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authorDavid Young <dyoung@hdfgroup.org>2020-07-30 23:15:09 (GMT)
committerDavid Young <dyoung@hdfgroup.org>2020-07-30 23:15:09 (GMT)
commit0bb87534a6a78d5a5bddd84b9aa4867826368d8b (patch)
tree830d41498d87478ea8cc22e2f6e36011008e8c6e
parent3e91eeb270efaa2075c80e81895066bccf1b1a47 (diff)
parent88aa0d5c76545eabf08be069a684fd7328eb4185 (diff)
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Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experiment
-rw-r--r--.github/workflows/main.yml4
-rw-r--r--CMakeLists.txt11
-rw-r--r--MANIFEST8
-rw-r--r--config/cmake/HDF5UseFortran.cmake2
-rw-r--r--config/cmake/cacheinit.cmake3
-rw-r--r--config/cmake_ext_mod/ConfigureChecks.cmake1
-rw-r--r--configure.ac11
-rw-r--r--fortran/src/CMakeLists.txt20
-rw-r--r--hl/fortran/src/CMakeLists.txt21
-rw-r--r--hl/tools/gif2h5/hdf2gif.c61
-rw-r--r--hl/tools/h5watch/h5watch.c76
-rw-r--r--java/test/TestH5S.java2
-rw-r--r--release_docs/INSTALL_CMake.txt8
-rw-r--r--release_docs/RELEASE.txt109
-rw-r--r--src/H5Aint.c4
-rw-r--r--src/H5B2pkg.h2
-rw-r--r--src/H5B2private.h2
-rw-r--r--src/H5Bdbg.c204
-rw-r--r--src/H5Bmodule.h2
-rw-r--r--src/H5Bpkg.h2
-rw-r--r--src/H5Bprivate.h4
-rw-r--r--src/H5CXmodule.h2
-rw-r--r--src/H5Cmpio.c256
-rw-r--r--src/H5Dbtree2.c2
-rw-r--r--src/H5Dchunk.c24
-rw-r--r--src/H5Dearray.c398
-rw-r--r--src/H5Dfarray.c180
-rw-r--r--src/H5Dio.c21
-rw-r--r--src/H5Dlayout.c36
-rw-r--r--src/H5Dmodule.h2
-rw-r--r--src/H5Dmpio.c2
-rw-r--r--src/H5Dpkg.h2
-rw-r--r--src/H5Dselect.c2
-rw-r--r--src/H5EAdbg.c108
-rw-r--r--src/H5EAmodule.h2
-rw-r--r--src/H5EApkg.h2
-rw-r--r--src/H5EAprivate.h2
-rw-r--r--src/H5EAsblock.c8
-rw-r--r--src/H5Glink.c8
-rw-r--r--src/H5Gloc.c2
-rw-r--r--src/H5Gname.c23
-rw-r--r--src/H5Gnode.c19
-rw-r--r--src/H5HLmodule.h2
-rw-r--r--src/H5HLpkg.h2
-rw-r--r--src/H5HLprivate.h2
-rw-r--r--src/H5Olink.c19
-rw-r--r--src/H5Pdcpl.c20
-rw-r--r--src/H5Rint.c8
-rw-r--r--src/H5S.c652
-rw-r--r--src/H5Sall.c8
-rw-r--r--src/H5Sdbg.c25
-rw-r--r--src/H5Shyper.c250
-rw-r--r--src/H5Smpio.c32
-rw-r--r--src/H5Snone.c69
-rw-r--r--src/H5Spkg.h6
-rw-r--r--src/H5Spoint.c148
-rw-r--r--src/H5Sprivate.h1
-rw-r--r--src/H5Sselect.c9
-rw-r--r--src/H5Tconv.c20
-rw-r--r--src/H5Tref.c63
-rw-r--r--src/H5Zfletcher32.c2
-rw-r--r--src/H5Ztrans.c47
-rw-r--r--src/H5dbg.c3
-rw-r--r--src/H5timer.c31
-rw-r--r--test/CMakeLists.txt1
-rw-r--r--test/Makefile.am2
-rw-r--r--test/trefer.c270
-rw-r--r--test/tselect.c80
-rw-r--r--test/ttsafe.c1
-rw-r--r--test/ttsafe.h2
-rw-r--r--test/ttsafe_attr_vlen.c176
-rw-r--r--tools/lib/h5diff.c179
-rw-r--r--tools/lib/h5diff.h177
-rw-r--r--tools/lib/h5diff_array.c4439
-rw-r--r--tools/lib/h5diff_attr.c162
-rw-r--r--tools/lib/h5diff_dset.c670
-rw-r--r--tools/lib/h5tools.c140
-rw-r--r--tools/lib/h5tools.h67
-rw-r--r--tools/lib/h5tools_dump.c531
-rw-r--r--tools/lib/h5tools_dump.h80
-rw-r--r--tools/lib/h5tools_str.c84
-rw-r--r--tools/lib/h5tools_str.h5
-rw-r--r--tools/lib/io_timer.c1
-rw-r--r--tools/src/h5copy/h5copy.c18
-rw-r--r--tools/src/h5diff/h5diff_common.c342
-rw-r--r--tools/src/h5diff/h5diff_main.c36
-rw-r--r--tools/src/h5dump/h5dump.c101
-rw-r--r--tools/src/h5dump/h5dump.h39
-rw-r--r--tools/src/h5dump/h5dump_ddl.c70
-rw-r--r--tools/src/h5dump/h5dump_extern.h43
-rw-r--r--tools/src/h5dump/h5dump_xml.c30
-rw-r--r--tools/src/h5format_convert/h5format_convert.c178
-rw-r--r--tools/src/h5import/h5import.c4
-rw-r--r--tools/src/h5jam/h5jam.c82
-rw-r--r--tools/src/h5jam/h5unjam.c20
-rw-r--r--tools/src/h5ls/h5ls.c275
-rw-r--r--tools/src/h5repack/h5repack_main.c18
-rw-r--r--tools/src/h5stat/h5stat.c22
-rw-r--r--tools/src/misc/h5clear.c9
-rw-r--r--tools/src/misc/h5mkgrp.c14
-rw-r--r--tools/test/h5diff/CMakeTests.cmake27
-rw-r--r--tools/test/h5diff/h5diffgentest.c117
-rw-r--r--tools/test/h5diff/testfiles/h5diff_10.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_58_ref.txt12
-rw-r--r--tools/test/h5diff/testfiles/h5diff_600.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_603.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_606.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_612.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_615.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_621.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_622.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_623.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_624.txt15
-rw-r--r--tools/test/h5diff/testfiles/h5diff_70.txt32
-rw-r--r--tools/test/h5diff/testfiles/h5diff_700.txt32
-rw-r--r--tools/test/h5diff/testfiles/h5diff_701.txt32
-rw-r--r--tools/test/h5diff/testfiles/h5diff_702.txt32
-rw-r--r--tools/test/h5diff/testfiles/h5diff_703.txt32
-rw-r--r--tools/test/h5diff/testfiles/h5diff_80.txt64
-rw-r--r--tools/test/h5diff/testfiles/h5diff_eps.txt17
-rw-r--r--tools/test/h5diff/testfiles/h5diff_eps1.h5bin0 -> 2272 bytes
-rw-r--r--tools/test/h5diff/testfiles/h5diff_eps2.h5bin0 -> 2272 bytes
-rw-r--r--tools/test/h5diff/testfiles/h5diff_reg.txt9
-rw-r--r--tools/test/h5diff/testfiles/h5diff_strings1.h5 (renamed from tools/test/h5diff/testfiles/diff_strings1.h5)bin4640 -> 4640 bytes
-rw-r--r--tools/test/h5diff/testfiles/h5diff_strings2.h5 (renamed from tools/test/h5diff/testfiles/diff_strings2.h5)bin4640 -> 4640 bytes
-rw-r--r--tools/test/h5diff/testh5diff.sh.in27
-rw-r--r--tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err7
-rw-r--r--tools/test/h5format_convert/testh5fc.sh.in2
-rw-r--r--tools/test/h5jam/tellub.c40
-rw-r--r--tools/testfiles/trefer_attrR.ddl6
-rw-r--r--tools/testfiles/trefer_extR.ddl6
131 files changed, 5975 insertions, 6114 deletions
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index a3fdadb..60e21c7 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -4,8 +4,8 @@ name: hdf5 dev CI
on:
push:
branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ]
-# pull_request:
-# branches: [ develop ]
+ pull_request:
+ branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ]
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
diff --git a/CMakeLists.txt b/CMakeLists.txt
index b559446..ac291fa 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -995,6 +995,17 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
endif ()
endif ()
+ #option (HDF5_INSTALL_MOD_FORTRAN "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" "NO")
+ set (HDF5_INSTALL_MOD_FORTRAN "SHARED" CACHE STRING "Copy FORTRAN mod files to include directory (NO SHARED STATIC)")
+ set_property (CACHE HDF5_INSTALL_MOD_FORTRAN PROPERTY STRINGS NO SHARED STATIC)
+ if (NOT HDF5_INSTALL_MOD_FORTRAN MATCHES "NO")
+ if (NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS)
+ set (HDF5_INSTALL_MOD_FORTRAN "STATIC")
+ elseif (BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS)
+ set (HDF5_INSTALL_MOD_FORTRAN "SHARED")
+ endif ()
+ endif ()
+
add_subdirectory (fortran)
if (HDF5_BUILD_HL_LIB)
if (EXISTS "${HDF5_SOURCE_DIR}/hl/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/fortran")
diff --git a/MANIFEST b/MANIFEST
index a20b248..9720ebf 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1249,6 +1249,7 @@
./test/ttsafe.c
./test/ttsafe.h
./test/ttsafe_acreate.c
+./test/ttsafe_attr_vlen.c
./test/ttsafe_cancel.c
./test/ttsafe_dcreate.c
./test/ttsafe_error.c
@@ -2606,6 +2607,8 @@
./tools/test/h5diff/testfiles/h5diff_dset3.h5
./tools/test/h5diff/testfiles/h5diff_dtypes.h5
./tools/test/h5diff/testfiles/h5diff_empty.h5
+./tools/test/h5diff/testfiles/h5diff_eps1.h5
+./tools/test/h5diff/testfiles/h5diff_eps2.h5
./tools/test/h5diff/testfiles/h5diff_hyper1.h5
./tools/test/h5diff/testfiles/h5diff_hyper2.h5
./tools/test/h5diff/testfiles/h5diff_types.h5
@@ -2634,6 +2637,7 @@
./tools/test/h5diff/testfiles/h5diff_dset_zero_dim_size1.h5
./tools/test/h5diff/testfiles/h5diff_dset_zero_dim_size2.h5
./tools/test/h5diff/testfiles/h5diff_enum_invalid_values.h5
+./tools/test/h5diff/testfiles/h5diff_eps.txt
./tools/test/h5diff/testfiles/compounds_array_vlen1.h5
./tools/test/h5diff/testfiles/compounds_array_vlen2.h5
./tools/test/h5diff/testfiles/non_comparables1.h5
@@ -2645,8 +2649,8 @@
./tools/test/h5diff/testfiles/h5diff_ud.txt
./tools/test/h5diff/testfiles/h5diff_udfail.err
./tools/test/h5diff/testfiles/h5diff_udfail.txt
-./tools/test/h5diff/testfiles/diff_strings1.h5
-./tools/test/h5diff/testfiles/diff_strings2.h5
+./tools/test/h5diff/testfiles/h5diff_strings1.h5
+./tools/test/h5diff/testfiles/h5diff_strings2.h5
./tools/test/h5diff/testfiles/h5diff_vlstr.txt
#vds
./tools/test/h5diff/testfiles/h5diff_v1.txt
diff --git a/config/cmake/HDF5UseFortran.cmake b/config/cmake/HDF5UseFortran.cmake
index c5d8200..4350b7a 100644
--- a/config/cmake/HDF5UseFortran.cmake
+++ b/config/cmake/HDF5UseFortran.cmake
@@ -435,7 +435,7 @@ set (${HDF_PREFIX}_H5CONFIG_F_RKIND_SIZEOF "INTEGER, DIMENSION(1:num_rkinds) ::
ENABLE_LANGUAGE (C)
if (NOT CMAKE_VERSION VERSION_LESS "3.14.0")
-include (CheckCSourceRuns)
+ include (CheckCSourceRuns)
else ()
#-----------------------------------------------------------------------------
# The provided CMake C macros don't provide a general compile/run function
diff --git a/config/cmake/cacheinit.cmake b/config/cmake/cacheinit.cmake
index 4846997..64e8dcc 100644
--- a/config/cmake/cacheinit.cmake
+++ b/config/cmake/cacheinit.cmake
@@ -23,6 +23,9 @@ set (HDF_PACKAGE_NAMESPACE "hdf5::" CACHE STRING "Name for HDF package namespace
set (HDF5_BUILD_FORTRAN ON CACHE BOOL "Build FORTRAN support" FORCE)
+set (HDF5_INSTALL_MOD_FORTRAN "NO" CACHE STRING "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" FORCE)
+set_property (CACHE HDF5_INSTALL_MOD_FORTRAN PROPERTY STRINGS NO SHARED STATIC)
+
set (HDF5_BUILD_GENERATORS ON CACHE BOOL "Build Test Generators" FORCE)
set (HDF5_ENABLE_Z_LIB_SUPPORT ON CACHE BOOL "Enable Zlib Filters" FORCE)
diff --git a/config/cmake_ext_mod/ConfigureChecks.cmake b/config/cmake_ext_mod/ConfigureChecks.cmake
index 6f5a835..0ddb6d0 100644
--- a/config/cmake_ext_mod/ConfigureChecks.cmake
+++ b/config/cmake_ext_mod/ConfigureChecks.cmake
@@ -679,4 +679,3 @@ endif ()
# the cache value is set in it's config file)
#
set (${HDF_PREFIX}_CONVERT_DENORMAL_FLOAT 1)
-
diff --git a/configure.ac b/configure.ac
index e46475d..a239cd3 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1250,12 +1250,6 @@ case "$host_cpu-$host_vendor-$host_os" in
H5_CPPFLAGS="-D_GNU_SOURCE $H5_CPPFLAGS"
;;
- *solaris*)
- ## Solaris also needs _POSIX_C_SOURCE set correctly to pick up
- ## clock_gettime().
- H5_CPPFLAGS="-D_POSIX_C_SOURCE=200112L $H5_CPPFLAGS"
- H5_CPPFLAGS="-D_GNU_SOURCE $H5_CPPFLAGS"
- ;;
esac
## Need to add the AM_ and H5_ into CFLAGS/CPPFLAGS to make them visible
@@ -1611,7 +1605,10 @@ case "X-$withval" in
if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],,
- [LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset HAVE_SZLIB])
+ [CPPFLAGS="$saved_CPPFLAGS"; AM_CPPFLAGS="$saved_AM_CPPFLAGS"; LDFLAGS="$saved_LDFLAGS"; AM_LDFLAGS="$saved_AM_LDFLAGS"; unset HAVE_SZLIB])
+ if test -z "$HAVE_SZLIB"; then
+ AC_MSG_RESULT([Using SZ_BufftoBuffCompress from libsz in $szlib_lib failed. Szip not enabled.])
+ fi
fi
if test -z "$HAVE_SZLIB" -a -n "$HDF5_CONFIG_ABORT"; then
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index bf2fd84..b1add54 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -412,6 +412,16 @@ if (NOT ONLY_SHARED_LIBS)
COMPONENT
fortheaders
)
+ if (HDF5_INSTALL_MOD_FORTRAN MATCHES "STATIC")
+ install (
+ FILES
+ ${mod_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}
+ COMPONENT
+ fortheaders
+ )
+ endif ()
endif ()
if (BUILD_SHARED_LIBS)
@@ -445,6 +455,16 @@ if (BUILD_SHARED_LIBS)
COMPONENT
fortheaders
)
+ if (HDF5_INSTALL_MOD_FORTRAN MATCHES "SHARED")
+ install (
+ FILES
+ ${modsh_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}
+ COMPONENT
+ fortheaders
+ )
+ endif ()
endif ()
#-----------------------------------------------------------------------------
diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
index 71b9380..d682d5f 100644
--- a/hl/fortran/src/CMakeLists.txt
+++ b/hl/fortran/src/CMakeLists.txt
@@ -234,7 +234,6 @@ if (NOT ONLY_SHARED_LIBS)
${MOD_BUILD_DIR}/h5lt_const.mod
${MOD_BUILD_DIR}/h5im.mod
)
-
install (
FILES
${mod_files}
@@ -243,6 +242,16 @@ if (NOT ONLY_SHARED_LIBS)
COMPONENT
fortheaders
)
+ if (HDF5_INSTALL_MOD_FORTRAN MATCHES "STATIC")
+ install (
+ FILES
+ ${mod_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}
+ COMPONENT
+ fortheaders
+ )
+ endif ()
endif ()
if (BUILD_SHARED_LIBS)
set (modsh_files
@@ -261,6 +270,16 @@ if (BUILD_SHARED_LIBS)
COMPONENT
fortheaders
)
+ if (HDF5_INSTALL_MOD_FORTRAN MATCHES "SHARED")
+ install (
+ FILES
+ ${modsh_files}
+ DESTINATION
+ ${HDF5_INSTALL_INCLUDE_DIR}
+ COMPONENT
+ fortheaders
+ )
+ endif ()
endif ()
#-----------------------------------------------------------------------------
diff --git a/hl/tools/gif2h5/hdf2gif.c b/hl/tools/gif2h5/hdf2gif.c
index 0e2a898..1833c92 100644
--- a/hl/tools/gif2h5/hdf2gif.c
+++ b/hl/tools/gif2h5/hdf2gif.c
@@ -18,8 +18,11 @@
#include "h5tools.h"
#include "h5tools_utils.h"
-#define IMAGE_WIDTH_MAX 65535 /* unsigned 16bits integer */
-#define IMAGE_HEIGHT_MAX 65535 /* unsigned 16bits integer */
+/* Name of tool */
+#define PROGRAMNAME "hdf2gif"
+
+#define IMAGE_WIDTH_MAX 65535 /* unsigned 16bits integer */
+#define IMAGE_HEIGHT_MAX 65535 /* unsigned 16bits integer */
int EndianOrder;
@@ -42,12 +45,17 @@ usage(void)
}
+static void
+leave(int ret)
+{
+ h5tools_close();
+ HDexit(ret);
+}
+
FILE *fpGif = NULL;
int main(int argc , char **argv)
{
GIFBYTE *Image;
- void *edata;
- H5E_auto2_t func;
/* compression structs */
GIFCHAR *HDFName = NULL;
@@ -73,9 +81,8 @@ int main(int argc , char **argv)
char *image_name = NULL;
int idx;
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+ h5tools_setprogname(PROGRAMNAME);
+ h5tools_setstatus(EXIT_SUCCESS);
/* Initialize h5tools lib */
h5tools_init();
@@ -83,8 +90,7 @@ int main(int argc , char **argv)
if ( argv[1] && (strcmp("-V",argv[1])==0) )
{
print_version("gif2h5");
- exit(EXIT_SUCCESS);
-
+ h5tools_setstatus(EXIT_SUCCESS);
}
@@ -92,7 +98,7 @@ int main(int argc , char **argv)
{
/* they didn't supply at least one image -- bail */
usage();
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
}
HDFName = argv[1];
@@ -156,18 +162,18 @@ int main(int argc , char **argv)
goto out;
}
- if (width > IMAGE_WIDTH_MAX || height > IMAGE_HEIGHT_MAX)
+ if (width > IMAGE_WIDTH_MAX || height > IMAGE_HEIGHT_MAX)
{
- fprintf(stderr, "HDF5 image is too large. Limit is %d by %d.\n", IMAGE_WIDTH_MAX, IMAGE_HEIGHT_MAX);
- goto out;
- }
+ fprintf(stderr, "HDF5 image is too large. Limit is %d by %d.\n", IMAGE_WIDTH_MAX, IMAGE_HEIGHT_MAX);
+ goto out;
+ }
- /* tool can handle single plane images only. */
- if (planes > 1)
+ /* tool can handle single plane images only. */
+ if (planes > 1)
{
- fprintf(stderr, "Cannot handle multiple planes image\n");
- goto out;
- }
+ fprintf(stderr, "Cannot handle multiple planes image\n");
+ goto out;
+ }
Image = (GIFBYTE*) malloc( (size_t) width * (size_t) height );
@@ -222,9 +228,9 @@ int main(int argc , char **argv)
numcols = 256;
for (i = 0 ; i < numcols ; i++)
{
- Red[i] = (GIFBYTE)(255 - i);
- Green[i] = (GIFBYTE)(255 - i);
- Blue[i] = (GIFBYTE)(255 - i);
+ Red[i] = (GIFBYTE)(255 - i);
+ Green[i] = (GIFBYTE)(255 - i);
+ Blue[i] = (GIFBYTE)(255 - i);
}
}
else
@@ -257,7 +263,7 @@ int main(int argc , char **argv)
if (j==i)
{
/* wasn't found */
- pc2nc[i] = (GIFBYTE)nc;
+ pc2nc[i] = (GIFBYTE)nc;
r1[nc] = Red[i];
g1[nc] = Green[i];
b1[nc] = Blue[i];
@@ -345,9 +351,7 @@ int main(int argc , char **argv)
if (image_name != NULL)
free(image_name);
- H5Eset_auto2(H5E_DEFAULT, func, edata);
-
- return EXIT_SUCCESS;
+ leave(h5tools_getstatus());
out:
@@ -357,7 +361,6 @@ out:
if (image_name != NULL)
free(image_name);
- H5Eset_auto2(H5E_DEFAULT, func, edata);
-
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ leave(h5tools_getstatus());
}
diff --git a/hl/tools/h5watch/h5watch.c b/hl/tools/h5watch/h5watch.c
index 7ad737c..56f9b63 100644
--- a/hl/tools/h5watch/h5watch.c
+++ b/hl/tools/h5watch/h5watch.c
@@ -821,10 +821,6 @@ main(int argc, const char *argv[])
char drivername[50]; /* VFD name */
char *fname = NULL; /* File name */
char *dname = NULL; /* Dataset name */
- void *edata; /* Error reporting */
- void *tools_edata; /* Error reporting */
- H5E_auto2_t func; /* Error reporting */
- H5E_auto2_t tools_func; /* Error reporting */
char *x; /* Temporary string pointer */
hid_t fid = -1; /* File ID */
hid_t fapl = -1; /* File access property list */
@@ -833,17 +829,9 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* To exit from h5watch for SIGTERM signal */
if(HDsignal(SIGTERM, catch_signal) == SIG_ERR) {
error_msg("An error occurred while setting a signal handler.\n");
@@ -865,6 +853,9 @@ main(int argc, const char *argv[])
leave(EXIT_FAILURE);
}
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* Mostly copied from tools/h5ls coding & modified accordingly */
/*
* [OBJECT] is specified as
@@ -881,18 +872,22 @@ main(int argc, const char *argv[])
* doesn't exist).
*/
if((fname = HDstrdup(argv[opt_ind])) == NULL) {
- error_msg("memory allocation failed (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("memory allocation failed (file %s:line %d)\n", __FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
/* Create a copy of file access property list */
- if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
- return -1;
+ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) {
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
/* Set to use the latest library format */
- if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
- return -1;
+ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) {
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
do {
while(fname && *fname) {
@@ -917,30 +912,37 @@ main(int argc, const char *argv[])
if(fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
- if(fname) HDfree(fname);
- if(fapl >= 0) H5Pclose(fapl);
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
if(!dname) {
error_msg("no dataset specified\n");
h5tools_setstatus(EXIT_FAILURE);
- } else {
+ goto done;
+ }
+ else {
*dname = '/';
x = dname;
if((dname = HDstrdup(dname)) == NULL) {
- error_msg("memory allocation failed (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("memory allocation failed (file %s:line %d)\n", __FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
- } else {
+ goto done;
+ }
+ else {
*x = '\0';
/* Validate dataset */
- if(check_dataset(fid, dname) < 0)
+ if(check_dataset(fid, dname) < 0) {
h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
/* Validate input "fields" */
- else if(g_list_of_fields && *g_list_of_fields)
- if(process_cmpd_fields(fid, dname) < 0)
+ else if(g_list_of_fields && *g_list_of_fields) {
+ if(process_cmpd_fields(fid, dname) < 0) {
h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ }
}
}
@@ -949,15 +951,20 @@ main(int argc, const char *argv[])
if(monitor_dataset(fid, dname) < 0)
h5tools_setstatus(EXIT_FAILURE);
+done:
/* Free spaces */
- if(fname) HDfree(fname);
- if(dname) HDfree(dname);
- if(g_list_of_fields) HDfree(g_list_of_fields);
+ if(fname)
+ HDfree(fname);
+ if(dname)
+ HDfree(dname);
+ if(g_list_of_fields)
+ HDfree(g_list_of_fields);
if(g_listv) {
H5LD_clean_vector(g_listv);
HDfree(g_listv);
}
- if(g_dup_fields) HDfree(g_dup_fields);
+ if(g_dup_fields)
+ HDfree(g_dup_fields);
/* Close the file access property list */
if(fapl >= 0 && H5Pclose(fapl) < 0) {
@@ -966,14 +973,11 @@ main(int argc, const char *argv[])
}
/* Close the file */
- if(H5Fclose(fid) < 0) {
+ if(fid >= 0 && H5Fclose(fid) < 0) {
error_msg("unable to close file\n");
h5tools_setstatus(EXIT_FAILURE);
}
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
-
/* exit */
leave(h5tools_getstatus());
} /* main() */
diff --git a/java/test/TestH5S.java b/java/test/TestH5S.java
index 985342b..97c0b68 100644
--- a/java/test/TestH5S.java
+++ b/java/test/TestH5S.java
@@ -171,7 +171,7 @@ public class TestH5S {
try {
H5.H5Sset_extent_none(H5sid);
read_type = H5.H5Sget_simple_extent_type(H5sid);
- assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NO_CLASS == read_type);
+ assertTrue("H5.H5Sget_simple_extent_type: "+read_type, HDF5Constants.H5S_NULL == read_type);
}
catch (Throwable err) {
err.printStackTrace();
diff --git a/release_docs/INSTALL_CMake.txt b/release_docs/INSTALL_CMake.txt
index 5442f6c..89cd9f8 100644
--- a/release_docs/INSTALL_CMake.txt
+++ b/release_docs/INSTALL_CMake.txt
@@ -624,6 +624,7 @@ The config/cmake/cacheinit.cmake file can override the following values.
---------------- General Build Options ---------------------
BUILD_SHARED_LIBS "Build Shared Libraries" ON
+BUILD_STATIC_LIBS "Build Static Libraries" ON
BUILD_STATIC_EXECS "Build Static Executables" OFF
BUILD_TESTING "Build HDF5 Unit Testing" ON
@@ -636,6 +637,7 @@ HDF5_BUILD_HL_LIB "Build HIGH Level HDF5 Library" ON
HDF5_BUILD_TOOLS "Build HDF5 Tools" ON
---------------- HDF5 Advanced Options ---------------------
+ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF
ALLOW_UNSUPPORTED "Allow unsupported combinations of configure options" OFF
HDF5_EXTERNAL_LIB_PREFIX "Use prefix for custom library naming." ""
HDF5_DISABLE_COMPILER_WARNINGS "Disable compiler warnings" OFF
@@ -676,6 +678,12 @@ if (CMAKE_BUILD_TYPE MATCHES Debug)
HDF5_ENABLE_INSTRUMENT "Instrument The library" OFF
if (HDF5_TEST_VFD)
HDF5_TEST_FHEAP_VFD "Execute fheap test with different VFDs" ON
+if (HDF5_BUILD_FORTRAN)
+ HDF5_INSTALL_MOD_FORTRAN "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" "XX"
+ if (BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED
+ if (BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED
+ if (NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is STATIC
+ if (NOT BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS) default HDF5_INSTALL_MOD_FORTRAN is SHARED
---------------- External Library Options ---------------------
HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT TGZ)" "NO"
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index 665a156..b9641d1 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -48,6 +48,31 @@ New Features
Configuration:
-------------
+ - CMake option to link the generated Fortran MOD files into the include
+ directory.
+
+ The Fortran generation of MOD files by a Fortran compile can produce
+ different binary files between SHARED and STATIC compiles with different
+ compilers and/or different platforms. Note that it has been found that
+ different versions of Fortran compilers will produce incompatible MOD
+ files. Currently, CMake will locate these MOD files in subfolders of
+ the include directory and add that path to the Fortran library target
+ in the CMake config file, which can be used by the CMake find library
+ process. For other build systems using the binary from a CMake install,
+ a new CMake configuration can be used to copy the pre-chosen version
+ of the Fortran MOD files into the install include directory.
+
+ The default will depend on the configuration of
+ BUILD_STATIC_LIBS and BUILD_SHARED_LIBS:
+ YES YES Default to SHARED
+ YES NO Default to STATIC
+ NO YES Default to SHARED
+ NO NO Default to SHARED
+ The defaults can be overriden by setting the config option
+ HDF5_INSTALL_MOD_FORTRAN to one of NO, SHARED, or STATIC
+
+ (ADB - 2020/07/9, HDFFV-11116)
+
- CMake option to use AEC (open source SZip) library instead of SZip
The open source AEC library is a replacement library for SZip. In
@@ -631,6 +656,31 @@ Bug Fixes since HDF5-1.10.3 release
Library
-------
+ - Fixed issues CVE-2018-13870 and CVE-2018-13869
+
+ When a buffer overflow occurred because a name length was corrupted
+ and became very large, h5dump crashed on memory access violation.
+
+ A check for reading pass the end of the buffer was added to multiple
+ locations to prevent the crashes and h5dump now simply fails with an
+ error message when this error condition occurs.
+
+ (BMR - 2020/7/22, HDFFV-11120 and HDFFV-11121)
+
+ - Fixed the segmentation fault when reading attributes with multiple threads
+
+ It was reported that the reading of attributes with variable length string
+ datatype will crash with segmentation fault particularly when the number of
+ threads is high (>16 threads). The problem was due to the file pointer that
+ was set in the variable length string datatype for the attribute. That file
+ pointer was already closed when the attribute was accessed.
+
+ The problem was fixed by setting the file pointer to the current opened file pointer
+ when the attribute was accessed. Similar patch up was done before when reading
+ dataset with variable length string datatype.
+
+ (VC - 2020/07/13, HDFFV-11080)
+
- Fixed CVE-2020-10810
The tool h5clear produced a segfault during an error recovery in
@@ -912,6 +962,21 @@ Bug Fixes since HDF5-1.10.3 release
(DER - 2019/12/09, HDFFV-10945)
+ - H5Sset_extent_none() sets the dataspace class to H5S_NO_CLASS which
+ causes asserts/errors when passed to other dataspace API calls.
+
+ H5S_NO_CLASS is an internal class value that should not have been
+ exposed via a public API call.
+
+ In debug builds of the library, this can cause asserts to trip. In
+ non-debug builds, it will produce normal library errors.
+
+ The new library behavior is for H5Sset_extent_none() to convert
+ the dataspace into one of type H5S_NULL, which is better handled
+ by the library and easier for developers to reason about.
+
+ (DER - 2020/07/27, HDFFV-11027)
+
Java Library:
----------------
@@ -989,7 +1054,43 @@ Bug Fixes since HDF5-1.10.3 release
Tools
-----
- -
+ - The tools library was updated by standardizing the error stack process.
+
+ General sequence is:
+ h5tools_setprogname(PROGRAMNAME);
+ h5tools_setstatus(EXIT_SUCCESS);
+ h5tools_init();
+ ... process the command-line (check for error-stack enable) ...
+ h5tools_error_report();
+ ... (do work) ...
+ h5diff_exit(ret);
+
+ (ADB - 2020/07/20, HDFFV-11066)
+
+ - h5diff fixed a command line parsing error.
+
+ h5diff would ignore the argument to -d (delta) if it is smaller than DBL_EPSILON.
+ The macro H5_DBL_ABS_EQUAL was removed and a direct value comparision was used.
+
+ (ADB - 2020/07/20, HDFFV-10897)
+
+ - h5diff added a command line option to ignore attributes.
+
+ h5diff would ignore all objects with a supplied path if the exclude-path argument is used.
+ Adding the exclude-attribute argument will only eclude attributes, with the supplied path,
+ from comparision.
+
+ (ADB - 2020/07/20, HDFFV-5935)
+
+ - h5diff added another level to the verbose argument to print filenames.
+
+ Added verbose level 3 that is level 2 plus the filenames. The levels are:
+ 0 : Identical to '-v' or '--verbose'
+ 1 : All level 0 information plus one-line attribute status summary
+ 2 : All level 1 information plus extended attribute status report
+ 3 : All level 2 information plus file names
+
+ (ADB - 2020/07/20, HDFFV-10005)
High-Level APIs:
------
@@ -1015,9 +1116,9 @@ Bug Fixes since HDF5-1.10.3 release
-------
- Stopped java/test/junit.sh.in installing libs for testing under ${prefix}
- Lib files needed are now copied to a subdirectory in the java/test
- directory, and on Macs the loader path for libhdf5.xxxs.so is changed
- in the temporary copy of libhdf5_java.dylib.
+ Lib files needed are now copied to a subdirectory in the java/test
+ directory, and on Macs the loader path for libhdf5.xxxs.so is changed
+ in the temporary copy of libhdf5_java.dylib.
(LRK, 2020/7/2, HDFFV-11063)
diff --git a/src/H5Aint.c b/src/H5Aint.c
index 1a74abe..cd0ab80 100644
--- a/src/H5Aint.c
+++ b/src/H5Aint.c
@@ -616,6 +616,10 @@ H5A__read(const H5A_t *attr, const H5T_t *mem_type, void *buf)
HDassert(mem_type);
HDassert(buf);
+ /* Patch the top level file pointer in attr->shared->dt->shared->u.vlen.f if needed */
+ if(H5T_patch_vlen_file(attr->shared->dt, H5F_VOL_OBJ(attr->oloc.file)) < 0 )
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch VL datatype file pointer")
+
/* Create buffer for data to store on disk */
if((snelmts = H5S_GET_EXTENT_NPOINTS(attr->shared->ds)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTCOUNT, FAIL, "dataspace is invalid")
diff --git a/src/H5B2pkg.h b/src/H5B2pkg.h
index 338db5a..7d73752 100644
--- a/src/H5B2pkg.h
+++ b/src/H5B2pkg.h
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Programmer: Quincey Koziol
* Monday, January 31, 2005
*
* Purpose: This file contains declarations which are visible only within
diff --git a/src/H5B2private.h b/src/H5B2private.h
index 0b64381..9303d4f 100644
--- a/src/H5B2private.h
+++ b/src/H5B2private.h
@@ -15,7 +15,7 @@
*
* Created: H5B2private.h
* Jan 31 2005
- * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Quincey Koziol
*
* Purpose: Private header for library accessible B-tree routines.
*
diff --git a/src/H5Bdbg.c b/src/H5Bdbg.c
index 37a94f4..0d0a56d 100644
--- a/src/H5Bdbg.c
+++ b/src/H5Bdbg.c
@@ -13,11 +13,11 @@
/*-------------------------------------------------------------------------
*
- * Created: H5Bdbg.c
- * Dec 11 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Created: H5Bdbg.c
+ * Dec 11 2008
+ * Quincey Koziol
*
- * Purpose: Debugging routines for B-link tree package.
+ * Purpose: Debugging routines for B-link tree package.
*
*-------------------------------------------------------------------------
*/
@@ -32,35 +32,33 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Bpkg.h" /* B-link trees */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5MMprivate.h" /* Memory management */
+#include "H5private.h" /* Generic Functions */
+#include "H5Bpkg.h" /* B-link trees */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5MMprivate.h" /* Memory management */
/*-------------------------------------------------------------------------
- * Function: H5B_debug
+ * Function: H5B_debug
*
- * Purpose: Prints debugging info about a B-tree.
+ * Purpose: Prints debugging info about a B-tree.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
- * matzke@llnl.gov
- * Aug 4 1997
+ * Programmer: Robb Matzke
+ * Aug 4 1997
*
*-------------------------------------------------------------------------
*/
herr_t
-H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
- const H5B_class_t *type, void *udata)
+H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5B_class_t *type, void *udata)
{
- H5B_t *bt = NULL;
- H5UC_t *rc_shared; /* Ref-counted shared info */
+ H5B_t *bt = NULL;
+ H5UC_t *rc_shared; /* Ref-counted shared info */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */
- unsigned u; /* Local index variable */
+ unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -97,55 +95,53 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth,
* Print the values.
*/
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
- "Tree type ID:",
- ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" :
+ "Tree type ID:",
+ ((shared->type->id) == H5B_SNODE_ID ? "H5B_SNODE_ID" :
((shared->type->id) == H5B_CHUNK_ID ? "H5B_CHUNK_ID" : "Unknown!")));
HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth,
- "Size of node:",
- shared->sizeof_rnode);
+ "Size of node:",
+ shared->sizeof_rnode);
HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth,
- "Size of raw (disk) key:",
- shared->sizeof_rkey);
+ "Size of raw (disk) key:",
+ shared->sizeof_rkey);
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
- "Dirty flag:",
- bt->cache_info.is_dirty ? "True" : "False");
+ "Dirty flag:",
+ bt->cache_info.is_dirty ? "True" : "False");
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Level:",
- bt->level);
+ "Level:",
+ bt->level);
HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth,
- "Address of left sibling:",
- bt->left);
+ "Address of left sibling:",
+ bt->left);
HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth,
- "Address of right sibling:",
- bt->right);
+ "Address of right sibling:",
+ bt->right);
HDfprintf(stream, "%*s%-*s %u (%u)\n", indent, "", fwidth,
- "Number of children (max):",
- bt->nchildren, shared->two_k);
+ "Number of children (max):",
+ bt->nchildren, shared->two_k);
/*
* Print the child addresses
*/
for(u = 0; u < bt->nchildren; u++) {
- HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
- HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3),
- "Address:", bt->child[u]);
+ HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
+ HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3),
+ "Address:", bt->child[u]);
/* If there is a key debugging routine, use it to display the left & right keys */
- if(type->debug_key) {
+ if(type->debug_key) {
/* Decode the 'left' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Left Key:");
HDassert(H5B_NKEY(bt,shared,u));
- (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6),
- H5B_NKEY(bt, shared, u), udata);
+ (void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata);
/* Decode the 'right' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Right Key:");
HDassert(H5B_NKEY(bt, shared, u + 1));
- (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6),
- H5B_NKEY(bt, shared, u + 1), udata);
- } /* end if */
+ (void)(type->debug_key)(stream, indent + 6, MAX (0, fwidth - 6), H5B_NKEY(bt, shared, u + 1), udata);
+ } /* end if */
} /* end for */
done:
@@ -157,16 +153,16 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5B__assert
+ * Function: H5B__assert
*
- * Purpose: Verifies that the tree is structured correctly.
+ * Purpose: Verifies that the tree is structured correctly.
*
- * Return: Success: SUCCEED
+ * Return: Success: SUCCEED
*
- * Failure: aborts if something is wrong.
+ * Failure: aborts if something is wrong.
*
- * Programmer: Robb Matzke
- * Tuesday, November 4, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, November 4, 1997
*
*-------------------------------------------------------------------------
*/
@@ -174,20 +170,20 @@ done:
herr_t
H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata)
{
- H5B_t *bt = NULL;
- H5UC_t *rc_shared; /* Ref-counted shared info */
+ H5B_t *bt = NULL;
+ H5UC_t *rc_shared; /* Ref-counted shared info */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_cache_ud_t cache_udata; /* User-data for metadata cache callback */
- int ncell, cmp;
- static int ncalls = 0;
- herr_t status;
+ int ncell, cmp;
+ static int ncalls = 0;
+ herr_t status;
herr_t ret_value = SUCCEED; /* Return value */
/* A queue of child data */
struct child_t {
- haddr_t addr;
- unsigned level;
- struct child_t *next;
+ haddr_t addr;
+ unsigned level;
+ struct child_t *next;
} *head = NULL, *tail = NULL, *prev = NULL, *cur = NULL, *tmp = NULL;
FUNC_ENTER_PACKAGE
@@ -228,60 +224,60 @@ H5B__assert(H5F_t *f, haddr_t addr, const H5B_class_t *type, void *udata)
* test.
*/
for(ncell = 0; cur; ncell++) {
- bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG);
- HDassert(bt);
-
- /* Check node header */
- HDassert(bt->level == cur->level);
- if(cur->next && cur->next->level == bt->level)
- HDassert(H5F_addr_eq(bt->right, cur->next->addr));
- else
- HDassert(!H5F_addr_defined(bt->right));
- if(prev && prev->level == bt->level)
- HDassert(H5F_addr_eq(bt->left, prev->addr));
- else
- HDassert(!H5F_addr_defined(bt->left));
-
- if(cur->level > 0) {
+ bt = (H5B_t *)H5AC_protect(f, H5AC_BT, cur->addr, &cache_udata, H5AC__READ_ONLY_FLAG);
+ HDassert(bt);
+
+ /* Check node header */
+ HDassert(bt->level == cur->level);
+ if(cur->next && cur->next->level == bt->level)
+ HDassert(H5F_addr_eq(bt->right, cur->next->addr));
+ else
+ HDassert(!H5F_addr_defined(bt->right));
+ if(prev && prev->level == bt->level)
+ HDassert(H5F_addr_eq(bt->left, prev->addr));
+ else
+ HDassert(!H5F_addr_defined(bt->left));
+
+ if(cur->level > 0) {
unsigned u;
- for(u = 0; u < bt->nchildren; u++) {
- /*
- * Check that child nodes haven't already been seen. If they
- * have then the tree has a cycle.
- */
- for(tmp = head; tmp; tmp = tmp->next)
- HDassert(H5F_addr_ne(tmp->addr, bt->child[u]));
-
- /* Add the child node to the end of the queue */
- tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t));
- HDassert(tmp);
- tmp->addr = bt->child[u];
- tmp->level = bt->level - 1;
- tail->next = tmp;
- tail = tmp;
-
- /* Check that the keys are monotonically increasing */
- cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1));
- HDassert(cmp < 0);
- } /* end for */
- } /* end if */
-
- /* Release node */
- status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET);
- HDassert(status >= 0);
+ for(u = 0; u < bt->nchildren; u++) {
+ /*
+ * Check that child nodes haven't already been seen. If they
+ * have then the tree has a cycle.
+ */
+ for(tmp = head; tmp; tmp = tmp->next)
+ HDassert(H5F_addr_ne(tmp->addr, bt->child[u]));
+
+ /* Add the child node to the end of the queue */
+ tmp = (struct child_t *)H5MM_calloc(sizeof(struct child_t));
+ HDassert(tmp);
+ tmp->addr = bt->child[u];
+ tmp->level = bt->level - 1;
+ tail->next = tmp;
+ tail = tmp;
+
+ /* Check that the keys are monotonically increasing */
+ cmp = (type->cmp2)(H5B_NKEY(bt, shared, u), udata, H5B_NKEY(bt, shared, u + 1));
+ HDassert(cmp < 0);
+ } /* end for */
+ } /* end if */
+
+ /* Release node */
+ status = H5AC_unprotect(f, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET);
+ HDassert(status >= 0);
bt = NULL; /* Make certain future references will be caught */
- /* Advance current location in queue */
- prev = cur;
- cur = cur->next;
+ /* Advance current location in queue */
+ prev = cur;
+ cur = cur->next;
} /* end for */
/* Free all entries from queue */
while(head) {
- tmp = head->next;
- H5MM_xfree(head);
- head = tmp;
+ tmp = head->next;
+ H5MM_xfree(head);
+ head = tmp;
} /* end while */
done:
diff --git a/src/H5Bmodule.h b/src/H5Bmodule.h
index bc46752..c8e1546 100644
--- a/src/H5Bmodule.h
+++ b/src/H5Bmodule.h
@@ -11,7 +11,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Saturday, September 12, 2015
*
* Purpose: This file contains declarations which define macros for the
diff --git a/src/H5Bpkg.h b/src/H5Bpkg.h
index a451cab..a57584e 100644
--- a/src/H5Bpkg.h
+++ b/src/H5Bpkg.h
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Programmer: Quincey Koziol
* Thursday, May 15, 2003
*
* Purpose: This file contains declarations which are visible only within
diff --git a/src/H5Bprivate.h b/src/H5Bprivate.h
index 5aa3628..55bf5b3 100644
--- a/src/H5Bprivate.h
+++ b/src/H5Bprivate.h
@@ -15,12 +15,10 @@
*
* Created: H5Bprivate.h
* Jul 10 1997
- * Robb Matzke <matzke@llnl.gov>
+ * Robb Matzke
*
* Purpose: Private non-prototype header.
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
diff --git a/src/H5CXmodule.h b/src/H5CXmodule.h
index f6a8f29..186f8aa 100644
--- a/src/H5CXmodule.h
+++ b/src/H5CXmodule.h
@@ -11,7 +11,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@lbl.gov>
+ * Programmer: Quincey Koziol
* Sunday, February 25, 2018
*
* Purpose: This file contains declarations which define macros for the
diff --git a/src/H5Cmpio.c b/src/H5Cmpio.c
index 0ac4c4f..199c494 100644
--- a/src/H5Cmpio.c
+++ b/src/H5Cmpio.c
@@ -18,7 +18,7 @@
* Quincey Koziol
*
* Purpose: Functions in this file implement support for parallel I/O for
- * generic cache code.
+ * generic cache code.
*
*-------------------------------------------------------------------------
*/
@@ -28,20 +28,20 @@
/****************/
#include "H5Cmodule.h" /* This source code file is part of the H5C module */
-#define H5F_FRIEND /*suppress error about including H5Fpkg */
+#define H5F_FRIEND /*suppress error about including H5Fpkg */
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
+#include "H5private.h" /* Generic Functions */
#include "H5ACprivate.h" /* Metadata cache */
-#include "H5Cpkg.h" /* Cache */
+#include "H5Cpkg.h" /* Cache */
#include "H5CXprivate.h" /* API Contexts */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5Fpkg.h" /* Files */
-#include "H5FDprivate.h" /* File drivers */
-#include "H5MMprivate.h" /* Memory management */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Fpkg.h" /* Files */
+#include "H5FDprivate.h" /* File drivers */
+#include "H5MMprivate.h" /* Memory management */
#ifdef H5_HAVE_PARALLEL
@@ -87,74 +87,74 @@ static herr_t H5C__flush_candidates_in_ring(H5F_t *f, H5C_ring_t ring,
*
* Purpose: Apply the supplied candidate list.
*
- * We used to do this by simply having each process write
- * every mpi_size-th entry in the candidate list, starting
- * at index mpi_rank, and mark all the others clean.
+ * We used to do this by simply having each process write
+ * every mpi_size-th entry in the candidate list, starting
+ * at index mpi_rank, and mark all the others clean.
*
- * However, this can cause unnecessary contention in a file
- * system by increasing the number of processes writing to
- * adjacent locations in the HDF5 file.
+ * However, this can cause unnecessary contention in a file
+ * system by increasing the number of processes writing to
+ * adjacent locations in the HDF5 file.
*
- * To attempt to minimize this, we now arange matters such
- * that each process writes n adjacent entries in the
- * candidate list, and marks all others clean. We must do
- * this in such a fashion as to guarantee that each entry
- * on the candidate list is written by exactly one process,
- * and marked clean by all others.
+ * To attempt to minimize this, we now arange matters such
+ * that each process writes n adjacent entries in the
+ * candidate list, and marks all others clean. We must do
+ * this in such a fashion as to guarantee that each entry
+ * on the candidate list is written by exactly one process,
+ * and marked clean by all others.
*
- * To do this, first construct a table mapping mpi_rank
- * to the index of the first entry in the candidate list to
- * be written by the process of that mpi_rank, and then use
- * the table to control which entries are written and which
- * are marked as clean as a function of the mpi_rank.
+ * To do this, first construct a table mapping mpi_rank
+ * to the index of the first entry in the candidate list to
+ * be written by the process of that mpi_rank, and then use
+ * the table to control which entries are written and which
+ * are marked as clean as a function of the mpi_rank.
*
- * Note that the table must be identical on all processes, as
- * all see the same candidate list, mpi_size, and mpi_rank --
- * the inputs used to construct the table.
+ * Note that the table must be identical on all processes, as
+ * all see the same candidate list, mpi_size, and mpi_rank --
+ * the inputs used to construct the table.
*
- * We construct the table as follows. Let:
+ * We construct the table as follows. Let:
*
- * n = num_candidates / mpi_size;
+ * n = num_candidates / mpi_size;
*
- * m = num_candidates % mpi_size;
+ * m = num_candidates % mpi_size;
*
- * Now allocate an array of integers of length mpi_size + 1,
- * and call this array candidate_assignment_table.
+ * Now allocate an array of integers of length mpi_size + 1,
+ * and call this array candidate_assignment_table.
*
- * Conceptually, if the number of candidates is a multiple
- * of the mpi_size, we simply pass through the candidate list
- * and assign n entries to each process to flush, with the
- * index of the first entry to flush in the location in
- * the candidate_assignment_table indicated by the mpi_rank
- * of the process.
+ * Conceptually, if the number of candidates is a multiple
+ * of the mpi_size, we simply pass through the candidate list
+ * and assign n entries to each process to flush, with the
+ * index of the first entry to flush in the location in
+ * the candidate_assignment_table indicated by the mpi_rank
+ * of the process.
*
- * In the more common case in which the candidate list isn't
- * isn't a multiple of the mpi_size, we pretend it is, and
- * give num_candidates % mpi_size processes one extra entry
- * each to make things work out.
+ * In the more common case in which the candidate list isn't
+ * isn't a multiple of the mpi_size, we pretend it is, and
+ * give num_candidates % mpi_size processes one extra entry
+ * each to make things work out.
