults to 'rb'
and compresslevel defaults to 9.
"""
return GzipFile(filename, mode, compresslevel)
class _PaddedFile:
"""Minimal read-only file object that prepends a string to the contents
of an actual file. Shouldn't be used outside of gzip.py, as it lacks
essential functionality."""
def __init__(self, f, prepend=b''):
self._buffer = prepend
self._length = len(prepend)
self.file = f
self._read = 0
def read(self, size):
if self._read is None:
return self.file.read(size)
if self._read + size <= self._length:
read = self._read
self._read += size
return self._buffer[read:self._read]
else:
read = self._read
self._read = None
return self._buffer[read:] + \
self.file.read(size-self._length+read)
def prepend(self, prepend=b'', readprevious=False):
if self._read is None:
self._buffer = prepend
elif readprevious and len(prepend) <= self._read:
self._read -= len(prepend)
return
else:
self._buffer = self._buffer[read:] + prepend
self._length = len(self._buffer)
self._read = 0
def unused(self):
if self._read is None:
return b''
return self._buffer[self._read:]
def seek(self, offset, whence=0):
# This is only ever called with offset=whence=0
if whence == 1 and self._read is not None:
if 0 <= offset + self._read <= self._length:
self._read += offset
return
else:
offset += self._length - self._read
self._read = None
self._buffer = None
return self.file.seek(offset, whence)
def __getattr__(self, name):
return getattr(name, self.file)
class GzipFile(io.BufferedIOBase):
"""The GzipFile class simulates most of the methods of a file object with
the exception of the readinto() and truncate() methods.
"""
myfileobj = None
max_read_chunk = 10 * 1024 * 1024 # 10Mb
def __init__(self, filename=None, mode=None,
compresslevel=9, fileobj=None, mtime=None):
"""Constructor for the GzipFile class.
At least one of fileobj and filename must be given a
non-trivial value.
The new class instance is based on fileobj, which can be a regular
file, a StringIO object, or any other object which simulates a file.
It defaults to None, in which case filename is opened to provide
a file object.
When fileobj is not None, the filename argument is only used to be
included in the gzip file header, which may includes the original
filename of the uncompressed file. It defaults to the filename of
fileobj, if discernible; otherwise, it defaults to the empty string,
and in this case the original filename is not included in the header.
The mode argument can be any of 'r', 'rb', 'a', 'ab', 'w', or 'wb',
depending on whether the file will be read or written. The default
is the mode of fileobj if discernible; otherwise, the default is 'rb'.
Be aware that only the 'rb', 'ab', and 'wb' values should be used
for cross-platform portability.
The compresslevel argument is an integer from 1 to 9 controlling the
level of compression; 1 is fastest and produces the least compression,
and 9 is slowest and produces the most compression. The default is 9.
The mtime argument is an optional numeric timestamp to be written
to the stream when compressing. All gzip compressed streams
are required to contain a timestamp. If omitted or None, the
current time is used. This module ignores the timestamp when
decompressing; however, some programs, such as gunzip, make use
of it. The format of the timestamp is the same as that of the
return value of time.time() and of the st_mtime member of the
object returned by os.stat().
"""
# guarantee the file is opened in binary mode on platforms
# that care about that sort of thing
if mode and 'b' not in mode:
mode += 'b'
if fileobj is None:
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
if filename is None:
if hasattr(fileobj, 'name'): filename = fileobj.name
else: filename = ''
if mode is None:
if hasattr(fileobj, 'mode'): mode = fileobj.mode
else: mode = 'rb'
if mode[0:1] == 'r':
