summaryrefslogtreecommitdiffstats
path: root/Lib/statistics.py
blob: 97f154373dc0b416cd09db629196fa02b9da73e9 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
"""
Basic statistics module.

This module provides functions for calculating statistics of data, including
averages, variance, and standard deviation.

Calculating averages
--------------------

==================  =============================================
Function            Description
==================  =============================================
mean                Arithmetic mean (average) of data.
harmonic_mean       Harmonic mean of data.
median              Median (middle value) of data.
median_low          Low median of data.
median_high         High median of data.
median_grouped      Median, or 50th percentile, of grouped data.
mode                Mode (most common value) of data.
multimode           List of modes (most common values of data)
==================  =============================================

Calculate the arithmetic mean ("the average") of data:

>>> mean([-1.0, 2.5, 3.25, 5.75])
2.625


Calculate the standard median of discrete data:

>>> median([2, 3, 4, 5])
3.5


Calculate the median, or 50th percentile, of data grouped into class intervals
centred on the data values provided. E.g. if your data points are rounded to
the nearest whole number:

>>> median_grouped([2, 2, 3, 3, 3, 4])  #doctest: +ELLIPSIS
2.8333333333...

This should be interpreted in this way: you have two data points in the class
interval 1.5-2.5, three data points in the class interval 2.5-3.5, and one in
the class interval 3.5-4.5. The median of these data points is 2.8333...


Calculating variability or spread
---------------------------------

==================  =============================================
Function            Description
==================  =============================================
pvariance           Population variance of data.
variance            Sample variance of data.
pstdev              Population standard deviation of data.
stdev               Sample standard deviation of data.
==================  =============================================

Calculate the standard deviation of sample data:

>>> stdev([2.5, 3.25, 5.5, 11.25, 11.75])  #doctest: +ELLIPSIS
4.38961843444...

If you have previously calculated the mean, you can pass it as the optional
second argument to the four "spread" functions to avoid recalculating it:

>>> data = [1, 2, 2, 4, 4, 4, 5, 6]
>>> mu = mean(data)
>>> pvariance(data, mu)
2.5


Exceptions
----------

A single exception is defined: StatisticsError is a subclass of ValueError.

"""

__all__ = [ 'StatisticsError', 'NormalDist',
            'pstdev', 'pvariance', 'stdev', 'variance',
            'median',  'median_low', 'median_high', 'median_grouped',
            'mean', 'mode', 'multimode', 'harmonic_mean', 'fmean',
          ]

import math
import numbers
import random

from fractions import Fraction
from decimal import Decimal
from itertools import groupby
from bisect import bisect_left, bisect_right
from math import hypot, sqrt, fabs, exp, erf, tau, log, fsum
from operator import itemgetter
from collections import Counter

# === Exceptions ===

class StatisticsError(ValueError):
    pass


# === Private utilities ===

def _sum(data, start=0):
    """_sum(data [, start]) -> (type, sum, count)

    Return a high-precision sum of the given numeric data as a fraction,
    together with the type to be converted to and the count of items.

    If optional argument ``start`` is given, it is added to the total.
    If ``data`` is empty, ``start`` (defaulting to 0) is returned.


    Examples
    --------

    >>> _sum([3, 2.25, 4.5, -0.5, 1.0], 0.75)
    (<class 'float'>, Fraction(11, 1), 5)

    Some sources of round-off error will be avoided:

    # Built-in sum returns zero.
    >>> _sum([1e50, 1, -1e50] * 1000)
    (<class 'float'>, Fraction(1000, 1), 3000)

    Fractions and Decimals are also supported:

    >>> from fractions import Fraction as F
    >>> _sum([F(2, 3), F(7, 5), F(1, 4), F(5, 6)])
    (<class 'fractions.Fraction'>, Fraction(63, 20), 4)

    >>> from decimal import Decimal as D
    >>> data = [D("0.1375"), D("0.2108"), D("0.3061"), D("0.0419")]
    >>> _sum(data)
    (<class 'decimal.Decimal'>, Fraction(6963, 10000), 4)