*
- * Once the table is constructed, we determine the first and
- * last entry this process is to flush as follows:
+ * Once the table is constructed, we determine the first and
+ * last entry this process is to flush as follows:
*
- * first_entry_to_flush = candidate_assignment_table[mpi_rank]
+ * first_entry_to_flush = candidate_assignment_table[mpi_rank]
*
- * last_entry_to_flush =
- * candidate_assignment_table[mpi_rank + 1] - 1;
+ * last_entry_to_flush =
+ * candidate_assignment_table[mpi_rank + 1] - 1;
*
- * With these values determined, we simply scan through the
- * candidate list, marking all entries in the range
- * [first_entry_to_flush, last_entry_to_flush] for flush,
- * and all others to be cleaned.
+ * With these values determined, we simply scan through the
+ * candidate list, marking all entries in the range
+ * [first_entry_to_flush, last_entry_to_flush] for flush,
+ * and all others to be cleaned.
*
- * Finally, we scan the LRU from tail to head, flushing
- * or marking clean the candidate entries as indicated.
- * If necessary, we scan the pinned list as well.
+ * Finally, we scan the LRU from tail to head, flushing
+ * or marking clean the candidate entries as indicated.
+ * If necessary, we scan the pinned list as well.
*
- * Note that this function will fail if any protected or
- * clean entries appear on the candidate list.
+ * Note that this function will fail if any protected or
+ * clean entries appear on the candidate list.
*
- * This function is used in managing sync points, and
- * shouldn't be used elsewhere.
+ * This function is used in managing sync points, and
+ * shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
@@ -176,20 +176,20 @@ H5C_apply_candidate_list(H5F_t * f,
int i;
int m;
unsigned n;
- unsigned first_entry_to_flush;
- unsigned last_entry_to_flush;
- unsigned total_entries_to_clear = 0;
- unsigned total_entries_to_flush = 0;
+ unsigned first_entry_to_flush;
+ unsigned last_entry_to_flush;
+ unsigned total_entries_to_clear = 0;
+ unsigned total_entries_to_flush = 0;
unsigned * candidate_assignment_table = NULL;
unsigned entries_to_flush[H5C_RING_NTYPES];
unsigned entries_to_clear[H5C_RING_NTYPES];
- haddr_t addr;
- H5C_cache_entry_t * entry_ptr = NULL;
+ haddr_t addr;
+ H5C_cache_entry_t * entry_ptr = NULL;
#if H5C_DO_SANITY_CHECKS
- haddr_t last_addr;
+ haddr_t last_addr;
#endif /* H5C_DO_SANITY_CHECKS */
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
- char tbl_buf[1024];
+ char tbl_buf[1024];
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
@@ -413,10 +413,10 @@ done:
* Function: H5C_construct_candidate_list__clean_cache
*
* Purpose: Construct the list of entries that should be flushed to
- * clean all entries in the cache.
+ * clean all entries in the cache.
*
- * This function is used in managing sync points, and
- * shouldn't be used elsewhere.
+ * This function is used in managing sync points, and
+ * shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
@@ -457,7 +457,7 @@ H5C_construct_candidate_list__clean_cache(H5C_t * cache_ptr)
H5C_cache_entry_t *entry_ptr;
unsigned nominated_entries_count = 0;
size_t nominated_entries_size = 0;
- haddr_t nominated_addr;
+ haddr_t nominated_addr;
HDassert( cache_ptr->slist_len > 0 );
@@ -522,10 +522,10 @@ done:
* Function: H5C_construct_candidate_list__min_clean
*
* Purpose: Construct the list of entries that should be flushed to
- * get the cache back within its min clean constraints.
+ * get the cache back within its min clean constraints.
*
- * This function is used in managing sync points, and
- * shouldn't be used elsewhere.
+ * This function is used in managing sync points, and
+ * shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
@@ -582,7 +582,7 @@ H5C_construct_candidate_list__min_clean(H5C_t * cache_ptr)
(nominated_entries_count < cache_ptr->slist_len) &&
(entry_ptr != NULL) &&
(!entry_ptr->flush_me_last)) {
- haddr_t nominated_addr;
+ haddr_t nominated_addr;
HDassert( ! (entry_ptr->is_protected) );
HDassert( ! (entry_ptr->is_read_only) );
@@ -612,24 +612,24 @@ done:
* Function: H5C_mark_entries_as_clean
*
* Purpose: When the H5C code is used to implement the metadata caches
- * in PHDF5, only the cache with MPI_rank 0 is allowed to
- * actually write entries to disk -- all other caches must
- * retain dirty entries until they are advised that the
- * entries are clean.
+ * in PHDF5, only the cache with MPI_rank 0 is allowed to
+ * actually write entries to disk -- all other caches must
+ * retain dirty entries until they are advised that the
+ * entries are clean.
*
- * This function exists to allow the H5C code to receive these
- * notifications.
+ * This function exists to allow the H5C code to receive these
+ * notifications.
*
- * The function receives a list of entry base addresses
- * which must refer to dirty entries in the cache. If any
- * of the entries are either clean or don't exist, the
- * function flags an error.
+ * The function receives a list of entry base addresses
+ * which must refer to dirty entries in the cache. If any
+ * of the entries are either clean or don't exist, the
+ * function flags an error.
*
- * The function scans the list of entries and flushes all
- * those that are currently unprotected with the
- * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently
- * protected are flagged for clearing when they are
- * unprotected.
+ * The function scans the list of entries and flushes all
+ * those that are currently unprotected with the
+ * H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently
+ * protected are flagged for clearing when they are
+ * unprotected.
*
* Return: Non-negative on success/Negative on failure
*
@@ -644,22 +644,22 @@ H5C_mark_entries_as_clean(H5F_t * f,
haddr_t * ce_array_ptr)
{
H5C_t * cache_ptr;
- unsigned entries_cleared;
+ unsigned entries_cleared;
unsigned pinned_entries_cleared;
hbool_t progress;
- unsigned entries_examined;
- unsigned initial_list_len;
- haddr_t addr;
- unsigned pinned_entries_marked = 0;
+ unsigned entries_examined;
+ unsigned initial_list_len;
+ haddr_t addr;
+ unsigned pinned_entries_marked = 0;
#if H5C_DO_SANITY_CHECKS
- unsigned protected_entries_marked = 0;
- unsigned other_entries_marked = 0;
- haddr_t last_addr;
+ unsigned protected_entries_marked = 0;
+ unsigned other_entries_marked = 0;
+ haddr_t last_addr;
#endif /* H5C_DO_SANITY_CHECKS */
- H5C_cache_entry_t * clear_ptr = NULL;
- H5C_cache_entry_t * entry_ptr = NULL;
+ H5C_cache_entry_t * clear_ptr = NULL;
+ H5C_cache_entry_t * entry_ptr = NULL;
unsigned u;
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -706,7 +706,7 @@ H5C_mark_entries_as_clean(H5F_t * f,
if(entry_ptr == NULL) {
#if H5C_DO_SANITY_CHECKS
- HDfprintf(stdout,
+ HDfprintf(stdout,
"H5C_mark_entries_as_clean: entry[%u] = %a not in cache.\n",
u,
addr);
@@ -715,7 +715,7 @@ H5C_mark_entries_as_clean(H5F_t * f,
} /* end if */
else if(!entry_ptr->is_dirty) {
#if H5C_DO_SANITY_CHECKS
- HDfprintf(stdout,
+ HDfprintf(stdout,
"H5C_mark_entries_as_clean: entry %a is not dirty!?!\n",
addr);
#endif /* H5C_DO_SANITY_CHECKS */
@@ -735,13 +735,13 @@ H5C_mark_entries_as_clean(H5F_t * f,
} /* end if */
entry_ptr->clear_on_unprotect = TRUE;
- if(entry_ptr->is_pinned)
- pinned_entries_marked++;
+ if(entry_ptr->is_pinned)
+ pinned_entries_marked++;
#if H5C_DO_SANITY_CHECKS
- else if(entry_ptr->is_protected)
- protected_entries_marked++;
- else
- other_entries_marked++;
+ else if(entry_ptr->is_protected)
+ protected_entries_marked++;
+ else
+ other_entries_marked++;
#endif /* H5C_DO_SANITY_CHECKS */
}
}
@@ -769,7 +769,7 @@ H5C_mark_entries_as_clean(H5F_t * f,
* of the pre_serialize / serialize routines, this may
* cease to be the case -- requiring a review of this
* point.
- * JRM -- 4/7/15
+ * JRM -- 4/7/15
*/
entries_cleared = 0;
entries_examined = 0;
@@ -873,9 +873,9 @@ done:
herr_t
H5C_clear_coll_entries(H5C_t *cache_ptr, hbool_t partial)
{
- uint32_t clear_cnt;
- H5C_cache_entry_t * entry_ptr = NULL;
- herr_t ret_value = SUCCEED;
+ uint32_t clear_cnt;
+ H5C_cache_entry_t * entry_ptr = NULL;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT
@@ -1084,7 +1084,7 @@ done:
/*-------------------------------------------------------------------------
* Function: H5C__flush_candidate_entries
*
- * Purpose: Flush or clear (as indicated) the candidate entries that
+ * Purpose: Flush or clear (as indicated) the candidate entries that
* have been marked in the metadata cache. In so doing,
* observe rings and flush dependencies.
*
@@ -1113,9 +1113,9 @@ done:
* Return: Non-negative on success/Negative on failure.
*
* Programmer: John Mainzer
- * 2/10/17
+ * 2/10/17
*
- * Changes: None.
+ * Changes: None.
*
*-------------------------------------------------------------------------
*/
@@ -1124,17 +1124,17 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES
unsigned entries_to_clear[H5C_RING_NTYPES])
{
#if H5C_DO_SANITY_CHECKS
- int i;
- uint32_t index_len = 0;
- size_t index_size = (size_t)0;
- size_t clean_index_size = (size_t)0;
- size_t dirty_index_size = (size_t)0;
- size_t slist_size = (size_t)0;
- uint32_t slist_len = 0;
+ int i;
+ uint32_t index_len = 0;
+ size_t index_size = (size_t)0;
+ size_t clean_index_size = (size_t)0;
+ size_t dirty_index_size = (size_t)0;
+ size_t slist_size = (size_t)0;
+ uint32_t slist_len = 0;
#endif /* H5C_DO_SANITY_CHECKS */
- H5C_ring_t ring;
+ H5C_ring_t ring;
H5C_t * cache_ptr;
- herr_t ret_value = SUCCEED;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_STATIC
@@ -1164,7 +1164,7 @@ H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES
clean_index_size += cache_ptr->clean_index_ring_size[i];
dirty_index_size += cache_ptr->dirty_index_ring_size[i];
- slist_len += cache_ptr->slist_ring_len[i];
+ slist_len += cache_ptr->slist_ring_len[i];
slist_size += cache_ptr->slist_ring_size[i];
} /* end for */
@@ -1206,7 +1206,7 @@ done:
/*-------------------------------------------------------------------------
* Function: H5C__flush_candidates_in_ring
*
- * Purpose: Flush or clear (as indicated) the candidate entries
+ * Purpose: Flush or clear (as indicated) the candidate entries
* contained in the specified cache and ring. All candidate
* entries in rings outside the specified ring must have been
* flushed (or cleared) on entry.
@@ -1235,7 +1235,7 @@ done:
* Return: Non-negative on success/Negative on failure.
*
* Programmer: John Mainzer
- * 2/10/17
+ * 2/10/17
*
*-------------------------------------------------------------------------
*/
diff --git a/src/H5Dbtree2.c b/src/H5Dbtree2.c
index 11bde2d..c254060 100644
--- a/src/H5Dbtree2.c
+++ b/src/H5Dbtree2.c
@@ -292,7 +292,7 @@ H5D__bt2_dst_context(void *_ctx)
/* Free array for chunk dimension sizes */
if(ctx->dim)
- (void)H5FL_ARR_FREE(uint32_t, ctx->dim);
+ H5FL_ARR_FREE(uint32_t, ctx->dim);
/* Release callback context */
ctx = H5FL_FREE(H5D_bt2_ctx_t, ctx);
diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c
index 21b114e..74bc5c6 100644
--- a/src/H5Dchunk.c
+++ b/src/H5Dchunk.c
@@ -1914,7 +1914,7 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t
new_chunk_info->mspace_shared = FALSE;
/* Copy the chunk's scaled coordinates */
- H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims);
+ H5MM_memcpy(new_chunk_info->scaled, scaled, sizeof(hsize_t) * fm->f_ndims);
new_chunk_info->scaled[fm->f_ndims] = 0;
/* Insert the new chunk into the skip list */
@@ -2095,7 +2095,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm)
for(u = 0; u < fm->f_ndims; u++) {
/* Compensate for the chunk offset */
H5_CHECK_OVERFLOW(coords[u], hsize_t, hssize_t);
- chunk_adjust[u] = adjust[u] - (hssize_t)coords[u]; /*lint !e771 The adjust array will always be initialized */
+ chunk_adjust[u] = adjust[u] - (hssize_t)coords[u];
} /* end for */
/* Adjust the selection */
@@ -2329,7 +2329,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u
{
H5D_chunk_map_t *fm = (H5D_chunk_map_t *)_fm; /* File<->memory chunk mapping info */
H5D_chunk_info_t *chunk_info; /* Chunk information for current chunk */
- hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */
+ hsize_t coords_in_mem[H5S_MAX_RANK]; /* Coordinates of element in memory */
hsize_t chunk_index; /* Chunk index */
herr_t ret_value = SUCCEED; /* Return value */
@@ -3147,8 +3147,8 @@ done:
/*-------------------------------------------------------------------------
* Function: H5D__chunk_hash_val
*
- * Purpose: To calculate an index based on the dataset's scaled
- * coordinates and sizes of the faster dimensions.
+ * Purpose: To calculate an index based on the dataset's scaled
+ * coordinates and sizes of the faster dimensions.
*
* Return: Hash value index
*
@@ -5991,7 +5991,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
if((udata->common.layout->flags & H5O_LAYOUT_CHUNK_DONT_FILTER_PARTIAL_BOUND_CHUNKS) &&
H5D__chunk_is_partial_edge_chunk(udata->dset_ndims, udata->common.layout->dim, chunk_rec->scaled, udata->dset_dims))
must_filter = FALSE;
- } /* end if */
+ }
/* Check parameter for type conversion */
if(udata->do_convert) {
@@ -6029,7 +6029,7 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
HDassert(!H5F_addr_defined(chunk_rec->chunk_addr));
H5MM_memcpy(buf, udata->chunk, nbytes);
udata->chunk = NULL;
- } /* end if */
+ }
else {
H5D_rdcc_ent_t *ent = NULL; /* Cache entry */
unsigned idx; /* Index of chunk in cache, if present */
@@ -6062,13 +6062,13 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
H5_CHECKED_ASSIGN(nbytes, size_t, shared_fo->layout.u.chunk.size, uint32_t);
H5MM_memcpy(buf, ent->chunk, nbytes);
- } /* end if */
+ }
else {
/* read chunk data from the source file */
if(H5F_block_read(udata->file_src, H5FD_MEM_DRAW, chunk_rec->chunk_addr, nbytes, buf) < 0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, H5_ITER_ERROR, "unable to read raw data chunk")
- } /* end else */
- } /* end else */
+ }
+ }
/* Need to uncompress filtered variable-length & reference data elements that are not found in chunk cache */
if(must_filter && (is_vlen || fix_ref) && !udata->chunk_in_cache) {
@@ -7201,7 +7201,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_
if((dset->shared->layout.storage.u.chunk.ops->iterate)(&idx_info, H5D__get_num_chunks_cb, &num_chunks) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve allocated chunk information from index")
*nchunks = num_chunks;
- } /* end else */
+ }
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
@@ -7248,7 +7248,7 @@ H5D__get_chunk_info_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata)
/* Stop iterating */
ret_value = H5_ITER_STOP;
- } /* end if */
+ }
/* Go to the next chunk */
else
chunk_info->curr_idx++;
diff --git a/src/H5Dearray.c b/src/H5Dearray.c
index fbd3b04..f1a6a5e 100644
--- a/src/H5Dearray.c
+++ b/src/H5Dearray.c
@@ -11,10 +11,10 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/* Programmer: Quincey Koziol <koziol@hdfgroup.org>
- * Tuesday, January 27, 2009
+/* Programmer: Quincey Koziol
+ * Tuesday, January 27, 2009
*
- * Purpose: Extensible array indexed (chunked) I/O functions. The chunks
+ * Purpose: Extensible array indexed (chunked) I/O functions. The chunks
* are given a single-dimensional index which is used as the
* offset in an extensible array that maps a chunk coordinate to
* a disk address.
@@ -183,7 +183,7 @@ const H5EA_class_t H5EA_CLS_CHUNK[1]={{
H5D__earray_fill, /* Fill block of missing elements callback */
H5D__earray_encode, /* Element encoding callback */
H5D__earray_decode, /* Element decoding callback */
- H5D__earray_debug, /* Element debugging callback */
+ H5D__earray_debug, /* Element debugging callback */
H5D__earray_crt_dbg_context, /* Create debugging context */
H5D__earray_dst_dbg_context /* Destroy debugging context */
}};
@@ -216,14 +216,14 @@ H5FL_DEFINE_STATIC(H5D_earray_ctx_ud_t);
/*-------------------------------------------------------------------------
- * Function: H5D__earray_crt_context
+ * Function: H5D__earray_crt_context
*
- * Purpose: Create context for callbacks
+ * Purpose: Create context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -265,14 +265,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_dst_context
+ * Function: H5D__earray_dst_context
*
- * Purpose: Destroy context for callbacks
+ * Purpose: Destroy context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -295,14 +295,14 @@ H5D__earray_dst_context(void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_fill
+ * Function: H5D__earray_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, January 27, 2009
*
*-------------------------------------------------------------------------
@@ -325,14 +325,14 @@ H5D__earray_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_encode
+ * Function: H5D__earray_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, January 27, 2009
*
*-------------------------------------------------------------------------
@@ -369,14 +369,14 @@ H5D__earray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_decode
+ * Function: H5D__earray_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -413,14 +413,14 @@ H5D__earray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_debug
+ * Function: H5D__earray_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -447,14 +447,14 @@ H5D__earray_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
- * Function: H5D__earray_filt_fill
+ * Function: H5D__earray_filt_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -478,14 +478,14 @@ H5D__earray_filt_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_filt_encode
+ * Function: H5D__earray_filt_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -525,14 +525,14 @@ H5D__earray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
- * Function: H5D__earray_filt_decode
+ * Function: H5D__earray_filt_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -571,14 +571,14 @@ H5D__earray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
- * Function: H5D__earray_filt_debug
+ * Function: H5D__earray_filt_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -606,15 +606,15 @@ H5D__earray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
- * Function: H5D__earray_crt_dbg_context
+ * Function: H5D__earray_crt_dbg_context
*
- * Purpose: Create context for debugging callback
- * (get the layout message in the specified object header)
+ * Purpose: Create context for debugging callback
+ * (get the layout message in the specified object header)
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi; July 2010
+ * Programmer: Vailin Choi; July 2010
*
*-------------------------------------------------------------------------
*/
@@ -680,15 +680,15 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_dst_dbg_context
+ * Function: H5D__earray_dst_dbg_context
*
- * Purpose: Destroy context for debugging callback
- * (free the layout message from the specified object header)
+ * Purpose: Destroy context for debugging callback
+ * (free the layout message from the specified object header)
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi; July 2010
+ * Programmer: Vailin Choi; July 2010
*
*-------------------------------------------------------------------------
*/
@@ -710,16 +710,16 @@ H5D__earray_dst_dbg_context(void *_dbg_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_depend
+ * Function: H5D__earray_idx_depend
*
- * Purpose: Create flush dependency between extensible array and dataset's
+ * Purpose: Create flush dependency between extensible array and dataset's
* object header.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * Tuesday, June 2, 2009
+ * Programmer: Quincey Koziol
+ * Tuesday, June 2, 2009
*
*-------------------------------------------------------------------------
*/
@@ -772,20 +772,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_open
+ * Function: H5D__earray_idx_open
*
- * Purpose: Opens an existing extensible array.
+ * Purpose: Opens an existing extensible array.
*
- * Note: This information is passively initialized from each index
+ * Note: This information is passively initialized from each index
* operation callback because those abstract chunk index operations
* are designed to work with the v1 B-tree chunk indices also,
* which don't require an 'open' for the data structure.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * Thursday, January 29, 2009
+ * Programmer: Quincey Koziol
+ * Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
*/
@@ -814,7 +814,7 @@ H5D__earray_idx_open(const H5D_chk_idx_info_t *idx_info)
/* Open the extensible array for the chunk index */
if(NULL == (idx_info->storage->u.earray.ea = H5EA_open(idx_info->f, idx_info->storage->idx_addr, &udata)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open extensible array")
/* Check for SWMR writes to the file */
if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -827,13 +827,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_init
+ * Function: H5D__earray_idx_init
*
- * Purpose: Initialize the indexing information for a dataset.
+ * Purpose: Initialize the indexing information for a dataset.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Wednesday, May 27, 2009
*
*-------------------------------------------------------------------------
@@ -862,7 +862,7 @@ H5D__earray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t *space,
/* Get the dim info for dataset */
if((sndims = H5S_get_simple_extent_dims(space, NULL, max_dims)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions")
H5_CHECKED_ASSIGN(ndims, unsigned, sndims, int);
/* Find the rank of the unlimited dimension */
@@ -895,20 +895,20 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_create
+ * Function: H5D__earray_idx_create
*
- * Purpose: Creates a new indexed-storage extensible array and initializes
+ * Purpose: Creates a new indexed-storage extensible array and initializes
* the layout struct with information about the storage. The
- * struct should be immediately written to the object header.
+ * struct should be immediately written to the object header.
*
- * This function must be called before passing LAYOUT to any of
- * the other indexed storage functions!
+ * This function must be called before passing LAYOUT to any of
+ * the other indexed storage functions!
*
- * Return: Non-negative on success (with the LAYOUT argument initialized
- * and ready to write to an object header). Negative on failure.
+ * Return: Non-negative on success (with the LAYOUT argument initialized
+ * and ready to write to an object header). Negative on failure.
*
- * Programmer: Quincey Koziol
- * Tuesday, January 27, 2009
+ * Programmer: Quincey Koziol
+ * Tuesday, January 27, 2009
*
*-------------------------------------------------------------------------
*/
@@ -965,11 +965,11 @@ H5D__earray_idx_create(const H5D_chk_idx_info_t *idx_info)
/* Create the extensible array for the chunk index */
if(NULL == (idx_info->storage->u.earray.ea = H5EA_create(idx_info->f, &cparam, &udata)))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create extensible array")
/* Get the address of the extensible array in file */
if(H5EA_get_addr(idx_info->storage->u.earray.ea, &(idx_info->storage->idx_addr)) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array address")
/* Check for SWMR writes to the file */
if(H5F_INTENT(idx_info->f) & H5F_ACC_SWMR_WRITE)
@@ -982,14 +982,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_is_space_alloc
+ * Function: H5D__earray_idx_is_space_alloc
*
- * Purpose: Query if space is allocated for index method
+ * Purpose: Query if space is allocated for index method
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Thursday, January 29, 2009
+ * Programmer: Quincey Koziol
+ * Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
*/
@@ -1006,13 +1006,13 @@ H5D__earray_idx_is_space_alloc(const H5O_storage_chunk_t *storage)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_insert
+ * Function: H5D__earray_idx_insert
*
- * Purpose: Insert chunk address into the indexing structure.
+ * Purpose: Insert chunk address into the indexing structure.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; May 2014
+ * Programmer: Vailin Choi; May 2014
*
*-------------------------------------------------------------------------
*/
@@ -1021,7 +1021,7 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
const H5D_t H5_ATTR_UNUSED *dset)
{
H5EA_t *ea; /* Pointer to extensible array structure */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -1046,26 +1046,26 @@ H5D__earray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata
ea = idx_info->storage->u.earray.ea;
if(!H5F_addr_defined(udata->chunk_block.offset))
- HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "The chunk should have allocated already")
if(udata->chunk_idx != (udata->chunk_idx & 0xffffffff)) /* negative value */
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "chunk index must be less than 2^32")
/* Check for filters on chunks */
if(idx_info->pline->nused > 0) {
- H5D_earray_filt_elmt_t elmt; /* Extensible array element */
+ H5D_earray_filt_elmt_t elmt; /* Extensible array element */
- elmt.addr = udata->chunk_block.offset;
+ elmt.addr = udata->chunk_block.offset;
H5_CHECKED_ASSIGN(elmt.nbytes, uint32_t, udata->chunk_block.length, hsize_t);
- elmt.filter_mask = udata->filter_mask;
+ elmt.filter_mask = udata->filter_mask;
- /* Set the info for the chunk */
- if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
+ /* Set the info for the chunk */
+ if(H5EA_set(ea, udata->chunk_idx, &elmt) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk info")
} /* end if */
else {
- /* Set the address for the chunk */
- if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address")
+ /* Set the address for the chunk */
+ if(H5EA_set(ea, udata->chunk_idx, &udata->chunk_block.offset) < 0)
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set chunk address")
} /* end else */
done:
@@ -1074,15 +1074,15 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_get_addr
+ * Function: H5D__earray_idx_get_addr
*
- * Purpose: Get the file address of a chunk if file space has been
- * assigned. Save the retrieved information in the udata
- * supplied.
+ * Purpose: Get the file address of a chunk if file space has been
+ * assigned. Save the retrieved information in the udata
+ * supplied.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1092,7 +1092,7 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
{
H5EA_t *ea; /* Pointer to extensible array structure */
hsize_t idx; /* Array index of chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -1118,13 +1118,13 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
/* Check for unlimited dim. not being the slowest-changing dim. */
if(idx_info->layout->u.earray.unlim_dim > 0) {
- hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
+ hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */
- unsigned u;
+ unsigned u;
- /* Compute coordinate offset from scaled offset */
- for(u = 0; u < ndims; u++)
- swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u];
+ /* Compute coordinate offset from scaled offset */
+ for(u = 0; u < ndims; u++)
+ swizzled_coords[u] = udata->common.scaled[u] * idx_info->layout->dim[u];
H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim);
@@ -1157,12 +1157,12 @@ H5D__earray_idx_get_addr(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *uda
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk address")
/* Update the other (constant) information for the chunk */
- udata->chunk_block.length = idx_info->layout->size;
+ udata->chunk_block.length = idx_info->layout->size;
udata->filter_mask = 0;
} /* end else */
if(!H5F_addr_defined(udata->chunk_block.offset))
- udata->chunk_block.length = 0;
+ udata->chunk_block.length = 0;
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -1170,14 +1170,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_resize
+ * Function: H5D__earray_idx_resize
*
- * Purpose: Calculate/setup the swizzled down chunk array, used for chunk
+ * Purpose: Calculate/setup the swizzled down chunk array, used for chunk
* index calculations.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, July 23, 2009
*
*-------------------------------------------------------------------------
@@ -1224,13 +1224,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_iterate_cb
+ * Function: H5D__earray_idx_iterate_cb
*
- * Purpose: Callback routine for extensible array element iteration.
+ * Purpose: Callback routine for extensible array element iteration.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; Feb 2015
+ * Programmer: Vailin Choi; Feb 2015
*
*-------------------------------------------------------------------------
*/
@@ -1257,8 +1257,8 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
/* Make "generic chunk" callback */
if(H5F_addr_defined(udata->chunk_rec.chunk_addr))
- if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
- HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
+ if((ret_value = (udata->cb)(&udata->chunk_rec, udata->udata)) < 0)
+ HERROR(H5E_DATASET, H5E_CALLBACK, "failure in generic chunk iterator callback");
/* Update coordinates of chunk in dataset */
ndims = udata->common.layout->ndims - 1;
@@ -1283,18 +1283,18 @@ H5D__earray_idx_iterate_cb(hsize_t H5_ATTR_UNUSED idx, const void *_elmt, void *
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_iterate
+ * Function: H5D__earray_idx_iterate
*
- * Purpose: Iterate over the chunks in an index, making a callback
+ * Purpose: Iterate over the chunks in an index, making a callback
* for each one.
*
- * Note: This implementation is slow, particularly for sparse
+ * Note: This implementation is slow, particularly for sparse
* extensible arrays, replace it with call to H5EA_iterate()
* when that's available.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1332,27 +1332,27 @@ H5D__earray_idx_iterate(const H5D_chk_idx_info_t *idx_info,
/* Get the extensible array statistics */
if(H5EA_get_stats(ea, &ea_stat) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
if(ea_stat.stored.max_idx_set > 0) {
H5D_earray_it_ud_t udata; /* User data for iteration callback */
- /* Initialize userdata */
- HDmemset(&udata, 0, sizeof udata);
- udata.common.layout = idx_info->layout;
- udata.common.storage = idx_info->storage;
+ /* Initialize userdata */
+ HDmemset(&udata, 0, sizeof udata);
+ udata.common.layout = idx_info->layout;
+ udata.common.storage = idx_info->storage;
HDmemset(&udata.chunk_rec, 0, sizeof(udata.chunk_rec));
udata.filtered = (idx_info->pline->nused > 0);
if(!udata.filtered) {
udata.chunk_rec.nbytes = idx_info->layout->size;
udata.chunk_rec.filter_mask = 0;
} /* end if */
- udata.cb = chunk_cb;
- udata.udata = chunk_udata;
+ udata.cb = chunk_cb;
+ udata.udata = chunk_udata;
/* Iterate over the extensible array elements */
- if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0)
- HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
+ if((ret_value = H5EA_iterate(ea, H5D__earray_idx_iterate_cb, &udata)) < 0)
+ HERROR(H5E_DATASET, H5E_BADITER, "unable to iterate over fixed array chunk index");
} /* end if */
done:
@@ -1361,13 +1361,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_remove
+ * Function: H5D__earray_idx_remove
*
- * Purpose: Remove chunk from index.
+ * Purpose: Remove chunk from index.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1377,7 +1377,7 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t
{
H5EA_t *ea; /* Pointer to extensible array structure */
hsize_t idx; /* Array index of chunk */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -1404,13 +1404,13 @@ H5D__earray_idx_remove(const H5D_chk_idx_info_t *idx_info, H5D_chunk_common_ud_t
/* Check for unlimited dim. not being the slowest-changing dim. */
if(idx_info->layout->u.earray.unlim_dim > 0) {
- hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
+ hsize_t swizzled_coords[H5O_LAYOUT_NDIMS]; /* swizzled chunk coordinates */
unsigned ndims = (idx_info->layout->ndims - 1); /* Number of dimensions */
- unsigned u;
+ unsigned u;
- /* Compute coordinate offset from scaled offset */
- for(u = 0; u < ndims; u++)
- swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u];
+ /* Compute coordinate offset from scaled offset */
+ for(u = 0; u < ndims; u++)
+ swizzled_coords[u] = udata->scaled[u] * idx_info->layout->dim[u];
H5VM_swizzle_coords(hsize_t, swizzled_coords, idx_info->layout->u.earray.unlim_dim);
@@ -1472,14 +1472,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_delete_cb
+ * Function: H5D__earray_idx_delete_cb
*
- * Purpose: Delete space for chunk in file
+ * Purpose: Delete space for chunk in file
*
- * Return: Success: Non-negative
- * Failure: negative
+ * Return: Success: Non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1509,19 +1509,19 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_delete
+ * Function: H5D__earray_idx_delete
*
- * Purpose: Delete index and raw data storage for entire dataset
+ * Purpose: Delete index and raw data storage for entire dataset
* (i.e. all chunks)
*
- * Note: This implementation is slow, particularly for sparse
+ * Note: This implementation is slow, particularly for sparse
* extensible arrays, replace it with call to H5EA_iterate()
* when that's available.
*
- * Return: Success: Non-negative
- * Failure: negative
+ * Return: Success: Non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Thursday, January 29, 2009
*
*-------------------------------------------------------------------------
@@ -1571,13 +1571,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_copy_setup
+ * Function: H5D__earray_idx_copy_setup
*
- * Purpose: Set up any necessary information for copying chunks
+ * Purpose: Set up any necessary information for copying chunks
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1626,13 +1626,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_copy_shutdown
+ * Function: H5D__earray_idx_copy_shutdown
*
- * Purpose: Shutdown any information from copying chunks
+ * Purpose: Shutdown any information from copying chunks
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1704,7 +1704,7 @@ H5D__earray_idx_size(const H5D_chk_idx_info_t *idx_info, hsize_t *index_size)
/* Get the extensible array statistics */
if(H5EA_get_stats(ea, &ea_stat) < 0)
- HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
+ HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't query extensible array statistics")
/* Set the size of the extensible array */
*index_size = ea_stat.computed.hdr_size + ea_stat.computed.index_blk_size
@@ -1722,13 +1722,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_reset
+ * Function: H5D__earray_idx_reset
*
- * Purpose: Reset indexing information.
+ * Purpose: Reset indexing information.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1743,7 +1743,7 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr)
/* Reset index info */
if(reset_addr) {
- storage->idx_addr = HADDR_UNDEF;
+ storage->idx_addr = HADDR_UNDEF;
storage->u.earray.dset_ohdr_addr = HADDR_UNDEF;
} /* end if */
storage->u.earray.ea = NULL;
@@ -1753,13 +1753,13 @@ H5D__earray_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_dump
+ * Function: H5D__earray_idx_dump
*
- * Purpose: Dump indexing information to a stream.
+ * Purpose: Dump indexing information to a stream.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1780,13 +1780,13 @@ H5D__earray_idx_dump(const H5O_storage_chunk_t *storage, FILE *stream)
/*-------------------------------------------------------------------------
- * Function: H5D__earray_idx_dest
+ * Function: H5D__earray_idx_dest
*
- * Purpose: Release indexing information in memory.
+ * Purpose: Release indexing information in memory.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, January 31, 2009
*
*-------------------------------------------------------------------------
@@ -1806,7 +1806,7 @@ H5D__earray_idx_dest(const H5D_chk_idx_info_t *idx_info)
/* Check if the extensible array is open */
if(idx_info->storage->u.earray.ea) {
- /* Patch the top level file pointer contained in ea if needed */
+ /* Patch the top level file pointer contained in ea if needed */
if(H5EA_patch_file(idx_info->storage->u.earray.ea, idx_info->f) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, FAIL, "can't patch earray file pointer")
diff --git a/src/H5Dfarray.c b/src/H5Dfarray.c
index 348aeb3..d83c191 100644
--- a/src/H5Dfarray.c
+++ b/src/H5Dfarray.c
@@ -261,14 +261,14 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__farray_dst_context
+ * Function: H5D__farray_dst_context
*
- * Purpose: Destroy context for callbacks
+ * Purpose: Destroy context for callbacks
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -291,14 +291,14 @@ H5D__farray_dst_context(void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_fill
+ * Function: H5D__farray_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -321,14 +321,14 @@ H5D__farray_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_encode
+ * Function: H5D__farray_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -365,14 +365,14 @@ H5D__farray_encode(void *raw, const void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_decode
+ * Function: H5D__farray_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -409,14 +409,14 @@ H5D__farray_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_debug
+ * Function: H5D__farray_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -443,23 +443,23 @@ H5D__farray_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
- * Function: H5D__farray_crt_dbg_context
+ * Function: H5D__farray_crt_dbg_context
*
- * Purpose: Create context for debugging callback
- * (get the layout message in the specified object header)
+ * Purpose: Create context for debugging callback
+ * (get the layout message in the specified object header)
*
- * Return: Success: non-NULL
- * Failure: NULL
+ * Return: Success: non-NULL
+ * Failure: NULL
*
- * Programmer: Vailin Choi
- * 5th August, 2009
+ * Programmer: Vailin Choi
+ * 5th August, 2009
*
*-------------------------------------------------------------------------
*/
static void *
H5D__farray_crt_dbg_context(H5F_t *f, haddr_t obj_addr)
{
- H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
+ H5D_farray_ctx_ud_t *dbg_ctx = NULL; /* Context for fixed array callback */
H5O_loc_t obj_loc; /* Pointer to an object's location */
hbool_t obj_opened = FALSE; /* Flag to indicate that the object header was opened */
H5O_layout_t layout; /* Layout message */
@@ -518,16 +518,16 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__farray_dst_dbg_context
+ * Function: H5D__farray_dst_dbg_context
*
- * Purpose: Destroy context for debugging callback
- * (free the layout message from the specified object header)
+ * Purpose: Destroy context for debugging callback
+ * (free the layout message from the specified object header)
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
- * 24th September, 2009
+ * Programmer: Quincey Koziol
+ * 24th September, 2009
*
*-------------------------------------------------------------------------
*/
@@ -549,14 +549,14 @@ H5D__farray_dst_dbg_context(void *_dbg_ctx)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_filt_fill
+ * Function: H5D__farray_filt_fill
*
- * Purpose: Fill "missing elements" in block of elements
+ * Purpose: Fill "missing elements" in block of elements
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -580,14 +580,14 @@ H5D__farray_filt_fill(void *nat_blk, size_t nelmts)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_filt_encode
+ * Function: H5D__farray_filt_encode
*
- * Purpose: Encode an element from "native" to "raw" form
+ * Purpose: Encode an element from "native" to "raw" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -627,14 +627,14 @@ H5D__farray_filt_encode(void *_raw, const void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
- * Function: H5D__farray_filt_decode
+ * Function: H5D__farray_filt_decode
*
- * Purpose: Decode an element from "raw" to "native" form
+ * Purpose: Decode an element from "raw" to "native" form
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -673,14 +673,14 @@ H5D__farray_filt_decode(const void *_raw, void *_elmt, size_t nelmts, void *_ctx
/*-------------------------------------------------------------------------
- * Function: H5D__farray_filt_debug
+ * Function: H5D__farray_filt_debug
*
- * Purpose: Display an element for debugging
+ * Purpose: Display an element for debugging
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -708,15 +708,15 @@ H5D__farray_filt_debug(FILE *stream, int indent, int fwidth, hsize_t idx,
/*-------------------------------------------------------------------------
- * Function: H5D__farray_idx_depend
+ * Function: H5D__farray_idx_depend
*
- * Purpose: Create flush dependency between fixed array and dataset's
+ * Purpose: Create flush dependency between fixed array and dataset's
* object header.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -798,15 +798,15 @@ H5D__farray_idx_init(const H5D_chk_idx_info_t *idx_info, const H5S_t H5_ATTR_UNU
/*-------------------------------------------------------------------------
- * Function: H5D__farray_idx_open
+ * Function: H5D__farray_idx_open
*
- * Purpose: Opens an existing fixed array and initializes
+ * Purpose: Opens an existing fixed array and initializes
* the layout struct with information about the storage.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -849,19 +849,19 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__farray_idx_create
+ * Function: H5D__farray_idx_create
*
- * Purpose: Creates a new indexed-storage fixed array and initializes
+ * Purpose: Creates a new indexed-storage fixed array and initializes
* the layout struct with information about the storage. The
- * struct should be immediately written to the object header.
+ * struct should be immediately written to the object header.
*
- * This function must be called before passing LAYOUT to any of
- * the other indexed storage functions!
+ * This function must be called before passing LAYOUT to any of
+ * the other indexed storage functions!
*
- * Return: Non-negative on success (with the LAYOUT argument initialized
- * and ready to write to an object header). Negative on failure.
+ * Return: Non-negative on success (with the LAYOUT argument initialized
+ * and ready to write to an object header). Negative on failure.
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -869,9 +869,9 @@ done:
static herr_t
H5D__farray_idx_create(const H5D_chk_idx_info_t *idx_info)
{
- H5FA_create_t cparam; /* Fixed array creation parameters */
+ H5FA_create_t cparam; /* Fixed array creation parameters */
H5D_farray_ctx_ud_t udata; /* User data for fixed array create call */
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -930,13 +930,13 @@ done:
/*-------------------------------------------------------------------------
- * Function: H5D__farray_idx_is_space_alloc
+ * Function: H5D__farray_idx_is_space_alloc
*
- * Purpose: Query if space is allocated for index method
+ * Purpose: Query if space is allocated for index method
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi
+ * Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
@@ -954,13 +954,13 @@ H5D__farray_idx_is_space_alloc(const H5O_storage_chunk_t *storage)
/*-------------------------------------------------------------------------
- * Function: H5D__farray_idx_insert
+ * Function: H5D__farray_idx_insert
*
- * Purpose: Insert chunk address into the indexing structure.
+ * Purpose: Insert chunk address into the indexing structure.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Vailin Choi; 5 May 2014
+ * Programmer: Vailin Choi; 5 May 2014
*
*-------------------------------------------------------------------------
*/
@@ -968,8 +968,8 @@ static herr_t
H5D__farray_idx_insert(const H5D_chk_idx_info_t *idx_info, H5D_chunk_ud_t *udata,
const H5D_t H5_ATTR_UNUSED *dset)
{
- H5FA_t *fa; /* Pointer to fixed array structure */
- herr_t ret_value = SUCCEED; /* Return value */
+ H5FA_t *fa; /* Pointer to fixed array structure */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
diff --git a/src/H5Dio.c b/src/H5Dio.c
index 84b7e7a..a972e00 100644
--- a/src/H5Dio.c
+++ b/src/H5Dio.c
@@ -149,7 +149,7 @@ done:
* The PLIST_ID can be the constant H5P_DEFAULT in which
* case the default data transfer properties are used.
*
- * Return: SUCCEED/FAIL
+ * Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
@@ -271,7 +271,7 @@ done:
* The PLIST_ID can be the constant H5P_DEFAULT in which
* case the default data transfer properties are used.
*
- * Return: SUCCEED/FAIL
+ * Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
@@ -280,7 +280,7 @@ done:
*/
herr_t
H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
- hid_t file_space_id, hid_t dxpl_id, const void *buf)
+ hid_t file_space_id, hid_t dxpl_id, const void *buf)
{
H5VL_object_t *vol_obj = NULL;
herr_t ret_value = SUCCEED; /* Return value */
@@ -410,7 +410,7 @@ H5D__read(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
/* projected mem space must be discarded at the */
/* end of the function to avoid a memory leak. */
H5D_storage_t store; /* union of EFL and chunk pointer in file space */
- hsize_t nelmts; /* total number of elmts */
+ hsize_t nelmts; /* total number of elmts */
hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */
char fake_char; /* Temporary variable for NULL buffer pointers */
herr_t ret_value = SUCCEED; /* Return value */
@@ -621,7 +621,7 @@ H5D__write(H5D_t *dataset, hid_t mem_type_id, const H5S_t *mem_space,
/* projected mem space must be discarded at the */
/* end of the function to avoid a memory leak. */
H5D_storage_t store; /* union of EFL and chunk pointer in file space */
- hsize_t nelmts; /* total number of elmts */
+ hsize_t nelmts; /* total number of elmts */
hbool_t io_op_init = FALSE; /* Whether the I/O op has been initialized */
char fake_char; /* Temporary variable for NULL buffer pointers */
herr_t ret_value = SUCCEED; /* Return value */
@@ -1153,10 +1153,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
/* Append each of the "reason for breaking collective I/O" error messages to the
* local and global no collective cause strings */
- for (cause = 1, idx = 0;
- (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) &&
- (idx < cause_strings_len);
- cause <<= 1, idx++) {
+ for (cause = 1, idx = 0; (cause < H5D_MPIO_NO_COLLECTIVE_MAX_CAUSE) && (idx < cause_strings_len); cause <<= 1, idx++) {
size_t cause_strlen = HDstrlen(cause_strings[idx]);
if (cause & local_no_collective_cause) {
@@ -1166,8 +1163,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
if(local_error_message_previously_written)
HDstrncat(local_no_collective_cause_string, "; ", 2);
- HDstrncat(local_no_collective_cause_string,
- cause_strings[idx], cause_strlen);
+ HDstrncat(local_no_collective_cause_string, cause_strings[idx], cause_strlen);
local_error_message_previously_written = TRUE;
} /* end if */
@@ -1179,8 +1175,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset,
if(global_error_message_previously_written)
HDstrncat(global_no_collective_cause_string, "; ", 2);
- HDstrncat(global_no_collective_cause_string,
- cause_strings[idx], cause_strlen);
+ HDstrncat(global_no_collective_cause_string, cause_strings[idx], cause_strlen);
global_error_message_previously_written = TRUE;
} /* end if */
diff --git a/src/H5Dlayout.c b/src/H5Dlayout.c
index e257140..679a33b 100644
--- a/src/H5Dlayout.c
+++ b/src/H5Dlayout.c
@@ -66,7 +66,7 @@ const unsigned H5O_layout_ver_bounds[] = {
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_set_io_ops
*
@@ -153,7 +153,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_set_io_ops() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_meta_size
*
@@ -284,7 +284,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_meta_size() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_set_version
*
@@ -322,7 +322,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_set_version() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_set_latest_indexing
*
@@ -362,7 +362,7 @@ H5D__layout_set_latest_indexing(H5O_layout_t *layout, const H5S_t *space,
if(ndims > 0) {
hsize_t max_dims[H5O_LAYOUT_NDIMS]; /* Maximum dimension sizes */
hsize_t cur_dims[H5O_LAYOUT_NDIMS]; /* Current dimension sizes */
- unsigned unlim_count = 0; /* Count of unlimited max. dimensions */
+ unsigned unlim_count = 0; /* Count of unlimited max. dimensions */
hbool_t single = TRUE; /* Fulfill single chunk indexing */
unsigned u; /* Local index variable */
@@ -446,7 +446,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_set_latest_indexing() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_oh_create
*
@@ -589,17 +589,17 @@ done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5D__layout_oh_create() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_oh_read
*
- * Purpose: Read layout/pline/efl information for dataset
+ * Purpose: Read layout/pline/efl information for dataset
*
- * Return: Success: SUCCEED
- * Failure: FAIL
+ * Return: Success: SUCCEED
+ * Failure: FAIL
*
- * Programmer: Quincey Koziol
- * Monday, July 27, 2009
+ * Programmer: Quincey Koziol
+ * Monday, July 27, 2009
*
*-------------------------------------------------------------------------
*/
@@ -683,17 +683,17 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__layout_oh_read() */
-
+
/*-------------------------------------------------------------------------
* Function: H5D__layout_oh_write
*
- * Purpose: Write layout information for dataset
+ * Purpose: Write layout information for dataset
*
- * Return: Success: SUCCEED
- * Failure: FAIL
+ * Return: Success: SUCCEED
+ * Failure: FAIL
*
- * Programmer: Quincey Koziol
- * Monday, July 27, 2009
+ * Programmer: Quincey Koziol
+ * Monday, July 27, 2009
*
*-------------------------------------------------------------------------
*/
diff --git a/src/H5Dmodule.h b/src/H5Dmodule.h
index b259b69..27ccf54 100644
--- a/src/H5Dmodule.h
+++ b/src/H5Dmodule.h
@@ -11,7 +11,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Saturday, September 12, 2015
*
* Purpose: This file contains declarations which define macros for the
diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c
index 492902b..cfed02e 100644
--- a/src/H5Dmpio.c
+++ b/src/H5Dmpio.c
@@ -3272,7 +3272,7 @@ H5D__filtered_collective_chunk_entry_io(H5D_filtered_collective_io_info_t *chunk
if(H5S_close(dataspace) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace")
dataspace = NULL;
- } /* end if */
+ }
H5MM_free(chunk_entry->async_info.receive_buffer_array[i]);
} /* end for */
diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h
index c46e38b6..37a27d3 100644
--- a/src/H5Dpkg.h
+++ b/src/H5Dpkg.h
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Programmer: Quincey Koziol
* Monday, April 14, 2003
*
* Purpose: This file contains declarations which are visible only within
diff --git a/src/H5Dselect.c b/src/H5Dselect.c
index c5469c2..5a5c491 100644
--- a/src/H5Dselect.c
+++ b/src/H5Dselect.c
@@ -11,7 +11,7 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.ued>
+/* Programmer: Quincey Koziol
* Thursday, September 30, 2004
*
* Purpose: Dataspace I/O functions.
diff --git a/src/H5EAdbg.c b/src/H5EAdbg.c
index 49bb447..678b661 100644
--- a/src/H5EAdbg.c
+++ b/src/H5EAdbg.c
@@ -13,11 +13,11 @@
/*-------------------------------------------------------------------------
*
- * Created: H5EAdbg.c
- * Sep 11 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Created: H5EAdbg.c
+ * Sep 11 2008
+ * Quincey Koziol
*
- * Purpose: Dump debugging information about an extensible array.
+ * Purpose: Dump debugging information about an extensible array.
*
*-------------------------------------------------------------------------
*/
@@ -37,9 +37,9 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5EApkg.h" /* Extensible Arrays */
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5EApkg.h" /* Extensible Arrays */
/****************/
@@ -79,15 +79,14 @@
/*-------------------------------------------------------------------------
- * Function: H5EA__hdr_debug
+ * Function: H5EA__hdr_debug
*
- * Purpose: Prints debugging info about a extensible array header.
