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authorjhendersonHDF <jhenderson@hdfgroup.org>2023-11-15 14:20:50 (GMT)
committerGitHub <noreply@github.com>2023-11-15 14:20:50 (GMT)
commitc779464bfe3dabd767144526a868a5b06538161f (patch)
tree24dbf660c97b36d8634ce2cd8440cb2b61e3bcb3 /.github
parente807dee0fd6c007d7c41327c1ed0e8f5bc617f72 (diff)
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Add GitHub actions for testing VOL connectors (#3849)
* Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable * Add initial API test workflow * Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API * Add CMake variable to allow specifying a VOL connector's package name * Remove call to MPI_Init in serial API tests While previously necessary, it now interferes with VOL connectors that may need to be initialized with MPI_THREAD_MULTIPLE
Diffstat (limited to '.github')
-rw-r--r--.github/workflows/vol.yml48
-rw-r--r--.github/workflows/vol_adios2.yml119
-rw-r--r--.github/workflows/vol_async.yml94
-rw-r--r--.github/workflows/vol_cache.yml164
-rw-r--r--.github/workflows/vol_ext_passthru.yml64
-rw-r--r--.github/workflows/vol_log.yml89
-rw-r--r--.github/workflows/vol_rest.yml195
7 files changed, 773 insertions, 0 deletions
diff --git a/.github/workflows/vol.yml b/.github/workflows/vol.yml
new file mode 100644
index 0000000..ac2a9f5
--- /dev/null
+++ b/.github/workflows/vol.yml
@@ -0,0 +1,48 @@
+name: hdf5 VOL connectors CI
+
+# Run VOL connector CI daily at 06:00 CDT (11:00 UTC)
+on:
+ workflow_dispatch:
+ schedule:
+ - cron: "0 11 * * *"
+
+permissions:
+ contents: read
+
+jobs:
+ # Build and test individual VOL connectors by using HDF5's
+ # CMake FetchContent functionality.
+ #hdf5_vol_daos_fetchcontent:
+ # uses: ./.github/workflows/vol_daos.yml
+ # with:
+ # build_mode: "Release"
+
+ hdf5_vol_rest_fetchcontent:
+ uses: ./.github/workflows/vol_rest.yml
+ with:
+ build_mode: "Release"
+
+ hdf5_vol_ext_passthru_fetchcontent:
+ uses: ./.github/workflows/vol_ext_passthru.yml
+ with:
+ build_mode: "Release"
+
+ hdf5_vol_async_fetchcontent:
+ uses: ./.github/workflows/vol_async.yml
+ with:
+ build_mode: "Release"
+
+ hdf5_vol_cache_fetchcontent:
+ uses: ./.github/workflows/vol_cache.yml
+ with:
+ build_mode: "Release"
+
+ hdf5_vol_adios2:
+ uses: ./.github/workflows/vol_adios2.yml
+ with:
+ build_mode: "Release"
+
+ hdf5_vol_log:
+ uses: ./.github/workflows/vol_log.yml
+ with:
+ build_mode: "Release"
diff --git a/.github/workflows/vol_adios2.yml b/.github/workflows/vol_adios2.yml
new file mode 100644
index 0000000..35fde5e
--- /dev/null
+++ b/.github/workflows/vol_adios2.yml
@@ -0,0 +1,119 @@
+name: Test HDF5 ADIOS2 VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+env:
+ ADIOS2_COMMIT: 3adf20a929b69c23312a6b5f3cccc49376df77e8
+ ADIOS2_COMMIT_SHORT: 3adf20a
+
+jobs:
+ build_and_test:
+ name: Test HDF5 ADIOS2 VOL connector
+ runs-on: ubuntu-latest
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt update
+ sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ - name: Configure HDF5
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DHDF5_TEST_API_ENABLE_ASYNC:BOOL=ON \
+ -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+ -DHDF5_ENABLE_THREADSAFE:BOOL=ON \
+ -DALLOW_UNSUPPORTED:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build and install HDF5
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+ cmake --install .
+ echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
+ echo "PATH=${{ runner.workspace }}/hdf5_build/bin:${PATH}" >> $GITHUB_ENV
+
+ # Since the HDF5 ADIOS2 VOL connector is part of the ADIOS2 repository,
+ # it is difficult to use CMake's FetchContent functionality to fetch
+ # and build the ADIOS2 connector. Also, since building of ADIOS2 takes
+ # a while, it isn't ideal to have to rebuild it every time we want to
+ # test against changes in HDF5 or the VOL connector. Therefore, just
+ # use a fixed commit for the build of ADIOS2 so we can cache that and
+ # still test the connector against changes in HDF5.
+ - name: Restore ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }}) installation cache
+ id: cache-adios2
+ uses: actions/cache@v3
+ with:
+ path: ${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install
+ key: ${{ runner.os }}-${{ runner.arch }}-adios2-${{ env.ADIOS2_COMMIT }}-${{ inputs.build_mode }}-cache
+
+ - if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
+ name: Checkout ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }})
+ uses: actions/checkout@v4
+ with:
+ repository: ornladios/ADIOS2
+ ref: ${{ env.ADIOS2_COMMIT }}
+ path: adios2
+
+ - if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
+ name: Install ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }})
+ env:
+ CXX: mpic++
+ CC: mpicc
+ run: |
+ mkdir adios2/build
+ cd adios2/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install \
+ -DADIOS2_USE_HDF5:BOOL=ON \
+ -DHDF5_ROOT=${{ runner.workspace }}/hdf5_build/ \
+ ..
+ make -j2
+ make -j2 install
+
+ - name: Cache ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }}) installation
+ uses: actions/cache/save@v3
+ if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
+ with:
+ path: ${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install
+ key: ${{ runner.os }}-${{ runner.arch }}-adios2-${{ env.ADIOS2_COMMIT }}-${{ inputs.build_mode }}-cache
+
+ - name: Set environment variables for tests
+ run: |
+ echo "HDF5_PLUGIN_PATH=${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install/lib" >> $GITHUB_ENV
+ echo "HDF5_VOL_CONNECTOR=ADIOS2_VOL" >> $GITHUB_ENV
+
+ # Skip parallel testing for now as it appears to hang
+ - name: Test HDF5 ADIOS2 VOL connector with HDF5 API tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ # Don't test the ADIOS2 VOL connector with the HDF5 API tests yet,
+ # as it doesn't currently pass all the tests. Leave the step in,
+ # but skip it to leave an indication that this should be re-enabled
+ # in the future.
+ if: false
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "h5_api" -E "parallel" .
diff --git a/.github/workflows/vol_async.yml b/.github/workflows/vol_async.yml
new file mode 100644
index 0000000..bb4c3a1
--- /dev/null
+++ b/.github/workflows/vol_async.yml
@@ -0,0 +1,94 @@
+name: Test HDF5 async VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+jobs:
+ build_and_test:
+ name: Test HDF5 asynchronous I/O VOL connector
+ runs-on: ubuntu-latest
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt update
+ sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ - name: Checkout Argobots
+ uses: actions/checkout@v4
+ with:
+ repository: pmodels/argobots
+ path: abt
+
+ # Argobots builds and installs fairly quickly,
+ # so no caching is currently performed here
+ - name: Install Argobots
+ working-directory: ${{ github.workspace }}/abt
+ run: |
+ ./autogen.sh
+ ./configure --prefix=/usr/local
+ make -j2
+ sudo make -j2 install
+
+ - name: Configure HDF5 with asynchronous I/O VOL connector
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DHDF5_TEST_API_ENABLE_ASYNC:BOOL=ON \
+ -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+ -DHDF5_ENABLE_THREADSAFE:BOOL=ON \
+ -DALLOW_UNSUPPORTED:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ -DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
+ -DHDF5_VOL_URL01:STRING="https://github.com/hpc-io/vol-async.git" \
+ -DHDF5_VOL_VOL-ASYNC_BRANCH:STRING="develop" \
+ -DHDF5_VOL_VOL-ASYNC_NAME:STRING="async under_vol=0\;under_info={}" \
+ -DHDF5_VOL_VOL-ASYNC_TEST_PARALLEL:BOOL=ON \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build HDF5 and asynchronous I/O VOL connector
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+ echo "LD_LIBRARY_PATH=/usr/local/lib:${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
+
+ # Workaround for asynchronous I/O VOL CMake issue
+ - name: Copy testing files
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cp bin/async_test* ./_deps/vol-async-build/test
+
+ - name: Test HDF5 asynchronous I/O VOL connector with external tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "async_test" .