    Mixed types are currently treated as an error, except that int is
    allowed.
    """
    count = 0
    n, d = _exact_ratio(start)
    partials = {d: n}
    partials_get = partials.get
    T = _coerce(int, type(start))
    for typ, values in groupby(data, type):
        T = _coerce(T, typ)  # or raise TypeError
        for n,d in map(_exact_ratio, values):
            count += 1
            partials[d] = partials_get(d, 0) + n
    if None in partials:
        # The sum will be a NAN or INF. We can ignore all the finite
        # partials, and just look at this special one.
        total = partials[None]
        assert not _isfinite(total)
    else:
        # Sum all the partial sums using builtin sum.
        # FIXME is this faster if we sum them in order of the denominator?
        total = sum(Fraction(n, d) for d, n in sorted(partials.items()))
    return (T, total, count)


def _isfinite(x):
    try:
        return x.is_finite()  # Likely a Decimal.
    except AttributeError:
        return math.isfinite(x)  # Coerces to float first.


def _coerce(T, S):
    """Coerce types T and S to a common type, or raise TypeError.

    Coercion rules are currently an implementation detail. See the CoerceTest
    test class in test_statistics for details.
    """
    # See http://bugs.python.org/issue24068.
    assert T is not bool, "initial type T is bool"
    # If the types are the same, no need to coerce anything. Put this
    # first, so that the usual case (no coercion needed) happens as soon
    # as possible.
    if T is S:  return T
    # Mixed int & other coerce to the other type.
    if S is int or S is bool:  return T
    if T is int:  return S
    # If one is a (strict) subclass of the other, coerce to the subclass.
    if issubclass(S, T):  return S
    if issubclass(T, S):  return T
    # Ints coerce to the other type.
    if issubclass(T, int):  return S
    if issubclass(S, int):  return T
    # Mixed fraction & float coerces to float (or float subclass).
    if issubclass(T, Fraction) and issubclass(S, float):
        return S
    if issubclass(T, float) and issubclass(S, Fraction):
        return T
    # Any other combination is disallowed.
    msg = "don't know how to coerce %s and %s"
    raise TypeError(msg % (T.__name__, S.__name__))


def _exact_ratio(x):
    """Return Real number x to exact (numerator, denominator) pair.

    >>> _exact_ratio(0.25)
    (1, 4)

    x is expected to be an int, Fraction, Decimal or float.
    """
    try:
        # Optimise the common case of floats. We expect that the most often
        # used numeric type will be builtin floats, so try to make this as
        # fast as possible.
        if type(x) is float or type(x) is Decimal:
            return x.as_integer_ratio()
        try:
            # x may be an int, Fraction, or Integral ABC.
            return (x.numerator, x.denominator)
        except AttributeError:
            try:
                # x may be a float or Decimal subclass.
                return x.as_integer_ratio()
            except AttributeError:
                # Just give up?
                pass
    except (OverflowError, ValueError):
        # float NAN or INF.
        assert not _isfinite(x)
        return (x, None)
    msg = "can't convert type '{}' to numerator/denominator"
    raise TypeError(msg.format(type(x).__name__))


def _convert(value, T):
    """Convert value to given numeric type T."""
    if type(value) is T:
        # This covers the cases where T is Fraction, or where value is
        # a NAN or INF (Decimal or float).
        return value
    if issubclass(T, int) and value.denominator != 1:
        T = float
    try:
        # FIXME: what do we do if this overflows?
        return T(value)
    except TypeError:
        if issubclass(T, Decimal):
            return T(value.numerator)/T(value.denominator)
        else:
            raise


def _find_lteq(a, x):
    'Locate the leftmost value exactly equal to x'
    i = bisect_left(a, x)
    if i != len(a) and a[i] == x:
        return i
    raise ValueError


def _find_rteq(a, l, x):
    'Locate the rightmost value exactly equal to x'
    i = bisect_right(a, x, lo=l)
    if i != (len(a)+1) and a[i-1] == x:
        return i-1
    raise ValueError


def _fail_neg(values, errmsg='negative value'):
    """Iterate over values, failing if any are less than zero."""
    for x in values:
        if x < 0:
            raise StatisticsError(errmsg)
        yield x


# === Measures of central tendency (averages) ===

def mean(data):
    """Return the sample arithmetic mean of data.