+ * Purpose: Prints debugging info about a extensible array header.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * koziol@hdfgroup.org
- * Sep 11 2008
+ * Programmer: Quincey Koziol
+ * Sep 11 2008
*
*-------------------------------------------------------------------------
*/
@@ -97,7 +96,7 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
int fwidth, const H5EA_class_t *cls, haddr_t obj_addr))
/* Local variables */
- H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */
+ H5EA_hdr_t *hdr = NULL; /* Shared extensible array header */
void *dbg_ctx = NULL; /* Extensible array debugging context */
/* Check arguments */
@@ -117,59 +116,59 @@ H5EA__hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
/* Load the extensible array header */
if(NULL == (hdr = H5EA__hdr_protect(f, addr, dbg_ctx, H5AC__READ_ONLY_FLAG)))
- H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
+ H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
/* Print opening message */
HDfprintf(stream, "%*sExtensible Array Header...\n", indent, "");
/* Print the values */
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
- "Array class ID:", hdr->cparam.cls->name);
+ "Array class ID:", hdr->cparam.cls->name);
HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth,
- "Header size:",
- hdr->size);
+ "Header size:",
+ hdr->size);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Raw Element Size:",
- (unsigned)hdr->cparam.raw_elmt_size);
+ "Raw Element Size:",
+ (unsigned)hdr->cparam.raw_elmt_size);
HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth,
- "Native Element Size (on this platform):",
- hdr->cparam.cls->nat_elmt_size);
+ "Native Element Size (on this platform):",
+ hdr->cparam.cls->nat_elmt_size);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Log2(Max. # of elements in array):",
- (unsigned)hdr->cparam.max_nelmts_bits);
+ "Log2(Max. # of elements in array):",
+ (unsigned)hdr->cparam.max_nelmts_bits);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "# of elements in index block:",
- (unsigned)hdr->cparam.idx_blk_elmts);
+ "# of elements in index block:",
+ (unsigned)hdr->cparam.idx_blk_elmts);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Min. # of elements per data block:",
- (unsigned)hdr->cparam.data_blk_min_elmts);
+ "Min. # of elements per data block:",
+ (unsigned)hdr->cparam.data_blk_min_elmts);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Min. # of data block pointers for a super block:",
- (unsigned)hdr->cparam.sup_blk_min_data_ptrs);
+ "Min. # of data block pointers for a super block:",
+ (unsigned)hdr->cparam.sup_blk_min_data_ptrs);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
- "Log2(Max. # of elements in data block page):",
- (unsigned)hdr->cparam.max_dblk_page_nelmts_bits);
+ "Log2(Max. # of elements in data block page):",
+ (unsigned)hdr->cparam.max_dblk_page_nelmts_bits);
HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth,
- "Highest element index stored (+1):",
- hdr->stats.stored.max_idx_set);
+ "Highest element index stored (+1):",
+ hdr->stats.stored.max_idx_set);
HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth,
- "Number of super blocks created:",
- hdr->stats.stored.nsuper_blks);
+ "Number of super blocks created:",
+ hdr->stats.stored.nsuper_blks);
HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth,
- "Number of data blocks created:",
- hdr->stats.stored.ndata_blks);
+ "Number of data blocks created:",
+ hdr->stats.stored.ndata_blks);
HDfprintf(stream, "%*s%-*s %" PRIuHSIZE "\n", indent, "", fwidth,
- "Number of elements 'realized':",
- hdr->stats.stored.nelmts);
+ "Number of elements 'realized':",
+ hdr->stats.stored.nelmts);
HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent, "", fwidth,
- "Index Block Address:",
- hdr->idx_blk_addr);
+ "Index Block Address:",
+ hdr->idx_blk_addr);
CATCH
if(dbg_ctx && cls->dst_dbg_ctx(dbg_ctx) < 0)
H5E_THROW(H5E_CANTRELEASE, "unable to release extensible array debugging context")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__hdr_debug() */
@@ -384,21 +383,20 @@ CATCH
if(sblock && H5EA__sblock_unprotect(sblock, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array super block")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__sblock_debug() */
/*-------------------------------------------------------------------------
- * Function: H5EA__dblock_debug
+ * Function: H5EA__dblock_debug
*
- * Purpose: Prints debugging info about a extensible array data block.
+ * Purpose: Prints debugging info about a extensible array data block.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * koziol@hdfgroup.org
- * Sep 22 2008
+ * Programmer: Quincey Koziol
+ * Sep 22 2008
*
*-------------------------------------------------------------------------
*/
@@ -432,7 +430,7 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
/* Load the extensible array header */
if(NULL == (hdr = H5EA__hdr_protect(f, hdr_addr, dbg_ctx, H5AC__READ_ONLY_FLAG)))
- H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
+ H5E_THROW(H5E_CANTPROTECT, "unable to load extensible array header")
/* Protect data block */
/* (Note: setting parent of data block to 'hdr' for this operation should be OK -QAK) */
@@ -444,10 +442,10 @@ H5EA__dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent,
/* Print the values */
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
- "Array class ID:", hdr->cparam.cls->name);
+ "Array class ID:", hdr->cparam.cls->name);
HDfprintf(stream, "%*s%-*s %zu\n", indent, "", fwidth,
- "Data Block size:",
- dblock->size);
+ "Data Block size:",
+ dblock->size);
/* Print the elements in the index block */
@@ -466,7 +464,7 @@ CATCH
if(dblock && H5EA__dblock_unprotect(dblock, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array data block")
if(hdr && H5EA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
- H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
+ H5E_THROW(H5E_CANTUNPROTECT, "unable to release extensible array header")
END_FUNC(PKG) /* end H5EA__dblock_debug() */
diff --git a/src/H5EAmodule.h b/src/H5EAmodule.h
index d3e06b7..c3a4c7c 100644
--- a/src/H5EAmodule.h
+++ b/src/H5EAmodule.h
@@ -11,7 +11,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Saturday, September 12, 2015
*
* Purpose: This file contains declarations which define macros for the
diff --git a/src/H5EApkg.h b/src/H5EApkg.h
index bb3f39c..b70231d 100644
--- a/src/H5EApkg.h
+++ b/src/H5EApkg.h
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Tuesday, June 17, 2008
*
* Purpose: This file contains declarations which are visible only
diff --git a/src/H5EAprivate.h b/src/H5EAprivate.h
index 1195256..af0ef3a 100644
--- a/src/H5EAprivate.h
+++ b/src/H5EAprivate.h
@@ -15,7 +15,7 @@
*
* Created: H5EAprivate.h
* Jun 17 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Quincey Koziol
*
* Purpose: Private header for library accessible extensible
* array routines.
diff --git a/src/H5EAsblock.c b/src/H5EAsblock.c
index b4671f8..fb7c458 100644
--- a/src/H5EAsblock.c
+++ b/src/H5EAsblock.c
@@ -15,7 +15,7 @@
*
* Created: H5EAsblock.c
* Sep 30 2008
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Quincey Koziol
*
* Purpose: Super block routines for extensible arrays.
*
@@ -98,7 +98,6 @@ H5FL_BLK_DEFINE(page_init);
* Return: Non-NULL pointer to super block on success/NULL on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
@@ -179,7 +178,6 @@ END_FUNC(PKG) /* end H5EA__sblock_alloc() */
* Return: Valid file address on success/HADDR_UNDEF on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
@@ -267,7 +265,6 @@ END_FUNC(PKG) /* end H5EA__sblock_create() */
* Return: Non-NULL pointer to data block on success/NULL on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
@@ -328,7 +325,6 @@ END_FUNC(PKG) /* end H5EA__sblock_protect() */
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
@@ -359,7 +355,6 @@ END_FUNC(PKG) /* end H5EA__sblock_unprotect() */
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
@@ -408,7 +403,6 @@ END_FUNC(PKG) /* end H5EA__sblock_delete() */
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 30 2008
*
*-------------------------------------------------------------------------
diff --git a/src/H5Glink.c b/src/H5Glink.c
index 6c42f1d..cbe5307 100644
--- a/src/H5Glink.c
+++ b/src/H5Glink.c
@@ -15,7 +15,7 @@
*
* Created: H5Glink.c
* Nov 13 2006
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Quincey Koziol
*
* Purpose: Functions for handling links in groups.
*
@@ -98,7 +98,6 @@ static int H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2);
* (i.e. same as strcmp())
*
* Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
* Sep 5 2005
*
*-------------------------------------------------------------------------
@@ -125,7 +124,6 @@ H5G_link_cmp_name_inc(const void *lnk1, const void *lnk2)
* (i.e. opposite strcmp())
*
* Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
* Sep 25 2006
*
*-------------------------------------------------------------------------
@@ -151,7 +149,6 @@ H5G_link_cmp_name_dec(const void *lnk1, const void *lnk2)
* as equal, their order in the sorted array is undefined.
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Nov 6 2006
*
*-------------------------------------------------------------------------
@@ -186,7 +183,6 @@ H5G_link_cmp_corder_inc(const void *lnk1, const void *lnk2)
* as equal, their order in the sorted array is undefined.
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Nov 6 2006
*
*-------------------------------------------------------------------------
@@ -217,7 +213,6 @@ H5G_link_cmp_corder_dec(const void *lnk1, const void *lnk2)
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Sep 16 2006
*
*-------------------------------------------------------------------------
@@ -561,7 +556,6 @@ done:
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Nov 13 2006
*
*-------------------------------------------------------------------------
diff --git a/src/H5Gloc.c b/src/H5Gloc.c
index 4d89abb..0243b41 100644
--- a/src/H5Gloc.c
+++ b/src/H5Gloc.c
@@ -15,7 +15,7 @@
*
* Created: H5Gloc.c
* Sep 13 2005
- * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Quincey Koziol
*
* Purpose: Functions for working with group "locations"
*
diff --git a/src/H5Gname.c b/src/H5Gname.c
index 4b0f04c..e1004de 100644
--- a/src/H5Gname.c
+++ b/src/H5Gname.c
@@ -15,7 +15,7 @@
*
* Created: H5Gname.c
* Sep 12 2005
- * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Quincey Koziol
*
* Purpose: Functions for handling group hierarchy paths.
*
@@ -123,7 +123,6 @@ H5FL_BLK_EXTERN(str_buf);
* Failure: Ptr to the null terminator of NAME.
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Aug 11 1997
*
*-------------------------------------------------------------------------
@@ -216,7 +215,7 @@ done:
* Return: TRUE for valid prefix, FALSE for not a valid prefix, FAIL
* on error
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: September 24, 2002
*
@@ -281,7 +280,7 @@ done:
*
* Return: Pointer to reference counted string on success, NULL on error
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: August 19, 2005
*
@@ -343,7 +342,7 @@ done:
* Return: Success: Non-NULL, combined path
* Failure: NULL
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
* Tuesday, October 11, 2005
*
*-------------------------------------------------------------------------
@@ -379,7 +378,7 @@ H5G_build_fullpath_refstr_str(H5RS_str_t *prefix_r, const char *name)
*
* Return: Pointer to reference counted string on success, NULL on error
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: August 19, 2005
*
@@ -448,7 +447,7 @@ H5G__name_init(H5G_name_t *name, const char *path)
* Return: Success: Non-negative
* Failure: Negative
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
* Thursday, August 22, 2002
*
*-------------------------------------------------------------------------
@@ -552,10 +551,6 @@ H5G_name_copy(H5G_name_t *dst, const H5G_name_t *src, H5_copy_depth_t depth)
* Programmer: Quincey Koziol
* Tuesday, December 13, 2005
*
- * Modifications: Leon Arber
- * Oct. 18, 2006
- * Added functionality to get the name for a reference.
- *
*-------------------------------------------------------------------------
*/
ssize_t
@@ -639,7 +634,7 @@ H5G_name_reset(H5G_name_t *name)
*
* Return: Success
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
*
* Date: August 22, 2002
*
@@ -777,7 +772,7 @@ done:
*
* Return: Success: 0, Failure: -1
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
*
* Date: June 5, 2002
*
@@ -1060,7 +1055,7 @@ done:
*
* Return: Success: 0, Failure: -1
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
*
* Date: June 11, 2002
*
diff --git a/src/H5Gnode.c b/src/H5Gnode.c
index 9faa0b5..2e7b367 100644
--- a/src/H5Gnode.c
+++ b/src/H5Gnode.c
@@ -15,7 +15,7 @@
*
* Created: H5Gnode.c
* Jun 26 1997
- * Robb Matzke <matzke@llnl.gov>
+ * Robb Matzke
*
* Purpose: Functions for handling symbol table nodes. A
* symbol table node is a small collection of symbol
@@ -145,8 +145,6 @@ H5FL_SEQ_DEFINE(H5G_entry_t);
* Programmer: Robb Matzke
* Wednesday, October 8, 1997
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static H5UC_t *
@@ -169,7 +167,6 @@ H5G_node_get_shared(const H5F_t *f, const void H5_ATTR_UNUSED *_udata)
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jul 8 1997
*
*-------------------------------------------------------------------------
@@ -199,7 +196,6 @@ H5G_node_decode_key(const H5B_shared_t *shared, const uint8_t *raw, void *_key)
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jul 8 1997
*
*-------------------------------------------------------------------------
@@ -270,7 +266,6 @@ H5G_node_debug_key(FILE *stream, int indent, int fwidth, const void *_key,
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
* Jan 15 2003
*
*-------------------------------------------------------------------------
@@ -310,7 +305,6 @@ H5G__node_free(H5G_node_t *sym)
* Failure: Negative
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 23 1997
*
*-------------------------------------------------------------------------
@@ -382,11 +376,8 @@ done:
* Failure: FAIL (same as LT_KEY<RT_KEY)
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 23 1997
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static herr_t
@@ -439,11 +430,8 @@ done:
* Failure: FAIL (same as UDATA < LT_KEY)
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 23 1997
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static herr_t
@@ -501,7 +489,6 @@ done:
* Failure: Negative if not found.
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 23 1997
*
*-------------------------------------------------------------------------
@@ -591,7 +578,6 @@ done:
* Failure: H5B_INS_ERROR, NEW_NODE_P might not be initialized.
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 24 1997
*
*-------------------------------------------------------------------------
@@ -951,7 +937,6 @@ done:
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Jun 24 1997
*
*-------------------------------------------------------------------------
@@ -1368,7 +1353,6 @@ done:
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@hdfgroup.org
* Nov 19 2006
*
*-------------------------------------------------------------------------
@@ -1475,7 +1459,6 @@ H5G__node_iterate_size(H5F_t *f, const void H5_ATTR_UNUSED *_lt_key,
* Return: 0(zero) on success/Negative on failure
*
* Programmer: Robb Matzke
- * matzke@llnl.gov
* Aug 4 1997
*
*-------------------------------------------------------------------------
diff --git a/src/H5HLmodule.h b/src/H5HLmodule.h
index b0fd750..712c7c1 100644
--- a/src/H5HLmodule.h
+++ b/src/H5HLmodule.h
@@ -11,7 +11,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Saturday, September 12, 2015
*
* Purpose: This file contains declarations which define macros for the
diff --git a/src/H5HLpkg.h b/src/H5HLpkg.h
index 44a2cfb..9891e10 100644
--- a/src/H5HLpkg.h
+++ b/src/H5HLpkg.h
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Programmer: Quincey Koziol
* Wednesday, July 9, 2003
*
* Purpose: This file contains declarations which are visible
diff --git a/src/H5HLprivate.h b/src/H5HLprivate.h
index 7a53b25..60505ee 100644
--- a/src/H5HLprivate.h
+++ b/src/H5HLprivate.h
@@ -15,7 +15,7 @@
*
* Created: H5HLprivate.h
* Jul 16 1997
- * Robb Matzke <matzke@llnl.gov>
+ * Robb Matzke
*
* Purpose: Private declarations for the H5HL (local heap) package.
*
diff --git a/src/H5Olink.c b/src/H5Olink.c
index f052a53..056208e 100644
--- a/src/H5Olink.c
+++ b/src/H5Olink.c
@@ -119,11 +119,12 @@ H5FL_DEFINE_STATIC(H5O_link_t);
static void *
H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags,
- size_t H5_ATTR_UNUSED p_size, const uint8_t *p)
+ size_t p_size, const uint8_t *p)
{
H5O_link_t *lnk = NULL; /* Pointer to link message */
size_t len = 0; /* Length of a string in the message */
unsigned char link_flags; /* Flags for encoding link info */
+ const uint8_t *p_end = p + p_size; /* End of the p buffer */
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
@@ -199,6 +200,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
if(len == 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid name length")
+ /* Make sure that length doesn't exceed buffer size, which could occur
+ when the file is corrupted */
+ if(p + len > p_end)
+ HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer")
+
/* Get the link's name */
if(NULL == (lnk->name = (char *)H5MM_malloc(len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
@@ -218,6 +224,12 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
UINT16DECODE(p, len)
if(len == 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "invalid link length")
+
+ /* Make sure that length doesn't exceed buffer size, which could occur
+ when the file is corrupted */
+ if(p + len > p_end)
+ HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer")
+
if(NULL == (lnk->u.soft.name = (char *)H5MM_malloc((size_t)len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
H5MM_memcpy(lnk->u.soft.name, p, len);
@@ -238,6 +250,11 @@ H5O__link_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh,
lnk->u.ud.size = len;
if(len > 0)
{
+ /* Make sure that length doesn't exceed buffer size, which could
+ occur when the file is corrupted */
+ if(p + len > p_end)
+ HGOTO_ERROR(H5E_OHDR, H5E_OVERFLOW, NULL, "name length causes read past end of buffer")
+
if(NULL == (lnk->u.ud.udata = H5MM_malloc((size_t)len)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
H5MM_memcpy(lnk->u.ud.udata, p, len);
diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c
index 7e49c4b..064a9b8 100644
--- a/src/H5Pdcpl.c
+++ b/src/H5Pdcpl.c
@@ -246,7 +246,7 @@ static hbool_t H5P_dcrt_def_layout_init_g = FALSE;
static herr_t
H5P__dcrt_reg_prop(H5P_genclass_t *pclass)
{
- herr_t ret_value = SUCCEED; /* Return value */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
@@ -421,13 +421,13 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size)
for(u = 0; u < layout->storage.u.virt.list_nused; u++) {
/* Source file name */
tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_file_name) + (size_t)1;
- (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size);
+ H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_file_name, tmp_size);
*pp += tmp_size;
*size += tmp_size;
/* Source dataset name */
tmp_size = HDstrlen(layout->storage.u.virt.list[u].source_dset_name) + (size_t)1;
- (void)H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size);
+ H5MM_memcpy(*pp, layout->storage.u.virt.list[u].source_dset_name, tmp_size);
*pp += tmp_size;
*size += tmp_size;
@@ -597,14 +597,14 @@ H5P__dcrt_layout_dec(const void **_pp, void *value)
tmp_size = HDstrlen((const char *)*pp) + 1;
if(NULL == (tmp_layout.storage.u.virt.list[u].source_file_name = (char *)H5MM_malloc(tmp_size)))
HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source file name")
- (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size);
+ H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_file_name, *pp, tmp_size);
*pp += tmp_size;
/* Source dataset name */
tmp_size = HDstrlen((const char *)*pp) + 1;
if(NULL == (tmp_layout.storage.u.virt.list[u].source_dset_name = (char *)H5MM_malloc(tmp_size)))
HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, FAIL, "unable to allocate memory for source dataset name")
- (void)H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size);
+ H5MM_memcpy(tmp_layout.storage.u.virt.list[u].source_dset_name, *pp, tmp_size);
*pp += tmp_size;
/* Source selection */
@@ -2375,7 +2375,7 @@ H5Pget_virtual_vspace(hid_t dcpl_id, size_t idx)
/* Get the virtual space */
if(idx >= layout.storage.u.virt.list_nused)
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
if(NULL == (space = H5S_copy(layout.storage.u.virt.list[idx].source_dset.virtual_select, FALSE, TRUE)))
HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "unable to copy virtual selection")
@@ -2431,9 +2431,9 @@ H5Pget_virtual_srcspace(hid_t dcpl_id, size_t idx)
if(H5D_VIRTUAL != layout.type)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a virtual storage layout")
- /* Check idx */
+ /* Check index */
if(idx >= layout.storage.u.virt.list_nused)
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
/* Attempt to open source dataset and patch extent if extent status is not
@@ -2537,7 +2537,7 @@ H5Pget_virtual_filename(hid_t dcpl_id, size_t idx, char *name/*out*/,
/* Get the virtual filename */
if(idx >= layout.storage.u.virt.list_nused)
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
HDassert(layout.storage.u.virt.list[idx].source_file_name);
if(name && (size > 0))
@@ -2600,7 +2600,7 @@ H5Pget_virtual_dsetname(hid_t dcpl_id, size_t idx, char *name/*out*/,
/* Get the virtual filename */
if(idx >= layout.storage.u.virt.list_nused)
- HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid idx (out of range)")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "invalid index (out of range)")
HDassert(layout.storage.u.virt.list_nused <= layout.storage.u.virt.list_nalloc);
HDassert(layout.storage.u.virt.list[idx].source_dset_name);
if(name && (size > 0))
diff --git a/src/H5Rint.c b/src/H5Rint.c
index 30f3dbb..6dfbf2b 100644
--- a/src/H5Rint.c
+++ b/src/H5Rint.c
@@ -423,6 +423,10 @@ H5R__destroy(H5R_ref_priv_t *ref)
HDassert(ref != NULL);
+ H5R_LOG_DEBUG("Destroying reference, filename=%s, obj_addr=%s, encode size=%u",
+ ref->info.obj.filename, H5R__print_token(ref->info.obj.token),
+ ref->encode_size);
+
H5MM_xfree(ref->info.obj.filename);
ref->info.obj.filename = NULL;
@@ -1028,6 +1032,10 @@ H5R__encode(const char *filename, const H5R_ref_priv_t *ref, unsigned char *buf,
HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, FAIL, "internal error (unknown reference type)")
} /* end switch */
+ H5R_LOG_DEBUG("Encoded reference, filename=%s, obj_addr=%s, encode size=%u",
+ ref->info.obj.filename, H5R__print_token(ref->info.obj.token),
+ encode_size);
+
*nalloc = encode_size;
done:
diff --git a/src/H5S.c b/src/H5S.c
index ddfd064..7e48076 100644
--- a/src/H5S.c
+++ b/src/H5S.c
@@ -88,18 +88,18 @@ H5FL_ARR_DEFINE(hsize_t, H5S_MAX_RANK);
/* Dataspace ID class */
static const H5I_class_t H5I_DATASPACE_CLS[1] = {{
- H5I_DATASPACE, /* ID class value */
- 0, /* Class flags */
- 2, /* # of reserved IDs for class */
- (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */
+ H5I_DATASPACE, /* ID class value */
+ 0, /* Class flags */
+ 2, /* # of reserved IDs for class */
+ (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */
}};
/* Dataspace selection iterator ID class */
static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{
- H5I_SPACE_SEL_ITER, /* ID class value */
- 0, /* Class flags */
- 0, /* # of reserved IDs for class */
- (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */
+ H5I_SPACE_SEL_ITER, /* ID class value */
+ 0, /* Class flags */
+ 0, /* # of reserved IDs for class */
+ (H5I_free_t)H5S_sel_iter_close /* Callback routine for closing objects of this class */
}};
@@ -107,7 +107,7 @@ static const H5I_class_t H5I_SPACE_SEL_ITER_CLS[1] = {{
static hbool_t H5S_top_package_initialize_s = FALSE;
-
+
/*--------------------------------------------------------------------------
NAME
H5S__init_package -- Initialize interface-specific information
@@ -127,11 +127,11 @@ H5S__init_package(void)
/* Initialize the atom group for the dataspace IDs */
if(H5I_register_type(H5I_DATASPACE_CLS) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace ID class")
/* Initialize the atom group for the dataspace selction iterator IDs */
if(H5I_register_type(H5I_SPACE_SEL_ITER_CLS) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize dataspace selection iterator ID class")
/* Mark "top" of interface as initialized, too */
H5S_top_package_initialize_s = TRUE;
@@ -140,7 +140,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__init_package() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_top_term_package
@@ -162,22 +162,22 @@ done:
int
H5S_top_term_package(void)
{
- int n = 0;
+ int n = 0;
FUNC_ENTER_NOAPI_NOINIT_NOERR
if(H5S_top_package_initialize_s) {
- if(H5I_nmembers(H5I_DATASPACE) > 0) {
- (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE);
+ if(H5I_nmembers(H5I_DATASPACE) > 0) {
+ (void)H5I_clear_type(H5I_DATASPACE, FALSE, FALSE);
n++; /*H5I*/
- } /* end if */
+ } /* end if */
- if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) {
- (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE);
+ if(H5I_nmembers(H5I_SPACE_SEL_ITER) > 0) {
+ (void)H5I_clear_type(H5I_SPACE_SEL_ITER, FALSE, FALSE);
n++; /*H5I*/
- } /* end if */
+ } /* end if */
- /* Mark "top" of interface as closed */
+ /* Mark "top" of interface as closed */
if(0 == n)
H5S_top_package_initialize_s = FALSE;
} /* end if */
@@ -185,7 +185,7 @@ H5S_top_term_package(void)
FUNC_LEAVE_NOAPI(n)
} /* end H5S_top_term_package() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_term_package
@@ -209,7 +209,7 @@ H5S_top_term_package(void)
int
H5S_term_package(void)
{
- int n = 0;
+ int n = 0;
FUNC_ENTER_NOAPI_NOINIT_NOERR
@@ -225,7 +225,7 @@ H5S_term_package(void)
/* Destroy the dataspace selection iterator object id group */
n += (H5I_dec_type_ref(H5I_SPACE_SEL_ITER) > 0);
- /* Mark interface as closed */
+ /* Mark interface as closed */
if(0 == n)
H5_PKG_INIT_VAR = FALSE;
} /* end if */
@@ -234,7 +234,7 @@ H5S_term_package(void)
} /* end H5S_term_package() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_get_validiated_dataspace
@@ -278,13 +278,13 @@ H5S_get_validated_dataspace(hid_t space_id, const H5S_t **space)
/* Check for valid selection */
if(H5S_SELECT_VALID(*space) != TRUE)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection + offset not within extent")
- } /* end else */
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_validated_dataspace() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_create
@@ -362,7 +362,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_create() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Screate
@@ -409,16 +409,16 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Screate() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__extent_release
*
- * Purpose: Releases all memory associated with a dataspace extent.
+ * Purpose: Releases all memory associated with a dataspace extent.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Thursday, July 23, 1998
+ * Programmer: Quincey Koziol
+ * Thursday, July 23, 1998
*
*-------------------------------------------------------------------------
*/
@@ -437,19 +437,22 @@ H5S__extent_release(H5S_extent_t *extent)
extent->max = H5FL_ARR_FREE(hsize_t, extent->max);
} /* end if */
+ extent->rank = 0;
+ extent->nelem = 0;
+
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__extent_release() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_close
*
- * Purpose: Releases all memory associated with a dataspace.
+ * Purpose: Releases all memory associated with a dataspace.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
@@ -481,16 +484,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_close() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sclose
*
- * Purpose: Release access to a dataspace object.
+ * Purpose: Release access to a dataspace object.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
@@ -514,69 +517,70 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sclose() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Scopy
*
- * Purpose: Copies a dataspace.
+ * Purpose: Copies a dataspace.
+ *
+ * Return: Success: ID of the new dataspace
*
- * Return: Success: ID of the new dataspace
- * Failure: Negative
+ * Failure: H5I_INVALID_HID
*
- * Programmer: Robb Matzke
- * Friday, January 30, 1998
+ * Programmer: Robb Matzke
+ * Friday, January 30, 1998
*
*-------------------------------------------------------------------------
*/
hid_t
H5Scopy(hid_t space_id)
{
- H5S_t *src;
- H5S_t *dst = NULL;
- hid_t ret_value;
+ H5S_t *src = NULL;
+ H5S_t *dst = NULL;
+ hid_t ret_value = H5I_INVALID_HID;
- FUNC_ENTER_API(FAIL)
+ FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "i", space_id);
/* Check args */
if(NULL == (src = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a dataspace")
/* Copy */
if(NULL == (dst = H5S_copy(src, FALSE, TRUE)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to copy dataspace")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, H5I_INVALID_HID, "unable to copy dataspace")
/* Atomize */
if((ret_value = H5I_register (H5I_DATASPACE, dst, TRUE)) < 0)
- HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace atom")
+ HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace atom")
done:
if(ret_value < 0)
if(dst && H5S_close(dst) < 0)
- HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace")
FUNC_LEAVE_API(ret_value)
} /* end H5Scopy() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sextent_copy
*
- * Purpose: Copies a dataspace extent.
+ * Purpose: Copies a dataspace extent.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Thursday, July 23, 1998
+ * Programmer: Quincey Koziol
+ * Thursday, July 23, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5Sextent_copy(hid_t dst_id,hid_t src_id)
{
- H5S_t *src;
- H5S_t *dst;
- herr_t ret_value = SUCCEED;
+ H5S_t *src;
+ H5S_t *dst;
+ herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "ii", dst_id, src_id);
@@ -595,7 +599,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sextent_copy() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_extent_copy
*
@@ -632,16 +636,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_extent_copy() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__extent_copy_real
*
- * Purpose: Copies a dataspace extent
+ * Purpose: Copies a dataspace extent
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Wednesday, June 3, 1998
+ * Programmer: Quincey Koziol
+ * Wednesday, June 3, 1998
*
*-------------------------------------------------------------------------
*/
@@ -701,29 +705,30 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__extent_copy_real() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_copy
*
- * Purpose: Copies a dataspace, by copying the extent and selection through
- * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag
- * is set, then the selection can be shared between the source and
- * destination dataspaces. (This should only occur in situations
- * where the destination dataspace will immediately change to a new
- * selection)
+ * Purpose: Copies a dataspace, by copying the extent and selection through
+ * H5S_extent_copy and H5S_select_copy. If the SHARE_SELECTION flag
+ * is set, then the selection can be shared between the source and
+ * destination dataspaces. (This should only occur in situations
+ * where the destination dataspace will immediately change to a new
+ * selection)
+ *
+ * Return: Success: A pointer to a new copy of SRC
*
- * Return: Success: A pointer to a new copy of SRC
- * Failure: NULL
+ * Failure: NULL
*
- * Programmer: Robb Matzke
- * Thursday, December 4, 1997
+ * Programmer: Robb Matzke
+ * Thursday, December 4, 1997
*
*-------------------------------------------------------------------------
*/
H5S_t *
H5S_copy(const H5S_t *src, hbool_t share_selection, hbool_t copy_max)
{
- H5S_t *dst = NULL;
+ H5S_t *dst = NULL;
H5S_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI(NULL)
@@ -750,17 +755,18 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_copy() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_get_simple_extent_npoints
*
- * Purpose: Determines how many data points a dataset extent has.
+ * Purpose: Determines how many data points a dataset extent has.
*
- * Return: Success: Number of data points in the dataset extent.
- * Failure: negative
+ * Return: Success: Number of data points in the dataset extent.
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Failure: Negative
+ *
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
* Note: This routine participates in the "Inlining C function pointers"
* pattern, don't call it directly, use the appropriate macro
@@ -785,17 +791,17 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_simple_extent_npoints() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sget_simple_extent_npoints
*
- * Purpose: Determines how many data points a dataset extent has.
+ * Purpose: Determines how many data points a dataset extent has.
*
- * Return: Success: Number of data points in the dataset.
- * Failure: negative
+ * Return: Success: Number of data points in the dataset.
+ * Failure: Negative
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
@@ -803,7 +809,7 @@ hssize_t
H5Sget_simple_extent_npoints(hid_t space_id)
{
H5S_t *ds;
- hssize_t ret_value;
+ hssize_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE1("Hs", "i", space_id);
@@ -818,22 +824,22 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_simple_extent_npoints() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_get_npoints_max
*
- * Purpose: Determines the maximum number of data points a dataspace may
- * have. If the `max' array is null then the maximum number of
- * data points is the same as the current number of data points
- * without regard to the hyperslab. If any element of the `max'
- * array is zero then the maximum possible size is returned.
+ * Purpose: Determines the maximum number of data points a dataspace may
+ * have. If the `max' array is null then the maximum number of
+ * data points is the same as the current number of data points
+ * without regard to the hyperslab. If any element of the `max'
+ * array is zero then the maximum possible size is returned.
*
- * Return: Success: Maximum number of data points the dataspace
- * may have.
- * Failure: 0
+ * Return: Success: Maximum number of data points the dataspace
+ * may have.
+ * Failure: 0
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
@@ -841,7 +847,7 @@ hsize_t
H5S_get_npoints_max(const H5S_t *ds)
{
unsigned u;
- hsize_t ret_value = 0; /* Return value */
+ hsize_t ret_value = 0; /* Return value */
FUNC_ENTER_NOAPI(0)
@@ -863,11 +869,11 @@ H5S_get_npoints_max(const H5S_t *ds)
if(H5S_UNLIMITED == ds->extent.max[u]) {
ret_value = HSIZET_MAX;
break;
- } /* end if */
+ }
else
ret_value *= ds->extent.max[u];
- } /* end for */
- } /* end if */
+ }
+ }
else
for(ret_value = 1, u = 0; u < ds->extent.rank; u++)
ret_value *= ds->extent.size[u];
@@ -877,38 +883,38 @@ H5S_get_npoints_max(const H5S_t *ds)
default:
HDassert("unknown dataspace class" && 0);
HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, 0, "internal error (unknown dataspace class)")
- } /* end switch */
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_npoints_max() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sget_simple_extent_ndims
*
- * Purpose: Determines the dimensionality of a dataspace.
+ * Purpose: Determines the dimensionality of a dataspace.
*
- * Return: Success: The number of dimensions in a dataspace.
- * Failure: Negative
+ * Return: Success: The number of dimensions in a dataspace.
+ * Failure: Negative
*
- * Programmer: Robb Matzke
- * Thursday, December 11, 1997
+ * Programmer: Robb Matzke
+ * Thursday, December 11, 1997
*
*-------------------------------------------------------------------------
*/
int
H5Sget_simple_extent_ndims(hid_t space_id)
{
- H5S_t *ds;
- int ret_value; /* Return value */
+ H5S_t *ds;
+ int ret_value = -1;
- FUNC_ENTER_API(FAIL)
+ FUNC_ENTER_API((-1))
H5TRACE1("Is", "i", space_id);
/* Check args */
if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace")
ret_value = (int)H5S_GET_EXTENT_NDIMS(ds);
@@ -916,18 +922,19 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_simple_extent_ndims() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_get_simple_extent_ndims
*
- * Purpose: Returns the number of dimensions in a dataspace.
+ * Purpose: Returns the number of dimensions in a dataspace.
+ *
+ * Return: Success: Non-negative number of dimensions.
+ * Zero implies a scalar.
*
- * Return: Success: Non-negative number of dimensions. Zero
- * implies a scalar.
- * Failure: Negative
+ * Failure: Negative
*
- * Programmer: Robb Matzke
- * Thursday, December 11, 1997
+ * Programmer: Robb Matzke
+ * hursday, December 11, 1997
*
* Note: This routine participates in the "Inlining C function pointers"
* pattern, don't call it directly, use the appropriate macro
@@ -938,7 +945,7 @@ done:
int
H5S_get_simple_extent_ndims(const H5S_t *ds)
{
- int ret_value = -1; /* Return value */
+ int ret_value = -1; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -962,35 +969,35 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_simple_extent_ndims() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sget_simple_extent_dims
*
- * Purpose: Returns the size and maximum sizes in each dimension of
- * a dataspace DS through the DIMS and MAXDIMS arguments.
+ * Purpose: Returns the size and maximum sizes in each dimension of
+ * a dataspace DS through the DIMS and MAXDIMS arguments.
*
- * Return: Success: Number of dimensions, the same value as
- * returned by H5Sget_simple_extent_ndims().
- * Failure: Negative
+ * Return: Success: Number of dimensions, the same value as
+ * returned by H5Sget_simple_extent_ndims().
*
- * Programmer: Robb Matzke
- * Thursday, December 11, 1997
+ * Failure: Negative
+ *
+ * Programmer: Robb Matzke
+ * Thursday, December 11, 1997
*
*-------------------------------------------------------------------------
*/
int
-H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/,
- hsize_t maxdims[]/*out*/)
+H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[]/*out*/, hsize_t maxdims[]/*out*/)
{
- H5S_t *ds;
- int ret_value; /* Return value */
+ H5S_t *ds;
+ int ret_value = -1;
- FUNC_ENTER_API(FAIL)
+ FUNC_ENTER_API((-1))
H5TRACE3("Is", "ixx", space_id, dims, maxdims);
/* Check args */
if(NULL == (ds = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "not a dataspace")
ret_value = H5S_get_simple_extent_dims(ds, dims, maxdims);
@@ -998,26 +1005,26 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_simple_extent_dims() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_extent_get_dims
*
- * Purpose: Returns the size in each dimension of a dataspace. This
- * function may not be meaningful for all types of dataspaces.
+ * Purpose: Returns the size in each dimension of a dataspace. This
+ * function may not be meaningful for all types of dataspaces.
*
- * Return: Success: Number of dimensions. Zero implies scalar.
- * Failure: Negative
+ * Return: Success: Number of dimensions. Zero implies scalar.
+ * Failure: Negative
*
- * Programmer: Quincey Koziol
- * Tuesday, June 30, 2009
+ * Programmer: Quincey Koziol
+ * Tuesday, June 30, 2009
*
*-------------------------------------------------------------------------
*/
int
H5S_extent_get_dims(const H5S_extent_t *ext, hsize_t dims[], hsize_t max_dims[])
{
- int i; /* Local index variable */
- int ret_value = -1; /* Return value */
+ int i; /* Local index variable */
+ int ret_value = -1; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -1054,25 +1061,25 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_extent_get_dims() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_get_simple_extent_dims
*
- * Purpose: Returns the size in each dimension of a dataspace. This
- * function may not be meaningful for all types of dataspaces.
+ * Purpose: Returns the size in each dimension of a dataspace. This
+ * function may not be meaningful for all types of dataspaces.
*
- * Return: Success: Number of dimensions. Zero implies scalar.
- * Failure: Negative
+ * Return: Success: Number of dimensions. Zero implies scalar.
+ * Failure: Negative
*
- * Programmer: Robb Matzke
- * Thursday, December 11, 1997
+ * Programmer: Robb Matzke
+ * Thursday, December 11, 1997
*
*-------------------------------------------------------------------------
*/
int
H5S_get_simple_extent_dims(const H5S_t *ds, hsize_t dims[], hsize_t max_dims[])
{
- int ret_value = -1; /* Return value */
+ int ret_value = -1; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
@@ -1087,17 +1094,17 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_simple_extent_dims() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_write
*
- * Purpose: Updates a dataspace by writing a message to an object
- * header.
+ * Purpose: Updates a dataspace by writing a message to an object
+ * header.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
@@ -1121,17 +1128,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_write() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_append
*
- * Purpose: Updates a dataspace by adding a message to an object
- * header.
+ * Purpose: Updates a dataspace by adding a message to an object header.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
- * Tuesday, December 31, 2002
+ * Programmer: Quincey Koziol
+ * Tuesday, December 31, 2002
*
*-------------------------------------------------------------------------
*/
@@ -1155,24 +1161,25 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_append() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_read
*
- * Purpose: Reads the dataspace from an object header.
+ * Purpose: Reads the dataspace from an object header.
+ *
+ * Return: Success: Pointer to a new dataspace.
*
- * Return: Success: Pointer to a new dataspace.
- * Failure: NULL
+ * Failure: NULL
*
- * Programmer: Robb Matzke
- * Tuesday, December 9, 1997
+ * Programmer: Robb Matzke
+ * Tuesday, December 9, 1997
*
*-------------------------------------------------------------------------
*/
H5S_t *
H5S_read(const H5O_loc_t *loc)
{
- H5S_t *ds = NULL; /* Dataspace to return */
+ H5S_t *ds = NULL; /* Dataspace to return */
H5S_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI(NULL)
@@ -1201,7 +1208,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_read() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__is_simple
@@ -1233,7 +1240,7 @@ H5S__is_simple(const H5S_t *sdim)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__is_simple() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sis_simple
@@ -1241,7 +1248,7 @@ H5S__is_simple(const H5S_t *sdim)
Check if a dataspace is simple
USAGE
htri_t H5Sis_simple(space_id)
- hid_t space_id; IN: ID of dataspace object to query
+ hid_t space_id; IN: ID of dataspace object to query
RETURNS
TRUE/FALSE/FAIL
DESCRIPTION
@@ -1251,15 +1258,15 @@ H5S__is_simple(const H5S_t *sdim)
htri_t
H5Sis_simple(hid_t space_id)
{
- H5S_t *space; /* Dataspace to check */
- htri_t ret_value; /* Return value */
+ H5S_t *space; /* Dataspace to check */
+ htri_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("t", "i", space_id);
/* Check args and all the boring stuff. */
if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "not a dataspace")
ret_value = H5S__is_simple(space);
@@ -1267,7 +1274,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sis_simple() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sset_extent_simple
@@ -1275,11 +1282,11 @@ done:
Sets the size of a simple dataspace
USAGE
herr_t H5Sset_extent_simple(space_id, rank, dims, max)
- hid_t space_id; IN: Dataspace object to query
- int rank; IN: # of dimensions for the dataspace
- const size_t *dims; IN: Size of each dimension for the dataspace
- const size_t *max; IN: Maximum size of each dimension for the
- dataspace
+ hid_t space_id; IN: Dataspace object to query
+ int rank; IN: # of dimensions for the dataspace
+ const size_t *dims; IN: Size of each dimension for the dataspace
+ const size_t *max; IN: Maximum size of each dimension for the
+ dataspace
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
@@ -1298,8 +1305,8 @@ herr_t
H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/],
const hsize_t max[/*rank*/])
{
- H5S_t *space; /* Dataspace to modify */
- int u; /* Local counting variable */
+ H5S_t *space; /* Dataspace to modify */
+ int u; /* Local counting variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
@@ -1322,26 +1329,25 @@ H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[/*rank*/],
for(u = 0; u < rank; u++)
if(max[u] != H5S_UNLIMITED && max[u] < dims[u])
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid maximum dimension size")
- } /* end if */
+ }
/* Do it */
if(H5S_set_extent_simple(space, (unsigned)rank, dims, max) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to set simple extent")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sset_extent_simple() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_set_extent_simple
*
- * Purpose: This is where the real work happens for
- * H5Sset_extent_simple().
+ * Purpose: This is where the real work happens for H5Sset_extent_simple().
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
+ * Programmer: Robb Matzke
* Wednesday, July 8, 1998
*
*-------------------------------------------------------------------------
@@ -1362,10 +1368,10 @@ H5S_set_extent_simple(H5S_t *space, unsigned rank, const hsize_t *dims,
if(H5S__extent_release(&space->extent) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "failed to release previous dataspace extent")
- if(rank == 0) { /* scalar variable */
+ if(rank == 0) { /* scalar variable */
space->extent.type = H5S_SCALAR;
space->extent.nelem = 1;
- space->extent.rank = 0; /* set to scalar rank */
+ space->extent.rank = 0; /* set to scalar rank */
} /* end if */
else {
hsize_t nelem; /* Number of elements in extent */
@@ -1408,91 +1414,90 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_set_extent_simple() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Screate_simple
*
- * Purpose: Creates a new simple dataspace object and opens it for
- * access. The DIMS argument is the size of the simple dataset
- * and the MAXDIMS argument is the upper limit on the size of
- * the dataset. MAXDIMS may be the null pointer in which case
- * the upper limit is the same as DIMS. If an element of
- * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is
- * unlimited, otherwise no element of MAXDIMS should be smaller
- * than the corresponding element of DIMS.
+ * Purpose: Creates a new simple dataspace object and opens it for
+ * access. The DIMS argument is the size of the simple dataset
+ * and the MAXDIMS argument is the upper limit on the size of
+ * the dataset. MAXDIMS may be the null pointer in which case
+ * the upper limit is the same as DIMS. If an element of
+ * MAXDIMS is H5S_UNLIMITED then the corresponding dimension is
+ * unlimited, otherwise no element of MAXDIMS should be smaller
+ * than the corresponding element of DIMS.
+ *
+ * Return: Success: The ID for the new simple dataspace object.
*
- * Return: Success: The ID for the new simple dataspace object.
- * Failure: Negative
+ * Failure: H5I_INVALID_HID
*
- * Programmer: Quincey Koziol
- * Tuesday, January 27, 1998
+ * Programmer: Quincey Koziol
+ * Tuesday, January 27, 1998
*
*-------------------------------------------------------------------------
*/
hid_t
-H5Screate_simple(int rank, const hsize_t dims[/*rank*/],
- const hsize_t maxdims[/*rank*/])
+H5Screate_simple(int rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/])
{
- H5S_t *space = NULL;
- int i;
- hid_t ret_value; /* Return value */
+ H5S_t *space = NULL;
+ int i;
+ hid_t ret_value = H5I_INVALID_HID;
- FUNC_ENTER_API(FAIL)
+ FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE3("i", "Is*[a0]h*[a0]h", rank, dims, maxdims);
/* Check arguments */
if(rank < 0)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality cannot be negative")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality cannot be negative")
if(rank > H5S_MAX_RANK)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dimensionality is too large")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "dimensionality is too large")
/* We allow users to use this function to create scalar or null dataspace.
* Check DIMS isn't set when the RANK is 0.
*/
if(!dims && rank != 0)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid dataspace information")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid dataspace information")
/* Check whether the current dimensions are valid */
for(i = 0; i < rank; i++) {
if(H5S_UNLIMITED == dims[i])
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "current dimension must have a specific size, not H5S_UNLIMITED")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "current dimension must have a specific size, not H5S_UNLIMITED")
if(maxdims && H5S_UNLIMITED != maxdims[i] && maxdims[i]<dims[i])
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "maxdims is smaller than dims")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "maxdims is smaller than dims")
} /* end for */
/* Create the space and set the extent */
if(NULL == (space = H5S_create_simple((unsigned)rank, dims, maxdims)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, H5I_INVALID_HID, "can't create simple dataspace")
/* Atomize */
if((ret_value = H5I_register (H5I_DATASPACE, space, TRUE)) < 0)
- HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register dataspace ID")
+ HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace ID")
done:
if(ret_value < 0)
if(space && H5S_close(space) < 0)
- HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
+ HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, H5I_INVALID_HID, "unable to release dataspace")
FUNC_LEAVE_API(ret_value)
} /* end H5Screate_simple() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_create_simple
*
- * Purpose: Internal function to create simple dataspace
+ * Purpose: Internal function to create simple dataspace
*
- * Return: Success: The ID for the new simple dataspace object.
- * Failure: Negative
+ * Return: Success: A pointer to a dataspace object
+ * Failure: NULL
*
- * Programmer: Quincey Koziol
- * Thursday, April 3, 2003
+ * Programmer: Quincey Koziol
+ * Thursday, April 3, 2003
*
*-------------------------------------------------------------------------
*/
H5S_t *
-H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/],
- const hsize_t maxdims[/*rank*/])
+H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/])
{
H5S_t *ret_value = NULL; /* Return value */
@@ -1511,20 +1516,19 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_create_simple() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sencode2
*
- * Purpose: Given a dataspace ID, converts the object description
+ * Purpose: Given a dataspace ID, converts the object description
* (including selection) into binary in a buffer.
- * The selection will be encoded according to the file
- * format setting in fapl.
+ * The selection will be encoded according to the file
+ * format setting in the fapl.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: Non-negative
+ * Failure: Negative
*
- * Programmer: Raymond Lu
- * slu@ncsa.uiuc.edu
+ * Programmer: Raymond Lu
* July 14, 2004
*
*-------------------------------------------------------------------------
@@ -1540,33 +1544,30 @@ H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl_id)
/* Check argument and retrieve object */
if(NULL == (dspace = (H5S_t *)H5I_object_verify(obj_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
- /* Verify access property list and set up collective metadata if appropriate */
+ /* Verify access property list and set up collective metadata if appropriate */
if(H5CX_set_apl(&fapl_id, H5P_CLS_FACC, H5I_INVALID_HID, TRUE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info")
-
if(H5S_encode(dspace, (unsigned char **)&buf, nalloc) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTENCODE, FAIL, "can't encode dataspace")
done:
FUNC_LEAVE_API(ret_value)
-} /* H5Sencode2() */
-
+} /* end H5Sencode2() */
+
/*-------------------------------------------------------------------------
* Function: H5S_encode
*
- * Purpose: Private function for H5Sencode. Converts an object
+ * Purpose: Private function for H5Sencode. Converts an object
* description for dataspace and its selection into binary
* in a buffer.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: SUCCEED/FAIL
*
- * Programmer: Raymond Lu
- * slu@ncsa.uiuc.edu
+ * Programmer: Raymond Lu
* July 14, 2004
*
*-------------------------------------------------------------------------
@@ -1584,15 +1585,15 @@ H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc)
/* Allocate "fake" file structure */
if(NULL == (f = H5F_fake_alloc((uint8_t)0)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL, "can't allocate fake file struct")
/* Find out the size of buffer needed for extent */
if((extent_size = H5O_msg_raw_size(f, H5O_SDSPACE_ID, TRUE, obj)) == 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace size")
/* Find out the size of buffer needed for selection */
if((sselect_size = H5S_SELECT_SERIAL_SIZE(obj)) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADSIZE, FAIL, "can't find dataspace selection size")
H5_CHECKED_ASSIGN(select_size, size_t, sselect_size, hssize_t);
/* Verify the size of buffer. If it's not big enough, simply return the
@@ -1633,18 +1634,18 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_encode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sdecode
*
- * Purpose: Decode a binary object description of dataspace and
+ * Purpose: Decode a binary object description of dataspace and
* return a new object handle.
*
- * Return: Success: dataspace ID(non-negative)
- * Failure: negative
+ * Return: Success: dataspace ID(non-negative)
+ *
+ * Failure: H5I_INVALID_HID
*
- * Programmer: Raymond Lu
- * slu@ncsa.uiuc.edu
+ * Programmer: Raymond Lu
* July 14, 2004
*
*-------------------------------------------------------------------------
@@ -1655,35 +1656,35 @@ H5Sdecode(const void *buf)
H5S_t *ds;
hid_t ret_value;
- FUNC_ENTER_API(FAIL)
+ FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "*x", buf);
if(buf == NULL)
- HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "empty buffer")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "empty buffer")
if((ds = H5S_decode((const unsigned char **)&buf)) == NULL)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, FAIL, "can't decode object")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, H5I_INVALID_HID, "can't decode object")
/* Register the type and return the ID */
if((ret_value = H5I_register(H5I_DATASPACE, ds, TRUE)) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, FAIL, "unable to register dataspace")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataspace")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sdecode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_decode
*
- * Purpose: Private function for H5Sdecode. Reconstructs a binary
+ * Purpose: Private function for H5Sdecode. Reconstructs a binary
* description of dataspace and returns a new object handle.