+
+ - name: Test HDF5 asynchronous I/O VOL connector with HDF5 API tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ # Don't test the Async VOL connector with the HDF5 API tests yet,
+ # as it doesn't currently pass all the tests. Leave the step in,
+ # but skip it to leave an indication that this should be re-enabled
+ # in the future.
+ if: false
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "HDF5_VOL_vol-async" .
diff --git a/.github/workflows/vol_cache.yml b/.github/workflows/vol_cache.yml
new file mode 100644
index 0000000..1a8c40c
--- /dev/null
+++ b/.github/workflows/vol_cache.yml
@@ -0,0 +1,164 @@
+name: Test HDF5 cache VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+jobs:
+ build_and_test:
+ strategy:
+ matrix:
+ name:
+ - "Test HDF5 cache VOL connector"
+ - "Test HDF5 cache VOL connector atop async VOL connector"
+ async: [false, true]
+ exclude:
+ - name: "Test HDF5 cache VOL connector"
+ async: true
+
+ - name: "Test HDF5 cache VOL connector atop async VOL connector"
+ async: false
+
+
+ runs-on: ubuntu-latest
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt update
+ sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ - name: Checkout Argobots
+ uses: actions/checkout@v4
+ with:
+ repository: pmodels/argobots
+ path: abt
+
+ # Argobots builds and installs fairly quickly,
+ # so no caching is currently performed here
+ - name: Install Argobots
+ working-directory: ${{ github.workspace }}/abt
+ run: |
+ ./autogen.sh
+ ./configure --prefix=/usr/local
+ make -j2
+ sudo make -j2 install
+
+ - name: Set environment variables for configuration (cache VOL only)
+ run: |
+ echo "HDF5_VOL_CACHE_TEST_NAME=cache_ext config=$GITHUB_WORKSPACE/config1.cfg\;under_vol=0\;under_info={}\;" >> $GITHUB_ENV
+ if: ${{ ! matrix.async }}
+
+ - name: Set environment variables for configuration (cache VOL atop async VOL)
+ run: |
+ echo "HDF5_VOL_CACHE_TEST_NAME=cache_ext config=$GITHUB_WORKSPACE/config1.cfg\;under_vol=512\;under_info={under_vol=0\;under_info={}}\;" >> $GITHUB_ENV
+ if: ${{ matrix.async }}
+
+ # Define ASYNC_INCLUDE_DIR, ASYNC_INCLUDE_DIRS and ASYNC_LIBRARIES to
+ # patch around having the cache VOL find the async VOL when they're built
+ # at the same time. Once the Async and Cache VOLs create CMake .config
+ # files, this should no longer be needed with CMake 3.24 and newer (see
+ # FetchContent's OVERRIDE_FIND_PACKAGE)
+ - name: Configure HDF5 with cache VOL connector
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DHDF5_TEST_API_ENABLE_ASYNC:BOOL=ON \
+ -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+ -DHDF5_ENABLE_THREADSAFE:BOOL=ON \
+ -DALLOW_UNSUPPORTED:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ -DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
+ -DHDF5_VOL_URL01:STRING="https://github.com/hpc-io/vol-async.git" \