    >>> mean([1, 2, 3, 4, 4])
    2.8

    >>> from fractions import Fraction as F
    >>> mean([F(3, 7), F(1, 21), F(5, 3), F(1, 3)])
    Fraction(13, 21)

    >>> from decimal import Decimal as D
    >>> mean([D("0.5"), D("0.75"), D("0.625"), D("0.375")])
    Decimal('0.5625')

    If ``data`` is empty, StatisticsError will be raised.
    """
    if iter(data) is data:
        data = list(data)
    n = len(data)
    if n < 1:
        raise StatisticsError('mean requires at least one data point')
    T, total, count = _sum(data)
    assert count == n
    return _convert(total/n, T)

def fmean(data):
    """ Convert data to floats and compute the arithmetic mean.

    This runs faster than the mean() function and it always returns a float.
    The result is highly accurate but not as perfect as mean().
    If the input dataset is empty, it raises a StatisticsError.

    >>> fmean([3.5, 4.0, 5.25])
    4.25

    """
    try:
        n = len(data)
    except TypeError:
        # Handle iterators that do not define __len__().
        n = 0
        def count(x):
            nonlocal n
            n += 1
            return x
        total = fsum(map(count, data))
    else:
        total = fsum(data)
    try:
        return total / n
    except ZeroDivisionError:
        raise StatisticsError('fmean requires at least one data point') from None

def harmonic_mean(data):
    """Return the harmonic mean of data.

    The harmonic mean, sometimes called the subcontrary mean, is the
    reciprocal of the arithmetic mean of the reciprocals of the data,
    and is often appropriate when averaging quantities which are rates
    or ratios, for example speeds. Example:

    Suppose an investor purchases an equal value of shares in each of
    three companies, with P/E (price/earning) ratios of 2.5, 3 and 10.
    What is the average P/E ratio for the investor's portfolio?

    >>> harmonic_mean([2.5, 3, 10])  # For an equal investment portfolio.
    3.6

    Using the arithmetic mean would give an average of about 5.167, which
    is too high.

    If ``data`` is empty, or any element is less than zero,
    ``harmonic_mean`` will raise ``StatisticsError``.
    """
    # For a justification for using harmonic mean for P/E ratios, see
    # http://fixthepitch.pellucid.com/comps-analysis-the-missing-harmony-of-summary-statistics/
    # http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2621087
    if iter(data) is data:
        data = list(data)
    errmsg = 'harmonic mean does not support negative values'
    n = len(data)
    if n < 1:
        raise StatisticsError('harmonic_mean requires at least one data point')
    elif n == 1:
        x = data[0]
        if isinstance(x, (numbers.Real, Decimal)):
            if x < 0:
                raise StatisticsError(errmsg)
            return x
        else:
            raise TypeError('unsupported type')
    try:
        T, total, count = _sum(1/x for x in _fail_neg(data, errmsg))
    except ZeroDivisionError:
        return 0
    assert count == n
    return _convert(n/total, T)


# FIXME: investigate ways to calculate medians without sorting? Quickselect?
def median(data):
    """Return the median (middle value) of numeric data.

    When the number of data points is odd, return the middle data point.
    When the number of data points is even, the median is interpolated by
    taking the average of the two middle values:

    >>> median([1, 3, 5])
    3
    >>> median([1, 3, 5, 7])
    4.0

    """
    data = sorted(data)
    n = len(data)
    if n == 0:
        raise StatisticsError("no median for empty data")
    if n%2 == 1:
        return data[n//2]
    else:
        i = n//2
        return (data[i - 1] + data[i])/2


def median_low(data):
    """Return the low median of numeric data.

    When the number of data points is odd, the middle value is returned.
    When it is even, the smaller of the two middle values is returned.