*
- * Return: Success: dataspace ID(non-negative)
- * Failure: negative
+ * Return: Success: Pointer to a dataspace buffer
+ *
+ * Failure: NULL
*
- * Programmer: Raymond Lu
- * slu@ncsa.uiuc.edu
+ * Programmer: Raymond Lu
* July 14, 2004
*
*-------------------------------------------------------------------------
@@ -1703,18 +1704,18 @@ H5S_decode(const unsigned char **p)
/* Decode the type of the information */
if(*pp++ != H5O_SDSPACE_ID)
- HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_BADMESG, NULL, "not an encoded dataspace")
/* Decode the version of the dataspace information */
if(*pp++ != H5S_ENCODE_VERSION)
- HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_VERSION, NULL, "unknown version of encoded dataspace")
/* Decode the "size of size" information */
sizeof_size = *pp++;
/* Allocate "fake" file structure */
if(NULL == (f = H5F_fake_alloc(sizeof_size)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, NULL, "can't allocate fake file struct")
/* Decode size of extent information */
UINT32DECODE(pp, extent_size);
@@ -1729,7 +1730,7 @@ H5S_decode(const unsigned char **p)
if(NULL == (ds = H5FL_CALLOC(H5S_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for dataspace conversion path table")
if(NULL == H5O_msg_copy(H5O_SDSPACE_ID, extent, &(ds->extent)))
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, NULL, "can't copy object")
if(H5S__extent_release(extent) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, NULL, "can't release previous dataspace")
extent = H5FL_FREE(H5S_extent_t, extent);
@@ -1754,17 +1755,18 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_decode() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_get_simple_extent_type
*
- * Purpose: Internal function for retrieving the type of extent for a dataspace object
+ * Purpose: Internal function for retrieving the type of extent for a dataspace object
+ *
+ * Return: Success: The class of the dataspace object
*
- * Return: Success: The class of the dataspace object
- * Failure: N5S_NO_CLASS
+ * Failure: N5S_NO_CLASS
*
- * Programmer: Quincey Koziol
- * Thursday, September 28, 2000
+ * Programmer: Quincey Koziol
+ * Thursday, September 28, 2000
*
* Note: This routine participates in the "Inlining C function pointers"
* pattern, don't call it directly, use the appropriate macro
@@ -1775,7 +1777,7 @@ done:
H5S_class_t
H5S_get_simple_extent_type(const H5S_t *space)
{
- H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */
+ H5S_class_t ret_value = H5S_NO_CLASS; /* Return value */
FUNC_ENTER_NOAPI(H5S_NO_CLASS)
@@ -1787,25 +1789,26 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_get_simple_extent_type() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sget_simple_extent_type
*
- * Purpose: Retrieves the type of extent for a dataspace object
+ * Purpose: Retrieves the type of extent for a dataspace object
*
- * Return: Success: The class of the dataspace object
- * Failure: N5S_NO_CLASS
+ * Return: Success: The class of the dataspace object
*
- * Programmer: Quincey Koziol
- * Thursday, July 23, 1998
+ * Failure: N5S_NO_CLASS
+ *
+ * Programmer: Quincey Koziol
+ * Thursday, July 23, 1998
*
*-------------------------------------------------------------------------
*/
H5S_class_t
H5Sget_simple_extent_type(hid_t sid)
{
- H5S_t *space;
- H5S_class_t ret_value; /* Return value */
+ H5S_t *space;
+ H5S_class_t ret_value; /* Return value */
FUNC_ENTER_API(H5S_NO_CLASS)
H5TRACE1("Sc", "i", sid);
@@ -1820,7 +1823,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_simple_extent_type() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sset_extent_none
@@ -1828,18 +1831,18 @@ done:
Resets the extent of a dataspace back to "none"
USAGE
herr_t H5Sset_extent_none(space_id)
- hid_t space_id; IN: Dataspace object to reset
+ hid_t space_id; IN: Dataspace object to reset
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
- This function resets the type of a dataspace back to "none" with no
+ This function resets the type of a dataspace to H5S_NULL with no
extent information stored for the dataspace.
--------------------------------------------------------------------------*/
herr_t
H5Sset_extent_none(hid_t space_id)
{
- H5S_t *space; /* Dataspace to modify */
- herr_t ret_value = SUCCEED; /* Return value */
+ H5S_t *space; /* Dataspace to modify */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", space_id);
@@ -1852,22 +1855,21 @@ H5Sset_extent_none(hid_t space_id)
if(H5S__extent_release(&space->extent) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTDELETE, FAIL, "can't release previous dataspace")
- space->extent.type = H5S_NO_CLASS;
+ space->extent.type = H5S_NULL;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sset_extent_none() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_set_extent
*
* Purpose: Modify the dimensions of a dataspace.
*
- * Return: Success: Non-negative
- * Failure: Negative
+ * Return: TRUE/FALSE/FAIL
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
* March 13, 2002
*
*-------------------------------------------------------------------------
@@ -1905,7 +1907,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_set_extent() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_has_extent
*
@@ -1938,7 +1940,7 @@ H5S_has_extent(const H5S_t *ds)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_has_extent() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_set_extent_real
*
@@ -1947,7 +1949,7 @@ H5S_has_extent(const H5S_t *ds)
* Return: Success: Non-negative
* Failure: Negative
*
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
* March 13, 2002
*
*-------------------------------------------------------------------------
@@ -1985,25 +1987,27 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_set_extent_real() */
-
+
/*-------------------------------------------------------------------------
* Function: H5Sextent_equal
*
- * Purpose: Determines if two dataspace extents are equal.
+ * Purpose: Determines if two dataspace extents are equal.
+ *
+ * Return: Success: TRUE if equal, FALSE if unequal
*
- * Return: Success: TRUE if equal, FALSE if unequal
- * Failure: Negative
+ * Failure: FAIL
*
- * Programmer: Quincey Koziol
- * Monday, October 24, 2005
+ * Programmer: Quincey Koziol
+ * Monday, October 24, 2005
*
*-------------------------------------------------------------------------
*/
htri_t
H5Sextent_equal(hid_t space1_id, hid_t space2_id)
{
- const H5S_t *ds1, *ds2; /* Dataspaces to compare */
- htri_t ret_value; /* Return value */
+ const H5S_t *ds1; /* Dataspaces to compare */
+ const H5S_t *ds2;
+ htri_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE2("t", "ii", space1_id, space2_id);
@@ -2011,17 +2015,17 @@ H5Sextent_equal(hid_t space1_id, hid_t space2_id)
/* check args */
if(NULL == (ds1 = (const H5S_t *)H5I_object_verify(space1_id, H5I_DATASPACE)) ||
NULL == (ds2 = (const H5S_t *)H5I_object_verify(space2_id, H5I_DATASPACE)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
/* Check dataspaces for extent's equality */
if((ret_value = H5S_extent_equal(ds1, ds2)) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "dataspace comparison failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sextent_equal() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_extent_equal
@@ -2082,17 +2086,17 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_extent_equal() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_extent_nelem
*
- * Purpose: Determines how many elements a dataset extent describes.
+ * Purpose: Determines how many elements a dataset extent describes.
*
- * Return: Success: Number of data points in the dataset extent.
- * Failure: negative
+ * Return: Success: Number of data points in the dataset extent.
+ * Failure: Negative
*
- * Programmer: Quincey Koziol
- * Thursday, November 30, 2006
+ * Programmer: Quincey Koziol
+ * Thursday, November 30, 2006
*
*-------------------------------------------------------------------------
*/
@@ -2108,7 +2112,7 @@ H5S_extent_nelem(const H5S_extent_t *ext)
FUNC_LEAVE_NOAPI(ext->nelem)
} /* end H5S_extent_nelem() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S_set_version
*
diff --git a/src/H5Sall.c b/src/H5Sall.c
index 8290ae2..9026e7c 100644
--- a/src/H5Sall.c
+++ b/src/H5Sall.c
@@ -29,7 +29,7 @@
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
+#include "H5Eprivate.h" /* Error handling */
#include "H5Iprivate.h" /* ID Functions */
#include "H5Spkg.h" /* Dataspace functions */
#include "H5VMprivate.h" /* Vector functions */
@@ -599,7 +599,7 @@ H5S__all_serial_size(const H5S_t H5_ATTR_UNUSED *space)
PURPOSE
Serialize the current selection into a user-provided buffer.
USAGE
- herr_t H5S_all_serialize(space, p)
+ herr_t H5S__all_serialize(space, p)
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -627,8 +627,8 @@ H5S__all_serialize(const H5S_t *space, uint8_t **p)
HDassert(pp);
/* Store the preamble information */
- UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
- UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */
+ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
+ UINT32ENCODE(pp, (uint32_t)H5S_ALL_VERSION_1); /* Store the version number */
UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */
UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */
diff --git a/src/H5Sdbg.c b/src/H5Sdbg.c
index 8171191..32f5295 100644
--- a/src/H5Sdbg.c
+++ b/src/H5Sdbg.c
@@ -13,11 +13,12 @@
/*-------------------------------------------------------------------------
*
- * Created: H5Sdbg.c
- * Jul 24 2007
- * Quincey Koziol <koziol@hdfgroup.org>
+ * Created: H5Sdbg.c
+ * Quincey Koziol
+ * Jul 24 2007
+ *
*
- * Purpose: Dump debugging information about a dataspace
+ * Purpose: Dump debugging information about a dataspace
*
*-------------------------------------------------------------------------
*/
@@ -32,9 +33,9 @@
/***********/
/* Headers */
/***********/
-#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5Spkg.h" /* Dataspaces */
+#include "H5private.h" /* Generic Functions */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5Spkg.h" /* Dataspaces */
/****************/
@@ -74,13 +75,13 @@
/*-------------------------------------------------------------------------
- * Function: H5S_debug
+ * Function: H5S_debug
*
- * Purpose: Prints debugging information about a dataspace.
+ * Purpose: Prints debugging information about a dataspace.
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Robb Matzke
+ * Programmer: Robb Matzke
* Tuesday, July 21, 1998
*
*-------------------------------------------------------------------------
@@ -88,7 +89,7 @@
herr_t
H5S_debug(H5F_t *f, const void *_mesg, FILE *stream, int indent, int fwidth)
{
- const H5S_t *mesg = (const H5S_t*)_mesg;
+ const H5S_t *mesg = (const H5S_t*)_mesg;
FUNC_ENTER_NOAPI_NOINIT_NOERR
diff --git a/src/H5Shyper.c b/src/H5Shyper.c
index b352374..9f75785 100644
--- a/src/H5Shyper.c
+++ b/src/H5Shyper.c
@@ -12,10 +12,10 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Programmer: Quincey Koziol
* Thursday, June 18, 1998
*
- * Purpose: Hyperslab selection dataspace I/O functions.
+ * Purpose: Hyperslab selection dataspace I/O functions.
*/
/****************/
@@ -30,8 +30,8 @@
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5FLprivate.h" /* Free Lists */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* ID Functions */
#include "H5MMprivate.h" /* Memory management */
#include "H5Spkg.h" /* Dataspace functions */
@@ -304,7 +304,7 @@ H5FL_EXTERN(H5S_sel_iter_t);
static uint64_t H5S_hyper_op_gen_g = 1;
-/* Uncomment this, to provide the debugging routines for printing selection info */
+/* Uncomment this to provide the debugging routines for printing selection info */
/* #define H5S_HYPER_DEBUG */
#ifdef H5S_HYPER_DEBUG
static herr_t
@@ -385,7 +385,7 @@ H5S__hyper_print_diminfo(FILE *f, const H5S_t *space)
FUNC_LEAVE_NOAPI(SUCCEED)
}
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_print_spans_dfs
@@ -531,7 +531,7 @@ H5S__hyper_print_space_dfs(FILE *f, const H5S_t *space)
} /* end H5S__hyper_print_space_dfs() */
#endif /* H5S_HYPER_DEBUG */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_get_op_gen
*
@@ -555,15 +555,15 @@ H5S__hyper_get_op_gen(void)
FUNC_LEAVE_NOAPI(H5S_hyper_op_gen_g++);
} /* end H5S__hyper_op_gen() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_init
*
- * Purpose: Initializes iteration information for hyperslab selection.
+ * Purpose: Initializes iteration information for hyperslab selection.
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Saturday, February 24, 2001
*
* Notes: If the 'iter->elmt_size' field is set to zero, the regular
@@ -794,16 +794,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_iter_init() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_coords
*
- * Purpose: Retrieve the current coordinates of iterator for current
+ * Purpose: Retrieve the current coordinates of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, April 22, 2003
*
*-------------------------------------------------------------------------
@@ -879,16 +879,16 @@ H5S__hyper_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_coords() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_block
*
- * Purpose: Retrieve the current block of iterator for current
+ * Purpose: Retrieve the current block of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Monday, June 2, 2003
*
* Notes: This routine assumes that the iterator is always located at
@@ -916,28 +916,28 @@ H5S__hyper_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end)
for(u = 0; u < iter->rank; u++) {
start[u] = iter->u.hyp.off[u];
end[u] = (start[u] + iter->u.hyp.diminfo[u].block) - 1;
- } /* end for */
+ }
} /* end if */
else {
/* Copy the start & end of the block */
for(u = 0; u < iter->rank; u++) {
start[u] = iter->u.hyp.span[u]->low;
end[u] = iter->u.hyp.span[u]->high;
- } /* end for */
+ }
} /* end else */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_block() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_nelmts
*
- * Purpose: Return number of elements left to process in iterator
+ * Purpose: Return number of elements left to process in iterator
*
- * Return: Non-negative number of elements on success, zero on failure
+ * Return: Non-negative number of elements on success, zero on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 16, 1998
*
*-------------------------------------------------------------------------
@@ -953,7 +953,7 @@ H5S__hyper_iter_nelmts(const H5S_sel_iter_t *iter)
FUNC_LEAVE_NOAPI(iter->elmt_left)
} /* end H5S__hyper_iter_nelmts() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_has_next_block
@@ -1009,17 +1009,17 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_iter_has_next_block() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_next
*
- * Purpose: Moves a hyperslab iterator to the beginning of the next sequence
- * of elements to read. Handles walking off the end in all dimensions.
+ * Purpose: Moves a hyperslab iterator to the beginning of the next sequence
+ * of elements to read. Handles walking off the end in all dimensions.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Friday, September 8, 2000
*
*-------------------------------------------------------------------------
@@ -1216,17 +1216,17 @@ H5S__hyper_iter_next(H5S_sel_iter_t *iter, size_t nelem)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_next() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__hyper_iter_next_block
*
- * Purpose: Moves a hyperslab iterator to the beginning of the next sequence
- * of elements to read. Handles walking off the end in all dimensions.
+ * Purpose: Moves a hyperslab iterator to the beginning of the next sequence
+ * of elements to read. Handles walking off the end in all dimensions.
*
- * Return: Success: non-negative
- * Failure: negative
+ * Return: Success: non-negative
+ * Failure: negative
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 3, 2003
*
*-------------------------------------------------------------------------
@@ -1391,7 +1391,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_next_block() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_get_seq_list_gen
@@ -1409,7 +1409,7 @@ H5S__hyper_iter_next_block(H5S_sel_iter_t *iter)
hsize_t *off; OUT: Array of offsets
size_t *len; OUT: Array of lengths
RETURNS
- Non-negative on success/Negative on failure.
+ Non-negative on success/Negative on failure
DESCRIPTION
Use the selection in the dataspace to generate a list of byte offsets and
lengths for the region(s) selected. Start/Restart from the position in the
@@ -1756,7 +1756,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max
/* Work back up through the dimensions */
while(curr_dim >= 0) {
/* Reset the current span */
- curr_span = ispan[curr_dim];
+ curr_span = ispan[curr_dim];
/* Increment absolute position */
abs_arr[curr_dim]++;
@@ -1843,7 +1843,7 @@ H5S__hyper_iter_get_seq_list_gen(H5S_sel_iter_t *iter, size_t maxseq, size_t max
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_get_seq_list_gen() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_get_seq_list_opt
@@ -2110,15 +2110,15 @@ H5S__hyper_iter_get_seq_list_opt(H5S_sel_iter_t *iter, size_t maxseq, size_t max
/* Read in data until an entire sequence can't be written out any longer */
while(curr_rows > 0) {
-#define DUFF_GUTS \
-/* Store the sequence information */ \
-off[curr_seq] = loc; \
-len[curr_seq] = actual_bytes; \
- \
-/* Increment sequence count */ \
-curr_seq++; \
- \
-/* Increment information to reflect block just processed */ \
+#define DUFF_GUTS \
+/* Store the sequence information */ \
+off[curr_seq] = loc; \
+len[curr_seq] = actual_bytes; \
+ \
+/* Increment sequence count */ \
+curr_seq++; \
+ \
+/* Increment information to reflect block just processed */ \
loc += fast_dim_buf_off;
#ifdef NO_DUFFS_DEVICE
@@ -2287,7 +2287,7 @@ loc += fast_dim_buf_off;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_get_seq_list_opt() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_get_seq_list_single
@@ -2565,7 +2565,7 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_get_seq_list_single() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_get_seq_list
@@ -2574,7 +2574,6 @@ H5S__hyper_iter_get_seq_list_single(H5S_sel_iter_t *iter, size_t maxseq, size_t
USAGE
herr_t H5S__hyper_iter_get_seq_list(iter,maxseq,maxelem,nseq,nelem,off,len)
H5S_t *space; IN: Dataspace containing selection to use.
- unsigned flags; IN: Flags for extra information about operation
H5S_sel_iter_t *iter; IN/OUT: Selection iterator describing last
position of interest in selection.
size_t maxseq; IN: Maximum number of sequences to generate
@@ -2727,7 +2726,7 @@ H5S__hyper_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq,
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_iter_get_seq_list() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_iter_release
@@ -2760,7 +2759,7 @@ H5S__hyper_iter_release(H5S_sel_iter_t *iter)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_iter_release() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_new_span
@@ -2808,7 +2807,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_new_span() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_new_span_info
@@ -2851,7 +2850,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_new_span_info() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_copy_span_helper
@@ -2947,7 +2946,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_copy_span_helper() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_copy_span
@@ -2992,7 +2991,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_copy_span() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_cmp_spans
@@ -3013,8 +3012,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static H5_ATTR_PURE hbool_t
-H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1,
- const H5S_hyper_span_info_t *span_info2)
+H5S__hyper_cmp_spans(const H5S_hyper_span_info_t *span_info1, const H5S_hyper_span_info_t *span_info2)
{
hbool_t ret_value = TRUE; /* Return value */
@@ -3088,7 +3086,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_cmp_spans() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_free_span_info
@@ -3145,7 +3143,7 @@ H5S__hyper_free_span_info(H5S_hyper_span_info_t *span_info)
FUNC_LEAVE_NOAPI_VOID
} /* end H5S__hyper_free_span_info() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_free_span
@@ -3183,7 +3181,7 @@ H5S__hyper_free_span(H5S_hyper_span_t *span)
FUNC_LEAVE_NOAPI_VOID
} /* end H5S__hyper_free_span() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_copy
@@ -3258,7 +3256,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_copy() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_is_valid
@@ -3317,7 +3315,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_is_valid() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_span_nblocks_helper
@@ -3385,7 +3383,7 @@ H5S__hyper_span_nblocks_helper(H5S_hyper_span_info_t *spans, unsigned op_info_i,
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_span_nblocks_helper() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_span_nblocks
@@ -3426,7 +3424,7 @@ H5S__hyper_span_nblocks(H5S_hyper_span_info_t *spans)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_span_nblocks() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__get_select_hyper_nblocks
@@ -3463,7 +3461,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref)
/* Check each dimension */
for(ret_value = 1, u = 0; u < space->extent.rank; u++)
ret_value *= (app_ref ? space->select.sel_info.hslab->diminfo.app[u].count :
- space->select.sel_info.hslab->diminfo.opt[u].count);
+ space->select.sel_info.hslab->diminfo.opt[u].count);
} /* end if */
else
ret_value = H5S__hyper_span_nblocks(space->select.sel_info.hslab->span_lst);
@@ -3471,7 +3469,7 @@ H5S__get_select_hyper_nblocks(const H5S_t *space, hbool_t app_ref)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__get_select_hyper_nblocks() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sget_select_hyper_nblocks
@@ -3512,7 +3510,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_select_hyper_nblocks() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_get_enc_size_real
@@ -3707,13 +3705,13 @@ H5S__hyper_get_version_enc_size(const H5S_t *space, hsize_t block_count, uint32_
default:
HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "unknown hyperslab selection version")
break;
- } /* end switch */
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5S__hyper_get_version_enc_size() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_serial_size
@@ -3738,14 +3736,15 @@ H5S__hyper_serial_size(const H5S_t *space)
{
hsize_t block_count = 0; /* block counter for regular hyperslabs */
uint32_t version; /* Version number */
- uint8_t enc_size; /* Encoded size of hyerslab selection info */
+ uint8_t enc_size; /* Encoded size of hyperslab selection info */
hssize_t ret_value = -1; /* return value */
FUNC_ENTER_STATIC
HDassert(space);
- if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */
+ /* Determine the number of blocks */
+ if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */
block_count = H5S__get_select_hyper_nblocks(space, FALSE);
/* Determine the version and the encoded size */
@@ -3787,7 +3786,7 @@ H5S__hyper_serial_size(const H5S_t *space)
*/
HDassert(enc_size == 8);
ret_value = (hssize_t)17 + ((hssize_t)4 * (hssize_t)8 * (hssize_t)space->extent.rank);
- } /* end else-if */
+ }
else {
HDassert(version == H5S_HYPER_VERSION_1);
HDassert(enc_size == 4);
@@ -3807,7 +3806,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_serial_size() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_serialize_helper
@@ -3928,14 +3927,14 @@ H5S__hyper_serialize_helper(const H5S_hyper_span_info_t *spans,
FUNC_LEAVE_NOAPI_VOID
} /* end H5S__hyper_serialize_helper() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_serialize
PURPOSE
Serialize the current selection into a user-provided buffer.
USAGE
- herr_t H5S_hyper_serialize(space, p)
+ herr_t H5S__hyper_serialize(space, p)
const H5S_t *space; IN: Dataspace with selection to serialize
uint8_t **p; OUT: Pointer to buffer to put serialized
selection. Will be advanced to end of
@@ -3958,7 +3957,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p)
hsize_t offset[H5S_MAX_RANK]; /* Offset of element in dataspace */
hsize_t start[H5S_MAX_RANK]; /* Location of start of hyperslab */
hsize_t end[H5S_MAX_RANK]; /* Location of end of hyperslab */
- uint8_t *pp; /* Local pointer for decoding */
+ uint8_t *pp; /* Local pointer for encoding */
uint8_t *lenp = NULL; /* pointer to length location for later storage */
uint32_t len = 0; /* number of bytes used */
uint32_t version; /* Version number */
@@ -3969,7 +3968,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p)
unsigned u; /* Local counting variable */
hbool_t complete = FALSE; /* Whether we are done with the iteration */
hbool_t is_regular; /* Whether selection is regular */
- uint8_t enc_size;
+ uint8_t enc_size; /* Encoded size */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_STATIC
@@ -3984,7 +3983,8 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p)
ndims = space->extent.rank;
diminfo = space->select.sel_info.hslab->diminfo.opt;
- if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */
+ /* Calculate the # of blocks */
+ if(space->select.sel_info.hslab->unlim_dim < 0) /* ! H5S_UNLIMITED */
block_count = H5S__get_select_hyper_nblocks(space, FALSE);
/* Determine the version and the encoded size */
@@ -4120,7 +4120,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p)
tmp_count[fast_dim]--;
} /* end while */
- /* Work on other dimensions if necessary */
+ /* Work on other dimensions if necessary */
if(fast_dim > 0) {
int temp_dim; /* Temporary rank holder */
@@ -4141,7 +4141,7 @@ H5S__hyper_serialize(const H5S_t *space, uint8_t **p)
if(temp_dim == 0)
complete = TRUE;
- /* Reset the block count in this dimension */
+ /* Reset the block count in this dimension */
tmp_count[temp_dim] = diminfo[temp_dim].count;
/* Wrapped a dimension, go up to next dimension */
@@ -4204,7 +4204,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_serialize() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_deserialize
@@ -4284,7 +4284,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p)
/* Check for unknown flags */
if(flags & ~H5S_SELECT_FLAG_BITS)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "unknown flag for selection")
- } /* end if */
+ }
else {
/* Skip over the remainder of the header */
pp += 8;
@@ -4300,7 +4300,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p)
if(!*space) {
/* Patch the rank of the allocated dataspace */
- (void)HDmemset(dims, 0, (size_t)rank * sizeof(dims[0]));
+ HDmemset(dims, 0, (size_t)rank * sizeof(dims[0]));
if(H5S_set_extent_simple(tmp_space, rank, dims, NULL) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't set dimensions")
} /* end if */
@@ -4315,7 +4315,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p)
/* Sanity checks */
HDassert(H5S_UNLIMITED == HSIZE_UNDEF);
- HDassert(version >= 2);
+ HDassert(version >= H5S_HYPER_VERSION_2);
/* Decode start/stride/block/count */
switch(enc_size) {
@@ -4383,7 +4383,7 @@ H5S__hyper_deserialize(H5S_t **space, const uint8_t **p)
size_t num_elem; /* Number of elements in selection */
unsigned v; /* Local counting variable */
- /* decode the number of blocks */
+ /* Decode the number of blocks */
switch(enc_size) {
case H5S_SELECT_INFO_ENC_SIZE_2:
UINT16DECODE(pp, num_elem);
@@ -4461,7 +4461,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_deserialize() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_span_blocklist
@@ -4566,7 +4566,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_span_blocklist() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__get_select_hyper_blocklist
@@ -4748,7 +4748,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock,
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__get_select_hyper_blocklist() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sget_select_hyper_blocklist
@@ -4761,7 +4761,7 @@ H5S__get_select_hyper_blocklist(H5S_t *space, hsize_t startblock,
hsize_t numblocks; IN: Number of hyperslab blocks to get
hsize_t buf[]; OUT: List of hyperslab blocks selected
RETURNS
- Non-negative on success/Negative on failure
+ Non-negative on success, negative on failure
DESCRIPTION
Puts a list of the hyperslab blocks into the user's buffer. The blocks
start with the 'startblock'th block in the list of blocks and put
@@ -4809,7 +4809,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_select_hyper_blocklist() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_bounds
@@ -4890,7 +4890,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_bounds() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_offset
@@ -4999,7 +4999,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_offset() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_unlim_dim
@@ -5026,7 +5026,7 @@ H5S__hyper_unlim_dim(const H5S_t *space)
FUNC_LEAVE_NOAPI(space->select.sel_info.hslab->unlim_dim);
} /* end H5S__hyper_unlim_dim() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_num_elem_non_unlim
@@ -5068,7 +5068,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_num_elem_non_unlim() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_is_contiguous
@@ -5254,7 +5254,7 @@ H5S__hyper_is_contiguous(const H5S_t *space)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_is_contiguous() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_is_single
@@ -5327,7 +5327,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_is_single() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_is_regular
@@ -5372,7 +5372,7 @@ H5S__hyper_is_regular(const H5S_t *space)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_is_regular() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_spans_shape_same_helper
@@ -5724,7 +5724,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_shape_same() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_release
@@ -5765,7 +5765,7 @@ H5S__hyper_release(H5S_t *space)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__hyper_release() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_coord_to_span
@@ -5828,7 +5828,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_coord_to_span() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__hyper_add_span_element_helper
@@ -6494,7 +6494,7 @@ H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset)
if(0 != offset[u]) {
non_zero_offset = TRUE;
break;
- } /* end if */
+ }
/* Only perform operation if the offset is non-zero */
if(non_zero_offset) {
@@ -7060,7 +7060,7 @@ H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset)
* simultaneous operations */
H5S__hyper_adjust_s_helper(space->select.sel_info.hslab->span_lst, space->extent.rank, offset, 0, op_gen);
} /* end if */
- } /* end if */
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -9020,7 +9020,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__hyper_generate_spans() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__check_spans_overlap
@@ -9404,11 +9404,11 @@ done:
/*-------------------------------------------------------------------------
* Function: H5S__generate_hyperlab
*
- * Purpose: Generate hyperslab information from H5S_select_hyperslab()
+ * Purpose: Generate hyperslab information from H5S_select_hyperslab()
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, September 12, 2000
*
*-------------------------------------------------------------------------
@@ -9824,11 +9824,11 @@ done:
/*-------------------------------------------------------------------------
* Function: H5S_select_hyperslab
*
- * Purpose: Internal version of H5Sselect_hyperslab().
+ * Purpose: Internal version of H5Sselect_hyperslab().
*
- * Return: Non-negative on success/Negative on failure
+ * Return: Non-negative on success/Negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Wednesday, January 10, 2001
*
*-------------------------------------------------------------------------
@@ -10495,9 +10495,9 @@ hid_t
H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[],
const hsize_t stride[], const hsize_t count[], const hsize_t block[])
{
- H5S_t *space; /* Dataspace to modify selection of */
- H5S_t *new_space = NULL; /* New dataspace created */
- hid_t ret_value; /* Return value */
+ H5S_t *space; /* Dataspace to modify selection of */
+ H5S_t *new_space = NULL; /* New dataspace created */
+ hid_t ret_value; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE6("i", "iSs*h*h*h*h", space_id, op, start, stride, count, block);
@@ -10529,11 +10529,11 @@ done:
/*-------------------------------------------------------------------------
* Function: H5S__combine_select
*
- * Purpose: Internal version of H5Scombine_select().
+ * Purpose: Internal version of H5Scombine_select().
*
- * Return: New dataspace on success/NULL on failure
+ * Return: New dataspace on success/NULL on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, October 30, 2001
*
*-------------------------------------------------------------------------
@@ -10668,15 +10668,15 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Scombine_select() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__modify_select
*
- * Purpose: Internal version of H5Smodify_select().
+ * Purpose: Internal version of H5Smodify_select().
*
- * Return: New dataspace on success/NULL on failure
+ * Return: New dataspace on success/NULL on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, October 30, 2001
*
*-------------------------------------------------------------------------
@@ -12174,7 +12174,7 @@ H5S_hyper_get_first_inc_block(const H5S_t *space, hsize_t clip_size,
hbool_t *partial)
{
H5S_hyper_sel_t *hslab; /* Convenience pointer to hyperslab info */
- H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo.opt in unlimited dimension */
+ H5S_hyper_dim_t *diminfo; /* Convenience pointer to diminfo in unlimited dimension */
hsize_t ret_value = 0;
FUNC_ENTER_NOAPI(0)
diff --git a/src/H5Smpio.c b/src/H5Smpio.c
index 33dd492..147fd25 100644
--- a/src/H5Smpio.c
+++ b/src/H5Smpio.c
@@ -14,7 +14,7 @@
/*
* Programmer: rky 980813
*
- * Purpose: Create MPI data types for HDF5 selections.
+ * Purpose: Create MPI data types for HDF5 selections.
*
*/
@@ -148,14 +148,14 @@ H5S__mpio_all_type(const H5S_t *space, size_t elmt_size,
*new_type = MPI_BYTE;
H5_CHECKED_ASSIGN(*count, int, total_bytes, hsize_t);
*is_derived_type = FALSE;
- } /* end if */
+ }
else {
/* Create a LARGE derived datatype for this transfer */
if(H5_mpio_create_large_type(total_bytes, 0, MPI_BYTE, new_type) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large datatype from the all selection")
*count = 1;
*is_derived_type = TRUE;
- } /* end else */
+ }
done:
FUNC_LEAVE_NOAPI(ret_value)
@@ -253,7 +253,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points,
/* Commit MPI datatype for later use */
if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(new_type)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
- } /* end if */
+ }
else {
/* use LARGE_DATATYPE::
* We'll create an hindexed_block type for every 2G point count and then combine
@@ -295,7 +295,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points,
#if MPI_VERSION >= 3
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block((int)bigio_count,
1, &disp[(hsize_t)i*bigio_count], elmt_type, &inner_types[i])))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code)
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code);
#else
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)bigio_count,
blocks, &disp[i*bigio_count], elmt_type, &inner_types[i])))
@@ -309,7 +309,7 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points,
#if MPI_VERSION >= 3
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed_block(remaining_points,
1, &disp[(hsize_t)num_big_types*bigio_count], elmt_type, &inner_types[num_big_types])))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code)
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed_block failed", mpi_code);
#else
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed((int)remaining_points,
blocks, &disp[num_big_types*bigio_count], elmt_type, &inner_types[num_big_types])))
@@ -317,11 +317,12 @@ H5S__mpio_create_point_datatype(size_t elmt_size, hsize_t num_points,
#endif
inner_blocks[num_big_types] = 1;
inner_disps[num_big_types] = 0;
- } /* end if */
+ }
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_struct(total_types,
inner_blocks, inner_disps, inner_types, new_type)))
- HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code)
+ HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_struct", mpi_code);
+
for(i = 0; i < total_types; i++)
MPI_Type_free(&inner_types[i]);
@@ -492,7 +493,7 @@ done:
* selection and so the memory datatype has to be permuted using the
* permutation map created by the file selection.
*
- * Note: This routine is called from H5_mpio_space_type(), which is
+ * Note: This routine is called from H5S_mpio_space_type(), which is
* called first for the file dataspace and creates
*
* Return: Non-negative on success, negative on failure.
@@ -799,7 +800,7 @@ if(H5DEBUG(S)) {
/* Use a single MPI datatype that has a 32 bit size */
if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &inner_type)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
- } /* end if */
+ }
else
/* Create the compound datatype for this operation (> 2GB) */
if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &inner_type) < 0)
@@ -836,7 +837,7 @@ if(H5DEBUG(S))
MPI_Type_free(&inner_type);
if(mpi_code != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code)
- } /* end if */
+ }
else {
/* Things get a bit more complicated and require LARGE_DATATYPE processing
* There are two MPI datatypes that need to be created:
@@ -858,7 +859,7 @@ if(H5DEBUG(S))
if(bigio_count < d[i].block) {
if(H5_mpio_create_large_type(d[i].block, 0, inner_type, &block_type) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large block datatype in hyper selection")
- } /* end if */
+ }
else
if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)d[i].block, inner_type, &block_type)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
@@ -879,7 +880,7 @@ if(H5DEBUG(S))
if(bigio_count < d[i].count) {
if(H5_mpio_create_large_type(d[i].count, stride_in_bytes, block_type, &outer_type) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large outer datatype in hyper selection")
- } /* end if */
+ }
/* otherwise a regular create_hvector will do */
else
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hvector((int)d[i].count, /* count */
@@ -891,7 +892,7 @@ if(H5DEBUG(S))
MPI_Type_free(&block_type);
MPI_Type_free(&inner_type);
- } /* end else */
+ } /* end else */
/****************************************
* Then build the dimension type as (start, vector type, xtent).
@@ -1004,7 +1005,7 @@ H5S__mpio_span_hyper_type(const H5S_t *space, size_t elmt_size,
if(bigio_count >= elmt_size) {
if(MPI_SUCCESS != (mpi_code = MPI_Type_contiguous((int)elmt_size, MPI_BYTE, &elmt_type)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code)
- } /* end if */
+ }
else
if(H5_mpio_create_large_type(elmt_size, 0, MPI_BYTE, &elmt_type) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "couldn't create a large element datatype in span_hyper selection")
@@ -1113,7 +1114,6 @@ H5S__obtain_datatype(H5S_hyper_span_info_t *spans, const hsize_t *down,
{
H5S_hyper_span_t *span; /* Hyperslab span to iterate with */
hsize_t bigio_count; /* Transition point to create derived type */
-
size_t alloc_count = 0; /* Number of span tree nodes allocated at this level */
size_t outercount = 0; /* Number of span tree nodes at this level */
MPI_Datatype *inner_type = NULL;
diff --git a/src/H5Snone.c b/src/H5Snone.c
index 630d1d5..672302d 100644
--- a/src/H5Snone.c
+++ b/src/H5Snone.c
@@ -29,7 +29,7 @@
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
-#include "H5Eprivate.h" /* Error handling */
+#include "H5Eprivate.h" /* Error handling */
#include "H5Iprivate.h" /* ID Functions */
#include "H5Spkg.h" /* Dataspace functions */
#include "H5VMprivate.h" /* Vector functions */
@@ -68,8 +68,7 @@ static htri_t H5S__none_intersect_block(const H5S_t *space, const hsize_t *start
static herr_t H5S__none_adjust_u(H5S_t *space, const hsize_t *offset);
static herr_t H5S__none_adjust_s(H5S_t *space, const hssize_t *offset);
static herr_t H5S__none_project_scalar(const H5S_t *space, hsize_t *offset);
-static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space,
- hsize_t *offset);
+static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset);
static herr_t H5S__none_iter_init(const H5S_t *space, H5S_sel_iter_t *iter);
/* Selection iteration callbacks */
@@ -143,13 +142,13 @@ static const H5S_sel_iter_class_t H5S_sel_iter_none[1] = {{
/*-------------------------------------------------------------------------
- * Function: H5S__none_iter_init
+ * Function: H5S__none_iter_init
*
- * Purpose: Initializes iteration information for "none" selection.
+ * Purpose: Initializes iteration information for "none" selection.
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 16, 1998
*
*-------------------------------------------------------------------------
@@ -171,21 +170,20 @@ H5S__none_iter_init(const H5S_t H5_ATTR_UNUSED *space, H5S_sel_iter_t *iter)
/*-------------------------------------------------------------------------
- * Function: H5S__none_iter_coords
+ * Function: H5S__none_iter_coords
*
- * Purpose: Retrieve the current coordinates of iterator for current
+ * Purpose: Retrieve the current coordinates of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, April 22, 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
-H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter,
- hsize_t H5_ATTR_UNUSED *coords)
+H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *coords)
{
FUNC_ENTER_STATIC_NOERR
@@ -198,21 +196,20 @@ H5S__none_iter_coords(const H5S_sel_iter_t H5_ATTR_UNUSED *iter,
/*-------------------------------------------------------------------------
- * Function: H5S__none_iter_block
+ * Function: H5S__none_iter_block
*
- * Purpose: Retrieve the current block of iterator for current
+ * Purpose: Retrieve the current block of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Monday, June 2, 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
-H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter,
- hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end)
+H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end)
{
FUNC_ENTER_STATIC_NOERR
@@ -226,13 +223,13 @@ H5S__none_iter_block(const H5S_sel_iter_t H5_ATTR_UNUSED *iter,
/*-------------------------------------------------------------------------
- * Function: H5S__none_iter_nelmts
+ * Function: H5S__none_iter_nelmts
*
- * Purpose: Return number of elements left to process in iterator
+ * Purpose: Return number of elements left to process in iterator
*
- * Return: Non-negative number of elements on success, zero on failure
+ * Return: Non-negative number of elements on success, zero on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 16, 1998
*
*-------------------------------------------------------------------------
@@ -472,8 +469,7 @@ H5S__none_release(H5S_t H5_ATTR_UNUSED *space)
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src,
- hbool_t H5_ATTR_UNUSED share_selection)
+H5S__none_copy(H5S_t *dst, const H5S_t H5_ATTR_UNUSED *src, hbool_t H5_ATTR_UNUSED share_selection)
{
FUNC_ENTER_STATIC_NOERR
@@ -586,8 +582,8 @@ H5S__none_serialize(const H5S_t *space, uint8_t **p)
HDassert(pp);
/* Store the preamble information */
- UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
- UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */
+ UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
+ UINT32ENCODE(pp, (uint32_t)H5S_NONE_VERSION_1); /* Store the version number */
UINT32ENCODE(pp, (uint32_t)0); /* Store the un-used padding */
UINT32ENCODE(pp, (uint32_t)0); /* Store the additional information length */
@@ -698,8 +694,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start,
- hsize_t H5_ATTR_UNUSED *end)
+H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *start, hsize_t H5_ATTR_UNUSED *end)
{
FUNC_ENTER_STATIC_NOERR
@@ -708,7 +703,7 @@ H5S__none_bounds(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUSED *star
HDassert(end);
FUNC_LEAVE_NOAPI(FAIL)
-} /* end H5Sget_none_bounds() */
+} /* end H5S_none_bounds() */
/*--------------------------------------------------------------------------
@@ -991,11 +986,11 @@ H5S__none_adjust_s(H5S_t H5_ATTR_UNUSED *space, const hssize_t H5_ATTR_UNUSED *o
/*-------------------------------------------------------------------------
- * Function: H5S__none_project_scalar
+ * Function: H5S__none_project_scalar
*
- * Purpose: Projects a 'none' selection into a scalar dataspace
+ * Purpose: Projects a 'none' selection into a scalar dataspace
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
* Programmer: Quincey Koziol
* Sunday, July 18, 2010
@@ -1016,14 +1011,14 @@ H5S__none_project_scalar(const H5S_t H5_ATTR_UNUSED *space, hsize_t H5_ATTR_UNUS
/*-------------------------------------------------------------------------
- * Function: H5S__none_project_simple
+ * Function: H5S__none_project_simple
*
- * Purpose: Projects an 'none' selection onto/into a simple dataspace
+ * Purpose: Projects an 'none' selection onto/into a simple dataspace
* of a different rank
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Sunday, July 18, 2010
*
*-------------------------------------------------------------------------
diff --git a/src/H5Spkg.h b/src/H5Spkg.h
index da2dd4a..e08fedf 100644
--- a/src/H5Spkg.h
+++ b/src/H5Spkg.h
@@ -324,11 +324,9 @@ struct H5S_t {
/* Selection iteration methods */
/* Method to retrieve the current coordinates of iterator for current selection */
-typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter,
- hsize_t *coords);
+typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, hsize_t *coords);
/* Method to retrieve the current block of iterator for current selection */
-typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter,
- hsize_t *start, hsize_t *end);
+typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end);
/* Method to determine number of elements left in iterator for current selection */
typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter);
/* Method to determine if there are more blocks left in the current selection */
diff --git a/src/H5Spoint.c b/src/H5Spoint.c
index 6948125..be9015f 100644
--- a/src/H5Spoint.c
+++ b/src/H5Spoint.c
@@ -15,7 +15,7 @@
* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
* Tuesday, June 16, 1998
*
- * Purpose: Point selection dataspace I/O functions.
+ * Purpose: Point selection dataspace I/O functions.
*/
/****************/
@@ -30,8 +30,8 @@
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
-#include "H5Eprivate.h" /* Error handling */
-#include "H5FLprivate.h" /* Free Lists */
+#include "H5Eprivate.h" /* Error handling */
+#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* ID Functions */
#include "H5MMprivate.h" /* Memory management */
#include "H5Spkg.h" /* Dataspace functions */
@@ -75,21 +75,17 @@ static htri_t H5S__point_is_contiguous(const H5S_t *space);
static htri_t H5S__point_is_single(const H5S_t *space);
static htri_t H5S__point_is_regular(const H5S_t *space);
static htri_t H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2);
-static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start,
- const hsize_t *end);
+static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end);
static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset);
static herr_t H5S__point_adjust_s(H5S_t *space, const hssize_t *offset);
-static herr_t H5S__point_project_scalar(const H5S_t *spasce, hsize_t *offset);
-static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space,
- hsize_t *offset);
+static herr_t H5S__point_project_scalar(const H5S_t *space, hsize_t *offset);
+static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset);
static herr_t H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter);
-static herr_t H5S__point_get_version_enc_size(const H5S_t *space,
- uint32_t *version, uint8_t *enc_size);
+static herr_t H5S__point_get_version_enc_size(const H5S_t *space, uint32_t *version, uint8_t *enc_size);
/* Selection iteration callbacks */
static herr_t H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords);
-static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start,
- hsize_t *end);
+static herr_t H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end);
static hsize_t H5S__point_iter_nelmts(const H5S_sel_iter_t *iter);
static htri_t H5S__point_iter_has_next_block(const H5S_sel_iter_t *iter);
static herr_t H5S__point_iter_next(H5S_sel_iter_t *sel_iter, size_t nelem);
@@ -169,16 +165,15 @@ H5FL_BARR_DEFINE_STATIC(H5S_pnt_node_t, hcoords_t, H5S_MAX_RANK);
/* Declare a free list to manage the H5S_pnt_list_t struct */
H5FL_DEFINE_STATIC(H5S_pnt_list_t);
-
-
+
/*-------------------------------------------------------------------------
* Function: H5S__point_iter_init
*
- * Purpose: Initializes iteration information for point selection.
+ * Purpose: Initializes iteration information for point selection.
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 16, 1998
*
*-------------------------------------------------------------------------
@@ -223,16 +218,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_iter_init() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__point_iter_coords
*
- * Purpose: Retrieve the current coordinates of iterator for current
+ * Purpose: Retrieve the current coordinates of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, April 22, 2003
*
*-------------------------------------------------------------------------
@@ -252,16 +247,16 @@ H5S__point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_iter_coords() */
-
+
/*-------------------------------------------------------------------------
- * Function: H5S__point_iter_block
+ * Function: H5S_point_iter_block
*
- * Purpose: Retrieve the current block of iterator for current
+ * Purpose: Retrieve the current block of iterator for current
* selection
*
- * Return: Non-negative on success, negative on failure
+ * Return: Non-negative on success, negative on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Monday, June 2, 2003
*
*-------------------------------------------------------------------------
@@ -283,15 +278,15 @@ H5S__point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_iter_block() */
-
+
/*-------------------------------------------------------------------------
* Function: H5S__point_iter_nelmts
*
- * Purpose: Return number of elements left to process in iterator
+ * Purpose: Return number of elements left to process in iterator
*
- * Return: Non-negative number of elements on success, zero on failure
+ * Return: Non-negative number of elements on success, zero on failure
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Tuesday, June 16, 1998
*
*-------------------------------------------------------------------------
@@ -307,7 +302,7 @@ H5S__point_iter_nelmts(const H5S_sel_iter_t *iter)
FUNC_LEAVE_NOAPI(iter->elmt_left)
} /* end H5S__point_iter_nelmts() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_iter_has_next_block
@@ -343,7 +338,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_iter_has_next_block() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_iter_next
@@ -380,7 +375,7 @@ H5S__point_iter_next(H5S_sel_iter_t *iter, size_t nelem)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_iter_next() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_iter_next_block
@@ -412,7 +407,7 @@ H5S__point_iter_next_block(H5S_sel_iter_t *iter)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_iter_next_block() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_iter_get_seq_list
@@ -543,7 +538,7 @@ H5S__point_iter_get_seq_list(H5S_sel_iter_t *iter, size_t maxseq, size_t maxelem
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_iter_get_seq_list() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_iter_release
@@ -577,7 +572,7 @@ H5S__point_iter_release(H5S_sel_iter_t * iter)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_iter_release() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_add
@@ -694,7 +689,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_add() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_release
@@ -732,7 +727,7 @@ H5S__point_release(H5S_t *space)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_release() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S_select_elements
@@ -789,7 +784,7 @@ H5S_select_elements(H5S_t *space, H5S_seloper_t op, size_t num_elem,
/* Set the bound box to the default value */
H5VM_array_fill(space->select.sel_info.pnt_lst->low_bounds, &tmp, sizeof(hsize_t), space->extent.rank);
HDmemset(space->select.sel_info.pnt_lst->high_bounds, 0, sizeof(hsize_t) * space->extent.rank);
- } /* end if */
+ }
/* Add points to selection */
if(H5S__point_add(space, op, num_elem, coord) < 0)
@@ -802,7 +797,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S_select_elements() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__copy_pnt_list
@@ -878,7 +873,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__copy_pnt_list() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__free_pnt_list
@@ -920,7 +915,7 @@ H5S__free_pnt_list(H5S_pnt_list_t *pnt_lst)
FUNC_LEAVE_NOAPI_VOID
} /* end H5S__free_pnt_list() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_copy
@@ -948,7 +943,7 @@ H5S__point_copy(H5S_t *dst, const H5S_t *src, hbool_t H5_ATTR_UNUSED share_selec
FUNC_ENTER_STATIC
- /* Sanity check */
+ /* Sanity checks */
HDassert(src);
HDassert(dst);
@@ -960,7 +955,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_copy() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_is_valid
@@ -1004,7 +999,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_is_valid() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sget_select_elem_npoints
@@ -1050,7 +1045,7 @@ done:
PURPOSE
Determine the version and the size (2, 4 or 8 bytes) to encode point selection info
USAGE
- hssize_t H5S__point_set_enc_size(space, version, enc_size)
+ hssize_t H5S__point_get_version_enc_size(space, version, enc_size)
const H5S_t *space: IN: Dataspace ID of selection to query
uint32_t *version: OUT: The version to use for encoding
uint8_t *enc_size: OUT: The size to use for encoding
@@ -1161,7 +1156,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5S__point_get_version_enc_size() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_serial_size
@@ -1194,7 +1189,7 @@ H5S__point_serial_size(const H5S_t *space)
/* Determine the version and encoded size for point selection */
if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size")
/* Basic number of bytes required to serialize point selection: */
if(version >= H5S_POINT_VERSION_2)
@@ -1220,7 +1215,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_serial_size() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_serialize
@@ -1246,7 +1241,7 @@ static herr_t
H5S__point_serialize(const H5S_t *space, uint8_t **p)
{
H5S_pnt_node_t *curr; /* Point information nodes */
- uint8_t *pp; /* Local pointer for decoding */
+ uint8_t *pp; /* Local pointer for encoding */
uint8_t *lenp = NULL; /* pointer to length location for later storage */
uint32_t len=0; /* number of bytes used */
unsigned u; /* local counting variable */
@@ -1264,7 +1259,7 @@ H5S__point_serialize(const H5S_t *space, uint8_t **p)
/* Determine the version and encoded size for point selection info */
if(H5S__point_get_version_enc_size(space, &version, &enc_size) < 0)
- HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine hyper version")
+ HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't determine version and enc_size")
/* Store the preamble information */
UINT32ENCODE(pp, (uint32_t)H5S_GET_SELECT_TYPE(space)); /* Store the type of selection */
@@ -1352,8 +1347,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5S__point_serialize() */
-
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_deserialize
@@ -1508,7 +1502,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_deserialize() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__get_select_elem_pointlist
@@ -1539,8 +1533,7 @@ done:
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
-H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint,
- hsize_t numpoints, hsize_t *buf)
+H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint, hsize_t numpoints, hsize_t *buf)
{
H5S_pnt_node_t *node; /* Point node */
unsigned rank; /* Dataspace rank */
@@ -1573,7 +1566,7 @@ H5S__get_select_elem_pointlist(const H5S_t *space, hsize_t startpoint,
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__get_select_elem_pointlist() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sget_select_elem_pointlist
@@ -1627,7 +1620,7 @@ done:
FUNC_LEAVE_API(ret_value)
} /* end H5Sget_select_elem_pointlist() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_bounds
@@ -1685,7 +1678,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_bounds() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_offset
@@ -1749,7 +1742,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_offset() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_unlim_dim
@@ -1778,7 +1771,7 @@ H5S__point_unlim_dim(const H5S_t H5_ATTR_UNUSED *space)
FUNC_LEAVE_NOAPI(-1)
} /* end H5S__point_unlim_dim() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_is_contiguous
@@ -1818,7 +1811,7 @@ H5S__point_is_contiguous(const H5S_t *space)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_is_contiguous() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_is_single
@@ -1855,7 +1848,7 @@ H5S__point_is_single(const H5S_t *space)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_is_single() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_is_regular
@@ -1896,7 +1889,7 @@ H5S__point_is_regular(const H5S_t *space)
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_is_regular() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_shape_same
@@ -2004,7 +1997,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_shape_same() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_intersect_block
@@ -2061,7 +2054,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_intersect_block() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_adjust_u
@@ -2098,7 +2091,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset)
if(0 != offset[u]) {
non_zero_offset = TRUE;
break;
- } /* end if */
+ }
/* Only perform operation if the offset is non-zero */
if(non_zero_offset) {
@@ -2129,7 +2122,7 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset)
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5S__point_adjust_u() */
-
+
/*--------------------------------------------------------------------------
NAME
H5S__point_adjust_s
@@ -2199,15 +2192,16 @@ H5S__point_adjust_s(H5S_t *space, const hssize_t *offset)
} /* end H5S__point_adjust_s() */
+
/*-------------------------------------------------------------------------
* Function: H5S__point_project_scalar
*
- * Purpose: Projects a single element point selection into a scalar
+ * Purpose: Projects a single element point selection into a scalar
* dataspace
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Sunday, July 18, 2010
*
*-------------------------------------------------------------------------
@@ -2238,16 +2232,16 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_project_scalar() */
-
+
/*-------------------------------------------------------------------------
- * Function: H5S__point_project_simple
+ * Function: H5S_point_project_simple
*
- * Purpose: Projects a point selection onto/into a simple dataspace
+ * Purpose: Projects a point selection onto/into a simple dataspace
* of a different rank
*
- * Return: Non-negative on success, negative on failure.