+ -DHDF5_VOL_VOL-ASYNC_BRANCH:STRING="develop" \
+ -DHDF5_VOL_VOL-ASYNC_NAME:STRING="async under_vol=0\;under_info={}" \
+ -DHDF5_VOL_VOL-ASYNC_TEST_PARALLEL:BOOL=ON \
+ -DHDF5_VOL_URL02:STRING="https://github.com/HDFGroup/vol-cache.git" \
+ -DHDF5_VOL_VOL-CACHE_BRANCH:STRING="develop" \
+ -DHDF5_VOL_VOL-CACHE_NAME:STRING="$HDF5_VOL_CACHE_TEST_NAME" \
+ -DHDF5_VOL_VOL-CACHE_TEST_PARALLEL:BOOL=ON \
+ -DASYNC_INCLUDE_DIR=${{ github.workspace }}/hdf5/build/_deps/vol-async-src/src \
+ -DASYNC_INCLUDE_DIRS=${{ github.workspace }}/hdf5/build/_deps/vol-async-src/src \
+ -DASYNC_LIBRARIES=${{ github.workspace }}/hdf5/build/bin/libasynchdf5.a\;${{ github.workspace }}/hdf5/build/bin/libh5async.so \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build HDF5 and cache VOL connector
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+ echo "LD_LIBRARY_PATH=/usr/local/lib:${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
+
+ - name: Create cache VOL connector configuration file for testing
+ shell: bash
+ run: |
+ mkdir -p $GITHUB_WORKSPACE/scratch
+ touch $GITHUB_WORKSPACE/config1.cfg
+ echo "HDF5_CACHE_STORAGE_SCOPE: LOCAL" >> $GITHUB_WORKSPACE/config1.cfg
+ echo "HDF5_CACHE_STORAGE_PATH: $GITHUB_WORKSPACE/scratch" >> $GITHUB_WORKSPACE/config1.cfg
+ echo "HDF5_CACHE_STORAGE_SIZE: 4294967296" >> $GITHUB_WORKSPACE/config1.cfg
+ echo "HDF5_CACHE_STORAGE_TYPE: SSD" >> $GITHUB_WORKSPACE/config1.cfg
+ echo "HDF5_CACHE_REPLACEMENT_POLICY: LRU" >> $GITHUB_WORKSPACE/config1.cfg
+
+ # Workaround for cache VOL CMake issue
+ - name: Copy testing files
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cp bin/test_file.exe ./_deps/vol-cache-build/tests
+ cp bin/test_group.exe ./_deps/vol-cache-build/tests
+ cp bin/test_dataset.exe ./_deps/vol-cache-build/tests
+ cp bin/test_dataset_async_api.exe ./_deps/vol-cache-build/tests
+ cp bin/test_write_multi.exe ./_deps/vol-cache-build/tests
+ cp bin/test_multdset.exe ./_deps/vol-cache-build/tests
+
+ - name: Set environment variables for external tests (cache VOL only)
+ run: |
+ echo "HDF5_PLUGIN_PATH=${{ github.workspace }}/hdf5/build/bin/" >> $GITHUB_ENV
+ echo "HDF5_VOL_CONNECTOR=cache_ext config=$GITHUB_WORKSPACE/config1.cfg;under_vol=0;under_info={};" >> $GITHUB_ENV
+ if: ${{ ! matrix.async }}
+
+ - name: Set environment variables for external tests (cache VOL atop async VOL)
+ run: |
+ echo "HDF5_PLUGIN_PATH=${{ github.workspace }}/hdf5/build/bin/" >> $GITHUB_ENV
+ echo "HDF5_VOL_CONNECTOR=cache_ext config=$GITHUB_WORKSPACE/config1.cfg;under_vol=512;under_info={under_vol=0;under_info={}};" >> $GITHUB_ENV
+ if: ${{ matrix.async }}
+
+ # Until cache VOL tests are namespaced properly, run them directly
+ - name: Test HDF5 cache VOL connector with external tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_file$" .