    >>> median_low([1, 3, 5])
    3
    >>> median_low([1, 3, 5, 7])
    3

    """
    data = sorted(data)
    n = len(data)
    if n == 0:
        raise StatisticsError("no median for empty data")
    if n%2 == 1:
        return data[n//2]
    else:
        return data[n//2 - 1]


def median_high(data):
    """Return the high median of data.

    When the number of data points is odd, the middle value is returned.
    When it is even, the larger of the two middle values is returned.

    >>> median_high([1, 3, 5])
    3
    >>> median_high([1, 3, 5, 7])
    5

    """
    data = sorted(data)
    n = len(data)
    if n == 0:
        raise StatisticsError("no median for empty data")
    return data[n//2]


def median_grouped(data, interval=1):
    """Return the 50th percentile (median) of grouped continuous data.

    >>> median_grouped([1, 2, 2, 3, 4, 4, 4, 4, 4, 5])
    3.7
    >>> median_grouped([52, 52, 53, 54])
    52.5

    This calculates the median as the 50th percentile, and should be
    used when your data is continuous and grouped. In the above example,
    the values 1, 2, 3, etc. actually represent the midpoint of classes
    0.5-1.5, 1.5-2.5, 2.5-3.5, etc. The middle value falls somewhere in
    class 3.5-4.5, and interpolation is used to estimate it.

    Optional argument ``interval`` represents the class interval, and
    defaults to 1. Changing the class interval naturally will change the
    interpolated 50th percentile value:

    >>> median_grouped([1, 3, 3, 5, 7], interval=1)
    3.25
    >>> median_grouped([1, 3, 3, 5, 7], interval=2)
    3.5

    This function does not check whether the data points are at least
    ``interval`` apart.
    """
    data = sorted(data)
    n = len(data)
    if n == 0:
        raise StatisticsError("no median for empty data")
    elif n == 1:
        return data[0]
    # Find the value at the midpoint. Remember this corresponds to the
    # centre of the class interval.
    x = data[n//2]
    for obj in (x, interval):
        if isinstance(obj, (str, bytes)):
            raise TypeError('expected number but got %r' % obj)
    try:
        L = x - interval/2  # The lower limit of the median interval.
    except TypeError:
        # Mixed type. For now we just coerce to float.
        L = float(x) - float(interval)/2

    # Uses bisection search to search for x in data with log(n) time complexity
    # Find the position of leftmost occurrence of x in data
    l1 = _find_lteq(data, x)
    # Find the position of rightmost occurrence of x in data[l1...len(data)]
    # Assuming always l1 <= l2
    l2 = _find_rteq(data, l1, x)
    cf = l1
    f = l2 - l1 + 1
    return L + interval*(n/2 - cf)/f


def mode(data):
    """Return the most common data point from discrete or nominal data.

    ``mode`` assumes discrete data, and returns a single value. This is the
    standard treatment of the mode as commonly taught in schools:

    >>> mode([1, 1, 2, 3, 3, 3, 3, 4])
    3

    This also works with nominal (non-numeric) data:

    >>> mode(["red", "blue", "blue", "red", "green", "red", "red"])
    'red'

    If there are multiple modes, return the first one encountered.

        >>> mode(['red', 'red', 'green', 'blue', 'blue'])
        'red'

    If *data* is empty, ``mode``, raises StatisticsError.

    """
    data = iter(data)
    try:
        return Counter(data).most_common(1)[0][0]
    except IndexError:
        raise StatisticsError('no mode for empty data') from None


def multimode(data):
    """ Return a list of the most frequently occurring values.

        Will return more than one result if there are multiple modes
        or an empty list if *data* is empty.