+ * Return: Non-negative on success, negative on failure.
*
- * Programmer: Quincey Koziol
+ * Programmer: Quincey Koziol
* Sunday, July 18, 2010
*
*-------------------------------------------------------------------------
@@ -2374,7 +2368,7 @@ done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5S__point_project_simple() */
-
+
/*--------------------------------------------------------------------------
NAME
H5Sselect_elements
diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h
index a61c505..5100f1c 100644
--- a/src/H5Sprivate.h
+++ b/src/H5Sprivate.h
@@ -183,6 +183,7 @@ typedef struct H5S_sel_iter_op_t {
#define H5S_SELECT_ITER_GET_SEQ_LIST(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN) (H5S_select_iter_get_seq_list(ITER,MAXSEQ,MAXBYTES,NSEQ,NBYTES,OFF,LEN))
#define H5S_SELECT_ITER_RELEASE(ITER) (H5S_select_iter_release(ITER))
#endif /* H5S_MODULE */
+
/* Handle these callbacks in a special way, since they have prologs that need to be executed */
#define H5S_SELECT_COPY(DST,SRC,SHARE) (H5S_select_copy(DST,SRC,SHARE))
#define H5S_SELECT_SHAPE_SAME(S1,S2) (H5S_select_shape_same(S1,S2))
diff --git a/src/H5Sselect.c b/src/H5Sselect.c
index 1072d7d..c9d7fc0 100644
--- a/src/H5Sselect.c
+++ b/src/H5Sselect.c
@@ -32,6 +32,7 @@
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
+#include "H5MMprivate.h" /* Memory management */
#include "H5Spkg.h" /* Dataspaces */
#include "H5VMprivate.h" /* Vector and array functions */
@@ -144,8 +145,8 @@ H5S_select_offset(H5S_t *space, const hssize_t *offset)
herr_t
H5Soffset_simple(hid_t space_id, const hssize_t *offset)
{
- H5S_t *space; /* Dataspace to query */
- herr_t ret_value = SUCCEED; /* Return value */
+ H5S_t *space; /* Dataspace to modify */
+ herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*Hs", space_id, offset);
@@ -582,7 +583,7 @@ H5S_select_deserialize(H5S_t **space, const uint8_t **p)
default:
break;
- } /* end switch */
+ }
if(ret_value < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "can't deserialize selection")
@@ -1170,7 +1171,7 @@ H5S_select_iter_init(H5S_sel_iter_t *sel_iter, const H5S_t *space,
if(sel_iter->rank > 0) {
H5MM_memcpy(sel_iter->dims, space->extent.size, sizeof(hsize_t) * space->extent.rank);
H5MM_memcpy(sel_iter->sel_off, space->select.offset, sizeof(hsize_t) * space->extent.rank);
- } /* end if */
+ }
/* Save the element size */
sel_iter->elmt_size = elmt_size;
diff --git a/src/H5Tconv.c b/src/H5Tconv.c
index db76543..c1a8199 100644
--- a/src/H5Tconv.c
+++ b/src/H5Tconv.c
@@ -3110,8 +3110,24 @@ H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts,
if(NULL == (tpath = H5T_path_find(src->shared->parent, dst->shared->parent)))
HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatypes")
else if(!H5T_path_noop(tpath)) {
- if((tsrc_id = H5I_register(H5I_DATATYPE, H5T_copy(src->shared->parent, H5T_COPY_ALL), FALSE)) < 0 ||
- (tdst_id = H5I_register(H5I_DATATYPE, H5T_copy(dst->shared->parent, H5T_COPY_ALL), FALSE)) < 0)
+ H5T_t *tsrc_cpy = NULL, *tdst_cpy = NULL;
+
+ if(NULL == (tsrc_cpy = H5T_copy(src->shared->parent, H5T_COPY_ALL)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy src type for conversion")
+ /* References need to know about the src file */
+ if(tsrc_cpy->shared->type == H5T_REFERENCE)
+ if(H5T_set_loc(tsrc_cpy, src->shared->u.vlen.file, H5T_LOC_MEMORY) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location");
+
+ if(NULL == (tdst_cpy = H5T_copy(dst->shared->parent, H5T_COPY_ALL)))
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, FAIL, "unable to copy dst type for conversion")
+ /* References need to know about the dst file */
+ if(tdst_cpy->shared->type == H5T_REFERENCE)
+ if(H5T_set_loc(tdst_cpy, dst->shared->u.vlen.file, H5T_LOC_MEMORY) < 0)
+ HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't set datatype location");
+
+ if(((tsrc_id = H5I_register(H5I_DATATYPE, tsrc_cpy, FALSE)) < 0)
+ || ((tdst_id = H5I_register(H5I_DATATYPE, tdst_cpy, FALSE)) < 0))
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
} /* end else-if */
else
diff --git a/src/H5Tref.c b/src/H5Tref.c
index b357baa..7c59e75 100644
--- a/src/H5Tref.c
+++ b/src/H5Tref.c
@@ -144,7 +144,9 @@ H5T__ref_set_loc(const H5T_t *dt, H5VL_object_t *file, H5T_loc_t loc)
switch(loc) {
case H5T_LOC_MEMORY: /* Memory based reference datatype */
- HDassert(NULL == file);
+
+ /* NB. We allow for the file to be non-NULL when doing
+ * memory-to-memory conversion */
/* Mark this type as being stored in memory */
dt->shared->u.atomic.u.r.loc = H5T_LOC_MEMORY;
@@ -364,9 +366,8 @@ static size_t
H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf,
size_t H5_ATTR_UNUSED src_size, H5VL_object_t *dst_file, hbool_t *dst_copy)
{
- H5VL_object_t *vol_obj; /* VOL object for src ref's location */
+ H5VL_object_t *vol_obj = NULL; /* VOL object for src ref's location */
const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf;
- hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */
char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */
unsigned flags = 0; /* References flags */
size_t ret_value = 0; /* Return value */
@@ -377,14 +378,18 @@ H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf
HDassert(src_buf);
HDassert(src_size == H5T_REF_MEM_SIZE);
- /* Retrieve VOL object */
- if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id)))
- HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier")
+ if(NULL != dst_file) {
+ hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */
- /* Set external flag if referenced file is not destination file */
- if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0)
- HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal")
- flags |= !files_equal ? H5R_IS_EXTERNAL : 0;
+ /* Retrieve VOL object */
+ if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id)))
+ HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier")
+
+ /* Set external flag if referenced file is not destination file */
+ if(H5VL_file_is_same(vol_obj, dst_file, &files_equal) < 0)
+ HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal")
+ flags |= !files_equal ? H5R_IS_EXTERNAL : 0;
+ }
/* Force re-calculating encoding size if any flags are set */
if(flags || !src_ref->encode_size) {
@@ -458,8 +463,8 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf,
{
H5VL_object_t *vol_obj; /* VOL object for src ref's location */
const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf;
- hbool_t files_equal = FALSE; /* Whether src & dst references are in same file */
- char file_name_buf_static[256]; /* File name */
+ hbool_t files_equal = TRUE; /* Whether src & dst references are in same file */
+ char file_name_buf_static[256] = {'\0'}; /* File name */
char *file_name_buf_dyn = NULL; /* Pointer to dynamically allocated buffer for file name, if static buffer is too small */
ssize_t file_name_len; /* Size of file name buffer */
unsigned flags = 0; /* References flags */
@@ -470,10 +475,15 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf,
/* Sanity check */
HDassert(src_buf);
HDassert(src_size == H5T_REF_MEM_SIZE);
- HDassert(dst_file);
HDassert(dst_buf);
HDassert(dst_size);
+ /* Memory-to-memory conversion to support vlen conversion */
+ if(NULL == dst_file) {
+ HDmemcpy(dst_buf, src_buf, dst_size);
+ HGOTO_DONE(ret_value);
+ }
+
/* Retrieve VOL object */
if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier")
@@ -504,14 +514,16 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf,
H5CX_set_libver_bounds(NULL);
} /* end if */
- /* Get file name */
- if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0)
- HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name")
- if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) {
- if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1)))
- HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name")
- if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0)
+ /* Get file name (if external reference) */
+ if(flags) {
+ if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0)
HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name")
+ if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) {
+ if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1)))
+ HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name")
+ if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0)
+ HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name")
+ } /* end if */
} /* end if */
/* Encode reference */
@@ -539,7 +551,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size
H5R_type_t src_type, H5VL_object_t H5_ATTR_UNUSED *dst_file, void *dst_buf,
size_t dst_size, void H5_ATTR_UNUSED *bg_buf)
{
- H5F_t *src_f;
+ H5F_t *src_f = NULL;
hid_t file_id = H5I_INVALID_HID;
H5R_ref_priv_t *dst_ref = (H5R_ref_priv_t *)dst_buf;
herr_t ret_value = SUCCEED;
@@ -547,14 +559,19 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size
FUNC_ENTER_STATIC
/* Sanity check */
- HDassert(src_file);
HDassert(src_buf);
HDassert(src_size);
HDassert(dst_buf);
HDassert(dst_size == H5T_REF_MEM_SIZE);
+ /* Memory-to-memory conversion to support vlen conversion */
+ if(NULL == src_file) {
+ HDmemcpy(dst_buf, src_buf, src_size);
+ HGOTO_DONE(ret_value);
+ }
+
#ifndef NDEBUG
- {
+ if((src_type == H5R_OBJECT1) || (src_type == H5R_DATASET_REGION1)) {
hbool_t is_native = FALSE; /* Whether the src file is using the native VOL connector */
/* Check if using native VOL connector */
diff --git a/src/H5Zfletcher32.c b/src/H5Zfletcher32.c
index 4d75d14..c40e9b4 100644
--- a/src/H5Zfletcher32.c
+++ b/src/H5Zfletcher32.c
@@ -12,7 +12,7 @@
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
- * Programmer: Raymond Lu <slu@ncsa.uiuc.edu>
+ * Programmer: Raymond Lu
* Jan 3, 2003
*/
diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c
index dfc984a..1c8d415 100644
--- a/src/H5Ztrans.c
+++ b/src/H5Ztrans.c
@@ -400,8 +400,6 @@ static void H5Z_print(H5Z_node *tree, FILE *stream);
* Return: Always succeeds.
* Programmer: Bill Wendling
* 26. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -565,8 +563,6 @@ done:
* Return: Nothing
* Programmer: Bill Wendling
* 25. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -634,8 +630,6 @@ done:
* NULLure: NULL
* Programmer: Bill Wendling
* 26. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -728,8 +722,6 @@ done:
* NULLure: NULL
* Programmer: Bill Wendling
* 26. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -828,8 +820,6 @@ done:
* NULLure: NULL
* Programmer: Bill Wendling
* 26. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -972,8 +962,6 @@ done:
* NULLure: NULL
* Programmer: Bill Wendling
* 26. August 2003
- * Modifications:
- * Leon Arber: Added FUNC_ENTER / FUNC_LEAVE pairs
*
*-------------------------------------------------------------------------
*/
@@ -1002,7 +990,6 @@ done:
* Return: SUCCEED if transform applied successfully, FAIL otherwise
* Programmer: Leon Arber
* 5/1/04
- * Modifications:
*
*-------------------------------------------------------------------------
*/
@@ -1115,8 +1102,6 @@ done:
* Return: Nothing
* Programmer: Leon Arber
* 5/1/04
- * Modifications:
- *
*
* Notes: In the case of a polynomial data transform (ie, the left and right subtree
* are both of type H5Z_XFORM_SYMBOL), the convention is that the left hand side
@@ -1213,8 +1198,6 @@ done:
* Function: H5Z_find_type
* Return: Native type of datatype that is passed in
* Programmer: Leon Arber, 4/20/04
- * Modifications:
- *
*
*-------------------------------------------------------------------------
*/
@@ -1301,7 +1284,6 @@ done:
* of the one passed in.
* Programmer: Leon Arber
* April 1, 2004.
- * Modifications:
*
*-------------------------------------------------------------------------
*/
@@ -1375,7 +1357,6 @@ done:
* Return: TRUE or FALSE
* Programmer: Raymond Lu
* 15 March 2012
- * Modifications:
*
*-------------------------------------------------------------------------
*/
@@ -1404,7 +1385,6 @@ H5Z_op_is_numbs(H5Z_node* _tree)
* Return: TRUE or FALSE
* Programmer: Raymond Lu
* 15 March 2012
- * Modifications:
*
*-------------------------------------------------------------------------
*/
@@ -1490,11 +1470,6 @@ H5Z_xform_reduce_tree(H5Z_node* tree)
* Return: None.
* Programmer: Leon Arber
* April 1, 2004.
- * Modifications:
- * Raymond Lu
- * 15 March 2012
- * I added a new macro H5Z_XFORM_DO_OP6 to handle the special
- * operations like -x or +x when the left operand is empty.
*
*-------------------------------------------------------------------------
*/
@@ -1525,14 +1500,10 @@ H5Z_do_op(H5Z_node* tree)
* Success: SUCCEED
* Failure: FAIL
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: May 4, 2004
*
- * Comments:
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
H5Z_data_xform_t *
@@ -1616,14 +1587,10 @@ done:
* Success: SUCCEED
* Failure: FAIL
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: May 4, 2004
*
- * Comments:
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
herr_t
@@ -1662,7 +1629,7 @@ H5Z_xform_destroy(H5Z_data_xform_t *data_xform_prop)
* Success: SUCCEED
* Failure: FAIL
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: May 4, 2004
*
@@ -1742,14 +1709,12 @@ done:
*
* Return: TRUE for no data transform, FALSE for a data transform
*
- * Programmer: Quincey Koziol, koziol@ncsa.uiuc.edu
+ * Programmer: Quincey Koziol
*
* Date: May 4, 2004
*
* Comments: Can't fail
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
hbool_t
@@ -1773,12 +1738,10 @@ H5Z_xform_noop(const H5Z_data_xform_t *data_xform_prop)
* Return:
* Pointer to a copy of the string in the data_xform property.
*
- * Programmer: Leon Arber, larber@ncsa.uiuc.edu
+ * Programmer: Leon Arber
*
* Date: Sept. 4, 2004
*
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
const char *
diff --git a/src/H5dbg.c b/src/H5dbg.c
index 4878884..c5dd55e 100644
--- a/src/H5dbg.c
+++ b/src/H5dbg.c
@@ -15,7 +15,7 @@
*
* Created: H5dbg.c
* Mar 4 2006
- * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Quincey Koziol
*
* Purpose: Generic debugging routines
*
@@ -70,7 +70,6 @@
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
- * koziol@ncsa.uiuc.edu
* Mar 4 2006
*
*-------------------------------------------------------------------------
diff --git a/src/H5timer.c b/src/H5timer.c
index 8f3d305..cef7bf9 100644
--- a/src/H5timer.c
+++ b/src/H5timer.c
@@ -220,7 +220,8 @@ H5_now_usec(void)
*
* Purpose: Get the current time, as the time of seconds after the UNIX epoch
*
- * Return: SUCCEED/FAIL
+ * Return: Success: A non-negative time value
+ * Failure: -1.0 (in theory, can't currently fail)
*
* Programmer: Quincey Koziol
* October 05, 2016
@@ -247,9 +248,9 @@ H5_get_time(void)
HDgettimeofday(&now_tv, NULL);
ret_value = (double)now_tv.tv_sec + ((double)now_tv.tv_usec / (double)1000000.0f);
}
-#else /* H5_HAVE_GETTIMEOFDAY */
+#else
ret_value = (double)HDtime(NULL);
-#endif /* H5_HAVE_GETTIMEOFDAY */
+#endif
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5_get_time() */
@@ -279,9 +280,9 @@ H5__timer_get_timevals(H5_timevals_t *times /*in,out*/)
/* Windows call handles both system/user and elapsed times */
#ifdef H5_HAVE_WIN32_API
if(H5_get_win32_times(times) < 0) {
- times->elapsed = -1;
- times->system = -1;
- times->user = -1;
+ times->elapsed = -1.0;
+ times->system = -1.0;
+ times->user = -1.0;
return -1;
} /* end if */
@@ -310,24 +311,8 @@ H5__timer_get_timevals(H5_timevals_t *times /*in,out*/)
* Elapsed time *
****************/
- /* NOTE: Not having a way to get elapsed time IS an error, unlike
- * the system and user times.
- */
+ times->elapsed = H5_get_time();
-#if defined(H5_HAVE_CLOCK_GETTIME)
-{
- struct timespec ts;
-
- if(HDclock_gettime(CLOCK_MONOTONIC, &ts) != 0)
- return -1;
- times->elapsed = (double)ts.tv_sec + ((double)ts.tv_nsec / (double)1.0E9F);
-}
-#else
- /* Die here. We'd like to know about this so we can support some
- * other time functionality.
- */
- HDassert(0);
-#endif
#endif /* H5_HAVE_WIN32_API */
return 0;
diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt
index 009a071..311d753 100644
--- a/test/CMakeLists.txt
+++ b/test/CMakeLists.txt
@@ -222,6 +222,7 @@ set (ttsafe_SOURCES
${HDF5_TEST_SOURCE_DIR}/ttsafe_error.c
${HDF5_TEST_SOURCE_DIR}/ttsafe_cancel.c
${HDF5_TEST_SOURCE_DIR}/ttsafe_acreate.c
+ ${HDF5_TEST_SOURCE_DIR}/ttsafe_attr_vlen.c
)
set (H5_TESTS
diff --git a/test/Makefile.am b/test/Makefile.am
index e6ce954..7ebeae7 100644
--- a/test/Makefile.am
+++ b/test/Makefile.am
@@ -146,7 +146,7 @@ LDADD=libh5test.la $(LIBHDF5)
# List the source files for tests that have more than one
ttsafe_SOURCES=ttsafe.c ttsafe_dcreate.c ttsafe_error.c ttsafe_cancel.c \
- ttsafe_acreate.c
+ ttsafe_acreate.c ttsafe_attr_vlen.c
cache_image_SOURCES=cache_image.c genall5.c
mirror_vfd_SOURCES=mirror_vfd.c genall5.c
diff --git a/test/trefer.c b/test/trefer.c
index 12651c7..fd97239 100644
--- a/test/trefer.c
+++ b/test/trefer.c
@@ -23,6 +23,7 @@
#define FILE_REF_PARAM "trefer_param.h5"
#define FILE_REF_OBJ "trefer_obj.h5"
+#define FILE_REF_VL_OBJ "trefer_vl_obj.h5"
#define FILE_REF_REG "trefer_reg.h5"
#define FILE_REF_REG_1D "trefer_reg_1d.h5"
#define FILE_REF_OBJ_DEL "trefer_obj_del.h5"
@@ -538,6 +539,273 @@ test_reference_obj(void)
/****************************************************************
**
+** test_reference_vlen_obj(): Test basic H5R (reference) object reference
+** within a vlen type.
+** Tests references to various kinds of objects
+**
+****************************************************************/
+static void
+test_reference_vlen_obj(void)
+{
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dataset, /* Dataset ID */
+ dset2; /* Dereferenced dataset ID */
+ hid_t group; /* Group ID */
+ hid_t sid1; /* Dataspace ID */
+ hid_t tid1; /* Datatype ID */
+ hsize_t dims1[] = {SPACE1_DIM1};
+ hsize_t vl_dims[] = {1};
+ hid_t dapl_id; /* Dataset access property list */
+ H5R_ref_t *wbuf, /* buffer to write to disk */
+ *rbuf; /* buffer read from disk */
+ unsigned *ibuf, *obuf;
+ unsigned i, j; /* Counters */
+ H5O_type_t obj_type; /* Object type */
+ herr_t ret; /* Generic return value */
+ hvl_t vl_wbuf = {0, NULL}, vl_rbuf = {0, NULL};
+
+ /* Output message about test being performed */
+ MESSAGE(5, ("Testing Object Reference Functions within VLEN type\n"));
+
+ /* Allocate write & read buffers */
+ wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
+ rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
+ ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1);
+ obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1);
+
+ for (i = 0; i < SPACE1_DIM1; i++)
+ obuf[i] = i * 3;
+
+ /* Create file */
+ fid1 = H5Fcreate(FILE_REF_VL_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(fid1, H5I_INVALID_HID, "H5Fcreate");
+
+ /* Create dataspace for datasets */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+ CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple");
+
+ /* Create dataset access property list */
+ dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
+ CHECK(dapl_id, H5I_INVALID_HID, "H5Pcreate");
+
+ /* Create a group */
+ group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(group, H5I_INVALID_HID, "H5Gcreate2");
+
+ /* Create a dataset (inside Group1) */
+ dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2");
+
+ /* Write selection to disk */
+ ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf);
+ CHECK(ret, FAIL, "H5Dwrite");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Create another dataset (inside Group1) */
+ dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, FAIL, "H5Dcreate2");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close disk dataspace */
+ ret = H5Sclose(sid1);
+ CHECK(ret, FAIL, "H5Sclose");
+
+ /* Create a datatype to refer to */
+ tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
+ CHECK(tid1, H5I_INVALID_HID, "H5Tcreate");
+
+ /* Insert fields */
+ ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ /* Save datatype for later */
+ ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(ret, FAIL, "H5Tcommit2");
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close group */
+ ret = H5Gclose(group);
+ CHECK(ret, FAIL, "H5Gclose");
+
+ /* Create vlen type */
+ tid1 = H5Tvlen_create(H5T_STD_REF);
+ CHECK(tid1, H5I_INVALID_HID, "H5Tvlen_create");
+
+ /* Create dataspace for datasets */
+ sid1 = H5Screate_simple(SPACE1_RANK, vl_dims, NULL);
+ CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple");
+
+ /* Create a dataset */
+ dataset = H5Dcreate2(fid1, "Dataset3", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2");
+
+ /* Create reference to dataset */
+ ret = H5Rcreate_object(fid1, "/Group1/Dataset1", H5P_DEFAULT, &wbuf[0]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3");
+
+ /* Create reference to dataset */
+ ret = H5Rcreate_object(fid1, "/Group1/Dataset2", H5P_DEFAULT, &wbuf[1]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3");
+
+ /* Create reference to group */
+ ret = H5Rcreate_object(fid1, "/Group1", H5P_DEFAULT, &wbuf[2]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3");
+
+ /* Create reference to named datatype */
+ ret = H5Rcreate_object(fid1, "/Group1/Datatype1", H5P_DEFAULT, &wbuf[3]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[3], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3");
+
+ /* Store references into vlen */
+ vl_wbuf.len = SPACE1_DIM1;
+ vl_wbuf.p = wbuf;
+
+ /* Write selection to disk */
+ ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &vl_wbuf);
+ CHECK(ret, FAIL, "H5Dwrite");
+
+ /* Close disk dataspace */
+ ret = H5Sclose(sid1);
+ CHECK(ret, FAIL, "H5Sclose");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+ CHECK(ret, FAIL, "H5Fclose");
+
+ /* Re-open the file */
+ fid1 = H5Fopen(FILE_REF_VL_OBJ, H5F_ACC_RDWR, H5P_DEFAULT);
+ CHECK(fid1, H5I_INVALID_HID, "H5Fopen");
+
+ /* Open the dataset */
+ dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dopen2");
+
+ tid1 = H5Dget_type(dataset);
+ CHECK(tid1, H5I_INVALID_HID, "H5Dget_type");
+
+ /* Read selection from disk */
+ ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &vl_rbuf);
+ CHECK(ret, FAIL, "H5Dread");
+
+ VERIFY(vl_rbuf.len, SPACE1_DIM1, "H5Dread");
+ rbuf = vl_rbuf.p;
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Open dataset object */
+ dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id);
+ CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Check information in referenced dataset */
+ sid1 = H5Dget_space(dset2);
+ CHECK(sid1, H5I_INVALID_HID, "H5Dget_space");
+
+ ret = (int)H5Sget_simple_extent_npoints(sid1);
+ VERIFY(ret, SPACE1_DIM1, "H5Sget_simple_extent_npoints");
+
+ /* Read from disk */
+ ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf);
+ CHECK(ret, FAIL, "H5Dread");
+
+ for(i = 0; i < SPACE1_DIM1; i++)
+ VERIFY(ibuf[i], i * 3, "Data");
+
+ /* Close dereferenced Dataset */
+ ret = H5Dclose(dset2);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Open group object. GAPL isn't supported yet. But it's harmless to pass in */
+ group = H5Ropen_object(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(group, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Close group */
+ ret = H5Gclose(group);
+ CHECK(ret, FAIL, "H5Gclose");
+
+ /* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */
+ tid1 = H5Ropen_object(&rbuf[3], H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(tid1, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Verify correct datatype */
+ {
+ H5T_class_t tclass;
+
+ tclass = H5Tget_class(tid1);
+ VERIFY(tclass, H5T_COMPOUND, "H5Tget_class");
+
+ ret= H5Tget_nmembers(tid1);
+ VERIFY(ret, 3, "H5Tget_nmembers");
+ }
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close dataset access property list */
+ ret = H5Pclose(dapl_id);
+ CHECK(ret, FAIL, "H5Pclose");
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+ CHECK(ret, FAIL, "H5Fclose");
+
+ /* Destroy references */
+ for(j = 0; j < SPACE1_DIM1; j++) {
+ ret = H5Rdestroy(&wbuf[j]);
+ CHECK(ret, FAIL, "H5Rdestroy");
+ ret = H5Rdestroy(&rbuf[j]);
+ CHECK(ret, FAIL, "H5Rdestroy");
+ }
+
+ /* Free memory buffers */
+ HDfree(wbuf);
+ HDfree(rbuf);
+ HDfree(ibuf);
+ HDfree(obuf);
+} /* test_reference_vlen_obj() */
+
+/****************************************************************
+**
** test_reference_region(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
@@ -2862,6 +3130,7 @@ test_reference(void)
test_reference_params(); /* Test for correct parameter checking */
test_reference_obj(); /* Test basic H5R object reference code */
+ test_reference_vlen_obj(); /* Test reference within vlen */
/* Loop through all the combinations of low/high version bounds */
for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) {
@@ -2907,6 +3176,7 @@ cleanup_reference(void)
{
HDremove(FILE_REF_PARAM);
HDremove(FILE_REF_OBJ);
+ HDremove(FILE_REF_VL_OBJ);
HDremove(FILE_REF_REG);
HDremove(FILE_REF_REG_1D);
HDremove(FILE_REF_OBJ_DEL);
diff --git a/test/tselect.c b/test/tselect.c
index aa0ab11..c98db5d 100644
--- a/test/tselect.c
+++ b/test/tselect.c
@@ -15442,14 +15442,14 @@ test_hyper_io_1d(void)
/* Get the dataset's dataspace */
sid = H5Dget_space(did);
- CHECK(sid, H5I_INVALID_HID, "H5Pcreate");
+ CHECK(sid, H5I_INVALID_HID, "H5Dget_space");
ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, offset, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Set up contiguous memory dataspace for the selected elements */
dimsm[0] = count[0];
mid = H5Screate_simple(RANK, dimsm, NULL);
- CHECK(mid, H5I_INVALID_HID, "H5Screate");
+ CHECK(mid, H5I_INVALID_HID, "H5Screate_simple");
/* Read all the selected 10th elements in the dataset into "rdata" */
ret = H5Dread(did, H5T_NATIVE_INT, mid, sid, H5P_DEFAULT, rdata);
@@ -15476,6 +15476,77 @@ test_hyper_io_1d(void)
/****************************************************************
**
+** test_h5s_set_extent_none:
+** Test to verify the behavior of dataspace code when passed
+** a dataspace modified by H5Sset_extent_none().
+**
+****************************************************************/
+static void
+test_h5s_set_extent_none(void)
+{
+ hid_t sid = H5I_INVALID_HID;
+ hid_t dst_sid = H5I_INVALID_HID;
+ hid_t null_sid = H5I_INVALID_HID;
+ int rank = 1;
+ hsize_t current_dims = 123;
+ H5S_class_t cls;
+ int out_rank;
+ hsize_t out_dims;
+ hsize_t out_maxdims;
+ hssize_t out_points;
+ htri_t equal;
+ herr_t ret;
+
+ /* Specific values here don't matter as we're just going to reset */
+ sid = H5Screate_simple(rank, &current_dims, NULL);
+ CHECK(sid, H5I_INVALID_HID, "H5Screate_simple");
+
+ /* Dataspace class will be H5S_NULL after this.
+ * In versions prior to 1.10.7 / 1.12.1 this would produce a
+ * dataspace with the internal H5S_NO_CLASS class.
+ */
+ ret = H5Sset_extent_none(sid);
+ CHECK(ret, FAIL, "H5Sset_extent_none");
+ cls = H5Sget_simple_extent_type(sid);
+ VERIFY(cls, H5S_NULL, "H5Sget_simple_extent_type");
+
+ /* Extent getters should generate normal results and not segfault.
+ */
+ out_rank = H5Sget_simple_extent_dims(sid, &out_dims, &out_maxdims);
+ VERIFY(out_rank, 0, "H5Sget_simple_extent_dims");
+ out_rank = H5Sget_simple_extent_ndims(sid);
+ VERIFY(out_rank, 0, "H5Sget_simple_extent_ndims");
+ out_points = H5Sget_simple_extent_npoints(sid);
+ VERIFY(out_points, 0, "H5Sget_simple_extent_npoints");
+
+ /* Check that copying the new (non-)extent works.
+ */
+ dst_sid = H5Screate_simple(rank, &current_dims, NULL);
+ CHECK(dst_sid, H5I_INVALID_HID, "H5Screate_simple");
+ ret = H5Sextent_copy(dst_sid, sid);
+ CHECK(ret, FAIL, "H5Sextent_copy");
+
+ /* Check that H5Sset_extent_none() produces the same extent as
+ * H5Screate(H5S_NULL).
+ */
+ null_sid = H5Screate(H5S_NULL);
+ CHECK(null_sid, H5I_INVALID_HID, "H5Screate");
+ equal = H5Sextent_equal(sid, null_sid);
+ VERIFY(equal, TRUE, "H5Sextent_equal");
+
+ /* Close */
+ ret = H5Sclose(sid);
+ CHECK(ret, FAIL, "H5Sclose");
+ ret = H5Sclose(dst_sid);
+ CHECK(ret, FAIL, "H5Sclose");
+ ret = H5Sclose(null_sid);
+ CHECK(ret, FAIL, "H5Sclose");
+
+} /* test_h5s_set_extent_none() */
+
+
+/****************************************************************
+**
** test_select(): Main H5S selection testing routine.
**
****************************************************************/
@@ -15660,6 +15731,11 @@ test_select(void)
/* Test reading of 1-d disjoint file space to 1-d single block memory space */
test_hyper_io_1d();
+ /* Test H5Sset_extent_none() functionality after we updated it to set
+ * the class to H5S_NULL instead of H5S_NO_CLASS.
+ */
+ test_h5s_set_extent_none();
+
} /* test_select() */
diff --git a/test/ttsafe.c b/test/ttsafe.c
index e6edd9a..2de460b 100644
--- a/test/ttsafe.c
+++ b/test/ttsafe.c
@@ -111,6 +111,7 @@ int main(int argc, char *argv[])
AddTest("cancel", tts_cancel, cleanup_cancel, "thread cancellation safety test", NULL);
#endif /* H5_HAVE_PTHREAD_H */
AddTest("acreate", tts_acreate, cleanup_acreate, "multi-attribute creation", NULL);
+ AddTest("attr_vlen", tts_attr_vlen, cleanup_attr_vlen, "multi-file-attribute-vlen read", NULL);
#else /* H5_HAVE_THREADSAFE */
diff --git a/test/ttsafe.h b/test/ttsafe.h
index c29fadc..f1cbe4d 100644
--- a/test/ttsafe.h
+++ b/test/ttsafe.h
@@ -35,12 +35,14 @@ void tts_dcreate(void);
void tts_error(void);
void tts_cancel(void);
void tts_acreate(void);
+void tts_attr_vlen(void);
/* Prototypes for the cleanup routines */
void cleanup_dcreate(void);
void cleanup_error(void);
void cleanup_cancel(void);
void cleanup_acreate(void);
+void cleanup_attr_vlen(void);
#endif /* H5_HAVE_THREADSAFE */
#endif /* TTSAFE_H */
diff --git a/test/ttsafe_attr_vlen.c b/test/ttsafe_attr_vlen.c
new file mode 100644
index 0000000..b07e362
--- /dev/null
+++ b/test/ttsafe_attr_vlen.c
@@ -0,0 +1,176 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/********************************************************************
+ *
+ * Testing for thread safety in H5A library operations.
+ * ------------------------------------------------------------------
+ *
+ * Purpose: Verify that the segmentation fault described in HDFFV-11080
+ * is fixed.
+ *
+ * This test simulates what the user did to trigger the error:
+ * --Create an HDF5 file
+ * --Create an attribute with variable length string datatype
+ * --Attach the attribute to a group
+ * --Write data to the attribute
+ * --Close the file
+ * --Create NUM_THREADS threads
+ * --For each thread:
+ * --Open the test file
+ * --Open and read the attribute for each opened file
+ *
+ * The cause of the problem in this jira issue is due to the file pointer
+ * that is set in the variable length string datatype for the attribute.
+ * That file pointer is already closed and therefore needs to be set to
+ * the current opened file pointer when the attribute is accessed.
+ * Similar patch up was done before when reading dataset in H5D__read()
+ * in src/H5Aint.c.
+ * Hopefully this kind of patch can go away when we resolve the
+ * shared file pointer issue.
+ *
+ ********************************************************************/
+
+#include "ttsafe.h"
+
+#ifdef H5_HAVE_THREADSAFE
+
+#define FILENAME "ttsafe_attr_vlen.h5"
+#define ATTR_NAME "root_attr"
+#define NUM_THREADS 32
+
+void *tts_attr_vlen_thread(void *);
+
+void
+tts_attr_vlen(void)
+{
+ pthread_t threads[NUM_THREADS] = {0}; /* Thread declaration */
+ hid_t fid = H5I_INVALID_HID; /* File ID */
+ hid_t gid = H5I_INVALID_HID; /* Group ID */
+ hid_t atid = H5I_INVALID_HID; /* Datatype ID for attribute */
+ hid_t asid = H5I_INVALID_HID; /* Dataspace ID for attribute */
+ hid_t aid = H5I_INVALID_HID; /* The attribute ID */
+ char *string_attr = "2.0"; /* The attribute data */
+ int ret; /* Return value */
+ int i; /* Local index variable */
+
+ /* Create the HDF5 test file */
+ fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(fid, H5I_INVALID_HID, "H5Fcreate");
+
+ /* Create variable length string type for attribute */
+ atid = H5Tcopy(H5T_C_S1);
+ CHECK(atid, H5I_INVALID_HID, "H5Tcopy");
+ H5Tset_size(atid, H5T_VARIABLE);
+
+ /* Create dataspace for attribute */
+ asid = H5Screate(H5S_SCALAR);
+ CHECK(asid, H5I_INVALID_HID, "H5Screate");
+
+ /* Open the root group */
+ gid = H5Gopen2(fid, "/", H5P_DEFAULT);
+ CHECK(gid, H5I_INVALID_HID, "H5Gopen2");
+
+ /* Attach the attribute to the root group */
+ aid = H5Acreate2(gid, ATTR_NAME, atid, asid, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(aid, H5I_INVALID_HID, "H5Acreate2");
+
+ /* Write data to the attribute */
+ ret = H5Awrite(aid, atid, &string_attr);
+ CHECK(ret, H5I_INVALID_HID, "H5Awrite");
+
+ /* Close IDs */
+ ret = H5Sclose(asid);
+ CHECK(ret, H5I_INVALID_HID, "H5Sclose");
+
+ ret = H5Aclose(aid);
+ CHECK(ret, H5I_INVALID_HID, "H5Aclose");
+
+ ret = H5Gclose(gid);
+ CHECK(ret, H5I_INVALID_HID, "H5Gclose");
+
+ ret = H5Fclose(fid);
+ CHECK(ret, H5I_INVALID_HID, "H5Fclose");
+
+ ret = H5Tclose(atid);
+ CHECK(ret, H5I_INVALID_HID, "H5Tclose");
+
+ /* Start multiple threads and execute tts_attr_vlen_thread() for each thread */
+ for(i = 0; i < NUM_THREADS; i++)
+ pthread_create(&threads[i], NULL, tts_attr_vlen_thread, NULL);
+
+ /* Wait for the threads to end */
+ for(i = 0; i < NUM_THREADS; i++)
+ pthread_join(threads[i], NULL);
+
+} /* end tts_attr_vlen() */
+
+/* Start execution for each thread */
+void *
+tts_attr_vlen_thread(void *client_data)
+{
+ hid_t fid = H5I_INVALID_HID; /* File ID */
+ hid_t gid = H5I_INVALID_HID; /* Group ID */
+ hid_t aid = H5I_INVALID_HID; /* Attribute ID */
+ hid_t atid = H5I_INVALID_HID; /* Datatype ID for the attribute */
+ char *string_attr_check; /* The attribute data being read */
+ char *string_attr = "2.0"; /* The expected attribute data */
+ herr_t ret; /* Return value */
+
+ /* Open the test file */
+ fid = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+ CHECK(fid, H5I_INVALID_HID, "H5Fopen");
+
+ /* Open the group */
+ gid = H5Gopen2(fid, "/", H5P_DEFAULT);
+ CHECK(gid, H5I_INVALID_HID, "H5Gopen");
+
+ /* Open the attribte */
+ aid = H5Aopen(gid, "root_attr", H5P_DEFAULT);
+ CHECK(aid, H5I_INVALID_HID, "H5Aopen");
+
+ /* Get the attribute datatype */
+ atid = H5Aget_type(aid);
+ CHECK(atid, H5I_INVALID_HID, "H5Aget_type");
+
+ /* Read the attribute */
+ ret = H5Aread(aid, atid, &string_attr_check);
+ CHECK(ret, FAIL, "H5Aclose");
+
+ /* Verify the attribute data is as expected */
+ VERIFY_STR(string_attr_check, string_attr, "H5Aread");
+
+ /* Close IDs */
+ ret = H5Aclose(aid);
+ CHECK(ret, FAIL, "H5Aclose");
+
+ ret = H5Gclose(gid);
+ CHECK(ret, FAIL, "H5Aclose");
+
+ ret = H5Fclose(fid);
+ CHECK(ret, FAIL, "H5Aclose");
+
+ ret = H5Tclose(atid);
+ CHECK(ret, FAIL, "H5Aclose");
+
+ return NULL;
+} /* end tts_attr_vlen_thread() */
+
+void
+cleanup_attr_vlen(void)
+{
+ HDunlink(FILENAME);
+}
+
+#endif /*H5_HAVE_THREADSAFE*/
+
diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c
index 8b6ace9..87a3b11 100644
--- a/tools/lib/h5diff.c
+++ b/tools/lib/h5diff.c
@@ -29,7 +29,7 @@
H5_ATTR_PURE int
print_objname (diff_opt_t * opts, hsize_t nfound)
{
- return ((opts->m_verbose || nfound) && !opts->m_quiet) ? 1 : 0;
+ return ((opts->mode_verbose || nfound) && !opts->mode_quiet) ? 1 : 0;
}
/*-------------------------------------------------------------------------
@@ -45,7 +45,7 @@ do_print_objname (const char *OBJ, const char *path1, const char *path2, diff_op
* displaying any object or symbolic links. This improves
* readability of the output.
*/
- if (opts->m_verbose_level >= 1)
+ if (opts->mode_verbose_level >= 1)
parallel_print("\n");
parallel_print("%-7s: <%s> and <%s>\n", OBJ, path1, path2);
}
@@ -74,7 +74,7 @@ do_print_attrname (const char *attr, const char *path1, const char *path2)
static int
print_warn(diff_opt_t *opts)
{
- return ((opts->m_verbose)) ? 1: 0;
+ return ((opts->mode_verbose)) ? 1: 0;
}
@@ -141,7 +141,7 @@ is_valid_options(diff_opt_t *opts)
/*-----------------------------------------------
* no -q(quiet) with -v (verbose) or -r (report) */
- if(opts->m_quiet && (opts->m_verbose || opts->m_report)) {
+ if(opts->mode_quiet && (opts->mode_verbose || opts->mode_report)) {
parallel_print("Error: -q (quiet mode) cannot be added to verbose or report modes\n");
opts->err_stat = H5DIFF_ERR;
H5TOOLS_GOTO_DONE(0);
@@ -169,9 +169,9 @@ done:
* 0 - not excluded path
*------------------------------------------------------------------------*/
static int
-is_exclude_path (char * path, h5trav_type_t type, diff_opt_t *opts)
+is_exclude_path (char *path, h5trav_type_t type, diff_opt_t *opts)
{
- struct exclude_path_list * exclude_path_ptr;
+ struct exclude_path_list *exclude_path_ptr;
int ret_cmp;
int ret_value = 0;
@@ -210,7 +210,7 @@ is_exclude_path (char * path, h5trav_type_t type, diff_opt_t *opts)
if (ret_cmp == 0) { /* found matching object */
/* excluded non-group object */
ret_value = 1;
- /* remember the type of this maching object.
+ /* remember the type of this matching object.
* if it's group, it can be used for excluding its member
* objects in this while() loop */
exclude_path_ptr->obj_type = type;
@@ -224,6 +224,71 @@ done:
return ret_value;
}
+/*-------------------------------------------------------------------------
+ * Function: is_exclude_attr
+ *
+ * Purpose: check if 'paths' are part of exclude path list
+ *
+ * Return:
+ * 1 - excluded path
+ * 0 - not excluded path
+ *------------------------------------------------------------------------*/
+static int
+is_exclude_attr (const char *path, h5trav_type_t type, diff_opt_t *opts)
+{
+ struct exclude_path_list *exclude_ptr;
+ int ret_cmp;
+ int ret_value = 0;
+
+ /* check if exclude attr option is given */
+ if (!opts->exclude_attr_path)
+ H5TOOLS_GOTO_DONE(0);
+
+ /* assign to local exclude list pointer */
+ exclude_ptr = opts->exclude_attr;
+
+ /* search objects in exclude list */
+ while (NULL != exclude_ptr) {
+ /* if exclude path is is group, exclude its members as well */
+ if (exclude_ptr->obj_type == H5TRAV_TYPE_GROUP) {
+ ret_cmp = HDstrncmp(exclude_ptr->obj_path, path,
+ HDstrlen(exclude_ptr->obj_path));
+ if (ret_cmp == 0) { /* found matching members */
+ size_t len_grp;
+
+ /* check if given path belong to an excluding group, if so
+ * exclude it as well.
+ * This verifies if “/grp1/dset1” is only under “/grp1”, but
+ * not under “/grp1xxx/” group.
+ */
+ len_grp = HDstrlen(exclude_ptr->obj_path);
+ if (path[len_grp] == '/') {
+ /* belong to excluded group! */
+ ret_value = 1;
+ break; /* while */
+ }
+ }
+ }
+ /* exclude target is not group, just exclude the object */
+ else {
+ ret_cmp = HDstrcmp(exclude_ptr->obj_path, path);
+ if (ret_cmp == 0) { /* found matching object */
+ /* excluded non-group object */
+ ret_value = 1;
+ /* remember the type of this matching object.
+ * if it's group, it can be used for excluding its member
+ * objects in this while() loop */
+ exclude_ptr->obj_type = type;
+ break; /* while */
+ }
+ }
+ exclude_ptr = exclude_ptr->next;
+ }
+
+done:
+ return ret_value;
+}
+
/*-------------------------------------------------------------------------
* Function: free_exclude_path_list
@@ -243,6 +308,25 @@ free_exclude_path_list(diff_opt_t *opts)
}
}
+
+/*-------------------------------------------------------------------------
+ * Function: free_exclude_attr_list
+ *
+ * Purpose: free exclude object attribute list from diff options
+ *------------------------------------------------------------------------*/
+static void
+free_exclude_attr_list(diff_opt_t *opts)
+{
+ struct exclude_path_list *curr = opts->exclude_attr;
+ struct exclude_path_list *next;
+
+ while (NULL != curr) {
+ next = curr->next;
+ HDfree(curr);
+ curr = next;
+ }
+}
+
/*-------------------------------------------------------------------------
* Function: build_match_list
*
@@ -288,6 +372,7 @@ build_match_list (const char *objname1, trav_info_t *info1, const char *objname2
* All the objects belong to given groups are the candidates.
* So prepare to compare paths without the group names.
*/
+ H5TOOLS_DEBUG("objname1 = %s objname2 = %s ", objname1, objname2);
/* if obj1 is not root */
if (HDstrcmp (objname1,"/") != 0)
@@ -572,8 +657,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
*-------------------------------------------------------------------------
*/
/* open file 1 */
- if (opts->custom_vol_1) {
- if((fapl1_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info_1), NULL)) < 0 ) {
+ if (opts->custom_vol[0]) {
+ if((fapl1_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info[0]), NULL)) < 0 ) {
parallel_print("h5diff: unable to create fapl for input file\n");
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "unable to create input fapl\n");
}
@@ -587,8 +672,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
/* open file 2 */
- if (opts->custom_vol_2) {
- if((fapl2_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info_2), NULL)) < 0 ) {
+ if (opts->custom_vol[1]) {
+ if((fapl2_id = h5tools_get_fapl(H5P_DEFAULT, &(opts->vol_info[1]), NULL)) < 0 ) {
parallel_print("h5diff: unable to create fapl for output file\n");
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "unable to create output fapl\n");
}
@@ -627,6 +712,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
}
else
obj1fullname = HDstrdup(objname1);
+ H5TOOLS_DEBUG("obj1fullname = %s", obj1fullname);
/* make the given object2 fullpath, start with "/" */
if (HDstrncmp(objname2, "/", 1)) {
@@ -644,6 +730,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
}
else
obj2fullname = HDstrdup(objname2);
+ H5TOOLS_DEBUG("obj2fullname = %s", obj2fullname);
/*----------------------------------------------------------
* check if obj1 is root, group, single object or symlink
@@ -777,12 +864,12 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
H5TOOLS_DEBUG("h5diff ... dangling link");
if (opts->no_dangle_links) {
/* treat dangling link as error */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("Warning: <%s> is a dangling link.\n", obj1fullname);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "treat dangling link as error");
}
else {
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("obj1 <%s> is a dangling link.\n", obj1fullname);
if (l_ret1 != 0 || l_ret2 != 0) {
nfound++;
@@ -818,12 +905,12 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
H5TOOLS_DEBUG("h5diff ... dangling link");
if (opts->no_dangle_links) {
/* treat dangling link as error */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("Warning: <%s> is a dangling link.\n", obj2fullname);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "treat dangling link as error");
}
else {
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("obj2 <%s> is a dangling link.\n", obj2fullname);
if (l_ret1 != 0 || l_ret2 != 0) {
nfound++;
@@ -857,8 +944,8 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
* comparing details of same objects.