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_group$" .
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_dataset$" .
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_dataset_async_api$" .
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_write_multi$" .
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "^test_multdset$" .
+
+ - name: Test HDF5 cache VOL connector with HDF5 API tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ # Don't test the Cache VOL connector with the HDF5 API tests yet
+ # when it's stacked on top of the Async connector, as it doesn't
+ # currently pass all the tests due to the Async connector not passing
+ # all the tests. Leave the step in, but skip it to leave an indication
+ # that this should be re-enabled in the future.
+ if: ${{ ! matrix.async }}
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "HDF5_VOL_vol-cache" .
diff --git a/.github/workflows/vol_ext_passthru.yml b/.github/workflows/vol_ext_passthru.yml
new file mode 100644
index 0000000..337130b
--- /dev/null
+++ b/.github/workflows/vol_ext_passthru.yml
@@ -0,0 +1,64 @@
+name: Test HDF5 external pass-through VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+jobs:
+ build_and_test:
+ name: Test HDF5 external passthrough VOL connector
+ runs-on: ubuntu-latest
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt update
+ sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ - name: Checkout vol-external-passthrough
+ uses: actions/checkout@v4
+ with:
+ repository: hpc-io/vol-external-passthrough
+ path: vol-external-passthrough
+
+ - name: Configure HDF5 with external passthrough VOL connector
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ -DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
+ -DHDF5_VOL_URL01:STRING="https://github.com/hpc-io/vol-external-passthrough.git" \
+ -DHDF5_VOL_VOL-EXTERNAL-PASSTHROUGH_BRANCH:STRING="develop" \
+ -DHDF5_VOL_VOL-EXTERNAL-PASSTHROUGH_NAME:STRING="pass_through_ext under_vol=0\;under_info={}\;" \
+ -DHDF5_VOL_VOL-EXTERNAL-PASSTHROUGH_TEST_PARALLEL:BOOL=ON \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build HDF5 and external passthrough VOL connector
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+
+ - name: Test HDF5 external passthrough VOL connector with HDF5 API tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "HDF5_VOL_vol-external-passthrough" .
diff --git a/.github/workflows/vol_log.yml b/.github/workflows/vol_log.yml
new file mode 100644
index 0000000..0a35578
--- /dev/null
+++ b/.github/workflows/vol_log.yml
@@ -0,0 +1,89 @@
+name: Test HDF5 Log-based VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+jobs:
+ build_and_test:
+ name: Test HDF5 Log-based VOL connector
+ runs-on: ubuntu-latest
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt update
+ sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev zlib1g-dev
+ #mpich
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ # Log-based VOL currently doesn't have CMake support
+ - name: Configure HDF5
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DHDF5_TEST_API_ENABLE_ASYNC:BOOL=ON \
+ -DHDF5_ENABLE_PARALLEL:BOOL=ON \
+ -DHDF5_ENABLE_THREADSAFE:BOOL=ON \
+ -DALLOW_UNSUPPORTED:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build and install HDF5
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+ cmake --install .
+ echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
+ echo "PATH=${{ runner.workspace }}/hdf5_build/bin:${PATH}" >> $GITHUB_ENV
+
+ - name: Checkout Log-based VOL
+ uses: actions/checkout@v4
+ with:
+ repository: DataLib-ECP/vol-log-based
+ path: vol-log-based
+
+ - name: Build HDF5 Log-based VOL connector and test with external tests
+ env:
+ CXX: mpic++
+ CC: mpicc
+ LD_LIBRARY_PATH: ${{ runner.workspace }}/hdf5_build/lib
+ run: |
+ cd vol-log-based
+ autoreconf -i
+ ./configure --prefix=${{ runner.workspace }}/vol-log-based-build --with-hdf5=${{ runner.workspace }}/hdf5_build/ --enable-shared --enable-zlib
+ make -j2 && make install
+ export HDF5_PLUGIN_PATH="${{ runner.workspace }}/vol-log-based-build/lib"
+ export HDF5_VOL_CONNECTOR="LOG under_vol=0;under_info={}"
+ make check
+ echo "HDF5_PLUGIN_PATH=${HDF5_PLUGIN_PATH}" >> $GITHUB_ENV
+ echo "HDF5_VOL_CONNECTOR=${HDF5_VOL_CONNECTOR}" >> $GITHUB_ENV
+
+ # Skip parallel testing for now as it appears to hang
+ - name: Test HDF5 Log-based VOL connector with HDF5 API tests
+ working-directory: ${{ github.workspace }}/hdf5/build
+ # Don't test the Log-based VOL connector with the HDF5 API tests yet,
+ # as it doesn't currently pass all the tests. Leave the step in,
+ # but skip it to leave an indication that this should be re-enabled
+ # in the future.