        >>> multimode('aabbbbbbbbcc')
        ['b']
        >>> multimode('aabbbbccddddeeffffgg')
        ['b', 'd', 'f']
        >>> multimode('')
        []

    """
    counts = Counter(iter(data)).most_common()
    maxcount, mode_items = next(groupby(counts, key=itemgetter(1)), (0, []))
    return list(map(itemgetter(0), mode_items))


# === Measures of spread ===

# See http://mathworld.wolfram.com/Variance.html
#     http://mathworld.wolfram.com/SampleVariance.html
#     http://en.wikipedia.org/wiki/Algorithms_for_calculating_variance
#
# Under no circumstances use the so-called "computational formula for
# variance", as that is only suitable for hand calculations with a small
# amount of low-precision data. It has terrible numeric properties.
#
# See a comparison of three computational methods here:
# http://www.johndcook.com/blog/2008/09/26/comparing-three-methods-of-computing-standard-deviation/

def _ss(data, c=None):
    """Return sum of square deviations of sequence data.

    If ``c`` is None, the mean is calculated in one pass, and the deviations
    from the mean are calculated in a second pass. Otherwise, deviations are
    calculated from ``c`` as given. Use the second case with care, as it can
    lead to garbage results.
    """
    if c is None:
        c = mean(data)
    T, total, count = _sum((x-c)**2 for x in data)
    # The following sum should mathematically equal zero, but due to rounding
    # error may not.
    U, total2, count2 = _sum((x-c) for x in data)
    assert T == U and count == count2
    total -=  total2**2/len(data)
    assert not total < 0, 'negative sum of square deviations: %f' % total
    return (T, total)


def variance(data, xbar=None):
    """Return the sample variance of data.

    data should be an iterable of Real-valued numbers, with at least two
    values. The optional argument xbar, if given, should be the mean of
    the data. If it is missing or None, the mean is automatically calculated.

    Use this function when your data is a sample from a population. To
    calculate the variance from the entire population, see ``pvariance``.

    Examples:

    >>> data = [2.75, 1.75, 1.25, 0.25, 0.5, 1.25, 3.5]
    >>> variance(data)
    1.3720238095238095

    If you have already calculated the mean of your data, you can pass it as
    the optional second argument ``xbar`` to avoid recalculating it:

    >>> m = mean(data)
    >>> variance(data, m)
    1.3720238095238095

    This function does not check that ``xbar`` is actually the mean of
    ``data``. Giving arbitrary values for ``xbar`` may lead to invalid or
    impossible results.

    Decimals and Fractions are supported:

    >>> from decimal import Decimal as D
    >>> variance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
    Decimal('31.01875')

    >>> from fractions import Fraction as F
    >>> variance([F(1, 6), F(1, 2), F(5, 3)])
    Fraction(67, 108)

    """
    if iter(data) is data:
        data = list(data)
    n = len(data)
    if n < 2:
        raise StatisticsError('variance requires at least two data points')
    T, ss = _ss(data, xbar)
    return _convert(ss/(n-1), T)


def pvariance(data, mu=None):
    """Return the population variance of ``data``.

    data should be an iterable of Real-valued numbers, with at least one
    value. The optional argument mu, if given, should be the mean of
    the data. If it is missing or None, the mean is automatically calculated.

    Use this function to calculate the variance from the entire population.
    To estimate the variance from a sample, the ``variance`` function is
    usually a better choice.

    Examples:

    >>> data = [0.0, 0.25, 0.25, 1.25, 1.5, 1.75, 2.75, 3.25]
    >>> pvariance(data)
    1.25

    If you have already calculated the mean of the data, you can pass it as
    the optional second argument to avoid recalculating it:

    >>> mu = mean(data)
    >>> pvariance(data, mu)
    1.25

    This function does not check that ``mu`` is actually the mean of ``data``.
    Giving arbitrary values for ``mu`` may lead to invalid or impossible
    results.

    Decimals and Fractions are supported:

    >>> from decimal import Decimal as D
    >>> pvariance([D("27.5"), D("30.25"), D("30.25"), D("34.5"), D("41.75")])
    Decimal('24.815')

    >>> from fractions import Fraction as F
    >>> pvariance([F(1, 4), F(5, 4), F(1, 2)])
    Fraction(13, 72)

    """
    if iter(data) is data:
        data = list(data)
    n = len(data)
    if n < 1:
        raise StatisticsError('pvariance requires at least one data point')
    T, ss = _ss(data, mu)
    return _convert(ss/n, T)


def stdev(data, xbar=None):
    """Return the square root of the sample variance.