*/
- if(!(opts->m_verbose || opts->m_report)) {
- H5TOOLS_DEBUG("h5diff NOT (opts->m_verbose || opts->m_report)");
+ if(!(opts->mode_verbose || opts->mode_report)) {
+ H5TOOLS_DEBUG("h5diff NOT (opts->mode_verbose || opts->mode_report)");
/* if no danglink links */
if (l_ret1 > 0 && l_ret2 > 0)
if (h5tools_is_obj_same(file1_id, obj1fullname, file2_id, obj2fullname) != 0)
@@ -924,9 +1011,14 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
/*------------------------------------------------------
* print the list
*/
- if(opts->m_verbose) {
+ if(opts->mode_verbose) {
unsigned u;
+ if(opts->mode_verbose_level > 2) {
+ parallel_print("file1: %s\n", fname1);
+ parallel_print("file2: %s\n", fname2);
+ }
+
parallel_print("\n");
/* if given objects is group under root */
if (HDstrcmp (obj1fullname,"/") || HDstrcmp (obj2fullname,"/"))
@@ -947,6 +1039,7 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
nfound = diff_match(file1_id, obj1fullname, info1_lp,
file2_id, obj2fullname, info2_lp,
match_list, opts);
+ H5TOOLS_DEBUG("diff_match nfound: %d - errstat:%d", nfound, opts->err_stat);
done:
opts->err_stat = opts->err_stat | ret_value;
@@ -1047,12 +1140,14 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
*-------------------------------------------------------------------------
*/
+ H5TOOLS_DEBUG("exclude_path opts->contents:%d", opts->contents);
/* not valid compare used when --exclude-path option is used */
if (!opts->exclude_path) {
/* number of different objects */
if (info1->nused != info2->nused) {
opts->contents = 0;
}
+ H5TOOLS_DEBUG("opts->exclude_path opts->contents:%d", opts->contents);
}
/* objects in one file and not the other */
@@ -1061,6 +1156,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
opts->contents = 0;
break;
}
+ H5TOOLS_DEBUG("table->nobjs[%d] opts->contents:%d", i, opts->contents);
}
/*-------------------------------------------------------------------------
@@ -1133,9 +1229,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
opts->cmn_objs = 1;
if(!g_Parallel) {
H5TOOLS_DEBUG("diff paths - errstat:%d", opts->err_stat);
- nfound += diff(file1_id, obj1_fullpath,
- file2_id, obj2_fullpath,
- opts, &argdata);
+ nfound += diff(file1_id, obj1_fullpath, file2_id, obj2_fullpath, opts, &argdata);
} /* end if */
#ifdef H5_HAVE_PARALLEL
else {
@@ -1380,6 +1474,8 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
opts->err_stat = opts->err_stat | ret_value;
+ free_exclude_attr_list (opts);
+
/* free table */
if (table)
trav_table_free(table);
@@ -1404,7 +1500,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
*-------------------------------------------------------------------------
*/
hsize_t
-diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t * opts, diff_args_t *argdata)
+diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t *opts, diff_args_t *argdata)
{
int status = -1;
hid_t dset1_id = H5I_INVALID_HID;
@@ -1453,7 +1549,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
if (status == 0) {
if (opts->no_dangle_links) {
/* dangling link is error */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("Warning: <%s> is a dangling link.\n", path1);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "dangling link is error");
}
@@ -1468,7 +1564,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
if (status == 0) {
if (opts->no_dangle_links) {
/* dangling link is error */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("Warning: <%s> is a dangling link.\n", path2);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "dangling link is error");
}
@@ -1494,11 +1590,11 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
/* if objects are not the same type */
if (argdata->type[0] != argdata->type[1]) {
H5TOOLS_DEBUG("diff objects are not the same");
- if (opts->m_verbose||opts->m_list_not_cmp) {
+ if (opts->mode_verbose||opts->mode_list_not_cmp) {
parallel_print("Not comparable: <%s> is of type %s and <%s> is of type %s\n",
- path1, get_type(argdata->type[0]),
- path2, get_type(argdata->type[1]));
+ path1, get_type(argdata->type[0]), path2, get_type(argdata->type[1]));
}
+
opts->not_cmp = 1;
/* TODO: will need to update non-comparable is different
* opts->contents = 0;
@@ -1523,7 +1619,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
object_type == H5TRAV_TYPE_GROUP);
if (opts->follow_links || is_hard_link) {
/* print information is only verbose option is used */
- if(opts->m_verbose || opts->m_report) {
+ if(opts->mode_verbose || opts->mode_report) {
switch(object_type) {
case H5TRAV_TYPE_DATASET:
do_print_objname("dataset", path1, path2, opts);
@@ -1552,7 +1648,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
} /* switch(type)*/
print_found(nfound);
- } /* if(opts->m_verbose || opts->m_report) */
+ } /* if(opts->mode_verbose || opts->mode_report) */
/* exact same, so comparison is done */
H5TOOLS_GOTO_DONE(H5DIFF_NO_ERR);
@@ -1570,15 +1666,16 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dopen2 failed");
if((dset2_id = H5Dopen2(file2_id, path2, H5P_DEFAULT)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dopen2 failed");
+ H5TOOLS_DEBUG("paths: %s - %s", path1, path2);
/* verbose (-v) and report (-r) mode */
- if(opts->m_verbose || opts->m_report) {
+ if(opts->mode_verbose || opts->mode_report) {
do_print_objname("dataset", path1, path2, opts);
H5TOOLS_DEBUG("call diff_dataset 1:%s 2:%s ", path1, path2);
nfound = diff_dataset(file1_id, file2_id, path1, path2, opts);
print_found(nfound);
}
/* quiet mode (-q), just count differences */
- else if(opts->m_quiet) {
+ else if(opts->mode_quiet) {
nfound = diff_dataset(file1_id, file2_id, path1, path2, opts);
}
/* the rest (-c, none, ...) */
@@ -1598,7 +1695,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
* referenced object
*---------------------------------------------------------
*/
- if(path1) {
+ if(path1 && !is_exclude_attr(path1, object_type, opts)) {
H5TOOLS_DEBUG( "call diff_attr 1:%s 2:%s ", path1, path2);
nfound += diff_attr(dset1_id, dset2_id, path1, path2, opts);
}
@@ -1630,7 +1727,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
do_print_objname("datatype", path1, path2, opts);
/* always print the number of differences found in verbose mode */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
print_found(nfound);
/*-----------------------------------------------------------------
@@ -1639,7 +1736,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
* referenced object
*-----------------------------------------------------------------
*/
- if(path1) {
+ if(path1 && !is_exclude_attr(path1, object_type, opts)) {
H5TOOLS_DEBUG("call diff_attr 1:%s 2:%s ", path1, path2);
nfound += diff_attr(type1_id, type2_id, path1, path2, opts);
}
@@ -1660,7 +1757,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
do_print_objname("group", path1, path2, opts);
/* always print the number of differences found in verbose mode */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
print_found(nfound);
if((grp1_id = H5Gopen2(file1_id, path1, H5P_DEFAULT)) < 0)
@@ -1674,7 +1771,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
* referenced object
*-----------------------------------------------------------------
*/
- if(path1) {
+ if(path1 && !is_exclude_attr(path1, object_type, opts)) {
H5TOOLS_DEBUG("call diff_attr 1:%s 2:%s ", path1, path2);
nfound += diff_attr(grp1_id, grp2_id, path1, path2, opts);
}
@@ -1702,7 +1799,7 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
do_print_objname("link", path1, path2, opts);
/* always print the number of differences found in verbose mode */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
print_found(nfound);
}
break;
@@ -1752,14 +1849,14 @@ diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_
} /* end else */
/* always print the number of differences found in verbose mode */
- if(opts->m_verbose)
+ if(opts->mode_verbose)
print_found(nfound);
}
break;
case H5TRAV_TYPE_UNKNOWN:
default:
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("Comparison not supported: <%s> and <%s> are of type %s\n",
path1, path2, get_type(object_type) );
opts->not_cmp = 1;
@@ -1781,7 +1878,7 @@ done:
}
/* path1 is dangling link */
else if (is_dangle_link1) {
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("obj1 <%s> is a dangling link.\n", path1);
nfound++;
if(print_objname(opts, nfound))
@@ -1789,7 +1886,7 @@ done:
}
/* path2 is dangling link */
else if (is_dangle_link2) {
- if(opts->m_verbose)
+ if(opts->mode_verbose)
parallel_print("obj2 <%s> is a dangling link.\n", path2);
nfound++;
if(print_objname(opts, nfound))
diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h
index 37eb775..f44f653 100644
--- a/tools/lib/h5diff.h
+++ b/tools/lib/h5diff.h
@@ -18,23 +18,6 @@
#include "h5tools.h"
#include "h5trav.h"
-/*
- * Debug printf macros. The prefix allows output filtering by test scripts.
- */
-#ifdef H5DIFF_DEBUG
-#define h5difftrace(x) HDfprintf(stderr, "h5diff debug: " x)
-#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2)
-#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3)
-#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4)
-#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5)
-#else
-#define h5difftrace(x)
-#define h5diffdebug2(x1, x2)
-#define h5diffdebug3(x1, x2, x3)
-#define h5diffdebug4(x1, x2, x3, x4)
-#define h5diffdebug5(x1, x2, x3, x4, x5)
-#endif
-
#define MAX_FILENAME 1024
/*-------------------------------------------------------------------------
@@ -58,6 +41,7 @@ struct exclude_path_list {
struct exclude_path_list *next;
};
+
/* Enumeration value for keeping track of whether an error occurred or differences were found */
typedef enum {
H5DIFF_NO_ERR, /* No error occurred */
@@ -66,31 +50,47 @@ typedef enum {
} diff_err_t;
typedef struct {
- int m_quiet; /* quiet mode: no output at all */
- int m_report; /* report mode: print the data */
- int m_verbose; /* verbose mode: print the data, list of objcets, warnings */
- int m_verbose_level; /* control verbose details */
- int d; /* delta, absolute value to compare */
- double delta; /* delta value */
- int p; /* relative error to compare*/
- int use_system_epsilon; /* flag to use system epsilon (1 or 0) */
- double percent; /* relative error value */
- int n; /* count, compare up to count */
- hsize_t count; /* count value */
- hbool_t follow_links; /* follow symbolic links */
- int no_dangle_links; /* return error when find dangling link */
- diff_err_t err_stat; /* an error ocurred (2, error, 1, differences, 0, no error) */
- int cmn_objs; /* do we have common objects */
- int not_cmp; /* are the objects comparable */
- int contents; /* equal contents */
- int do_nans; /* consider Nans while diffing floats */
- int m_list_not_cmp; /* list not comparable messages */
- int exclude_path; /* exclude path to an object */
- struct exclude_path_list * exclude; /* keep exclude path list */
- h5tools_vol_info_t vol_info_1; /* VOL information for input file */
- h5tools_vol_info_t vol_info_2; /* VOL information for output file */
- hbool_t custom_vol_1; /* Using a custom input VOL? */
- hbool_t custom_vol_2; /* Using a custom output VOL? */
+ int mode_quiet; /* quiet mode: no output at all */
+ int mode_report; /* report mode: print the data */
+ int mode_verbose; /* verbose mode: print the data, list of objcets, warnings */
+ int mode_verbose_level; /* control verbose details */
+ int mode_list_not_cmp; /* list not comparable messages */
+ int print_header; /* print header */
+ int print_percentage; /* print percentage */
+ int print_dims; /* print dimension index */
+ int delta_bool; /* delta, absolute value to compare */
+ double delta; /* delta value */
+ int use_system_epsilon; /* flag to use system epsilon (1 or 0) */
+ int percent_bool; /* relative error to compare*/
+ double percent; /* relative error value */
+ hbool_t follow_links; /* follow symbolic links */
+ int no_dangle_links; /* return error when find dangling link */
+ int cmn_objs; /* do we have common objects */
+ int not_cmp; /* are the objects comparable */
+ int contents; /* equal contents */
+ int do_nans; /* consider Nans while diffing floats */
+ int exclude_path; /* exclude path to an object */
+ int exclude_attr_path; /* exclude path to an object */
+ struct exclude_path_list *exclude; /* keep exclude path list */
+ struct exclude_path_list *exclude_attr; /* keep exclude attribute list */
+ int count_bool; /* count, compare up to count */
+ hsize_t count; /* count value */
+ diff_err_t err_stat; /* an error ocurred (2, error, 1, differences, 0, no error) */
+ hsize_t nelmts; /* total number of elements */
+ hsize_t hs_nelmts; /* number of elements to read at a time*/
+ int rank; /* dimensionality */
+ size_t m_size; /* m_size for diff */
+ hid_t m_tid; /* m_tid for diff */
+ hsize_t dims[H5S_MAX_RANK]; /* dimensions of object */
+ hsize_t p_min_idx[H5S_MAX_RANK]; /* min selected index */
+ hsize_t p_max_idx[H5S_MAX_RANK]; /* max selected index */
+ hsize_t acc[H5S_MAX_RANK]; /* accumulator position */
+ hsize_t pos[H5S_MAX_RANK]; /* matrix position */
+ hsize_t sm_pos[H5S_MAX_RANK]; /* stripmine position */
+ char *obj_name[2]; /* name for object */
+ struct subset_t *sset[2]; /* subsetting parameters */
+ h5tools_vol_info_t vol_info[2]; /* VOL information for input file, output file */
+ hbool_t custom_vol[2]; /* Using a custom input, output VOL? */
} diff_opt_t;
@@ -103,18 +103,9 @@ typedef struct {
extern "C" {
#endif
-H5TOOLS_DLL hsize_t h5diff(const char *fname1,
- const char *fname2,
- const char *objname1,
- const char *objname2,
- diff_opt_t *opts);
+H5TOOLS_DLL hsize_t h5diff(const char *fname1, const char *fname2, const char *objname1, const char *objname2, diff_opt_t *opts);
-H5TOOLS_DLL hsize_t diff( hid_t file1_id,
- const char *path1,
- hid_t file2_id,
- const char *path2,
- diff_opt_t *opts,
- diff_args_t *argdata);
+H5TOOLS_DLL hsize_t diff(hid_t file1_id, const char *path1, hid_t file2_id, const char *path2, diff_opt_t *opts, diff_args_t *argdata);
#ifdef H5_HAVE_PARALLEL
H5TOOLS_DLL void phdiff_dismiss_workers(void);
@@ -133,63 +124,29 @@ H5TOOLS_DLL void print_manager_output(void);
*/
-hsize_t diff_dataset( hid_t file1_id,
- hid_t file2_id,
- const char *obj1_name,
- const char *obj2_name,
- diff_opt_t *opts);
-
-hsize_t diff_datasetid( hid_t dset1_id,
- hid_t dset2_id,
- const char *obj1_name,
- const char *obj2_name,
- diff_opt_t *opts);
-
-
-hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1,
- hid_t file2_id, const char *grp2, trav_info_t *info2,
- trav_table_t *table, diff_opt_t *opts );
-
-hsize_t diff_array( void *_mem1,
- void *_mem2,
- hsize_t nelmts,
- hsize_t hyper_start,
- int rank,
- hsize_t *dims,
- diff_opt_t *opts,
- const char *name1,
- const char *name2,
- hid_t m_type,
- hid_t container1_id,
- hid_t container2_id); /* dataset where the reference came from*/
-
-
-int diff_can_type( hid_t f_type1, /* file data type */
- hid_t f_type2, /* file data type */
- int rank1,
- int rank2,
- hsize_t *dims1,
- hsize_t *dims2,
- hsize_t *maxdim1,
- hsize_t *maxdim2,
- const char *obj1_name,
- const char *obj2_name,
- diff_opt_t *opts,
- int is_compound);
-
-hsize_t diff_attr_data(hid_t attr1_id,
- hid_t attr2_id,
- const char *attr1_name,
- const char *attr2_name,
- const char *path1,
- const char *path2,
- diff_opt_t *opts);
-
-hsize_t diff_attr(hid_t loc1_id,
- hid_t loc2_id,
- const char *path1,
- const char *path2,
- diff_opt_t *opts);
+hsize_t diff_dataset(hid_t file1_id, hid_t file2_id,
+ const char *obj1_name, const char *obj2_name, diff_opt_t *opts);
+
+hsize_t diff_datasetid(hid_t dset1_id, hid_t dset2_id,
+ const char *obj1_name, const char *obj2_name, diff_opt_t *opts);
+
+
+hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1,
+ hid_t file2_id, const char *grp2, trav_info_t *info2,
+ trav_table_t *table, diff_opt_t *opts);
+
+hsize_t diff_array(void *_mem1, void *_mem2,
+ diff_opt_t *opts, hid_t container1_id, hid_t container2_id);
+
+int diff_can_type(hid_t f_type1, hid_t f_type2, int rank1, int rank2,
+ hsize_t *dims1, hsize_t *dims2, hsize_t *maxdim1, hsize_t *maxdim2,
+ diff_opt_t *opts, int is_compound);
+
+hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const char *name2,
+ const char *path1, const char *path2, diff_opt_t *opts);
+
+hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id,
+ const char *path1, const char *path2, diff_opt_t *opts);
/*-------------------------------------------------------------------------
diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c
index 52bae51..1a4c727 100644
--- a/tools/lib/h5diff_array.c
+++ b/tools/lib/h5diff_array.c
@@ -132,97 +132,39 @@ typedef struct mcomp_t {
* local prototypes
*-------------------------------------------------------------------------
*/
-static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id,
- hid_t region2_id, diff_opt_t *opts);
static hbool_t all_zero(const void *_mem, size_t size);
static int ull2float(unsigned long long ull_value, float *f_value);
-static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u,
- int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos,
- diff_opt_t *opts, const char *obj1, const char *obj2, int *ph);
-static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2,
- hsize_t i, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos,
- diff_opt_t *opts, const char *obj1, const char *obj2, int *ph);
+static hsize_t character_compare(char *mem1, char *mem2, hsize_t elemtno, size_t u, diff_opt_t *opts);
+static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, hsize_t elemtno, diff_opt_t *opts);
static hbool_t equal_float(float value, float expected, diff_opt_t *opts);
static hbool_t equal_double(double value, double expected, diff_opt_t *opts);
#if H5_SIZEOF_LONG_DOUBLE !=0
static hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *opts);
#endif
+
static int print_data(diff_opt_t *opts);
-static void print_pos(int *ph, int pp, hsize_t curr_pos, hsize_t *acc,
- hsize_t *pos, int rank, hsize_t *dims, const char *obj1,
- const char *obj2);
-static void print_char_pos(int *ph, int pp, hsize_t curr_pos, size_t u,
- hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims, const char *obj1,
- const char *obj2);
+static void print_pos(diff_opt_t *opts, hsize_t elemtno, size_t u);
static void h5diff_print_char(char ch);
-static hsize_t diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx,
- int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos,
- diff_opt_t *opts, const char *obj1, const char *obj2,
- hid_t container1_id, hid_t container2_id, /*where the reference came from*/
- int *ph, /*print header */
- mcomp_t *members); /*compound members */
-static hsize_t diff_float(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_double(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
+
+static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t region2_id, diff_opt_t *opts);
+static hsize_t diff_datum(void *_mem1, void *_mem2, hsize_t elemtno, diff_opt_t *opts,
+ hid_t container1_id, hid_t container2_id, mcomp_t *members);
+/* element diffs */
+static hsize_t diff_float_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_double_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
#if H5_SIZEOF_LONG_DOUBLE !=0
-static hsize_t diff_ldouble(unsigned char *mem1,
- unsigned char *mem2,
- hsize_t nelmts,
- hsize_t hyper_start,
- int rank,
- hsize_t *dims,
- hsize_t *acc,
- hsize_t *pos,
- diff_opt_t *opts,
- const char *obj1,
- const char *obj2,
- int *ph);
+static hsize_t diff_ldouble_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
#endif
-static hsize_t diff_schar(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_uchar(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_short(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_ushort(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_int(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_uint(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_long(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_ulong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_llong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
-static hsize_t diff_ullong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph);
+static hsize_t diff_schar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_uchar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_short_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_ushort_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_int_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_uint_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_long_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_ulong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_llong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
+static hsize_t diff_ullong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts);
/*-------------------------------------------------------------------------
* NaN detection
@@ -260,26 +202,23 @@ static void close_member_types(mcomp_t *members);
*-------------------------------------------------------------------------
*/
-hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start,
- int rank, hsize_t *dims, diff_opt_t *opts, const char *name1, const char *name2,
- hid_t m_type, hid_t container1_id, hid_t container2_id)
+hsize_t
+diff_array(void *_mem1, void *_mem2, diff_opt_t *opts, hid_t container1_id, hid_t container2_id)
{
hsize_t nfound = 0; /* number of differences found */
size_t size; /* size of datum */
unsigned char *mem1 = (unsigned char*) _mem1;
unsigned char *mem2 = (unsigned char*) _mem2;
- hsize_t acc[32]; /* accumulator position */
- hsize_t pos[32]; /* matrix position */
- int ph = 1; /* print header */
hsize_t i;
- int j;
mcomp_t members;
H5T_class_t type_class;
- H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat);
+ H5TOOLS_START_DEBUG(" - rank:%d hs_nelmts:%ld errstat:%d", opts->rank, opts->hs_nelmts, opts->err_stat);
+ opts->print_header = 1; /* enable print header */
+
/* get the size. */
- size = H5Tget_size(m_type);
- type_class = H5Tget_class(m_type);
+ size = H5Tget_size(opts->m_tid);
+ type_class = H5Tget_class(opts->m_tid);
/* Fast comparison first for atomic type by memcmp().
* It is OK not to list non-atomic type here because it will not be caught
@@ -289,24 +228,18 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start
type_class != H5T_COMPOUND &&
type_class != H5T_STRING &&
type_class != H5T_VLEN &&
- HDmemcmp(mem1, mem2, size*nelmts) == 0)
+ HDmemcmp(mem1, mem2, size * opts->hs_nelmts) == 0) {
+ H5TOOLS_ENDDEBUG(":Fast comparison - errstat:%d", opts->err_stat);
return 0;
-
- if (rank > 0) {
- acc[rank - 1] = 1;
- for (j = (rank - 2); j >= 0; j--) {
- acc[j] = acc[j + 1] * dims[j + 1];
- }
- for (j = 0; j < rank; j++)
- pos[j] = 0;
}
- H5TOOLS_DEBUG("diff_array type_class:%d", type_class);
+ H5TOOLS_DEBUG("type_class:%d", type_class);
switch (type_class) {
case H5T_NO_CLASS:
case H5T_TIME:
case H5T_NCLASSES:
default:
+ H5TOOLS_DEBUG("type_class:INVALID");
HDassert(0);
break;
@@ -315,37 +248,142 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start
*-------------------------------------------------------------------------
*/
case H5T_FLOAT:
- if (H5Tequal(m_type, H5T_NATIVE_FLOAT))
- nfound = diff_float(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_DOUBLE))
- nfound = diff_double(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
+ H5TOOLS_DEBUG("type_class:H5T_FLOAT");
+ if (H5Tequal(opts->m_tid, H5T_NATIVE_FLOAT)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_float_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(float);
+ mem2 += sizeof(float);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_DOUBLE)){
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_double_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(double);
+ mem2 += sizeof(double);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
#if H5_SIZEOF_LONG_DOUBLE != 0
- else if (H5Tequal(m_type, H5T_NATIVE_LDOUBLE))
- nfound = diff_ldouble(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_LDOUBLE)) {
+ for ( i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_ldouble_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(long double);
+ mem2 += sizeof(long double);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
#endif
break;
case H5T_INTEGER:
- if (H5Tequal(m_type, H5T_NATIVE_SCHAR))
- nfound = diff_schar(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_UCHAR))
- nfound = diff_uchar(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_SHORT))
- nfound = diff_short(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_USHORT))
- nfound = diff_ushort(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_INT))
- nfound = diff_int(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_UINT))
- nfound = diff_uint(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_LONG))
- nfound = diff_long(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_ULONG))
- nfound = diff_ulong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_LLONG))
- nfound = diff_llong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
- else if (H5Tequal(m_type, H5T_NATIVE_ULLONG))
- nfound = diff_ullong(mem1, mem2, nelmts, hyper_start, rank, dims, acc, pos, opts, name1, name2, &ph);
+ H5TOOLS_DEBUG("type_class:H5T_INTEGER");
+ if (H5Tequal(opts->m_tid, H5T_NATIVE_SCHAR)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_schar_element(mem1, mem2, i, opts);
+ mem1 += sizeof(char);
+ mem2 += sizeof(char);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_UCHAR)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_uchar_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(unsigned char);
+ mem2 += sizeof(unsigned char);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_SHORT)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_short_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(short);
+ mem2 += sizeof(short);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_USHORT)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_ushort_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(unsigned short);
+ mem2 += sizeof(unsigned short);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_INT)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_int_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(int);
+ mem2 += sizeof(int);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_UINT)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_int_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(unsigned int);
+ mem2 += sizeof(unsigned int);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_LONG)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_long_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(long);
+ mem2 += sizeof(long);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_ULONG)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_ulong_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(unsigned long);
+ mem2 += sizeof(unsigned long);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_LLONG)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_llong_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(long long);
+ mem2 += sizeof(long long);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
+ else if (H5Tequal(opts->m_tid, H5T_NATIVE_ULLONG)) {
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ nfound += diff_ullong_element(mem1, mem2, i, opts);
+
+ mem1 += sizeof(unsigned long long);
+ mem2 += sizeof(unsigned long long);
+ if (opts->count_bool && nfound >= opts->count)
+ return nfound;
+ } /* nelmts */
+ }
break;
/*-------------------------------------------------------------------------
@@ -360,13 +398,13 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start
case H5T_ARRAY:
case H5T_VLEN:
case H5T_REFERENCE:
+ H5TOOLS_DEBUG("type_class:OTHER");
HDmemset(&members, 0, sizeof(mcomp_t));
- get_member_types(m_type, &members);
- H5TOOLS_DEBUG("call diff_datum nelmts:%d - errstat:%d", nelmts, opts->err_stat);
- for (i = 0; i < nelmts; i++) {
- nfound += diff_datum(mem1 + i * size, mem2 + i * size, m_type, i, rank, dims, acc, pos, opts,
- name1, name2, container1_id, container2_id, &ph, &members);
- if (opts->n && nfound >= opts->count)
+ get_member_types(opts->m_tid, &members);
+ for (i = 0; i < opts->hs_nelmts; i++) {
+ H5TOOLS_DEBUG("opts->pos[%ld]:%ld - nelmts:%ld", i, opts->pos[i], opts->hs_nelmts);
+ nfound += diff_datum(mem1 + i * size, mem2 + i * size, i, opts, container1_id, container2_id, &members);
+ if (opts->count_bool && nfound >= opts->count)
break;
} /* i */
close_member_types(&members);
@@ -409,12 +447,7 @@ hsize_t diff_array(void *_mem1, void *_mem2, hsize_t nelmts, hsize_t hyper_start
*-------------------------------------------------------------------------
*/
static hsize_t
-diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
- hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts,
- const char *obj1, const char *obj2,
- hid_t container1_id, hid_t container2_id,
- int *ph, /*print header */
- mcomp_t *members) /*compound members */
+diff_datum(void *_mem1, void *_mem2, hsize_t elemtno, diff_opt_t *opts, hid_t container1_id, hid_t container2_id, mcomp_t *members)
{
unsigned char *mem1 = (unsigned char*) _mem1;
unsigned char *mem2 = (unsigned char*) _mem2;
@@ -425,7 +458,6 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
size_t offset;
unsigned nmembs;
unsigned j;
- hsize_t nelmts;
size_t size = 0;
hbool_t iszero1;
hbool_t iszero2;
@@ -434,10 +466,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
hbool_t both_zero;
diff_err_t ret_value = opts->err_stat;
- H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat);
+ H5TOOLS_START_DEBUG("ph:%d elemtno:%d - errstat:%d", opts->print_header, elemtno, opts->err_stat);
- type_size = H5Tget_size(m_type);
- type_class = H5Tget_class(m_type);
+ type_size = H5Tget_size(opts->m_tid);
+ type_class = H5Tget_class(opts->m_tid);
/* Fast comparison first for atomic type by memcmp().
* It is OK not to list non-atomic type here because it will not be caught
@@ -450,7 +482,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
HDmemcmp(mem1, mem2, type_size) == 0)
H5TOOLS_GOTO_DONE(opts->err_stat);
- switch (H5Tget_class(m_type)) {
+ switch (H5Tget_class(opts->m_tid)) {
case H5T_NO_CLASS:
case H5T_TIME:
case H5T_NCLASSES:
@@ -463,18 +495,22 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_COMPOUND:
- H5TOOLS_DEBUG("diff_datum H5T_COMPOUND");
+ H5TOOLS_DEBUG("H5T_COMPOUND");
{
- hid_t memb_type = H5I_INVALID_HID;
+ diff_opt_t cmpd_opts;
+
+ cmpd_opts = *opts;
nmembs = members->n;
for (j = 0; j < nmembs; j++) {
offset = members->offsets[j];
- memb_type = members->ids[j];
+ cmpd_opts.m_tid = members->ids[j];
- nfound += diff_datum(mem1 + offset, mem2 + offset, memb_type, idx,
- rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members->m[j]);
+ nfound += diff_datum(mem1 + offset, mem2 + offset, elemtno, &cmpd_opts, container1_id, container2_id, members->m[j]);
}
+ opts->err_stat = opts->err_stat | cmpd_opts.err_stat;
+ opts->print_header = cmpd_opts.print_header;
+ opts->not_cmp = cmpd_opts.not_cmp;
}
break;
@@ -483,7 +519,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_STRING:
- H5TOOLS_DEBUG("diff_datum H5T_STRING");
+ H5TOOLS_DEBUG("H5T_STRING");
{
char *s = NULL;
char *sx = NULL;
@@ -492,12 +528,12 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
size_t size1;
size_t size2;
size_t sizex;
- size_t size_mtype = H5Tget_size(m_type);
- H5T_str_t pad = H5Tget_strpad(m_type);
+ size_t size_mtype = H5Tget_size(opts->m_tid);
+ H5T_str_t pad = H5Tget_strpad(opts->m_tid);
/* if variable length string */
- if (H5Tis_variable_str(m_type)) {
- H5TOOLS_DEBUG("diff_datum H5T_STRING variable");
+ if (H5Tis_variable_str(opts->m_tid)) {
+ H5TOOLS_DEBUG("H5T_STRING variable");
/* Get pointer to first string */
s1 = *(char **)((void *)mem1);
if (s1)
@@ -513,7 +549,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
size2 = 0;
}
else if (H5T_STR_NULLTERM == pad) {
- H5TOOLS_DEBUG("diff_datum H5T_STRING null term");
+ H5TOOLS_DEBUG("H5T_STRING null term");
/* Get pointer to first string */
s1 = (char*) mem1;
if (s1)
@@ -550,10 +586,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
* of length of strings.
* For now mimic the previous way.
*/
- H5TOOLS_DEBUG("diff_datum string size:%d", size1);
- H5TOOLS_DEBUG("diff_datum string size:%d", size2);
+ H5TOOLS_DEBUG("string size:%d", size1);
+ H5TOOLS_DEBUG("string size:%d", size2);
if (size1 != size2) {
- H5TOOLS_DEBUG("diff_datum string sizes difference");
+ H5TOOLS_DEBUG("string sizes difference");
nfound++;
}
if (size1 < size2) {
@@ -572,15 +608,13 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
/* check for NULL pointer for string */
if (s != NULL) {
/* try fast compare first */
- if (HDmemcmp(s, sx, size) == 0) {
- if (size1 != size2)
- if (print_data(opts))
- for (u = size; u < sizex; u++)
- character_compare(s + u, sx + u, idx, u, rank, dims, acc, pos, opts, obj1, obj2, ph);
+ if ((HDmemcmp(s, sx, size) == 0) && (size1 != size2)) {
+ for (u = size; u < sizex; u++)
+ character_compare(s + u, sx + u, elemtno, u, opts);
}
else
for (u = 0; u < size; u++)
- nfound += character_compare(s + u, sx + u, idx, u, rank, dims, acc, pos, opts, obj1, obj2, ph);
+ nfound += character_compare(s + u, sx + u, elemtno, u, opts);
} /* end check for NULL pointer for string */
}
break;
@@ -590,10 +624,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_BITFIELD:
- H5TOOLS_DEBUG("diff_datum H5T_BITFIELD");
+ H5TOOLS_DEBUG("H5T_BITFIELD");
/* byte-by-byte comparison */
for (u = 0; u < type_size; u++)
- nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph);
+ nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts);
break;
/*-------------------------------------------------------------------------
@@ -601,10 +635,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_OPAQUE:
- H5TOOLS_DEBUG("diff_datum H5T_OPAQUE");
+ H5TOOLS_DEBUG("H5T_OPAQUE");
/* byte-by-byte comparison */
for (u = 0; u < type_size; u++)
- nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph);
+ nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts);
break;
/*-------------------------------------------------------------------------
@@ -617,7 +651,7 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
* compared, we convert both bit patterns to their corresponding
* enumeration constant and do a string comparison
*/
- H5TOOLS_DEBUG("diff_datum H5T_ENUM");
+ H5TOOLS_DEBUG("H5T_ENUM");
{
char enum_name1[1024];
char enum_name2[1024];
@@ -629,11 +663,11 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
/* If the enum value cannot be converted to a string
* it is set to an error string for later output.
*/
- err1 = H5Tenum_nameof(m_type, mem1, enum_name1, sizeof enum_name1);
+ err1 = H5Tenum_nameof(opts->m_tid, mem1, enum_name1, sizeof enum_name1);
if (err1 < 0)
HDsnprintf(enum_name1, sizeof(enum_name1), "**INVALID VALUE**");
- err2 = H5Tenum_nameof(m_type, mem2, enum_name2, sizeof enum_name2);
+ err2 = H5Tenum_nameof(opts->m_tid, mem2, enum_name2, sizeof enum_name2);
if (err2 < 0)
HDsnprintf(enum_name2, sizeof(enum_name2), "**INVALID VALUE**");
@@ -644,9 +678,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
* don't attempt to convert them - just report errors.
*/
nfound += 1;
+ opts->print_percentage = 0;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(S_FORMAT, enum_name1, enum_name2);
}
}
@@ -654,15 +688,15 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
/* Both enum values were valid */
if (HDstrcmp(enum_name1, enum_name2) != 0) {
nfound = 1;
+ opts->print_percentage = 0;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(S_FORMAT, enum_name1, enum_name2);
}
}
else {
for (u = 0; u < type_size; u++)
- nfound += character_compare_opt(mem1 + u, mem2 + u, idx, rank, dims, acc, pos, opts, obj1, obj2, ph);
+ nfound += character_compare_opt(mem1 + u, mem2 + u, elemtno, opts);
}
}
/* enable error reporting */
@@ -676,26 +710,32 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*/
case H5T_ARRAY:
{
- hid_t memb_type = H5I_INVALID_HID;
hsize_t adims[H5S_MAX_RANK];
int ndims;
+ diff_opt_t arr_opts;
+
+ H5TOOLS_DEBUG("H5T_ARRAY ph=%d", opts->print_header);
- H5TOOLS_DEBUG("diff_datum H5T_ARRAY");
+ arr_opts = *opts;
+ H5TOOLS_DEBUG("Check opts: hs_nelmts:%ld to %ld rank:%d to %ld", opts->hs_nelmts, arr_opts.hs_nelmts, opts->rank, arr_opts.rank);
/* get the array's base datatype for each element */
- memb_type = H5Tget_super(m_type);
- size = H5Tget_size(memb_type);
- ndims = H5Tget_array_ndims(m_type);
- H5Tget_array_dims2(m_type, adims);
+ arr_opts.m_tid = H5Tget_super(opts->m_tid);
+ size = H5Tget_size(arr_opts.m_tid);
+ ndims = H5Tget_array_ndims(opts->m_tid);
+ H5Tget_array_dims2(opts->m_tid, adims);
HDassert(ndims >= 1 && ndims <= H5S_MAX_RANK);
+ H5TOOLS_DEBUG("attr ph=%d", arr_opts.print_header);
/* calculate the number of array elements */
- for (u = 0, nelmts = 1; u < (unsigned) ndims; u++)
- nelmts *= adims[u];
- for (u = 0; u < nelmts; u++) {
- nfound += diff_datum(mem1 + u * size, mem2 + u * size, memb_type, idx,
- rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members);
- }
- H5Tclose(memb_type);
+ for (u = 0, arr_opts.hs_nelmts = 1; u < (unsigned) ndims; u++)
+ arr_opts.hs_nelmts *= adims[u];
+ for (u = 0; u < arr_opts.hs_nelmts; u++) {
+ nfound += diff_datum(mem1 + u * size, mem2 + u * size, elemtno, &arr_opts, container1_id, container2_id, members);
+ }
+ opts->err_stat = opts->err_stat | arr_opts.err_stat;
+ opts->print_header = arr_opts.print_header;
+ opts->not_cmp = arr_opts.not_cmp;
+ H5Tclose(arr_opts.m_tid);
}
break;
@@ -704,9 +744,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_REFERENCE:
- H5TOOLS_DEBUG("diff_datum H5T_REFERENCE");
- iszero1 = all_zero(_mem1, H5Tget_size(m_type));
- iszero2 = all_zero(_mem2, H5Tget_size(m_type));
+ H5TOOLS_DEBUG("H5T_REFERENCE");
+ iszero1 = all_zero(_mem1, H5Tget_size(opts->m_tid));
+ iszero2 = all_zero(_mem2, H5Tget_size(opts->m_tid));
if (iszero1 != iszero2) {
nfound++;
H5TOOLS_GOTO_DONE(opts->err_stat);
@@ -714,13 +754,17 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
else if (!iszero1 && !iszero2) {
hid_t obj1_id = H5I_INVALID_HID;
hid_t obj2_id = H5I_INVALID_HID;
+ diff_opt_t ref_opts;
/*-------------------------------------------------------------------------
* H5T_STD_REF
* Reference
*-------------------------------------------------------------------------
*/
- if (H5Tequal(m_type, H5T_STD_REF)) {
+ ref_opts = *opts;
+ ref_opts.obj_name[0] = NULL;
+ ref_opts.obj_name[1] = NULL;
+ if (H5Tequal(ref_opts.m_tid, H5T_STD_REF)) {
/* if (type_size == H5R_STD_REF_SIZE) */
hid_t region1_id = H5I_INVALID_HID;
hid_t region2_id = H5I_INVALID_HID;
@@ -730,66 +774,67 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
H5O_type_t obj2_type = -1; /* Object type */
H5R_type_t ref_type; /* Reference type */
- H5TOOLS_DEBUG("diff_datum H5T_REFERENCE - H5T_STD_REF");
+ H5TOOLS_DEBUG("H5T_REFERENCE - H5T_STD_REF");
ref_type = H5Rget_type(ref1_buf);
switch (ref_type) {
case H5R_OBJECT1:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
- if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed");
- }
- if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed");
- }
-
- /* check object type */
- if (obj1_type != obj2_type) {
- parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2);
- opts->not_cmp = 1;
- H5TOOLS_GOTO_DONE(opts->err_stat);
- }
-
- if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Ropen_object object 1 failed");
- }
- if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Ropen_object object 2 failed");
- }
-
- switch (obj1_type) {
- case H5O_TYPE_DATASET:
- nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts);
- break;
-
- case H5O_TYPE_GROUP:
- case H5O_TYPE_NAMED_DATATYPE:
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- if (opts->m_verbose)
- parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2);
- opts->not_cmp = 1;
- break;
- } /* end switch */
- if(obj1_id >= 0)
- if(H5Oclose(obj1_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Oclose H5R_OBJECT1 failed");
+ if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) >= 0) {
+ if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) >= 0) {
+ /* check object type */
+ if (obj1_type == obj2_type) {
+ switch (obj1_type) {
+ case H5O_TYPE_DATASET:
+ if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ nfound = diff_datasetid(obj1_id, obj2_id, opts->obj_name[0], opts->obj_name[1], &ref_opts);
+ if(H5Dclose(obj2_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Dclose H5R_OBJECT1 failed");
+ }
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Ropen_object object 2 failed");
+ }
+ if(H5Dclose(obj1_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Dclose H5R_OBJECT1 failed");
+ }
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Ropen_object object 1 failed");
+ }
+ break;
+
+ case H5O_TYPE_GROUP:
+ case H5O_TYPE_NAMED_DATATYPE:
+ case H5O_TYPE_MAP:
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ if (ref_opts.mode_verbose)
+ parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ break;
+ } /* end switch */
+ }
+ else {
+ parallel_print("Different object types referenced: <%s> and <%s>", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ ref_opts.err_stat = H5DIFF_ERR;
+ }
}
- if(obj2_id >= 0)
- if(H5Oclose(obj2_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Oclose H5R_OBJECT1 failed");
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed");
}
- if(H5Rdestroy(ref2_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT1 failed");
- if(H5Rdestroy(ref1_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT1 failed");
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed");
+ }
break;
case H5R_DATASET_REGION1:
H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
@@ -797,149 +842,143 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts);
+ nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, &ref_opts);
if(H5Sclose(region2_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION1 failed");
+ H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION1 failed");
}
if(H5Sclose(region1_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION1 failed");
+ H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION1 failed");
}
- if(H5Oclose(obj2_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Oclose H5R_DATASET_REGION1 failed");
+ if(H5Dclose(obj2_id) < 0)
+ H5TOOLS_INFO("H5Oclose H5R_DATASET_REGION1 failed");
}
else {
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_object H5R_DATASET_REGION1 failed");
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
}
- if(H5Oclose(obj1_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Oclose H5R_DATASET_REGION1 failed");
+ if(H5Dclose(obj1_id) < 0)
+ H5TOOLS_INFO("H5Oclose H5R_DATASET_REGION1 failed");
}
else {
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_object H5R_DATASET_REGION1 failed");
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
}
- if(H5Rdestroy(ref2_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION1 failed");
- if(H5Rdestroy(ref1_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION1 failed");
break;
case H5R_OBJECT2:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
- if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed");
- }
- if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed");
- }
-
- /* check object type */
- if (obj1_type != obj2_type) {
- parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2);
- opts->not_cmp = 1;
- H5TOOLS_GOTO_DONE(opts->err_stat);
- }
-
- if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Ropen_object object 1 failed");
- }
- if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Ropen_object object 2 failed");
- }
-
- switch (obj1_type) {
- case H5O_TYPE_DATASET:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : DATASET");
- nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts);
- break;
-
- case H5O_TYPE_GROUP:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : GROUP");
- if (opts->m_verbose)
- parallel_print("Warning: Comparison not possible of group object types referenced: <%s> and <%s>\n", obj1, obj2);
- opts->not_cmp = 1;
- break;
-
- case H5O_TYPE_NAMED_DATATYPE:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : NAMED");
- if (opts->m_verbose)
- parallel_print("Warning: Comparison not possible of named datatypes object types referenced: <%s> and <%s>\n", obj1, obj2);
- opts->not_cmp = 1;
- break;
-
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- if (opts->m_verbose)
- parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2);
- opts->not_cmp = 1;
- break;
- } /* end switch */
- if(obj1_id >= 0)
- if(H5Oclose(obj1_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
+ if (H5Rget_obj_type3(ref1_buf, H5P_DEFAULT, &obj1_type) >= 0) {
+ if (H5Rget_obj_type3(ref2_buf, H5P_DEFAULT, &obj2_type) >= 0) {
+ /* check object type */
+ if (obj1_type == obj2_type) {
+ if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ switch (obj1_type) {
+ case H5O_TYPE_DATASET:
+ H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : DATASET");
+ nfound = diff_datasetid(obj1_id, obj2_id, opts->obj_name[0], opts->obj_name[1], &ref_opts);
+ break;
+
+ case H5O_TYPE_GROUP:
+ H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : GROUP");
+ if (ref_opts.mode_verbose)
+ parallel_print("Warning: Comparison not possible of group object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ break;
+
+ case H5O_TYPE_NAMED_DATATYPE:
+ H5TOOLS_DEBUG("ref_type is H5R_OBJECT2 : NAMED");
+ if (ref_opts.mode_verbose)
+ parallel_print("Warning: Comparison not possible of named datatypes object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ break;
+
+ case H5O_TYPE_MAP:
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ if (ref_opts.mode_verbose)
+ parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ break;
+ } /* end switch */
+ if(H5Oclose(obj2_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
+ }
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Ropen_object object 2 failed");
+ }
+ if(H5Oclose(obj1_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
+ }
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Ropen_object object 1 failed");
+ }
+ }
+ else {
+ parallel_print("Different object types referenced: <%s> and <%s>", opts->obj_name[0], opts->obj_name[1]);
+ ref_opts.not_cmp = 1;
+ ref_opts.err_stat = H5DIFF_ERR;
+ }
}
- if(obj2_id >= 0)
- if(H5Oclose(obj2_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Rget_obj_type3 object 2 failed");
}
- if(H5Rdestroy(ref2_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT2 failed");
- if(H5Rdestroy(ref1_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_OBJECT2 failed");
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Rget_obj_type3 object 1 failed");
+ }
break;
case H5R_DATASET_REGION2:
H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
/* if (obj_id < 0) - could mean that no reference was written do not throw failure */
- obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT);
- obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT);
- if((obj1_id < 0) || (obj2_id < 0)) {
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
+ if((obj1_id = H5Ropen_object(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 object 1 failed");
}
else {
- H5TOOLS_DEBUG("open_region - H5R_DATASET_REGION2");
- if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- if (h5tools_is_zero(ref1_buf, H5Tget_size(H5T_STD_REF))) {
- H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
- }
- else {
- if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- if (h5tools_is_zero(ref2_buf, H5Tget_size(H5T_STD_REF))) {
- H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
- }
- else {
- nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts);
- }
- if(H5Sclose(region2_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION2 failed");
+ if((obj2_id = H5Ropen_object(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ H5TOOLS_DEBUG("open_region - H5R_DATASET_REGION2");
+ if((region1_id = H5Ropen_region(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if (h5tools_is_zero(ref1_buf, H5Tget_size(H5T_STD_REF))) {
+ H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
}
- else
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed");
- } /* end else to if (h5tools_is_zero(... */
- if(H5Sclose(region1_id) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Sclose H5R_DATASET_REGION2 failed");
- }
- else
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed");
- if (obj1_id >= 0)
- if(H5Dclose(obj1_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
+ else {
+ if((region2_id = H5Ropen_region(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if (h5tools_is_zero(ref2_buf, H5Tget_size(H5T_STD_REF))) {
+ H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
+ }
+ else {
+ nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, &ref_opts);
+ }
+ if(H5Sclose(region2_id) < 0)
+ H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
+ }
+ else
+ H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
+ } /* end else to if (h5tools_is_zero(... */
+ if(H5Sclose(region1_id) < 0)
+ H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
}
- if (obj2_id >= 0)
+ else
+ H5TOOLS_ERROR(H5DIFF_ERR, "H5Ropen_region H5R_DATASET_REGION2 failed");
if(H5Dclose(obj2_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
+ ref_opts.err_stat = H5DIFF_ERR;
H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
}
- if(H5Rdestroy(ref1_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION2 failed");
- if(H5Rdestroy(ref2_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_DATASET_REGION2 failed");
+ }
+ else {
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 object 2 failed");
+ }
+ if(H5Dclose(obj1_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
+ }
}
break;
case H5R_ATTR:
@@ -948,44 +987,42 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
char name2[ATTR_NAME_MAX];
H5TOOLS_DEBUG("ref_type is H5R_ATTR");
- if((obj1_id = H5Ropen_attr(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- parallel_print("Warning: Cannot open referenced attribute: attribute 1\n");
- H5TOOLS_INFO("H5Ropen_attr object 1 failed");
- }
- if((obj2_id = H5Ropen_attr(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
- parallel_print("Warning: Cannot open referenced attribute: attribute 2\n");
- H5TOOLS_INFO("H5Ropen_attr object 2 failed");
- }
-
- if((obj1_id < 0) || (obj2_id < 0)) {
- H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
- }
- else {
- /* get name */
- if(H5Aget_name(obj1_id, (size_t)ATTR_NAME_MAX, name1) < 0)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_name first attribute failed");
- /* get name */
- if(H5Aget_name(obj2_id, (size_t)ATTR_NAME_MAX, name2) < 0)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_name second attribute failed");
-
- H5TOOLS_DEBUG("H5R_ATTR diff_attr_data - name1=%s, name2=%s", name1, name2);
- nfound = diff_attr_data(obj1_id, obj2_id, name1, name2, NULL, NULL, opts);
- }
+ if((obj1_id = H5Ropen_attr(ref1_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((obj2_id = H5Ropen_attr(ref2_buf, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ /* get name */
+ if(H5Aget_name(obj1_id, (size_t)ATTR_NAME_MAX, name1) >= 0) {
+ /* get name */
+ if(H5Aget_name(obj2_id, (size_t)ATTR_NAME_MAX, name2) >= 0) {
+ H5TOOLS_DEBUG("H5R_ATTR diff_attr_data - name1=%s, name2=%s", name1, name2);
+ nfound = diff_attr_data(obj1_id, obj2_id, name1, name2, opts->obj_name[0], opts->obj_name[1], &ref_opts);
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Aget_name second attribute failed");
+ }
+ }
+ else {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Aget_name first attribute failed");
+ }
- if(obj1_id >= 0)
- if(H5Aclose(obj1_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
+ if(H5Aclose(obj2_id) < 0) {
+ ref_opts.err_stat = H5DIFF_ERR;
+ H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
+ }
}
- if(obj2_id >= 0)
- if(H5Aclose(obj2_id) < 0) {
- opts->err_stat = H5DIFF_ERR;
+ else {
+ parallel_print("Warning: Cannot open referenced attribute2\n");
+ H5TOOLS_INFO("H5Ropen_attr object 2 failed");
+ }
+ if(H5Aclose(obj1_id) < 0) {
H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
}
- if(H5Rdestroy(ref2_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_ATTR failed");
- if(H5Rdestroy(ref1_buf) < 0)
- H5TOOLS_ERROR(H5DIFF_ERR, "H5Rdestroy H5R_ATTR failed");
+ }
+ else {
+ parallel_print("Warning: Cannot open referenced attribute1\n");
+ H5TOOLS_INFO("H5Ropen_attr object 1 failed");
+ }
}
break;
case H5R_BADTYPE:
@@ -993,43 +1030,20 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
default:
break;
} /* end switch */
- H5TOOLS_DEBUG("diff_datum H5T_REFERENCE - H5T_STD_REF complete nfound:%d - errstat:%d", nfound, opts->err_stat);
+ if(H5Rdestroy(ref2_buf) < 0)
+ H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1 failed");
+ if(H5Rdestroy(ref1_buf) < 0)
+ H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1 failed");
+ H5TOOLS_DEBUG("H5T_REFERENCE - H5T_STD_REF complete nfound:%d - errstat:%d", nfound, ref_opts.err_stat);
}
/*-------------------------------------------------------------------------
* H5T_STD_REF_DSETREG
* Dataset region reference
*-------------------------------------------------------------------------
*/
- else if (H5Tequal(m_type, H5T_STD_REF_DSETREG)) {
+ else if (H5Tequal(ref_opts.m_tid, H5T_STD_REF_DSETREG)) {
/* if (type_size == H5R_DSET_REG_REF_BUF_SIZE) */
- hid_t region1_id = H5I_INVALID_HID;
- hid_t region2_id = H5I_INVALID_HID;
-
- H5TOOLS_INFO("H5T_STD_REF_DSETREG reference type");
-
- if ((obj1_id = H5Rdereference2(container1_id, H5P_DEFAULT, H5R_DATASET_REGION, _mem1)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rdereference2 object 1 failed");
- }
- if ((obj2_id = H5Rdereference2(container2_id, H5P_DEFAULT, H5R_DATASET_REGION, _mem2)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rdereference2 object 2 failed");
- }
- if ((region1_id = H5Rget_region(container1_id, H5R_DATASET_REGION, _mem1)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_region object 1 failed");
- }
- if ((region2_id = H5Rget_region(container2_id, H5R_DATASET_REGION, _mem2)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_region object 2 failed");
- }
-
- nfound = diff_region(obj1_id, obj2_id, region1_id, region2_id, opts);
-
- H5Oclose(obj1_id);
- H5Oclose(obj2_id);
- H5Sclose(region1_id);
- H5Sclose(region2_id);
+ H5TOOLS_DEBUG("H5T_STD_REF_DSETREG");
}/*dataset reference*/
/*-------------------------------------------------------------------------
@@ -1037,52 +1051,15 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
* Object references. get the type and OID of the referenced object
*-------------------------------------------------------------------------
*/
- else if (H5Tequal(m_type, H5T_STD_REF_OBJ)) {
+ else if (H5Tequal(ref_opts.m_tid, H5T_STD_REF_OBJ)) {
/* if (type_size == H5R_OBJ_REF_BUF_SIZE) */
- H5O_type_t obj1_type;
- H5O_type_t obj2_type;
-
- H5TOOLS_INFO("H5T_STD_REF_OBJ reference type");
-
- if (H5Rget_obj_type2(container1_id, H5R_OBJECT, _mem1, &obj1_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type2 object 1 failed");
- }
- if (H5Rget_obj_type2(container2_id, H5R_OBJECT, _mem2, &obj2_type) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rget_obj_type2 object 2 failed");
- }
-
- /* check object type */
- if (obj1_type != obj2_type) {
- parallel_print("Different object types referenced: <%s> and <%s>", obj1, obj2);
- opts->not_cmp = 1;
- H5TOOLS_GOTO_DONE(opts->err_stat);
- }
-
- if ((obj1_id = H5Rdereference2(container1_id, H5P_DEFAULT, H5R_OBJECT, _mem1)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rdereference2 object 1 failed");
- }
- if ((obj2_id = H5Rdereference2(container2_id, H5P_DEFAULT, H5R_OBJECT, _mem2)) < 0) {
- opts->err_stat = H5DIFF_ERR;
- H5TOOLS_INFO("H5Rdereference2 object 2 failed");
- }
-
- /* compare */
- if (obj1_type == H5O_TYPE_DATASET)
- nfound = diff_datasetid(obj1_id, obj2_id, NULL, NULL, opts);
- else {
- if (opts->m_verbose)
- parallel_print("Warning: Comparison not possible of object types referenced: <%s> and <%s>\n", obj1, obj2);
- opts->not_cmp = 1;
- }
-
- H5Oclose(obj1_id);
- H5Oclose(obj2_id);
+ H5TOOLS_DEBUG("H5T_STD_REF_OBJ");
}/*object reference*/
+ opts->print_header = ref_opts.print_header;
+ opts->not_cmp = ref_opts.not_cmp;
+ opts->err_stat = ref_opts.err_stat | ret_value;
}/*is zero*/
- H5TOOLS_DEBUG("diff_datum H5T_REFERENCE complete");
+ H5TOOLS_DEBUG("H5T_REFERENCE complete");
break;
/*-------------------------------------------------------------------------
@@ -1091,21 +1068,26 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*/
case H5T_VLEN:
{
- hid_t memb_type = H5I_INVALID_HID;
+ diff_opt_t vl_opts;
+
+ H5TOOLS_DEBUG("H5T_VLEN");
- H5TOOLS_DEBUG("diff_datum H5T_VLEN");
+ vl_opts = *opts;
/* get the VL sequences's base datatype for each element */
- memb_type = H5Tget_super(m_type);
- size = H5Tget_size(memb_type);
+ vl_opts.m_tid = H5Tget_super(opts->m_tid);
+ size = H5Tget_size(vl_opts.m_tid);
/* get the number of sequence elements */
- nelmts = ((hvl_t *)((void *)mem1))->len;
+ vl_opts.hs_nelmts = ((hvl_t *)((void *)mem1))->len;
- for (j = 0; j < nelmts; j++)
- nfound += diff_datum(((char *) (((hvl_t *)((void *)mem1))->p)) + j * size, ((char *) (((hvl_t *)((void *)mem2))->p)) + j * size, memb_type, idx, /* Extra (void *) cast to quiet "cast to create alignment" warning - 2019/07/05, QAK */
- rank, dims, acc, pos, opts, obj1, obj2, container1_id, container2_id, ph, members);
+ for (j = 0; j < vl_opts.hs_nelmts; j++)
+ nfound += diff_datum(((char *) (((hvl_t *)((void *)mem1))->p)) + j * size, ((char *) (((hvl_t *)((void *)mem2))->p)) + j * size, elemtno, /* Extra (void *) cast to quiet "cast to create alignment" warning - 2019/07/05, QAK */
+ &vl_opts, container1_id, container2_id, members);
+ opts->print_header = vl_opts.print_header;
+ opts->not_cmp = vl_opts.not_cmp;
+ opts->err_stat = opts->err_stat | vl_opts.err_stat;
- H5Tclose(memb_type);
+ H5Tclose(vl_opts.m_tid);
}
break;
@@ -1114,81 +1096,16 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
case H5T_INTEGER:
- H5TOOLS_DEBUG("diff_datum H5T_INTEGER");
- type_sign = H5Tget_sign(m_type);
+ H5TOOLS_DEBUG("H5T_INTEGER");
+ type_sign = H5Tget_sign(opts->m_tid);
/*-------------------------------------------------------------------------
* H5T_NATIVE_SCHAR
*-------------------------------------------------------------------------
*/
if (type_size == 1 && type_sign != H5T_SGN_NONE) {
- char temp1_char;
- char temp2_char;
-
if(type_size != sizeof(char))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not char size");
- HDmemcpy(&temp1_char, mem1, sizeof(char));
- HDmemcpy(&temp2_char, mem2, sizeof(char));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (ABS(temp1_char-temp2_char) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER(temp1_char, temp2_char);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER(temp1_char, temp2_char);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_char - temp2_char) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
- }
- nfound++;
- }
- }
- else if (temp1_char != temp2_char) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
- }
+ nfound += diff_schar_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_SCHAR*/
/*-------------------------------------------------------------------------
@@ -1196,75 +1113,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 1 && type_sign == H5T_SGN_NONE) {
- unsigned char temp1_uchar;
- unsigned char temp2_uchar;
-
if(type_size != sizeof(unsigned char))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned char size");
-
- HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
- HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (PDIFF(temp1_uchar, temp2_uchar) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
- }
- else if (per > opts->percent && PDIFF(temp1_uchar, temp2_uchar) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
- }
- nfound++;
- }
- }
- else if (temp1_uchar != temp2_uchar) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
- }
+ nfound += diff_uchar_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_UCHAR*/
/*-------------------------------------------------------------------------
@@ -1272,75 +1123,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 2 && type_sign != H5T_SGN_NONE) {
- short temp1_short;
- short temp2_short;
-
if(type_size != sizeof(short))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not short size");
-
- HDmemcpy(&temp1_short, mem1, sizeof(short));
- HDmemcpy(&temp2_short, mem2, sizeof(short));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (ABS(temp1_short - temp2_short) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER(temp1_short, temp2_short);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER(temp1_short, temp2_short);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_short - temp2_short) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
- }
- nfound++;
- }
- }
- else if (temp1_short != temp2_short) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
- }
+ nfound += diff_short_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_SHORT*/
/*-------------------------------------------------------------------------