self.mode = READ
# Set flag indicating start of a new member
self._new_member = True
# Buffer data read from gzip file. extrastart is offset in
# stream where buffer starts. extrasize is number of
# bytes remaining in buffer from current stream position.
self.extrabuf = b""
self.extrasize = 0
self.extrastart = 0
self.name = filename
# Starts small, scales exponentially
self.min_readsize = 100
fileobj = _PaddedFile(fileobj)
elif mode[0:1] == 'w' or mode[0:1] == 'a':
self.mode = WRITE
self._init_write(filename)
self.compress = zlib.compressobj(compresslevel,
zlib.DEFLATED,
-zlib.MAX_WBITS,
zlib.DEF_MEM_LEVEL,
0)
else:
raise IOError("Mode " + mode + " not supported")
self.fileobj = fileobj
self.offset = 0
self.mtime = mtime
if self.mode == WRITE:
self._write_gzip_header()
@property
def filename(self):
import warnings
warnings.warn("use the name attribute", DeprecationWarning, 2)
if self.mode == WRITE and self.name[-3:] != ".gz":
return self.name + ".gz"
return self.name
def __repr__(self):
fileobj = self.fileobj
if isinstance(fileobj, _PaddedFile):
fileobj = fileobj.file
s = repr(fileobj)
return '<gzip ' + s[1:-1] + ' ' + hex(id(self)) + '>'
def _init_write(self, filename):
self.name = filename
self.crc = zlib.crc32(b"") & 0xffffffff
self.size = 0
self.writebuf = []
self.bufsize = 0
def _write_gzip_header(self):
self.fileobj.write(b'\037\213') # magic header
self.fileobj.write(b'\010') # compression method
try:
# RFC 1952 requires the FNAME field to be Latin-1. Do not
# include filenames that cannot be represented that way.
fname = os.path.basename(self.name)
fname = fname.encode('latin-1')
if fname.endswith(b'.gz'):
fname = fname[:-3]
except UnicodeEncodeError:
fname = b''
flags = 0
if fname:
flags = FNAME
self.fileobj.write(chr(flags).encode('latin-1'))
mtime = self.mtime
if mtime is None:
mtime = time.time()
write32u(self.fileobj, int(mtime))
self.fileobj.write(b'\002')
self.fileobj.write(b'\377')
if fname:
self.fileobj.write(fname + b'\000')
def _init_read(self):
self.crc = zlib.crc32(b"") & 0xffffffff
self.size = 0
def _read_gzip_header(self):
magic = self.fileobj.read(2)
if magic == b'':
raise EOFError("Reached EOF")
if magic != b'\037\213':
raise IOError('Not a gzipped file')
method = ord( self.fileobj.read(1) )
if method != 8:
raise IOError('Unknown compression method')
flag = ord( self.fileobj.read(1) )
self.mtime = read32(self.fileobj)
# extraflag = self.fileobj.read(1)
# os = self.fileobj.read(1)
self.fileobj.read(2)
if flag & FEXTRA:
# Read & discard the extra field, if present
xlen = ord(self.fileobj.read(1))
xlen = xlen + 256*ord(self.fileobj.read(1))
self.fileobj.read(xlen)
if flag & FNAME:
# Read and discard a null-terminated string containing the filename
while True:
s = self.fileobj.read(1)
if not s or s==b'\000':
break
if flag & FCOMMENT:
# Read and discard a null-terminated string containing a comment
while True:
s = self.fileobj.read(1)
if not s or s==b'\000':
break
if flag & FHCRC:
self.fileobj.read(2) # Read & discard the 16-bit header CRC
unused = self.fileobj.unused()
if unused:
uncompress = self.decompress.decompress(unused)
self._add_read_data(uncompress)
def write(self,data):
if self.mode != WRITE:
import errno
raise IOError(errno.EBADF, "write() on read-only GzipFile object")
if self.fileobj is None:
raise ValueError("write() on closed GzipFile object")