    See ``variance`` for arguments and other details.

    >>> stdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
    1.0810874155219827

    """
    var = variance(data, xbar)
    try:
        return var.sqrt()
    except AttributeError:
        return math.sqrt(var)


def pstdev(data, mu=None):
    """Return the square root of the population variance.

    See ``pvariance`` for arguments and other details.

    >>> pstdev([1.5, 2.5, 2.5, 2.75, 3.25, 4.75])
    0.986893273527251

    """
    var = pvariance(data, mu)
    try:
        return var.sqrt()
    except AttributeError:
        return math.sqrt(var)

## Normal Distribution #####################################################

class NormalDist:
    'Normal distribution of a random variable'
    # https://en.wikipedia.org/wiki/Normal_distribution
    # https://en.wikipedia.org/wiki/Variance#Properties

    __slots__ = ('mu', 'sigma')

    def __init__(self, mu=0.0, sigma=1.0):
        'NormalDist where mu is the mean and sigma is the standard deviation'
        if sigma < 0.0:
            raise StatisticsError('sigma must be non-negative')
        self.mu = mu
        self.sigma = sigma

    @classmethod
    def from_samples(cls, data):
        'Make a normal distribution instance from sample data'
        if not isinstance(data, (list, tuple)):
            data = list(data)
        xbar = fmean(data)
        return cls(xbar, stdev(data, xbar))

    def samples(self, n, seed=None):
        'Generate *n* samples for a given mean and standard deviation'
        gauss = random.gauss if seed is None else random.Random(seed).gauss
        mu, sigma = self.mu, self.sigma
        return [gauss(mu, sigma) for i in range(n)]

    def pdf(self, x):
        'Probability density function:  P(x <= X < x+dx) / dx'
        variance = self.sigma ** 2.0
        if not variance:
            raise StatisticsError('pdf() not defined when sigma is zero')
        return exp((x - self.mu)**2.0 / (-2.0*variance)) / sqrt(tau * variance)

    def cdf(self, x):
        'Cumulative distribution function:  P(X <= x)'
        if not self.sigma:
            raise StatisticsError('cdf() not defined when sigma is zero')
        return 0.5 * (1.0 + erf((x - self.mu) / (self.sigma * sqrt(2.0))))

    def overlap(self, other):
        '''Compute the overlapping coefficient (OVL) between two normal distributions.

        Measures the agreement between two normal probability distributions.
        Returns a value between 0.0 and 1.0 giving the overlapping area in
        the two underlying probability density functions.

            >>> N1 = NormalDist(2.4, 1.6)
            >>> N2 = NormalDist(3.2, 2.0)
            >>> N1.overlap(N2)
            0.8035050657330205

        '''
        # See: "The overlapping coefficient as a measure of agreement between
        # probability distributions and point estimation of the overlap of two
        # normal densities" -- Henry F. Inman and Edwin L. Bradley Jr
        # http://dx.doi.org/10.1080/03610928908830127
        if not isinstance(other, NormalDist):
            raise TypeError('Expected another NormalDist instance')
        X, Y = self, other
        if (Y.sigma, Y.mu) < (X.sigma, X.mu):   # sort to assure commutativity
            X, Y = Y, X
        X_var, Y_var = X.variance, Y.variance
        if not X_var or not Y_var:
            raise StatisticsError('overlap() not defined when sigma is zero')
        dv = Y_var - X_var
        dm = fabs(Y.mu - X.mu)
        if not dv:
            return 2.0 * NormalDist(dm, 2.0 * X.sigma).cdf(0)
        a = X.mu * Y_var - Y.mu * X_var
        b = X.sigma * Y.sigma * sqrt(dm**2.0 + dv * log(Y_var / X_var))
        x1 = (a + b) / dv
        x2 = (a - b) / dv
        return 1.0 - (fabs(Y.cdf(x1) - X.cdf(x1)) + fabs(Y.cdf(x2) - X.cdf(x2)))