@@ -1348,75 +1133,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 2 && type_sign == H5T_SGN_NONE) {
- unsigned short temp1_ushort;
- unsigned short temp2_ushort;
-
if(type_size != sizeof(unsigned short))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned short size");
-
- HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
- HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (PDIFF(temp1_ushort, temp2_ushort) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
- }
- else if (per > opts->percent && PDIFF(temp1_ushort, temp2_ushort) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
- }
- nfound++;
- }
- }
- else if (temp1_ushort != temp2_ushort) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
- }
+ nfound += diff_ushort_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_USHORT*/
/*-------------------------------------------------------------------------
@@ -1424,75 +1143,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 4 && type_sign != H5T_SGN_NONE) {
- int temp1_int;
- int temp2_int;
-
if(type_size != sizeof(int))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not int size");
-
- HDmemcpy(&temp1_int, mem1, sizeof(int));
- HDmemcpy(&temp2_int, mem2, sizeof(int));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (ABS(temp1_int-temp2_int) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER(temp1_int, temp2_int);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER(temp1_int, temp2_int);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_int - temp2_int) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
- }
- nfound++;
- }
- }
- else if (temp1_int != temp2_int) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
- }
+ nfound += diff_int_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_INT*/
/*-------------------------------------------------------------------------
@@ -1500,75 +1153,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 4 && type_sign == H5T_SGN_NONE) {
- unsigned int temp1_uint;
- unsigned int temp2_uint;
-
if(type_size != sizeof(unsigned int))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned int size");
-
- HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
- HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (PDIFF(temp1_uint, temp2_uint) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER_UNSIGN(signed int, temp1_uint, temp2_uint);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER_UNSIGN(signed int, temp1_uint, temp2_uint);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
- }
- else if (per > opts->percent && PDIFF(temp1_uint,temp2_uint) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
- }
- nfound++;
- }
- }
- else if (temp1_uint != temp2_uint) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
- }
+ nfound += diff_uint_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_UINT*/
/*-------------------------------------------------------------------------
@@ -1576,75 +1163,9 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 8 && type_sign != H5T_SGN_NONE) {
- long temp1_long;
- long temp2_long;
-
if(type_size != sizeof(long))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long size");
-
- HDmemcpy(&temp1_long, mem1, sizeof(long));
- HDmemcpy(&temp2_long, mem2, sizeof(long));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (ABS(temp1_long-temp2_long) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER(temp1_long, temp2_long);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER(temp1_long, temp2_long);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
- }
- nfound++;
- }
- }
- else if (temp1_long != temp2_long) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
+ nfound += diff_long_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_LONG*/
/*-------------------------------------------------------------------------
@@ -1652,76 +1173,30 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == 8 && type_sign == H5T_SGN_NONE) {
- unsigned long temp1_ulong;
- unsigned long temp2_ulong;
-
if(type_size != sizeof(unsigned long))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned long size");
+ nfound += diff_ulong_element(mem1, mem2, elemtno, opts);
+ } /*H5T_NATIVE_ULONG*/
- HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
- HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
- /* -d and !-p */
- if (opts->d && !opts->p) {
- if (PDIFF(temp1_ulong, temp2_ulong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
- }
- /* !-d and -p */
- else if (!opts->d && opts->p) {
- PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
- }
- nfound++;
- }
- }
- /* -d and -p */
- else if (opts->d && opts->p) {
- PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
+ /*-------------------------------------------------------------------------
+ * H5T_NATIVE_LLONG
+ *-------------------------------------------------------------------------
+ */
+ else if (type_size == 16 && type_sign != H5T_SGN_NONE) {
+ if(type_size != sizeof(long long))
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long long size");
+ nfound += diff_llong_element(mem1, mem2, elemtno, opts);
+ } /*H5T_NATIVE_LLONG*/
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
- else if (per > opts->percent && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
- }
- nfound++;
- }
- }
- else if (temp1_ulong != temp2_ulong) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
- } /*H5T_NATIVE_ULONG*/
+ /*-------------------------------------------------------------------------
+ * H5T_NATIVE_ULLONG
+ *-------------------------------------------------------------------------
+ */
+ else if (type_size == 16 && type_sign == H5T_SGN_NONE) {
+ if(type_size != sizeof(unsigned long long))
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not unsigned long long size");
+ nfound += diff_ullong_element(mem1, mem2, elemtno, opts);
+ } /*H5T_NATIVE_ULLONG*/
break; /* H5T_INTEGER class */
/*-------------------------------------------------------------------------
@@ -1733,319 +1208,21 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
* H5T_NATIVE_FLOAT
*-------------------------------------------------------------------------
*/
- H5TOOLS_DEBUG("diff_datum H5T_FLOAT");
+ H5TOOLS_DEBUG("H5T_FLOAT");
if (type_size == 4) {
- float temp1_float;
- float temp2_float;
- hbool_t isnan1 = FALSE;
- hbool_t isnan2 = FALSE;
-
if(type_size != sizeof(float))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not float size");
-
- HDmemcpy(&temp1_float, mem1, sizeof(float));
- HDmemcpy(&temp2_float, mem2, sizeof(float));
-
- /* logic for detecting NaNs is different with opts -d, -p and no opts */
-
- /*-------------------------------------------------------------------------
- * -d and !-p
- *-------------------------------------------------------------------------
- */
- if (opts->d && !opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if (ABS(temp1_float-temp2_float) > (float) opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * !-d and -p
- *-------------------------------------------------------------------------
- */
- else if (!opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_float, temp2_float);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
- (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * -d and -p
- *-------------------------------------------------------------------------
- */
- else if (opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_float, temp2_float);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
- (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * no -d and -p
- *-------------------------------------------------------------------------
- */
- else if (equal_float(temp1_float, temp2_float, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- } /*H5T_NATIVE_FLOAT*/
-
+ nfound += diff_float_element(mem1, mem2, elemtno, opts);
+ }
/*-------------------------------------------------------------------------
* H5T_NATIVE_DOUBLE
*-------------------------------------------------------------------------
*/
else if (type_size == 8) {
- double temp1_double;
- double temp2_double;
- hbool_t isnan1 = FALSE;
- hbool_t isnan2 = FALSE;
-
if(type_size != sizeof(double))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not double size");
-
- HDmemcpy(&temp1_double, mem1, sizeof(double));
- HDmemcpy(&temp2_double, mem2, sizeof(double));
-
- /* logic for detecting NaNs is different with opts -d, -p and no opts */
- /*-------------------------------------------------------------------------
- * -d and !-p
- *-------------------------------------------------------------------------
- */
- if (opts->d && !opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if (ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- } /* opts->d && !opts->p */
- /*-------------------------------------------------------------------------
- * !-d and -p
- *-------------------------------------------------------------------------
- */
- else if (!opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * -d and -p
- *-------------------------------------------------------------------------
- */
- else if (opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent &&
- ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * no -d and -p
- *-------------------------------------------------------------------------
- */
- else if (equal_double(temp1_double, temp2_double, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- } /*H5T_NATIVE_DOUBLE*/
-
+ nfound += diff_double_element(mem1, mem2, elemtno, opts);
+ }
#if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE
/*-------------------------------------------------------------------------
@@ -2053,157 +1230,10 @@ diff_datum(void *_mem1, void *_mem2, hid_t m_type, hsize_t idx, int rank,
*-------------------------------------------------------------------------
*/
else if (type_size == H5_SIZEOF_LONG_DOUBLE) {
- long double temp1_double;
- long double temp2_double;
- hbool_t isnan1 = FALSE;
- hbool_t isnan2 = FALSE;
-
if(type_size != sizeof(long double)) {
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Type size is not long double size");
}
-
- HDmemcpy(&temp1_double, mem1, sizeof(long double));
- HDmemcpy(&temp2_double, mem2, sizeof(long double));
-
- /* logic for detecting NaNs is different with options -d, -p and no options */
-
- /*-------------------------------------------------------------------------
- * -d and !-p
- *-------------------------------------------------------------------------
- */
- if (opts->d && !opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if (ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- } /* NaN */
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * !-d and -p
- *-------------------------------------------------------------------------
- */
- else if (!opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double,temp2_double);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
- }
- } /* NaN */
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * -d and -p
- *-------------------------------------------------------------------------
- */
- else if (opts->d && opts->p) {
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double,temp2_double);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
- }
- } /* NaN */
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /*-------------------------------------------------------------------------
- * no -d and -p
- *-------------------------------------------------------------------------
- */
- else if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, idx, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
+ nfound += diff_ldouble_element(mem1, mem2, elemtno, opts);
} /*H5T_NATIVE_LDOUBLE*/
#endif /* H5_SIZEOF_LONG_DOUBLE */
@@ -2320,8 +1350,8 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t
npoints1 = H5Sget_select_elem_npoints(region1_id);
npoints2 = H5Sget_select_elem_npoints(region2_id);
} H5E_END_TRY;
- H5TOOLS_DEBUG("diff_region blocks: 1=%ld-2=%ld", nblocks1, nblocks2);
- H5TOOLS_DEBUG("diff_region points: 1=%ld-2=%ld", npoints1, npoints2);
+ H5TOOLS_DEBUG("blocks: 1=%ld-2=%ld", nblocks1, nblocks2);
+ H5TOOLS_DEBUG("points: 1=%ld-2=%ld", npoints1, npoints2);
if (nblocks1 != nblocks2 || npoints1 != npoints2 || ndims1 != ndims2) {
opts->not_cmp = 1;
@@ -2369,7 +1399,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t
}
/* print differences if found */
- if (nfound_b && opts->m_verbose) {
+ if (nfound_b && opts->mode_verbose) {
H5O_info2_t oi1, oi2;
char *obj1_str = NULL, *obj2_str = NULL;
@@ -2437,7 +1467,7 @@ static hsize_t diff_region(hid_t obj1_id, hid_t obj2_id, hid_t region1_id, hid_t
}
}
- if (nfound_p && opts->m_verbose) {
+ if (nfound_p && opts->mode_verbose) {
parallel_print("Region points\n");
for (i = 0; i < npoints1; i++) {
hsize_t pt1, pt2;
@@ -2497,8 +1527,7 @@ done:
*-------------------------------------------------------------------------
*/
-static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u,
- int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph)
+static hsize_t character_compare(char *mem1, char *mem2, hsize_t elemtno, size_t u, diff_opt_t *opts)
{
hsize_t nfound = 0; /* differences found */
char temp1_uchar;
@@ -2506,12 +1535,14 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u,
HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
- H5TOOLS_START_DEBUG(" %d=%d",temp1_uchar,temp2_uchar);
+ H5TOOLS_START_DEBUG(" %d=%d", temp1_uchar, temp2_uchar);
if (temp1_uchar != temp2_uchar) {
if (print_data(opts)) {
- print_char_pos(ph, 0, i, u, acc, pos, rank, dims, obj1, obj2);
- parallel_print(" ");
+ opts->print_percentage = 0;
+ opts->print_dims = 1;
+ print_pos(opts, elemtno, u);
+ parallel_print(" ");
h5diff_print_char(temp1_uchar);
parallel_print(" ");
h5diff_print_char(temp2_uchar);
@@ -2532,1953 +1563,1455 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u,
*-------------------------------------------------------------------------
*/
-static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2,
- hsize_t i, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph)
+static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, hsize_t elemtno, diff_opt_t *opts)
{
hsize_t nfound = 0; /* differences found */
unsigned char temp1_uchar;
unsigned char temp2_uchar;
+ hbool_t both_zero = FALSE;
double per;
- hbool_t both_zero;
HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
+ H5TOOLS_START_DEBUG(" %d=%d", temp1_uchar, temp2_uchar);
/* -d and !-p */
- if (opts->d && !opts->p) {
+ if (opts->delta_bool && !opts->percent_bool) {
if (PDIFF(temp1_uchar,temp2_uchar) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 0, i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
}
nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
+ else if (!opts->delta_bool && opts->percent_bool) {
PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 1, i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
}
nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
+ else if (opts->delta_bool && opts->percent_bool) {
PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
if (per > opts->percent && PDIFF(temp1_uchar,temp2_uchar) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 1, i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
}
nfound++;
}
}
else if (temp1_uchar != temp2_uchar) {
+ opts->print_percentage = 0;
+ print_pos(opts, elemtno, 0);
if (print_data(opts)) {
- print_pos(ph, 0, i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
}
nfound++;
}
+ H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero);
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_float
+ * Function: diff_float_element
*
- * Purpose: diff a H5T_NATIVE_FLOAT type
+ * Purpose: diff a single H5T_NATIVE_FLOAT type
*
* Return: number of differences found
*
*-------------------------------------------------------------------------
*/
-static hsize_t diff_float(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
-
+static hsize_t diff_float_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
float temp1_float;
float temp2_float;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
hbool_t isnan1 = FALSE;
hbool_t isnan2 = FALSE;
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
+
+ HDmemcpy(&temp1_float, mem1, sizeof(float));
+ HDmemcpy(&temp2_float, mem2, sizeof(float));
+
+ /* logic for detecting NaNs is different with opts -d, -p and no opts */
+
/*-------------------------------------------------------------------------
* -d and !-p
*-------------------------------------------------------------------------
*/
+ if (opts->delta_bool && !opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_float);
+ isnan2 = HDisnan(temp2_float);
+ }
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_float, mem1, sizeof(float));
- HDmemcpy(&temp2_float, mem2, sizeof(float));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if ((double) ABS(temp1_float - temp2_float) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ if ((double) ABS(temp1_float - temp2_float) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
}
nfound++;
-
}
- mem1 += sizeof(float);
- mem2 += sizeof(float);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
- * !-d and -p
- *-------------------------------------------------------------------------
- */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_float, mem1, sizeof(float));
- HDmemcpy(&temp2_float, mem2, sizeof(float));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
- /* both not NaN, do the comparison */
- if ((!isnan1 && !isnan2)) {
- PER(temp1_float, temp2_float);
+ * !-d and -p
+ *-------------------------------------------------------------------------
+ */
+ else if (!opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_float);
+ isnan2 = HDisnan(temp2_float);
+ }
+ /* both not NaN, do the comparison */
+ if ((!isnan1 && !isnan2)) {
+ PER(temp1_float, temp2_float);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
- (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
}
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
+ parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
+ (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
}
nfound++;
-
}
- mem1 += sizeof(float);
- mem2 += sizeof(float);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
- * -d and -p
- *-------------------------------------------------------------------------
- */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_float, mem1, sizeof(float));
- HDmemcpy(&temp2_float, mem2, sizeof(float));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_float);
- isnan2 = HDisnan(temp2_float);
- }
+ * -d and -p
+ *-------------------------------------------------------------------------
+ */
+ else if (opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_float);
+ isnan2 = HDisnan(temp2_float);
+ }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_float, temp2_float);
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ PER(temp1_float, temp2_float);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
- }
- else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
- (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT_P_NOTCOMP, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
}
-
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ else if (per > opts->percent && (double) ABS(temp1_float - temp2_float) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
+ parallel_print(F_FORMAT_P, (double) temp1_float, (double) temp2_float,
+ (double) ABS(temp1_float - temp2_float), (double) ABS(1 - temp2_float / temp1_float));
}
nfound++;
-
}
- mem1 += sizeof(float);
- mem2 += sizeof(float);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
+ }
+ nfound++;
+ }
}
-
/*-------------------------------------------------------------------------
- * no -d and -p
- *-------------------------------------------------------------------------
- */
+ * no -d and -p
+ *-------------------------------------------------------------------------
+ */
else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_float, mem1, sizeof(float));
- HDmemcpy(&temp2_float, mem2, sizeof(float));
-
- if (equal_float(temp1_float, temp2_float, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
- }
- nfound++;
+ if (equal_float(temp1_float, temp2_float, opts) == FALSE) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, (double) temp1_float, (double) temp2_float, (double) ABS(temp1_float - temp2_float));
}
-
- mem1 += sizeof(float);
- mem2 += sizeof(float);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ nfound++;
+ }
}
+ H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero);
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_double
+ * Function: diff_double_element
*
- * Purpose: diff a H5T_NATIVE_DOUBLE type
+ * Purpose: diff a single H5T_NATIVE_DOUBLE type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_double(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
-
+static hsize_t diff_double_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
double temp1_double;
double temp2_double;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
hbool_t isnan1 = FALSE;
hbool_t isnan2 = FALSE;
- /*-------------------------------------------------------------------------
- * -d and !-p
- *-------------------------------------------------------------------------
- */
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(double));
- HDmemcpy(&temp2_double, mem2, sizeof(double));
+ HDmemcpy(&temp1_double, mem1, sizeof(double));
+ HDmemcpy(&temp2_double, mem2, sizeof(double));
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
+ /*-------------------------------------------------------------------------
+ * -d and !-p
+ *-------------------------------------------------------------------------
+ */
+ if (opts->delta_bool && !opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if (ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ if (ABS(temp1_double-temp2_double) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
nfound++;
-
}
- mem1 += sizeof(double);
- mem2 += sizeof(double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
- * !-d and -p
- *-------------------------------------------------------------------------
- */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(double));
- HDmemcpy(&temp2_double, mem2, sizeof(double));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
+ * !-d and -p
+ *-------------------------------------------------------------------------
+ */
+ else if (!opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ PER(temp1_double, temp2_double);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double,
- ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ parallel_print(F_FORMAT_P, temp1_double, temp2_double,
+ ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
}
nfound++;
-
}
- mem1 += sizeof(double);
- mem2 += sizeof(double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
- * -d and -p
- *-------------------------------------------------------------------------
- */
- else if (opts->d && opts->p) {
-
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(double));
- HDmemcpy(&temp2_double, mem2, sizeof(double));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
+ * -d and -p
+ *-------------------------------------------------------------------------
+ */
+ else if (opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ PER(temp1_double, temp2_double);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double,
- ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ parallel_print(F_FORMAT_P, temp1_double, temp2_double,
+ ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
}
nfound++;
}
- mem1 += sizeof(double);
- mem2 += sizeof(double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ }
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
- * no -d and -p
- *-------------------------------------------------------------------------
- */
+ * no -d and -p
+ *-------------------------------------------------------------------------
+ */
else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(double));
- HDmemcpy(&temp2_double, mem2, sizeof(double));
-
- if (equal_double(temp1_double, temp2_double, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
+ if (equal_double(temp1_double, temp2_double, opts) == FALSE) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
-
- mem1 += sizeof(double);
- mem2 += sizeof(double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ nfound++;
+ }
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_ldouble
+ * Function: diff_ldouble_element
*
- * Purpose: diff a H5T_NATIVE_LDOUBLE type
+ * Purpose: diff a single H5T_NATIVE_LDOUBLE type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
#if H5_SIZEOF_LONG_DOUBLE !=0
-static hsize_t diff_ldouble(unsigned char *mem1,
- unsigned char *mem2,
- hsize_t nelmts,
- hsize_t hyper_start,
- int rank,
- hsize_t *dims,
- hsize_t *acc,
- hsize_t *pos,
- diff_opt_t *opts,
- const char *obj1,
- const char *obj2,
- int *ph)
-
+static hsize_t diff_ldouble_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
long double temp1_double;
long double temp2_double;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
hbool_t isnan1 = FALSE;
hbool_t isnan2 = FALSE;
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
+
+ HDmemcpy(&temp1_double, mem1, sizeof(long double));
+ HDmemcpy(&temp2_double, mem2, sizeof(long double));
+
+ /* logic for detecting NaNs is different with options -d, -p and no options */
+
/*-------------------------------------------------------------------------
* -d and !-p
*-------------------------------------------------------------------------
*/
+ if (opts->delta_bool && !opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
- if (opts->d && !opts->p) {
- for ( i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(long double));
- HDmemcpy(&temp2_double, mem2, sizeof(long double));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
-
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- if (ABS(temp1_double-temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- }
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ if (ABS(temp1_double-temp2_double) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
nfound++;
-
}
- mem1 += sizeof(long double);
- mem2 += sizeof(long double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ } /* NaN */
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
-
/*-------------------------------------------------------------------------
* !-d and -p
*-------------------------------------------------------------------------
*/
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(long double));
- HDmemcpy(&temp2_double, mem2, sizeof(long double));
+ else if (!opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ PER(temp1_double,temp2_double);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double,
- ABS(temp1_double - temp2_double), ABS(1-temp2_double / temp1_double));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 0, hyper_start+i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
}
nfound++;
}
- mem1 += sizeof(long double);
- mem2 += sizeof(long double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ } /* NaN */
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
* -d and -p
*-------------------------------------------------------------------------
*/
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(long double));
- HDmemcpy(&temp2_double, mem2, sizeof(long double));
-
- /*-------------------------------------------------------------------------
- * detect NaNs
- *-------------------------------------------------------------------------
- */
- if (opts->do_nans) {
- isnan1 = HDisnan(temp1_double);
- isnan2 = HDisnan(temp2_double);
- }
+ else if (opts->delta_bool && opts->percent_bool) {
+ /*-------------------------------------------------------------------------
+ * detect NaNs
+ *-------------------------------------------------------------------------
+ */
+ if (opts->do_nans) {
+ isnan1 = HDisnan(temp1_double);
+ isnan2 = HDisnan(temp2_double);
+ }
- /* both not NaN, do the comparison */
- if (!isnan1 && !isnan2) {
- PER(temp1_double, temp2_double);
+ /* both not NaN, do the comparison */
+ if (!isnan1 && !isnan2) {
+ PER(temp1_double,temp2_double);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- else if (per > opts->percent && ABS(temp1_double - temp2_double) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1-temp2_double / temp1_double));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LD_FORMAT_P_NOTCOMP, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
}
+ nfound++;
}
- /* only one is NaN, assume difference */
- else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ else if (per > opts->percent && ABS(temp1_double-temp2_double) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LD_FORMAT_P, temp1_double, temp2_double, ABS(temp1_double - temp2_double), ABS(1 - temp2_double / temp1_double));
}
nfound++;
}
- mem1 += sizeof(long double);
- mem2 += sizeof(long double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* i */
+ } /* NaN */
+ /* only one is NaN, assume difference */
+ else if ((isnan1 && !isnan2) || (!isnan1 && isnan2)) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
+ }
}
/*-------------------------------------------------------------------------
* no -d and -p
*-------------------------------------------------------------------------
*/
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_double, mem1, sizeof(long double));
- HDmemcpy(&temp2_double, mem2, sizeof(long double));
-
- if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(F_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
- }
- nfound++;
- }
- mem1 += sizeof(long double);
- mem2 += sizeof(long double);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (equal_ldouble(temp1_double, temp2_double, opts) == FALSE) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LD_FORMAT, temp1_double, temp2_double, ABS(temp1_double - temp2_double));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
#endif /* H5_SIZEOF_LONG_DOUBLE */
/*-------------------------------------------------------------------------
- * Function: diff_schar
+ * Function: diff_schar_element
*
- * Purpose: diff a H5T_NATIVE_SCHAR type
+ * Purpose: diff a single H5T_NATIVE_SCHAR type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_schar(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
-
+static hsize_t diff_schar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
char temp1_char;
char temp2_char;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_char, mem1, sizeof(char));
- HDmemcpy(&temp2_char, mem2, sizeof(char));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
+ HDmemcpy(&temp1_char, mem1, sizeof(char));
+ HDmemcpy(&temp2_char, mem2, sizeof(char));
- if (ABS(temp1_char-temp2_char) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (ABS(temp1_char-temp2_char) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
}
- mem1 += sizeof(char);
- mem2 += sizeof(char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_char, mem1, sizeof(char));
- HDmemcpy(&temp2_char, mem2, sizeof(char));
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER(temp1_char, temp2_char);
- PER(temp1_char, temp2_char);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
}
- mem1 += sizeof(char);
- mem2 += sizeof(char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_char, mem1, sizeof(char));
- HDmemcpy(&temp2_char, mem2, sizeof(char));
-
- PER(temp1_char, temp2_char);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER(temp1_char, temp2_char);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
}
- else if (per > opts->percent && ABS(temp1_char-temp2_char) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && ABS(temp1_char - temp2_char) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_char, temp2_char, ABS(temp1_char - temp2_char), per);
}
- mem1 += sizeof(char);
- mem2 += sizeof(char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_char, mem1, sizeof(char));
- HDmemcpy(&temp2_char, mem2, sizeof(char));
-
- if (temp1_char != temp2_char) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
- }
- nfound++;
- }
-
- mem1 += sizeof(char);
- mem2 += sizeof(char);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_char != temp2_char) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_char, temp2_char, ABS(temp1_char - temp2_char));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_uchar
+ * Function: diff_uchar_element
*
- * Purpose: diff a H5T_NATIVE_UCHAR type
+ * Purpose: diff a single H5T_NATIVE_UCHAR type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_uchar(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_uchar_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
unsigned char temp1_uchar;
unsigned char temp2_uchar;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
- HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (PDIFF(temp1_uchar,temp2_uchar) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
+ HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
+ HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (PDIFF(temp1_uchar, temp2_uchar) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
}
- mem1 += sizeof(unsigned char);
- mem2 += sizeof(unsigned char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
- HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
-
- PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
}
- mem1 += sizeof(unsigned char);
- mem2 += sizeof(unsigned char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
- HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
-
- PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed char, temp1_uchar, temp2_uchar);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
}
- else if (per > opts->percent && PDIFF(temp1_uchar,temp2_uchar) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && PDIFF(temp1_uchar, temp2_uchar) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar), per);
}
- mem1 += sizeof(unsigned char);
- mem2 += sizeof(unsigned char);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char));
- HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char));
-
- if (temp1_uchar != temp2_uchar) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
- }
- nfound++;
- }
-
- mem1 += sizeof(unsigned char);
- mem2 += sizeof(unsigned char);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_uchar != temp2_uchar) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_uchar, temp2_uchar, PDIFF(temp1_uchar, temp2_uchar));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_short
+ * Function: diff_short_element
*
* Purpose: diff a H5T_NATIVE_SHORT type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_short(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_short_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
short temp1_short;
short temp2_short;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_short, mem1, sizeof(short));
- HDmemcpy(&temp2_short, mem2, sizeof(short));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (ABS(temp1_short-temp2_short) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
+ HDmemcpy(&temp1_short, mem1, sizeof(short));
+ HDmemcpy(&temp2_short, mem2, sizeof(short));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (ABS(temp1_short - temp2_short) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
}
- mem1 += sizeof(short);
- mem2 += sizeof(short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_short, mem1, sizeof(short));
- HDmemcpy(&temp2_short, mem2, sizeof(short));
-
- PER(temp1_short, temp2_short);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER(temp1_short, temp2_short);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
}
- mem1 += sizeof(short);
- mem2 += sizeof(short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_short, mem1, sizeof(short));
- HDmemcpy(&temp2_short, mem2, sizeof(short));
-
- PER(temp1_short, temp2_short);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER(temp1_short, temp2_short);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
}
- else if (per > opts->percent && ABS(temp1_short-temp2_short) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && ABS(temp1_short - temp2_short) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_short, temp2_short, ABS(temp1_short - temp2_short), per);
}
- mem1 += sizeof(short);
- mem2 += sizeof(short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_short, mem1, sizeof(short));
- HDmemcpy(&temp2_short, mem2, sizeof(short));
-
- if (temp1_short != temp2_short) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
- }
- nfound++;
- }
-
- mem1 += sizeof(short);
- mem2 += sizeof(short);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_short != temp2_short) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_short, temp2_short, ABS(temp1_short - temp2_short));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_ushort
+ * Function: diff_ushort_element
*
- * Purpose: diff a H5T_NATIVE_USHORT type
+ * Purpose: diff a single H5T_NATIVE_USHORT type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_ushort(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
-
+static hsize_t diff_ushort_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
unsigned short temp1_ushort;
unsigned short temp2_ushort;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
- HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (PDIFF(temp1_ushort,temp2_ushort) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
+ HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
+ HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (PDIFF(temp1_ushort, temp2_ushort) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
}
- mem1 += sizeof(unsigned short);
- mem2 += sizeof(unsigned short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
- HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
- PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
}
- mem1 += sizeof(unsigned short);
- mem2 += sizeof(unsigned short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
- HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
-
- PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed short, temp1_ushort, temp2_ushort);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
}
- else if (per > opts->percent && PDIFF(temp1_ushort,temp2_ushort) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && PDIFF(temp1_ushort, temp2_ushort) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort), per);
}
- mem1 += sizeof(unsigned short);
- mem2 += sizeof(unsigned short);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ushort, mem1, sizeof(unsigned short));
- HDmemcpy(&temp2_ushort, mem2, sizeof(unsigned short));
-
- if (temp1_ushort != temp2_ushort) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
- }
- nfound++;
- }
-
- mem1 += sizeof(unsigned short);
- mem2 += sizeof(unsigned short);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_ushort != temp2_ushort) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_ushort, temp2_ushort, PDIFF(temp1_ushort, temp2_ushort));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_int
+ * Function: diff_int_element
*
- * Purpose: diff a H5T_NATIVE_INT type
+ * Purpose: diff a single H5T_NATIVE_INT type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_int(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_int_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
int temp1_int;
int temp2_int;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_int, mem1, sizeof(int));
- HDmemcpy(&temp2_int, mem2, sizeof(int));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (ABS(temp1_int-temp2_int) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
+ HDmemcpy(&temp1_int, mem1, sizeof(int));
+ HDmemcpy(&temp2_int, mem2, sizeof(int));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (ABS(temp1_int-temp2_int) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
}
- mem1 += sizeof(int);
- mem2 += sizeof(int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_int, mem1, sizeof(int));
- HDmemcpy(&temp2_int, mem2, sizeof(int));
-
- PER(temp1_int, temp2_int);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER(temp1_int, temp2_int);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
}
- mem1 += sizeof(int);
- mem2 += sizeof(int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_int, mem1, sizeof(int));
- HDmemcpy(&temp2_int, mem2, sizeof(int));
-
- PER(temp1_int, temp2_int);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER(temp1_int, temp2_int);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P_NOTCOMP, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
}
- else if (per > opts->percent && ABS(temp1_int-temp2_int) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && ABS(temp1_int - temp2_int) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT_P, temp1_int, temp2_int, ABS(temp1_int - temp2_int), per);
}
- mem1 += sizeof(int);
- mem2 += sizeof(int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_int, mem1, sizeof(int));
- HDmemcpy(&temp2_int, mem2, sizeof(int));
-
- if (temp1_int != temp2_int) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
- }
- nfound++;
- }
+ else if (temp1_int != temp2_int) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(I_FORMAT, temp1_int, temp2_int, ABS(temp1_int - temp2_int));
+ }
+ nfound++;
+ }
- mem1 += sizeof(int);
- mem2 += sizeof(int);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
- }
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_uint
+ * Function: diff_uint_element
*
- * Purpose: diff a H5T_NATIVE_UINT type
+ * Purpose: diff a single H5T_NATIVE_UINT type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_uint(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_uint_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
unsigned int temp1_uint;
unsigned int temp2_uint;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
- HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (PDIFF(temp1_uint,temp2_uint) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
+ HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
+ HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (PDIFF(temp1_uint, temp2_uint) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
}
- mem1 += sizeof(unsigned int);
- mem2 += sizeof(unsigned int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
- HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
-
- PER_UNSIGN(signed int, temp1_uint, temp2_uint);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed int, temp1_uint, temp2_uint);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
}
- mem1 += sizeof(unsigned int);
- mem2 += sizeof(unsigned int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
- HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
-
- PER_UNSIGN(signed int, temp1_uint, temp2_uint);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed int, temp1_uint, temp2_uint);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT_P_NOTCOMP, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
}
- else if (per > opts->percent
- && PDIFF(temp1_uint,temp2_uint) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && PDIFF(temp1_uint,temp2_uint) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT_P, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint), per);
}
- mem1 += sizeof(unsigned int);
- mem2 += sizeof(unsigned int);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_uint, mem1, sizeof(unsigned int));
- HDmemcpy(&temp2_uint, mem2, sizeof(unsigned int));
-
- if (temp1_uint != temp2_uint) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(I_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
- }
- nfound++;
- }
-
- mem1 += sizeof(unsigned int);
- mem2 += sizeof(unsigned int);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_uint != temp2_uint) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(UI_FORMAT, temp1_uint, temp2_uint, PDIFF(temp1_uint, temp2_uint));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_long
+ * Function: diff_long_element
*
- * Purpose: diff a H5T_NATIVE_LONG type
+ * Purpose: diff a single H5T_NATIVE_LONG type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_long(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_long_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
long temp1_long;
long temp2_long;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_long, mem1, sizeof(long));
- HDmemcpy(&temp2_long, mem2, sizeof(long));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (ABS(temp1_long-temp2_long) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
- mem1 += sizeof(long);
- mem2 += sizeof(long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ HDmemcpy(&temp1_long, mem1, sizeof(long));
+ HDmemcpy(&temp2_long, mem2, sizeof(long));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (ABS(temp1_long-temp2_long) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
}
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_long, mem1, sizeof(long));
- HDmemcpy(&temp2_long, mem2, sizeof(long));
-
- PER(temp1_long, temp2_long);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER(temp1_long, temp2_long);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
}
- mem1 += sizeof(long);
- mem2 += sizeof(long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_long, mem1, sizeof(long));
- HDmemcpy(&temp2_long, mem2, sizeof(long));
-
- PER(temp1_long, temp2_long);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER(temp1_long, temp2_long);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT_P_NOTCOMP, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
}
- else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && ABS(temp1_long-temp2_long) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT_P, temp1_long, temp2_long, ABS(temp1_long - temp2_long), per);
}
- mem1 += sizeof(long);
- mem2 += sizeof(long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_long, mem1, sizeof(long));
- HDmemcpy(&temp2_long, mem2, sizeof(long));
-
- if (temp1_long != temp2_long) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
- }
- nfound++;
- }
-
- mem1 += sizeof(long);
- mem2 += sizeof(long);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_long != temp2_long) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LI_FORMAT, temp1_long, temp2_long, ABS(temp1_long - temp2_long));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_ulong
+ * Function: diff_ulong_element
*
- * Purpose: diff a H5T_NATIVE_ULONG type
+ * Purpose: diff a single H5T_NATIVE_ULONG type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_ulong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_ulong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
unsigned long temp1_ulong;
unsigned long temp2_ulong;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
- HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (PDIFF(temp1_ulong,temp2_ulong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
- mem1 += sizeof(unsigned long);
- mem2 += sizeof(unsigned long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
+ HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (PDIFF(temp1_ulong, temp2_ulong) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
}
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
- HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
-
- PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
}
- mem1 += sizeof(unsigned long);
- mem2 += sizeof(unsigned long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
- HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
- PER_UNSIGN(signed long, temp1_ulong, temp2_ulong);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT_P_NOTCOMP, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
}
- else if (per > opts->percent
- && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && PDIFF(temp1_ulong,temp2_ulong) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT_P, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong), per);
}
- mem1 += sizeof(unsigned long);
- mem2 += sizeof(unsigned long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
- else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ulong, mem1, sizeof(unsigned long));
- HDmemcpy(&temp2_ulong, mem2, sizeof(unsigned long));
-
- if (temp1_ulong != temp2_ulong) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
- }
- nfound++;
- }
-
- mem1 += sizeof(unsigned long);
- mem2 += sizeof(unsigned long);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ else if (temp1_ulong != temp2_ulong) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULI_FORMAT, temp1_ulong, temp2_ulong, PDIFF(temp1_ulong, temp2_ulong));
+ }
+ nfound++;
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_llong
+ * Function: diff_llong_element
*
- * Purpose: diff a H5T_NATIVE_LLONG type
+ * Purpose: diff a single H5T_NATIVE_LLONG type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_llong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims,
- hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1,
- const char *obj2, int *ph)
+static hsize_t diff_llong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
long long temp1_llong;
long long temp2_llong;
- hsize_t i;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_llong, mem1, sizeof(long long));
- HDmemcpy(&temp2_llong, mem2, sizeof(long long));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (ABS( temp1_llong-temp2_llong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
- }
- nfound++;
+ HDmemcpy(&temp1_llong, mem1, sizeof(long long));
+ HDmemcpy(&temp2_llong, mem2, sizeof(long long));
+
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (ABS( temp1_llong-temp2_llong) > opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
}
- mem1 += sizeof(long long);
- mem2 += sizeof(long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_llong, mem1, sizeof(long long));
- HDmemcpy(&temp2_llong, mem2, sizeof(long long));
-
- PER(temp1_llong, temp2_llong);
+ else if (!opts->delta_bool && opts->percent_bool) {
+ PER(temp1_llong, temp2_llong);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
}
nfound++;
}
else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per);
}
nfound++;
}
- mem1 += sizeof(long long);
- mem2 += sizeof(long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
- }
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_llong, mem1, sizeof(long long));
- HDmemcpy(&temp2_llong, mem2, sizeof(long long));
-
- PER(temp1_llong, temp2_llong);
+ else if (opts->delta_bool && opts->percent_bool) {
+ PER(temp1_llong, temp2_llong);
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
- }
- nfound++;
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LLI_FORMAT_P_NOTCOMP, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
}
- else if (per > opts->percent
- && ABS(temp1_llong-temp2_llong) > opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && ABS(temp1_llong-temp2_llong) > opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LLI_FORMAT_P, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong),per);
}
- mem1 += sizeof(long long);
- mem2 += sizeof(long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_llong, mem1, sizeof(long long));
- HDmemcpy(&temp2_llong, mem2, sizeof(long long));
-
- if (temp1_llong != temp2_llong) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
- }
- nfound++;
+ if (temp1_llong != temp2_llong) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(LLI_FORMAT, temp1_llong, temp2_llong, ABS(temp1_llong - temp2_llong));
}
-
- mem1 += sizeof(long long);
- mem2 += sizeof(long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ nfound++;
+ }
}
+ H5TOOLS_ENDDEBUG(":%d - errstat:%d", nfound, opts->err_stat);
+
return nfound;
}
/*-------------------------------------------------------------------------
- * Function: diff_ullong
+ * Function: diff_ullong_element
*
- * Purpose: diff a H5T_NATIVE_ULLONG type
+ * Purpose: diff a single H5T_NATIVE_ULLONG type
*
* Return: number of differences found
*-------------------------------------------------------------------------
*/
-static hsize_t diff_ullong(unsigned char *mem1, unsigned char *mem2,
- hsize_t nelmts, hsize_t hyper_start, int rank, hsize_t *dims, hsize_t *acc,
- hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph)
-
+static hsize_t diff_ullong_element(unsigned char *mem1, unsigned char *mem2, hsize_t elem_idx, diff_opt_t *opts)
{
hsize_t nfound = 0; /* number of differences found */
unsigned long long temp1_ullong;
unsigned long long temp2_ullong;
- hsize_t i;
float f1, f2;
double per;
- hbool_t both_zero;
+ hbool_t both_zero = FALSE;
- /* -d and !-p */
- if (opts->d && !opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long));
- HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long));
+ H5TOOLS_START_DEBUG("delta_bool:%d - percent_bool:%d", opts->delta_bool, opts->percent_bool);
- if (PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong));
- }
- nfound++;
+ HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long));
+ HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long));
+
+ /* -d and !-p */
+ if (opts->delta_bool && !opts->percent_bool) {
+ if (PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong));
}
- mem1 += sizeof(unsigned long long);
- mem2 += sizeof(unsigned long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* !-d and -p */
- else if (!opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long));
- HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long));
-
- ull2float(temp1_ullong, &f1);
- ull2float(temp2_ullong, &f2);
- PER(f1, f2);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT_P_NOTCOMP,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong));
- }
- nfound++;
+ else if (!opts->delta_bool && opts->percent_bool) {
+ ull2float(temp1_ullong, &f1);
+ ull2float(temp2_ullong, &f2);
+ PER(f1, f2);
+
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT_P_NOTCOMP, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong));
}
- else if (per > opts->percent) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT_P,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong),per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT_P, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong,temp2_ullong), per);
}
- mem1 += sizeof(unsigned long long);
- mem2 += sizeof(unsigned long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
/* -d and -p */
- else if (opts->d && opts->p) {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long));
- HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long));
-
- ull2float(temp1_ullong, &f1);
- ull2float(temp2_ullong, &f2);
- PER(f1, f2);
-
- if (not_comparable && !both_zero) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT_P_NOTCOMP,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong));
- }
- nfound++;
+ else if (opts->delta_bool && opts->percent_bool) {
+ ull2float(temp1_ullong, &f1);
+ ull2float(temp2_ullong, &f2);
+ PER(f1, f2);
+
+ if (not_comparable && !both_zero) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT_P_NOTCOMP, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong));
}
- else if (per > opts->percent
- && PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) {
- if (print_data(opts)) {
- print_pos(ph, 1, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT_P,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong),per);
- }
- nfound++;
+ nfound++;
+ }
+ else if (per > opts->percent && PDIFF(temp1_ullong,temp2_ullong) > (unsigned long long) opts->delta) {
+ opts->print_percentage = 1;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT_P, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong), per);
}
- mem1 += sizeof(unsigned long long);
- mem2 += sizeof(unsigned long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
+ nfound++;
}
}
else {
- for (i = 0; i < nelmts; i++) {
- HDmemcpy(&temp1_ullong, mem1, sizeof(unsigned long long));
- HDmemcpy(&temp2_ullong, mem2, sizeof(unsigned long long));
-
- if (temp1_ullong != temp2_ullong) {
- if (print_data(opts)) {
- print_pos(ph, 0, hyper_start + i, acc, pos, rank, dims, obj1, obj2);
- parallel_print(SPACES);
- parallel_print(ULLI_FORMAT,temp1_ullong,temp2_ullong,PDIFF(temp1_ullong,temp2_ullong));
- }
- nfound++;
+ if (temp1_ullong != temp2_ullong) {
+ opts->print_percentage = 0;
+ print_pos(opts, elem_idx, 0);
+ if (print_data(opts)) {
+ parallel_print(ULLI_FORMAT, temp1_ullong, temp2_ullong, PDIFF(temp1_ullong, temp2_ullong));
}
-
- mem1 += sizeof(unsigned long long);
- mem2 += sizeof(unsigned long long);
- if (opts->n && nfound >= opts->count)
- return nfound;
- } /* nelmts */
+ nfound++;
+ }
}
+ H5TOOLS_ENDDEBUG(": %d zero:%d", nfound, both_zero);
return nfound;
}
@@ -4681,7 +3214,7 @@ static hbool_t equal_float(float value, float expected, diff_opt_t *opts) {
static
int print_data(diff_opt_t *opts)
{
- return ((opts->m_report || opts->m_verbose) && !opts->m_quiet) ? 1 : 0;
+ return ((opts->mode_report || opts->mode_verbose) && !opts->mode_quiet) ? 1 : 0;
}
/*-------------------------------------------------------------------------
@@ -4691,25 +3224,24 @@ int print_data(diff_opt_t *opts)
*-------------------------------------------------------------------------
*/
static
-void print_header(int pp, /* print percentage */
- int rank, hsize_t *dims, const char *obj1, const char *obj2)
+void print_header(diff_opt_t *opts)
{
/* print header */
parallel_print("%-16s", "size:");
- print_dimensions(rank, dims);
+ print_dimensions(opts->rank, opts->dims);
parallel_print("%-11s", "");
- print_dimensions(rank, dims);
+ print_dimensions(opts->rank, opts->dims);
parallel_print("\n");
- if (pp) {
+ if (opts->print_percentage) {
parallel_print("%-15s %-15s %-15s %-15s %-15s\n", "position",
- (obj1 != NULL) ? obj1 : " ", (obj2 != NULL) ? obj2 : " ", "difference", "relative");
+ opts->obj_name[0], opts->obj_name[1], "difference", "relative");
parallel_print(
"------------------------------------------------------------------------\n");
}
else {
parallel_print("%-15s %-15s %-15s %-20s\n", "position",
- (obj1 != NULL) ? obj1 : " ", (obj2 != NULL) ? obj2 : " ", "difference");
+ opts->obj_name[0], opts->obj_name[1], "difference");
parallel_print(
"------------------------------------------------------------\n");
}
@@ -4722,77 +3254,94 @@ void print_header(int pp, /* print percentage */
*-------------------------------------------------------------------------
*/
static
-void print_pos(int *ph, /* print header */
- int pp, /* print percentage */
- hsize_t curr_pos, hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims,
- const char *obj1, const char *obj2)
+void print_pos(diff_opt_t *opts, hsize_t idx, size_t u)
{
- int i;
-
- /* print header */
- if (*ph == 1) {
- *ph = 0;
-
- print_header(pp, rank, dims, obj1, obj2);
- } /* end print header */
-
- for (i = 0; i < rank; i++) {
- pos[i] = curr_pos / acc[i];
- curr_pos -= acc[i] * pos[i];
- }
- HDassert(curr_pos == 0);
+ int i,j;
+
+ H5TOOLS_START_DEBUG(" -- idx:%ld", idx);
+
+ if (print_data(opts)) {
+ /* print header */
+ if (opts->print_header == 1) {
+ opts->print_header = 0;
+
+ print_header(opts);
+ } /* end print header */
+
+ H5TOOLS_DEBUG("rank=%d", opts->rank);
+ if(opts->rank > 0) {
+ hsize_t curr_pos = idx;
+
+ parallel_print("[ ");
+ H5TOOLS_DEBUG("do calc_acc_pos[%ld] nelmts:%d - errstat:%d", i, opts->hs_nelmts, opts->err_stat);
+
+ if (opts->sset[0] != NULL) {
+ /* Subsetting is used - calculate total position */
+ hsize_t elmnt_cnt = 1;
+ hsize_t dim_cnt = 0; /* previous dim size */
+ hsize_t str_cnt = 0; /* previous dim stride */
+ hsize_t curr_idx = idx; /* calculated running position */
+ hsize_t str_idx = 0;
+ hsize_t blk_idx = 0;
+ hsize_t cnt_idx = 0;
+ hsize_t hs_idx = 0;
+ j = opts->rank-1;
+ do {
+ cnt_idx = opts->sset[0]->count.data[j]; /* Count value for current dim */
+ H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - count:%ld", j, curr_pos, curr_idx, cnt_idx);
+ blk_idx = opts->sset[0]->block.data[j]; /* Block value for current dim */
+ H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - block:%ld", j, curr_pos, curr_idx, blk_idx);
+ hs_idx = cnt_idx * blk_idx; /* hyperslab area value for current dim */
+ H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - hs:%ld", j, curr_pos, curr_idx, hs_idx);
+ str_idx = opts->sset[0]->stride.data[j]; /* Stride value for current dim */
+ H5TOOLS_DEBUG("... sset loop:%d with curr_pos:%ld (curr_idx:%ld) - stride:%ld", j, curr_pos, curr_idx, str_idx);
+ elmnt_cnt *= opts->dims[j]; /* Total number of elements in dimension */
+ H5TOOLS_DEBUG("... sset loop:%d with elmnt_cnt:%ld", j, elmnt_cnt);
+ if (str_idx > blk_idx)
+ curr_idx += dim_cnt * (str_idx - blk_idx); /* */
+ else if (curr_idx >= hs_idx)
+ curr_idx += dim_cnt * str_cnt;
+ H5TOOLS_DEBUG("... sset loop:%d with idx:%ld (curr_idx:%ld) - stride:%ld", j, idx, curr_idx, str_idx);
+ dim_cnt = elmnt_cnt; /* */
+ if (str_idx > blk_idx)
+ str_cnt = str_idx - blk_idx; /* */
+ else
+ str_cnt = str_idx; /* */
+ H5TOOLS_DEBUG("... sset loop:%d with dim_cnt:%ld - str_cnt:%ld", j, dim_cnt, str_cnt);
+ j--;
+ } while (curr_idx >= elmnt_cnt && j >= 0);
+ curr_pos = curr_idx; /* New current position */
+ H5TOOLS_DEBUG("pos loop:%d,%d with elmnt_cnt:%ld - curr_pos:%ld", i, j, elmnt_cnt, curr_pos);
+ } /* if (opts->sset[0] != NULL) */
+ /*
+ * Calculate the number of elements represented by a unit change in a
+ * certain index position.