+ if: false
+ run: |
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "h5_api" -E "parallel" .
diff --git a/.github/workflows/vol_rest.yml b/.github/workflows/vol_rest.yml
new file mode 100644
index 0000000..188e80d
--- /dev/null
+++ b/.github/workflows/vol_rest.yml
@@ -0,0 +1,195 @@
+name: Test HDF5 REST VOL
+
+on:
+ workflow_call:
+ inputs:
+ build_mode:
+ description: "CMake Build type"
+ required: true
+ type: string
+
+permissions:
+ contents: read
+
+env:
+ ADMIN_PASSWORD: admin
+ ADMIN_USERNAME: admin
+ USER_NAME: test_user1
+ USER_PASSWORD: test
+ USER2_NAME: test_user2
+ USER2_PASSWORD: test
+ HSDS_USERNAME: test_user1
+ HSDS_PASSWORD: test
+ HSDS_PATH: /home/test_user1/
+ HDF5_API_TEST_PATH_PREFIX: /home/test_user1/
+ HSDS_ENDPOINT: http+unix://%2Ftmp%2Fhs%2Fsn_1.sock
+ HDF5_VOL_CONNECTOR: REST
+ ROOT_DIR: ${{github.workspace}}/hsdsdata
+ BUCKET_NAME: hsdstest
+
+jobs:
+ build_and_test:
+ name: Test HDF5 REST VOL connector
+ runs-on: ubuntu-latest
+ strategy:
+ matrix:
+ python-version: ["3.10"]
+
+ steps:
+ - name: Install dependencies
+ run: |
+ sudo apt-get update
+ sudo apt-get install automake autoconf libtool libtool-bin libcurl4-openssl-dev libyajl-dev
+
+ - name: Checkout HDF5
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hdf5
+ path: hdf5
+
+ - name: Configure HDF5 with REST VOL connector
+ shell: bash
+ run: |
+ mkdir ${{ github.workspace }}/hdf5/build
+ cd ${{ github.workspace }}/hdf5/build
+ cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+ -DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
+ -DBUILD_STATIC_LIBS=OFF \
+ -DHDF5_BUILD_HL_LIB:BOOL=ON \
+ -DHDF5_TEST_API:BOOL=ON \
+ -DALLOW_UNSUPPORTED:BOOL=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+ -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF \
+ -DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
+ -DHDF5_VOL_URL01:STRING="https://github.com/HDFGroup/vol-rest.git" \
+ -DHDF5_VOL_VOL-REST_BRANCH:STRING="master" \
+ -DHDF5_VOL_VOL-REST_NAME:STRING="REST" \
+ -DHDF5_VOL_VOL-REST_TEST_PARALLEL:BOOL=OFF \
+ -DHDF5_VOL_REST_ENABLE_EXAMPLES=ON \
+ ${{ github.workspace }}/hdf5
+ cat src/libhdf5.settings
+
+ - name: Build and install HDF5 and REST VOL connector
+ shell: bash
+ working-directory: ${{ github.workspace }}/hdf5/build
+ run: |
+ cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+ cmake --install .
+ echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
+
+ - name: Set up Python ${{ matrix.python-version }}
+ uses: actions/setup-python@v3
+ with:
+ python-version: ${{ matrix.python-version }}
+
+ - name: Checkout HSDS
+ uses: actions/checkout@v4
+ with:
+ repository: HDFGroup/hsds
+ path: ${{github.workspace}}/hsds
+
+ - name: Get HSDS HEAD commit SHA
+ shell: bash
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ export HSDS_COMMIT=`git rev-parse HEAD`
+ export HSDS_COMMIT_SHORT=`git rev-parse --short HEAD`
+ echo "HSDS_COMMIT=${HSDS_COMMIT}" >> $GITHUB_ENV
+ echo "HSDS_COMMIT_SHORT=${HSDS_COMMIT_SHORT}" >> $GITHUB_ENV
+
+ # Note that we don't currently cache HSDS, as we would need
+ # to pick a fixed commit/tag in order to generate a reasonable
+ # key to use for caching/restoring from the cache
+ #- name: Restore HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation cache
+ # id: restore-hsds
+ # uses: actions/cache@v3
+ # with:
+ # path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
+ # key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
+
+ - name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) dependencies
+ shell: bash
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ python -m pip install --upgrade pip
+ python -m pip install pytest
+ if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+
+ - name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) package
+ #if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
+ shell: bash
+ run: |
+ cd ${{github.workspace}}/hsds
+ pip install -e .
+
+ #- name: Cache HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation
+ # uses: actions/cache/save@v3
+ # if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
+ # with:
+ # path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
+ # key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
+
+ - name: Run HSDS unit tests
+ shell: bash
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ pytest
+
+ - name: Start HSDS
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ mkdir ${{github.workspace}}/hsdsdata &&
+ mkdir ${{github.workspace}}/hsdsdata/hsdstest &&
+ cp admin/config/groups.default admin/config/groups.txt &&
+ cp admin/config/passwd.default admin/config/passwd.txt &&
+ cp admin/config/groups.default admin/config/groups.txt &&
+ cp admin/config/passwd.default admin/config/passwd.txt
+ ROOT_DIR=${{github.workspace}}/hsdsdata ./runall.sh --no-docker 1 &
+ sleep 10
+
+ - name: Test HSDS
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ python tests/integ/setup_test.py
+
+ - name: Test HDF5 REST VOL connector with external tests
+ working-directory: ${{github.workspace}}/hdf5/build/
+ run: |
+ sudo \
+ HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
+ HDF5_VOL_CONNECTOR=REST \
+ ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
+ USER_NAME=test_user1 USER_PASSWORD=test \
+ USER2_NAME=test_user2 USER2_PASSWORD=test \
+ HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
+ HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
+ HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
+ ROOT_DIR=${{github.workspace}}/hsdsdata \
+ BUCKET_NAME=hsdstest \
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "test_rest_vol" .
+
+ - name: Test HDF5 REST VOL connector with HDF5 API tests
+ working-directory: ${{github.workspace}}/hdf5/build/
+ # Don't test the REST VOL connector with the HDF5 API tests yet,
+ # as it doesn't currently pass all the tests. Leave the step in,
+ # but skip it to leave an indication that this should be re-enabled
+ # in the future.
+ if: false
+ run: |
+ sudo \
+ HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
+ HDF5_VOL_CONNECTOR=REST \
+ ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
+ USER_NAME=test_user1 USER_PASSWORD=test \
+ USER2_NAME=test_user2 USER2_PASSWORD=test \
+ HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
+ HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
+ HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
+ ROOT_DIR=${{github.workspace}}/hsdsdata \
+ BUCKET_NAME=hsdstest \
+ ctest --build-config ${{ inputs.build_mode }} -VV -R "h5_api" .
+
+ - name: Stop HSDS
+ working-directory: ${{github.workspace}}/hsds
+ run: |
+ ./stopall.sh