    @property
    def mean(self):
        'Arithmetic mean of the normal distribution'
        return self.mu

    @property
    def stdev(self):
        'Standard deviation of the normal distribution'
        return self.sigma

    @property
    def variance(self):
        'Square of the standard deviation'
        return self.sigma ** 2.0

    def __add__(x1, x2):
        if isinstance(x2, NormalDist):
            return NormalDist(x1.mu + x2.mu, hypot(x1.sigma, x2.sigma))
        return NormalDist(x1.mu + x2, x1.sigma)

    def __sub__(x1, x2):
        if isinstance(x2, NormalDist):
            return NormalDist(x1.mu - x2.mu, hypot(x1.sigma, x2.sigma))
        return NormalDist(x1.mu - x2, x1.sigma)

    def __mul__(x1, x2):
        return NormalDist(x1.mu * x2, x1.sigma * fabs(x2))

    def __truediv__(x1, x2):
        return NormalDist(x1.mu / x2, x1.sigma / fabs(x2))

    def __pos__(x1):
        return NormalDist(x1.mu, x1.sigma)

    def __neg__(x1):
        return NormalDist(-x1.mu, x1.sigma)

    __radd__ = __add__

    def __rsub__(x1, x2):
        return -(x1 - x2)

    __rmul__ = __mul__

    def __eq__(x1, x2):
        if not isinstance(x2, NormalDist):
            return NotImplemented
        return (x1.mu, x2.sigma) == (x2.mu, x2.sigma)

    def __repr__(self):
        return f'{type(self).__name__}(mu={self.mu!r}, sigma={self.sigma!r})'


if __name__ == '__main__':

    # Show math operations computed analytically in comparsion
    # to a monte carlo simulation of the same operations

    from math import isclose
    from operator import add, sub, mul, truediv
    from itertools import repeat
    import doctest

    g1 = NormalDist(10, 20)
    g2 = NormalDist(-5, 25)

    # Test scaling by a constant
    assert (g1 * 5 / 5).mu == g1.mu
    assert (g1 * 5 / 5).sigma == g1.sigma

    n = 100_000
    G1 = g1.samples(n)
    G2 = g2.samples(n)

    for func in (add, sub):
        print(f'\nTest {func.__name__} with another NormalDist:')
        print(func(g1, g2))
        print(NormalDist.from_samples(map(func, G1, G2)))

    const = 11
    for func in (add, sub, mul, truediv):
        print(f'\nTest {func.__name__} with a constant:')
        print(func(g1, const))
        print(NormalDist.from_samples(map(func, G1, repeat(const))))

    const = 19
    for func in (add, sub, mul):
        print(f'\nTest constant with {func.__name__}:')
        print(func(const, g1))
        print(NormalDist.from_samples(map(func, repeat(const), G1)))

    def assert_close(G1, G2):
        assert isclose(G1.mu, G1.mu, rel_tol=0.01), (G1, G2)
        assert isclose(G1.sigma, G2.sigma, rel_tol=0.01), (G1, G2)

    X = NormalDist(-105, 73)
    Y = NormalDist(31, 47)
    s = 32.75
    n = 100_000

    S = NormalDist.from_samples([x + s for x in X.samples(n)])
    assert_close(X + s, S)

    S = NormalDist.from_samples([x - s for x in X.samples(n)])
    assert_close(X - s, S)

    S = NormalDist.from_samples([x * s for x in X.samples(n)])
    assert_close(X * s, S)

    S = NormalDist.from_samples([x / s for x in X.samples(n)])
    assert_close(X / s, S)

    S = NormalDist.from_samples([x + y for x, y in zip(X.samples(n),
                                                       Y.samples(n))])
    assert_close(X + Y, S)

    S = NormalDist.from_samples([x - y for x, y in zip(X.samples(n),
                                                       Y.samples(n))])
    assert_close(X - Y, S)

    print(doctest.testmod())