# Convert data type if called by io.BufferedWriter.
if isinstance(data, memoryview):
data = data.tobytes()
if len(data) > 0:
self.size = self.size + len(data)
self.crc = zlib.crc32(data, self.crc) & 0xffffffff
self.fileobj.write( self.compress.compress(data) )
self.offset += len(data)
return len(data)
def read(self, size=-1):
if self.mode != READ:
import errno
raise IOError(errno.EBADF, "read() on write-only GzipFile object")
if self.extrasize <= 0 and self.fileobj is None:
return b''
readsize = 1024
if size < 0: # get the whole thing
try:
while True:
self._read(readsize)
readsize = min(self.max_read_chunk, readsize * 2)
except EOFError:
size = self.extrasize
else: # just get some more of it
try:
while size > self.extrasize:
self._read(readsize)
readsize = min(self.max_read_chunk, readsize * 2)
except EOFError:
if size > self.extrasize:
size = self.extrasize
offset = self.offset - self.extrastart
chunk = self.extrabuf[offset: offset + size]
self.extrasize = self.extrasize - size
self.offset += size
return chunk
def peek(self, n):
if self.mode != READ:
import errno
raise IOError(errno.EBADF, "read() on write-only GzipFile object")
# Do not return ridiculously small buffers
if n < 100:
n = 100
if self.extrasize == 0:
if self.fileobj is None:
return b''
try:
self._read(max(self.max_read_chunk, n))
except EOFError:
pass
offset = self.offset - self.extrastart
remaining = self.extrasize
assert remaining == len(self.extrabuf) - offset
return self.extrabuf[offset:offset + n]
def _unread(self, buf):
self.extrasize = len(buf) + self.extrasize
self.offset -= len(buf)
def _read(self, size=1024):
if self.fileobj is None:
raise EOFError("Reached EOF")
if self._new_member:
# If the _new_member flag is set, we have to
# jump to the next member, if there is one.
self._init_read()
self._read_gzip_header()
self.decompress = zlib.decompressobj(-zlib.MAX_WBITS)
self._new_member = False
# Read a chunk of data from the file
buf = self.fileobj.read(size)
# If the EOF has been reached, flush the decompression object
# and mark this object as finished.
if buf == b"":
uncompress = self.decompress.flush()
# Prepend the already read bytes to the fileobj to they can be
# seen by _read_eof()
self.fileobj.prepend(self.decompress.unused_data, True)
self._read_eof()
self._add_read_data( uncompress )
raise EOFError('Reached EOF')
uncompress = self.decompress.decompress(buf)
self._add_read_data( uncompress )
if self.decompress.unused_data != b"":
# Ending case: we've come to the end of a member in the file,
# so seek back to the start of the unused data, finish up
# this member, and read a new gzip header.
# Prepend the already read bytes to the fileobj to they can be
# seen by _read_eof() and _read_gzip_header()
self.fileobj.prepend(self.decompress.unused_data, True)
# Check the CRC and file size, and set the flag so we read
# a new member on the next call
self._read_eof()
self._new_member = True
def _add_read_data(self, data):
self.crc = zlib.crc32(data, self.crc) & 0xffffffff
offset = self.offset - self.extrastart
self.extrabuf = self.extrabuf[offset:] + data
self.extrasize = self.extrasize + len(data)
self.extrastart = self.offset
self.size = self.size + len(data)
def _read_eof(self):
# We've read to the end of the file
# We check the that the computed CRC and size of the
# uncompressed data matches the stored values. Note that the size
# stored is the true file size mod 2**32.
crc32 = read32(self.fileobj)
isize = read32(self.fileobj) # may exceed 2GB
if crc32 != self.crc:
raise IOError("CRC check failed %s != %s" % (hex(crc32),
hex(self.crc)))
elif isize != (self.size & 0xffffffff):
raise IOError("Incorrect length of data produced")
# Gzip files can be padded with zeroes and still have archives.
# Consume all zero bytes and set the file position to the first
# non-zero byte. See http://www.gzip.org/#faq8
c = b"\x00"
while c == b"\x00":
c = self.fileobj.read(1)
if c:
self.fileobj.prepend(c, True)
@property
def closed(self):
return self.fileobj is None
def close(self):
if self.fileobj is None:
return
if self.mode == WRITE:
self.fileobj.write(self.compress.flush())
write32u(self.fileobj, self.crc)
# self.size may exceed 2GB, or even 4GB
write32u(self.fileobj, self.size & 0xffffffff)
self.fileobj = None
elif self.mode == READ:
self.fileobj = None
if self.myfileobj:
self.myfileobj.close()
self.myfileobj = None
def flush(self,zlib_mode=zlib.Z_SYNC_FLUSH):
if self.mode == WRITE:
# Ensure the compressor's buffer is flushed
self.fileobj.write(self.compress.flush(zlib_mode))
self.fileobj.flush()
def fileno(self):
"""Invoke the underlying file object's fileno() method.
This will raise AttributeError if the underlying file object
doesn't support fileno().
"""
return self.fileobj.fileno()
def rewind(self):
'''Return the uncompressed stream file position indicator to the
beginning of the file'''
if self.mode != READ:
raise IOError("Can't rewind in write mode")
self.fileobj.seek(0)
self._new_member = True
self.extrabuf = b""
self.extrasize = 0
self.extrastart = 0
self.offset = 0
def readable(self):
return self.mode == READ
def writable(self):
return self.mode == WRITE
def seekable(self):
return True
def seek(self, offset, whence=0):
if whence:
if whence == 1:
offset = self.offset + offset
else:
raise ValueError('Seek from end not supported')
if self.mode == WRITE:
if offset < self.offset:
raise IOError('Negative seek in write mode')
count = offset - self.offset
chunk = bytes(1024)
for i in range(count // 1024):
self.write(chunk)
self.write(bytes(count % 1024))
elif self.mode == READ:
if offset < self.offset:
# for negative seek, rewind and do positive seek
self.rewind()
count = offset - self.offset
for i in range(count // 1024):
self.read(1024)
self.read(count % 1024)
return self.offset
def readline(self, size=-1):
if size < 0:
# Shortcut common case - newline found in buffer.
offset = self.offset - self.extrastart
i = self.extrabuf.find(b'\n', offset) + 1
if i > 0:
self.extrasize -= i - offset
self.offset += i - offset
return self.extrabuf[offset: i]
size = sys.maxsize
readsize = self.min_readsize
else:
readsize = size
bufs = []
while size != 0:
c = self.read(readsize)
i = c.find(b'\n')
# We set i=size to break out of the loop under two
# conditions: 1) there's no newline, and the chunk is
# larger than size, or 2) there is a newline, but the
# resulting line would be longer than 'size'.
if (size <= i) or (i == -1 and len(c) > size):
i = size - 1
if i >= 0 or c == b'':
bufs.append(c[:i + 1]) # Add portion of last chunk
self._unread(c[i + 1:]) # Push back rest of chunk
break
# Append chunk to list, decrease 'size',
bufs.append(c)
size = size - len(c)
readsize = min(size, readsize * 2)
if readsize > self.min_readsize:
self.min_readsize = min(readsize, self.min_readsize * 2, 512)
return b''.join(bufs) # Return resulting line
def compress(data, compresslevel=9):
"""Compress data in one shot and return the compressed string.
Optional argument is the compression level, in range of 1-9.
"""
buf = io.BytesIO()
with GzipFile(fileobj=buf, mode='wb', compresslevel=compresslevel) as f:
f.write(data)
return buf.getvalue()
def decompress(data):
"""Decompress a gzip compressed string in one shot.
Return the decompressed string.
"""
with GzipFile(fileobj=io.BytesIO(data)) as f:
return f.read()
def _test():
# Act like gzip; with -d, act like gunzip.
# The input file is not deleted, however, nor are any other gzip
# options or features supported.
args = sys.argv[1:]
decompress = args and args[0] == "-d"
if decompress:
args = args[1:]
if not args:
args = ["-"]
for arg in args:
if decompress:
if arg == "-":
f = GzipFile(filename="", mode="rb", fileobj=sys.stdin.buffer)
g = sys.stdout.buffer
else:
if arg[-3:] != ".gz":
print("filename doesn't end in .gz:", repr(arg))
continue
f = open(arg, "rb")
g = builtins.open(arg[:-3], "wb")
else:
if arg == "-":
f = sys.stdin.buffer
g = GzipFile(filename="", mode="wb", fileobj=sys.stdout.buffer)
else:
f = builtins.open(arg, "rb")
g = open(arg + ".gz", "wb")
while True:
chunk = f.read(1024)
if not chunk:
break
g.write(chunk)
if g is not sys.stdout:
g.close()
if f is not sys.stdin:
f.close()
if __name__ == '__main__':
_test()
|