+ */
+ calc_acc_pos((unsigned)opts->rank, curr_pos, opts->acc, opts->pos);
- if (rank > 0) {
- parallel_print("[ ");
- for (i = 0; i < rank; i++) {
- parallel_print(HSIZE_T_FORMAT, (unsigned long long)pos[i]);
- parallel_print(" ");
+ for (i = 0; i < opts->rank; i++) {
+ H5TOOLS_DEBUG("pos loop:%d with opts->pos=%ld opts->sm_pos=%ld", i, opts->pos[i], opts->sm_pos[i]);
+ opts->pos[i] += (unsigned long) opts->sm_pos[i];
+ H5TOOLS_DEBUG("pos loop:%d with opts->pos=%ld", i, opts->pos[i]);
+ parallel_print(HSIZE_T_FORMAT, (unsigned long long)opts->pos[i]);
+ parallel_print(" ");
+ }
+ parallel_print("]");
}
- parallel_print("]");
- }
- else
- parallel_print(" ");
-}
-
-/*-------------------------------------------------------------------------
- * Function: print_char_pos
- *
- * Purpose: print character position in string
- *-------------------------------------------------------------------------
- */
-static
-void print_char_pos(int *ph, /* print header */
- int pp, /* print percentage */
- hsize_t curr_pos, size_t u, hsize_t *acc, hsize_t *pos, int rank, hsize_t *dims,
- const char *obj1, const char *obj2)
-{
- int i;
-
- /* print header */
- if (*ph == 1) {
- *ph = 0;
-
- print_header(pp, rank, dims, obj1, obj2);
- } /* end print header */
-
- for (i = 0; i < rank; i++) {
- pos[i] = curr_pos / acc[i];
- curr_pos -= acc[i] * pos[i];
- }
- HDassert(curr_pos == 0);
-
- parallel_print("[ ");
- if (rank > 0) {
- for (i = 0; i < rank; i++) {
- parallel_print(HSIZE_T_FORMAT, (unsigned long long)pos[i]);
- parallel_print(" ");
+ else {
+ if (opts->print_dims) {
+ parallel_print("[ ");
+ parallel_print("%zu", u);
+ parallel_print("]");
+ opts->print_dims = 0;
+ }
+ else
+ parallel_print(" ");
}
-
+ parallel_print(SPACES);
}
- else
- parallel_print("%zu", u);
- parallel_print("]");
+ H5TOOLS_ENDDEBUG("");
}
/*-------------------------------------------------------------------------
diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c
index 5ad29fc..b7ec2e8 100644
--- a/tools/lib/h5diff_attr.c
+++ b/tools/lib/h5diff_attr.c
@@ -137,7 +137,7 @@ static void table_attr_mark_exist(unsigned *exist, char *name, table_attrs_t *ta
* Parameter:
* table_out [OUT] : return the list
*------------------------------------------------------------------------*/
-static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t ** table_out, diff_opt_t *opts)
+static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t ** table_out, diff_opt_t *opts)
{
table_attrs_t *table_lp = NULL;
H5O_info2_t oinfo1, oinfo2; /* Object info */
@@ -171,8 +171,8 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
* build the list
*/
while(curr1 < oinfo1.num_attrs && curr2 < oinfo2.num_attrs) {
- H5TOOLS_DEBUG("build_match_list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs);
- H5TOOLS_DEBUG("build_match_list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs);
+ H5TOOLS_DEBUG("list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs);
+ H5TOOLS_DEBUG("list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs);
/*------------------
* open attribute1 */
@@ -226,7 +226,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
infile[0] = 1;
infile[1] = 0;
while(curr1 < oinfo1.num_attrs) {
- H5TOOLS_DEBUG("build_match_list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs);
+ H5TOOLS_DEBUG("list_attrs 1: %ld - %ld", curr1, oinfo1.num_attrs);
/*------------------
* open attribute1 */
@@ -235,7 +235,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
/* get name */
if(H5Aget_name(attr1_id, (size_t)ATTR_NAME_MAX, name1) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Aget_name first attribute failed");
- H5TOOLS_DEBUG("build_match_list_attrs #1 name - %s", name1);
+ H5TOOLS_DEBUG("list_attrs 1 name - %s", name1);
table_attr_mark_exist(infile, name1, table_lp);
table_lp->nattrs_only1++;
@@ -250,7 +250,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
infile[0] = 0;
infile[1] = 1;
while(curr2 < oinfo2.num_attrs) {
- H5TOOLS_DEBUG("build_match_list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs);
+ H5TOOLS_DEBUG("list_attrs 2: %ld - %ld", curr2, oinfo2.num_attrs);
/*------------------
* open attribute2 */
if((attr2_id = H5Aopen_by_idx(loc2_id, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)curr2, H5P_DEFAULT, H5P_DEFAULT)) < 0)
@@ -258,7 +258,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
/* get name */
if(H5Aget_name(attr2_id, (size_t)ATTR_NAME_MAX, name2) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Aget_name second attribute failed");
- H5TOOLS_DEBUG("build_match_list_attrs #2 name - %s", name2);
+ H5TOOLS_DEBUG("list_attrs 2 name - %s", name2);
table_attr_mark_exist(infile, name2, table_lp);
table_lp->nattrs_only2++;
@@ -272,7 +272,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
/*------------------------------------------------------
* print the list
*/
- if(opts->m_verbose_level == 2) {
+ if(opts->mode_verbose_level == 2) {
/* if '-v2' is detected */
parallel_print(" obj1 obj2\n");
parallel_print(" --------------------------------------\n");
@@ -284,7 +284,7 @@ static herr_t build_match_list_attrs(hid_t loc1_id, hid_t loc2_id, table_attrs_t
} /* end for */
}
- if(opts->m_verbose_level >= 1)
+ if(opts->mode_verbose_level >= 1)
parallel_print("Attributes status: %d common, %d only in obj1, %d only in obj2\n",
table_lp->nattrs - table_lp->nattrs_only1 - table_lp->nattrs_only2,
table_lp->nattrs_only1, table_lp->nattrs_only2);
@@ -313,7 +313,8 @@ done:
*-------------------------------------------------------------------------
*/
-hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const char *name2, const char *path1, const char *path2, diff_opt_t *opts)
+hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id,
+ const char *name1, const char *name2, const char *path1, const char *path2, diff_opt_t *opts)
{
hid_t space1_id = H5I_INVALID_HID; /* space ID */
hid_t space2_id = H5I_INVALID_HID; /* space ID */
@@ -327,19 +328,15 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const
void *buf2 = NULL; /* data buffer */
hbool_t buf1hasdata = FALSE; /* buffer has data */
hbool_t buf2hasdata = FALSE; /* buffer has data */
- hsize_t nelmts1; /* number of elements in dataset */
int rank1; /* rank of dataset */
int rank2; /* rank of dataset */
hsize_t dims1[H5S_MAX_RANK]; /* dimensions of dataset */
hsize_t dims2[H5S_MAX_RANK]; /* dimensions of dataset */
- char np1[512];
- char np2[512];
hsize_t nfound = 0;
int j;
diff_err_t ret_value = opts->err_stat;
H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat);
-
/* get the datatypes */
if((ftype1_id = H5Aget_type(attr1_id)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_type first attribute failed");
@@ -383,11 +380,30 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const
* check for comparable TYPE and SPACE
*----------------------------------------------------------------------
*/
- H5TOOLS_DEBUG("diff_attr_data check for comparable TYPE and SPACE");
+ H5TOOLS_DEBUG("Check for comparable TYPE and SPACE");
+
+ H5TOOLS_DEBUG("attr_names: %s - %s", name1, name2);
+ if (name1) {
+ j = (int)HDstrlen(name1);
+ H5TOOLS_DEBUG("attr1_name: %s - %d", name1, j);
+ if (j > 0) {
+ opts->obj_name[0] = (char *)HDmalloc((size_t)j + 1);
+ HDstrncpy(opts->obj_name[0], name1, (size_t)j + 1);
+ }
+ }
+ if (name2) {
+ j = (int)HDstrlen(name2);
+ H5TOOLS_DEBUG("attr2_name: %s - %d", name2, j);
+ if (j > 0) {
+ opts->obj_name[1] = (char *)HDmalloc((size_t)j + 1);
+ HDstrncpy(opts->obj_name[1], name2, (size_t)j + 1);
+ }
+ }
+ H5TOOLS_DEBUG("attr_names: %s - %s", opts->obj_name[0], opts->obj_name[1]);
/* pass dims1 and dims2 for maxdims as well since attribute's maxdims
* are always same */
- if(diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, dims1, dims2, name1, name2, opts, 0) == 1) {
+ if(diff_can_type(ftype1_id, ftype2_id, rank1, rank2, dims1, dims2, dims1, dims2, opts, 0) == 1) {
/*-----------------------------------------------------------------
* "upgrade" the smaller memory size
*------------------------------------------------------------------
@@ -395,17 +411,26 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const
if(FAIL == match_up_memsize(ftype1_id, ftype2_id, &mtype1_id, &mtype2_id, &msize1, &msize2))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "match_up_memsize failed");
- H5TOOLS_DEBUG("diff_attr_data read");
+ H5TOOLS_DEBUG("initialize read");
/*---------------------------------------------------------------------
- * read
+ * initialize diff_opt_t structure for dimensions
*----------------------------------------------------------------------
*/
- nelmts1 = 1;
- for(j = 0; j < rank1; j++)
- nelmts1 *= dims1[j];
+ opts->nelmts = 1;
+ for(j = 0; j < rank1; j++) {
+ opts->dims[j] = dims1[j];
+ opts->nelmts *= dims1[j];
+ }
+ opts->rank = rank1;
+ init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx);
- buf1 = (void *)HDcalloc((size_t)(nelmts1), msize1);
- buf2 = (void *)HDcalloc((size_t)(nelmts1), msize2);
+ /*---------------------------------------------------------------------
+ * read
+ *----------------------------------------------------------------------
+ */
+ buf1 = (void *)HDcalloc((size_t)(opts->nelmts), msize1);
+ buf2 = (void *)HDcalloc((size_t)(opts->nelmts), msize2);
+ H5TOOLS_DEBUG("attr buffer size %ld * %ld", opts->nelmts, msize1);
if(buf1 == NULL || buf2 == NULL) {
parallel_print("cannot read into memory\n");
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "buffer allocation failed");
@@ -416,6 +441,7 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const
}
else
buf1hasdata = TRUE;
+ H5TOOLS_DEBUG("attr H5Aread 1");
if(H5Aread(attr2_id, mtype2_id, buf2) < 0) {
parallel_print("Failed reading attribute2 %s\n", name2);
@@ -423,49 +449,84 @@ hsize_t diff_attr_data(hid_t attr1_id, hid_t attr2_id, const char *name1, const
}
else
buf2hasdata = TRUE;
+ H5TOOLS_DEBUG("attr H5Aread 2");
/* format output string */
- HDsnprintf(np1, sizeof(np1), "%s of <%s>", name1, path1);
- HDsnprintf(np2, sizeof(np1), "%s of <%s>", name2, path2);
+ if (opts->obj_name[0] != NULL)
+ HDfree(opts->obj_name[0]);
+ opts->obj_name[0] = NULL;
+ if (opts->obj_name[1] != NULL)
+ HDfree(opts->obj_name[1]);
+ opts->obj_name[1] = NULL;
+
+ H5TOOLS_DEBUG("attr_names: %s - %s : %s - %s", name1, name2, path1, path2);
+ if (name1) {
+ j = (int)HDstrlen(name1) + (int)HDstrlen(path1) + 7;
+ H5TOOLS_DEBUG("attr1_name: %s - %d", name1, j);
+ if (j > 0) {
+ opts->obj_name[0] = (char *)HDcalloc((size_t)j + 1, sizeof(char));
+ HDsnprintf(opts->obj_name[0], j, "%s of <%s>", name1, path1);
+ opts->obj_name[0][j] = '\0';
+ }
+ }
+ if (name2) {
+ j = (int)HDstrlen(name2) + (int)HDstrlen(path2) + 7;
+ H5TOOLS_DEBUG("attr2_name: %s - %d", name2, j);
+ if (j > 0) {
+ opts->obj_name[1] = (char *)HDcalloc((size_t)j + 1, sizeof(char));
+ HDsnprintf(opts->obj_name[1], j, "%s of <%s>", name2, path2);
+ opts->obj_name[1][j] = '\0';
+ }
+ }
/*---------------------------------------------------------------------
* array compare
*----------------------------------------------------------------------
*/
- H5TOOLS_DEBUG("diff_attr_data array compare %s - %s", name1, name1);
+ H5TOOLS_DEBUG("array compare %s - %s", opts->obj_name[0], opts->obj_name[1]);
+
+ opts->hs_nelmts = opts->nelmts;
+ opts->m_tid = mtype1_id;
+
+ /* initialize the current stripmine position; this is necessary to print the array indices */
+ for (j = 0; j < opts->rank; j++)
+ opts->sm_pos[j] = (hsize_t)0;
/* always print name */
/* verbose (-v) and report (-r) mode */
- if(opts->m_verbose || opts->m_report) {
- do_print_attrname("attribute", np1, np2);
+ if(opts->mode_verbose || opts->mode_report) {
+ do_print_attrname("attribute", opts->obj_name[0], opts->obj_name[1]);
- nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1,
- dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id);
+ nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id);
print_found(nfound);
}
/* quiet mode (-q), just count differences */
- else if(opts->m_quiet) {
- nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1,
- dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id);
+ else if(opts->mode_quiet) {
+ nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id);
}
/* the rest (-c, none, ...) */
else {
- nfound = diff_array(buf1, buf2, nelmts1, (hsize_t) 0, rank1,
- dims1, opts, np1, np2, mtype1_id, attr1_id, attr2_id);
+ nfound = diff_array(buf1, buf2, opts, attr1_id, attr2_id);
/* print info if compatible and difference found */
if (nfound) {
- do_print_attrname("attribute", np1, np2);
+ do_print_attrname("attribute", opts->obj_name[0], opts->obj_name[1]);
print_found(nfound);
} /* end if */
} /* end else */
}
- H5TOOLS_DEBUG("diff_attr_data check for comparable TYPE and SPACE complete nfound:%d - errstat:%d", nfound, opts->err_stat);
+ H5TOOLS_DEBUG("check for comparable TYPE and SPACE complete nfound:%d - errstat:%d", nfound, opts->err_stat);
/*----------------------------------------------------------------------
* close
*----------------------------------------------------------------------
*/
+ if (opts->obj_name[0] != NULL)
+ HDfree(opts->obj_name[0]);
+ opts->obj_name[0] = NULL;
+ if (opts->obj_name[1] != NULL)
+ HDfree(opts->obj_name[1]);
+ opts->obj_name[1] = NULL;
/* Free buf1 and buf2, check both VLEN-data VLEN-string to reclaim any
* VLEN memory first */
@@ -543,28 +604,32 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p
unsigned u; /* Local index variable */
hsize_t nfound = 0;
hsize_t nfound_total = 0;
+ diff_opt_t attr_opts;
diff_err_t ret_value = opts->err_stat;
H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat);
+ attr_opts = *opts;
+ attr_opts.obj_name[0] = NULL;
+ attr_opts.obj_name[1] = NULL;
- if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, opts) < 0) {
+ if(build_match_list_attrs(loc1_id, loc2_id, &match_list_attrs, &attr_opts) < 0) {
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "build_match_list_attrs failed");
}
- H5TOOLS_DEBUG("build_match_list_attrs - errstat:%d", opts->err_stat);
+ H5TOOLS_DEBUG("check match_list_attrs - opts->contents:%d - errstat:%d", attr_opts.contents, attr_opts.err_stat);
/* if detect any unique extra attr */
if(match_list_attrs->nattrs_only1 || match_list_attrs->nattrs_only2) {
- H5TOOLS_DEBUG("diff_attr attributes only in one file");
+ H5TOOLS_DEBUG("attributes only in one file");
/* exit will be 1 */
- opts->contents = 0;
+ attr_opts.contents = 0;
}
- H5TOOLS_DEBUG("match_list_attrs info - errstat:%d", opts->err_stat);
+ H5TOOLS_DEBUG("match_list_attrs info - opts->contents:%d", attr_opts.contents);
for(u = 0; u < (unsigned)match_list_attrs->nattrs; u++) {
- H5TOOLS_DEBUG("match_list_attrs loop[%d] - errstat:%d", u, opts->err_stat);
+ H5TOOLS_DEBUG("match_list_attrs loop[%d] - errstat:%d", u, attr_opts.err_stat);
if((match_list_attrs->attrs[u].exist[0]) && (match_list_attrs->attrs[u].exist[1])) {
name1 = name2 = match_list_attrs->attrs[u].name;
- H5TOOLS_DEBUG("diff_attr name - %s", name1);
+ H5TOOLS_DEBUG("name - %s", name1);
/*--------------
* attribute 1 */
@@ -576,8 +641,8 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p
if((attr2_id = H5Aopen(loc2_id, name2, H5P_DEFAULT)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aopen second attribute failed");
- H5TOOLS_DEBUG("diff_attr got attributes");
- nfound = diff_attr_data(attr1_id, attr2_id, name1, name2, path1, path2, opts);
+ H5TOOLS_DEBUG("got attributes");
+ nfound = diff_attr_data(attr1_id, attr2_id, name1, name2, path1, path2, &attr_opts);
if(H5Aclose(attr1_id) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Aget_type first attribute failed");
if(H5Aclose(attr2_id) < 0)
@@ -588,7 +653,10 @@ hsize_t diff_attr(hid_t loc1_id, hid_t loc2_id, const char *path1, const char *p
} /* u */
done:
- opts->err_stat = opts->err_stat | ret_value;
+ opts->print_header = attr_opts.print_header;
+ opts->contents = attr_opts.contents;
+ opts->not_cmp = attr_opts.not_cmp;
+ opts->err_stat = attr_opts.err_stat | ret_value;
H5E_BEGIN_TRY {
table_attrs_free(match_list_attrs);
diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c
index cea20a8..944440e 100644
--- a/tools/lib/h5diff_dset.c
+++ b/tools/lib/h5diff_dset.c
@@ -27,7 +27,8 @@
* Return: Number of differences found
*-------------------------------------------------------------------------
*/
-hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, const char *obj2_name, diff_opt_t *opts)
+hsize_t
+diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, const char *obj2_name, diff_opt_t *opts)
{
int status = -1;
hid_t did1 = H5I_INVALID_HID;
@@ -35,9 +36,15 @@ hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, cons
hid_t dcpl1 = H5I_INVALID_HID;
hid_t dcpl2 = H5I_INVALID_HID;
hsize_t nfound = 0;
+ diff_opt_t diff_opts;
diff_err_t ret_value = opts->err_stat;
H5TOOLS_START_DEBUG(" - errstat:%d", opts->err_stat);
+ diff_opts = *opts;
+ diff_opts.obj_name[0] = NULL;
+ diff_opts.obj_name[1] = NULL;
+
+ H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name);
/*-------------------------------------------------------------------------
* open the handles
*-------------------------------------------------------------------------
@@ -64,20 +71,22 @@ hsize_t diff_dataset(hid_t file1_id, hid_t file2_id, const char *obj1_name, cons
* 2) the internal filters might be turned off
*-------------------------------------------------------------------------
*/
- H5TOOLS_DEBUG("diff_dataset h5tools_canreadf then diff_datasetid");
- if ((status = h5tools_canreadf((opts->m_verbose ? obj1_name : NULL), dcpl1) == 1) &&
- (status = h5tools_canreadf((opts->m_verbose ? obj2_name : NULL), dcpl2) == 1))
- nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, opts);
+ H5TOOLS_DEBUG("h5tools_canreadf then diff_datasetid");
+ if ((status = h5tools_canreadf((opts->mode_verbose ? obj1_name : NULL), dcpl1) == 1) &&
+ (status = h5tools_canreadf((opts->mode_verbose ? obj2_name : NULL), dcpl2) == 1))
+ nfound = diff_datasetid(did1, did2, obj1_name, obj2_name, &diff_opts);
else if (status < 0) {
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "h5tools_canreadf failed");
}
else {
ret_value = 1;
- opts->not_cmp = 1;
+ diff_opts.not_cmp = 1;
}
done:
- opts->err_stat = opts->err_stat | ret_value;
+ opts->print_header = diff_opts.print_header;
+ opts->not_cmp = diff_opts.not_cmp;
+ opts->err_stat = diff_opts.err_stat | ret_value;
/* disable error reporting */
H5E_BEGIN_TRY {
@@ -143,36 +152,31 @@ done:
*
*-------------------------------------------------------------------------
*/
-hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *opts)
+hsize_t
+diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char *obj2_name, diff_opt_t *opts)
{
hid_t sid1 = H5I_INVALID_HID;
hid_t sid2 = H5I_INVALID_HID;
hid_t f_tid1 = H5I_INVALID_HID;
hid_t f_tid2 = H5I_INVALID_HID;
- hid_t dam_tid = H5I_INVALID_HID; /* m_tid for diff_array function */
hid_t m_tid1 = H5I_INVALID_HID;
hid_t m_tid2 = H5I_INVALID_HID;
hid_t dcpl1 = H5I_INVALID_HID;
hid_t dcpl2 = H5I_INVALID_HID;
H5D_layout_t stl1 = -1;
H5D_layout_t stl2 = -1;
- size_t dam_size; /* m_size for diff_array function */
size_t m_size1;
size_t m_size2;
H5T_sign_t sign1;
H5T_sign_t sign2;
int rank1;
int rank2;
- hsize_t danelmts; /* nelmts for diff_array function */
hsize_t nelmts1;
hsize_t nelmts2;
- hsize_t *dadims; /* dims for diff_array function */
hsize_t dims1[H5S_MAX_RANK];
hsize_t dims2[H5S_MAX_RANK];
hsize_t maxdim1[H5S_MAX_RANK];
hsize_t maxdim2[H5S_MAX_RANK];
- const char *name1 = NULL; /* relative names */
- const char *name2 = NULL;
hsize_t storage_size1;
hsize_t storage_size2;
hsize_t nfound = 0; /* number of differences found */
@@ -181,9 +185,10 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
void *buf2 = NULL;
void *sm_buf1 = NULL;
void *sm_buf2 = NULL;
- hid_t sm_space = H5I_INVALID_HID; /*stripmine data space */
+ hid_t sm_space1 = H5I_INVALID_HID; /*stripmine data space */
+ hid_t sm_space2 = H5I_INVALID_HID; /*stripmine data space */
size_t need; /* bytes needed for malloc */
- int i;
+ int i, j;
unsigned int vl_data1 = 0; /*contains VL datatypes */
unsigned int vl_data2 = 0; /*contains VL datatypes */
diff_err_t ret_value = opts->err_stat;
@@ -233,13 +238,15 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
*/
if((dcpl1 = H5Dget_create_plist(did1)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed");
- if((dcpl2 = H5Dget_create_plist(did2)) < 0)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed");
-
if((stl1 = H5Pget_layout(dcpl1)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Pget_layout failed");
+ H5Pclose(dcpl1);
+
+ if((dcpl2 = H5Dget_create_plist(did2)) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dget_create_plist failed");
if((stl2 = H5Pget_layout(dcpl2)) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Pget_layout failed");
+ H5Pclose(dcpl2);
/*-------------------------------------------------------------------------
* check for empty datasets
@@ -253,27 +260,46 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
if(storage_size1 == 0 || storage_size2 == 0) {
if(stl1 == H5D_VIRTUAL || stl2 == H5D_VIRTUAL) {
- if((opts->m_verbose||opts->m_list_not_cmp) && obj1_name && obj2_name)
+ if((opts->mode_verbose||opts->mode_list_not_cmp) && obj1_name && obj2_name)
parallel_print("Warning: <%s> or <%s> is a virtual dataset\n", obj1_name, obj2_name);
}
else {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name)
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && obj1_name && obj2_name)
parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name);
can_compare = 0;
opts->not_cmp = 1;
}
}
+ H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name);
+ opts->obj_name[0] = NULL;
+ if (obj1_name) {
+ j = (int)HDstrlen(obj1_name);
+ H5TOOLS_DEBUG("obj1_name: %s - %d", obj1_name, j);
+ if (j > 0) {
+ opts->obj_name[0] = (char *)HDmalloc((size_t)j + 1);
+ HDstrncpy(opts->obj_name[0], obj1_name, (size_t)j + 1);
+ }
+ }
+
+
+ opts->obj_name[1] = NULL;
+ if (obj2_name) {
+ j = (int)HDstrlen(obj2_name);
+ H5TOOLS_DEBUG("obj2_name: %s - %d", obj2_name, j);
+ if (j > 0) {
+ opts->obj_name[1] = (char *)HDmalloc((size_t)j + 1);
+ HDstrncpy(opts->obj_name[1], obj2_name, (size_t)j + 1);
+ }
+ }
+
/*-------------------------------------------------------------------------
* check for comparable TYPE and SPACE
*-------------------------------------------------------------------------
*/
- if (diff_can_type(f_tid1, f_tid2, rank1, rank2,
- dims1, dims2, maxdim1, maxdim2,
- obj1_name, obj2_name,
- opts, 0) != 1)
+ if (diff_can_type(f_tid1, f_tid2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, opts, 0) != 1)
can_compare = 0;
- H5TOOLS_DEBUG("diff_can_type - errstat:%d", opts->err_stat);
+ H5TOOLS_DEBUG("diff_can_type returned errstat:%d", opts->err_stat);
/*-------------------------------------------------------------------------
* memory type and sizes
@@ -312,7 +338,7 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
sign2 = H5Tget_sign(m_tid2);
if(sign1 != sign2) {
H5TOOLS_DEBUG("sign1 != sign2");
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && obj1_name && obj2_name) {
parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1));
parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2));
}
@@ -360,41 +386,56 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
*------------------------------------------------------------------
*/
H5TOOLS_DEBUG("NOT H5T_ARRAY, upgrade the smaller memory size?");
- if (FAIL == match_up_memsize (f_tid1, f_tid2,
- &m_tid1, &m_tid2,
- &m_size1, &m_size2))
+ if (FAIL == match_up_memsize (f_tid1, f_tid2, &m_tid1, &m_tid2, &m_size1, &m_size2))
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "match_up_memsize failed");
H5TOOLS_DEBUG("m_size: %ld - %ld", m_size1, m_size2);
- dadims = dims1;
- dam_size = m_size1;
- dam_tid = m_tid1;
- danelmts = nelmts1;
+ opts->rank = rank1;
+ for(i = 0; i < rank1; i++)
+ opts->dims[i] = dims1[i];
+ opts->m_size = m_size1;
+ opts->m_tid = m_tid1;
+ opts->nelmts = nelmts1;
need = (size_t)(nelmts1 * m_size1); /* bytes needed */
}
else {
H5TOOLS_DEBUG("Array dims: %d - %d", dims1[0], dims2[0]);
/* Compare the smallest array, but create the largest buffer */
if(m_size1 <= m_size2) {
- dadims = dims1;
- dam_size = m_size1;
- dam_tid = m_tid1;
- danelmts = nelmts1;
+ opts->rank = rank1;
+ for(i = 0; i < rank1; i++)
+ opts->dims[i] = dims1[i];
+ opts->m_size = m_size1;
+ opts->m_tid = m_tid1;
+ opts->nelmts = nelmts1;
need = (size_t)(nelmts2 * m_size2); /* bytes needed */
}
else {
- dadims = dims2;
- dam_size = m_size2;
- dam_tid = m_tid2;
- danelmts = nelmts2;
+ opts->rank = rank2;
+ for(i = 0; i < rank2; i++)
+ opts->dims[i] = dims2[i];
+ opts->m_size = m_size2;
+ opts->m_tid = m_tid2;
+ opts->nelmts = nelmts2;
need = (size_t)(nelmts1 * m_size1); /* bytes needed */
}
}
+ opts->hs_nelmts = opts->nelmts;
+ H5TOOLS_DEBUG("need: %ld", need);
/* print names */
+ H5TOOLS_DEBUG("obj_names: %s - %s", obj1_name, obj2_name);
+
+ if (opts->obj_name[0] != NULL)
+ HDfree(opts->obj_name[0]);
+ opts->obj_name[0] = NULL;
+ if (opts->obj_name[1] != NULL)
+ HDfree(opts->obj_name[1]);
+ opts->obj_name[1] = NULL;
+
if(obj1_name)
- name1 = diff_basename(obj1_name);
+ opts->obj_name[0] = HDstrdup(diff_basename(obj1_name));
if(obj2_name)
- name2 = diff_basename(obj2_name);
- H5TOOLS_DEBUG("obj_names: %s - %s", name1, name2);
+ opts->obj_name[1] = HDstrdup(diff_basename(obj2_name));
+ H5TOOLS_DEBUG("obj_names: %s - %s", opts->obj_name[0], opts->obj_name[1]);
H5TOOLS_DEBUG("read/compare");
@@ -407,7 +448,14 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
buf2 = HDmalloc(need);
} /* end if */
- if(buf1 != NULL && buf2 != NULL) {
+ /* Assume entire data space to be printed */
+ init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx);
+
+ for(i = 0; i < opts->rank; i++) {
+ opts->p_max_idx[i] = opts->dims[i];
+ }
+
+ if(buf1 != NULL && buf2 != NULL && opts->sset[0] == NULL && opts->sset[1] == NULL) {
H5TOOLS_DEBUG("buf1 != NULL && buf2 != NULL");
H5TOOLS_DEBUG("H5Dread did1");
if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0)
@@ -416,10 +464,13 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed");
+ /* initialize the current stripmine position; this is necessary to print the array indices */
+ for (j = 0; j < opts->rank; j++)
+ opts->sm_pos[j] = (hsize_t)0;
+
/* array diff */
- nfound = diff_array(buf1, buf2, danelmts, (hsize_t)0, rank1, dadims,
- opts, name1, name2, dam_tid, did1, did2);
- H5TOOLS_DEBUG("diff_array nfound:%d - errstat:%d", nfound, opts->err_stat);
+ nfound = diff_array(buf1, buf2, opts, did1, did2);
+ H5TOOLS_DEBUG("diff_array ret nfound:%d - errstat:%d", nfound, opts->err_stat);
/* reclaim any VL memory, if necessary */
H5TOOLS_DEBUG("check vl_data1:%d", vl_data1);
@@ -438,111 +489,369 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
}
} /* end if */
else { /* possibly not enough memory, read/compare by hyperslabs */
- size_t p_type_nbytes = dam_size; /*size of memory type */
- hsize_t p_nelmts = danelmts; /*total selected elmts */
- hsize_t elmtno; /*counter */
- int carry; /*counter carry value */
+ hsize_t elmtno; /* counter */
+ int carry; /* counter carry value */
/* stripmine info */
- hsize_t sm_size[H5S_MAX_RANK]; /*stripmine size */
- hsize_t sm_nbytes; /*bytes per stripmine */
- hsize_t sm_nelmts; /*elements per stripmine*/
+ hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
+ hsize_t sm_block[H5S_MAX_RANK]; /* stripmine block size */
+ hsize_t sm_nbytes; /* bytes per stripmine */
+ hsize_t sm_nelmts1; /* elements per stripmine */
+ hsize_t sm_nelmts2; /* elements per stripmine */
+ hssize_t ssm_nelmts; /* elements temp */
/* hyperslab info */
- hsize_t hs_offset[H5S_MAX_RANK]; /*starting offset */
- hsize_t hs_size[H5S_MAX_RANK]; /*size this pass */
- hsize_t hs_nelmts; /*elements in request */
- hsize_t zero[8]; /*vector of zeros */
+ hsize_t hs_offset1[H5S_MAX_RANK]; /* starting offset */
+ hsize_t hs_count1[H5S_MAX_RANK]; /* number of blocks */
+ hsize_t hs_block1[H5S_MAX_RANK]; /* size of blocks */
+ hsize_t hs_stride1[H5S_MAX_RANK]; /* stride */
+ hsize_t hs_size1[H5S_MAX_RANK]; /* size this pass */
+ hsize_t hs_offset2[H5S_MAX_RANK]; /* starting offset */
+ hsize_t hs_count2[H5S_MAX_RANK]; /* number of blocks */
+ hsize_t hs_block2[H5S_MAX_RANK]; /* size of blocks */
+ hsize_t hs_stride2[H5S_MAX_RANK]; /* stride */
+ hsize_t hs_size2[H5S_MAX_RANK]; /* size this pass */
+ hsize_t hs_nelmts1 = 0; /* elements in request */
+ hsize_t hs_nelmts2 = 0; /* elements in request */
+ hsize_t zero[8]; /* vector of zeros */
+ hsize_t low[H5S_MAX_RANK]; /* low bound of hyperslab */
+ hsize_t high[H5S_MAX_RANK]; /* higher bound of hyperslab */
+
+ H5TOOLS_DEBUG("reclaim any VL memory and free unused buffers");
+ if(buf1 != NULL) {
+ /* reclaim any VL memory, if necessary */
+ if(vl_data1)
+ H5Treclaim(m_tid1, sid1, H5P_DEFAULT, buf1);
+ HDfree(buf1);
+ buf1 = NULL;
+ }
+ if(buf2 != NULL) {
+ /* reclaim any VL memory, if necessary */
+ if(vl_data2)
+ H5Treclaim(m_tid2, sid2, H5P_DEFAULT, buf2);
+ HDfree(buf2);
+ buf2 = NULL;
+ }
+
+ /* the stripmine loop */
+ HDmemset(hs_offset1, 0, sizeof hs_offset1);
+ HDmemset(hs_stride1, 0, sizeof hs_stride1);
+ HDmemset(hs_count1, 0, sizeof hs_count1);
+ HDmemset(hs_block1, 0, sizeof hs_block1);
+ HDmemset(hs_size1, 0, sizeof hs_size1);
+ HDmemset(hs_offset2, 0, sizeof hs_offset2);
+ HDmemset(hs_stride2, 0, sizeof hs_stride2);
+ HDmemset(hs_count2, 0, sizeof hs_count2);
+ HDmemset(hs_block2, 0, sizeof hs_block2);
+ HDmemset(hs_size2, 0, sizeof hs_size2);
+ HDmemset(zero, 0, sizeof zero);
+
+ /* if subsetting was requested - initialize the subsetting variables */
+ H5TOOLS_DEBUG("compare by hyperslabs: opts->nelmts=%ld - opts->m_size=%ld", opts->nelmts, opts->m_size);
+ if (opts->sset[0] != NULL) {
+ H5TOOLS_DEBUG("opts->sset[0] != NULL");
+
+ /* Check for valid settings - default if not specified */
+ if(!opts->sset[0]->start.data || !opts->sset[0]->stride.data || !opts->sset[0]->count.data || !opts->sset[0]->block.data) {
+ /* they didn't specify a ``stride'' or ``block''. default to 1 in all
+ * dimensions */
+ if(!opts->sset[0]->start.data) {
+ /* default to (0, 0, ...) for the start coord */
+ opts->sset[0]->start.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t));
+ opts->sset[0]->start.len = (unsigned)rank1;
+ }
+
+ if(!opts->sset[0]->stride.data) {
+ opts->sset[0]->stride.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t));
+ opts->sset[0]->stride.len = (unsigned)rank1;
+ for (i = 0; i < rank1; i++)
+ opts->sset[0]->stride.data[i] = 1;
+ }
+
+ if(!opts->sset[0]->count.data) {
+ opts->sset[0]->count.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t));
+ opts->sset[0]->count.len = (unsigned)rank1;
+ for (i = 0; i < rank1; i++)
+ opts->sset[0]->count.data[i] = 1;
+ }
+
+ if(!opts->sset[0]->block.data) {
+ opts->sset[0]->block.data = (hsize_t *)HDcalloc((size_t)rank1, sizeof(hsize_t));
+ opts->sset[0]->block.len = (unsigned)rank1;
+ for (i = 0; i < rank1; i++)
+ opts->sset[0]->block.data[i] = 1;
+ }
+
+ /*-------------------------------------------------------------------------
+ * check for block overlap
+ *-------------------------------------------------------------------------
+ */
+ for(i = 0; i < rank1; i++) {
+ if(opts->sset[0]->count.data[i] > 1) {
+ if(opts->sset[0]->stride.data[i] < opts->sset[0]->block.data[i]) {
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "wrong subset selection[0]; blocks overlap");
+ } /* end if */
+ } /* end if */
+ } /* end for */
+ }
+
+ /* Reset the total number of elements to the subset from the command */
+ opts->nelmts = 1;
+ for (i = 0; i < rank1; i++) {
+ hs_offset1[i] = opts->sset[0]->start.data[i];
+ hs_stride1[i] = opts->sset[0]->stride.data[i];
+ hs_count1[i] = opts->sset[0]->count.data[i];
+ hs_block1[i] = opts->sset[0]->block.data[i];
+ opts->nelmts *= hs_count1[i] * hs_block1[i];
+ hs_size1[i] = 0;
+ H5TOOLS_DEBUG("[%d]hs_offset1:%ld, hs_stride1:%ld, hs_count1:%ld, hs_block1:%ld", i, hs_offset1[i], hs_stride1[i], hs_count1[i], hs_block1[i]);
+ }
+ }
+ if (opts->sset[1] != NULL) {
+ H5TOOLS_DEBUG("opts->sset[1] != NULL");
+
+ /* Check for valid settings - default if not specified */
+ if(!opts->sset[1]->start.data || !opts->sset[1]->stride.data || !opts->sset[1]->count.data || !opts->sset[1]->block.data) {
+ /* they didn't specify a ``stride'' or ``block''. default to 1 in all
+ * dimensions */
+ if(!opts->sset[1]->start.data) {
+ /* default to (0, 0, ...) for the start coord */
+ opts->sset[1]->start.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t));
+ opts->sset[1]->start.len = (unsigned)rank2;
+ }
+
+ if(!opts->sset[1]->stride.data) {
+ opts->sset[1]->stride.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t));
+ opts->sset[1]->stride.len = (unsigned)rank2;
+ for (i = 0; i < rank2; i++)
+ opts->sset[1]->stride.data[i] = 1;
+ }
+
+ if(!opts->sset[1]->count.data) {
+ opts->sset[1]->count.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t));
+ opts->sset[1]->count.len = (unsigned)rank2;
+ for (i = 0; i < rank2; i++)
+ opts->sset[1]->count.data[i] = 1;
+ }
+
+ if(!opts->sset[1]->block.data) {
+ opts->sset[1]->block.data = (hsize_t *)HDcalloc((size_t)rank2, sizeof(hsize_t));
+ opts->sset[1]->block.len = (unsigned)rank2;
+ for (i = 0; i < rank2; i++)
+ opts->sset[1]->block.data[i] = 1;
+ }
+
+ /*-------------------------------------------------------------------------
+ * check for block overlap
+ *-------------------------------------------------------------------------
+ */
+ for(i = 0; i < rank2; i++) {
+ if(opts->sset[1]->count.data[i] > 1) {
+ if(opts->sset[1]->stride.data[i] < opts->sset[1]->block.data[i]) {
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "wrong subset selection[1]; blocks overlap");
+ } /* end if */
+ } /* end if */
+ } /* end for */
+ }
+
+ for (i = 0; i < rank2; i++) {
+ hs_offset2[i] = opts->sset[1]->start.data[i];
+ hs_stride2[i] = opts->sset[1]->stride.data[i];
+ hs_count2[i] = opts->sset[1]->count.data[i];
+ hs_block2[i] = opts->sset[1]->block.data[i];
+ hs_size2[i] = 0;
+ H5TOOLS_DEBUG("[%d]hs_offset2:%ld, hs_stride2:%ld, hs_count2:%ld, hs_block2:%ld", i, hs_offset2[i], hs_stride2[i], hs_count2[i], hs_block2[i]);
+ }
+ }
/*
* determine the strip mine size and allocate a buffer. The strip mine is
* a hyperslab whose size is manageable.
*/
- sm_nbytes = p_type_nbytes;
-
- for(i = rank1; i > 0; --i) {
- hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
-
- if(size == 0) /* datum size > H5TOOLS_BUFSIZE */
- size = 1;
- sm_size[i - 1] = MIN(dadims[i - 1], size);
- sm_nbytes *= sm_size[i - 1];
- H5TOOLS_DEBUG("sm_nbytes: %ld", sm_nbytes);
- } /* end for */
-
- /* malloc return code should be verified.
- * If fail, need to handle the error.
- * This else branch should be recoded as a separate function.
- * Note that there are many "goto error" within this branch
- * that fails to address freeing other objects created here.
- * E.g., sm_space.
- */
- if((sm_buf1 = HDmalloc((size_t)sm_nbytes)) == NULL)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "HDmalloc failed");
- if((sm_buf2 = HDmalloc((size_t)sm_nbytes)) == NULL)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "HDmalloc failed");
+ sm_nbytes = opts->m_size;
+ if(opts->rank > 0) {
+ for (i = opts->rank; i > 0; --i) {
+ hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
+ if (size == 0) /* datum size > H5TOOLS_BUFSIZE */
+ size = 1;
+ H5TOOLS_DEBUG("opts->dims[%d]: %ld - size: %ld", i - 1, opts->dims[i - 1], size);
+ if (opts->sset[1] != NULL) {
+ sm_size[i - 1] = MIN(hs_block1[i - 1] * hs_count1[i - 1], size);
+ sm_block[i - 1] = MIN(hs_block1[i - 1], sm_size[i - 1]);
+ }
+ else {
+ sm_size[i - 1] = MIN(opts->dims[i - 1], size);
+ sm_block[i - 1] = sm_size[i - 1];
+ }
+ H5TOOLS_DEBUG("sm_size[%d]: %ld - sm_block:%ld", i - 1, sm_size[i - 1], sm_block[i - 1]);
+ sm_nbytes *= sm_size[i - 1];
+ H5TOOLS_DEBUG("sm_nbytes: %ld", sm_nbytes);
+ }
+ }
- sm_nelmts = sm_nbytes / p_type_nbytes;
- sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
+ H5TOOLS_DEBUG("opts->nelmts: %ld", opts->nelmts);
+ for(elmtno = 0; elmtno < opts->nelmts; elmtno += opts->hs_nelmts) {
+ H5TOOLS_DEBUG("elmtno: %ld - hs_nelmts1: %ld", elmtno, hs_nelmts1);
- /* the stripmine loop */
- HDmemset(hs_offset, 0, sizeof hs_offset);
- HDmemset(zero, 0, sizeof zero);
+ if(NULL == (sm_buf1 = (unsigned char *)HDmalloc((size_t) sm_nbytes)))
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Could not allocate buffer for strip-mine");
+ if(NULL == (sm_buf2 = (unsigned char *)HDmalloc((size_t) sm_nbytes)))
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "Could not allocate buffer for strip-mine");
- for(elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
/* calculate the hyperslab size */
- if(rank1 > 0) {
- for(i = 0, hs_nelmts = 1; i < rank1; i++) {
- hs_size[i] = MIN(dadims[i] - hs_offset[i], sm_size[i]);
- hs_nelmts *= hs_size[i];
- } /* end for */
- if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
- H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed");
- if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
+ /* initialize subset */
+ if(opts->rank > 0) {
+ if (opts->sset[0] != NULL) {
+ H5TOOLS_DEBUG("sset1 has data");
+ /* calculate the potential number of elements */
+ for(i = 0; i < rank1; i++) {
+ H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset1: %ld - sm_block: %ld", i, opts->dims[i], hs_offset1[i], sm_block[i]);
+ hs_size1[i] = MIN(opts->dims[i] - hs_offset1[i], sm_block[i]);
+ H5TOOLS_DEBUG("hs_size1[%d]: %ld", i, hs_size1[i]);
+ }
+ if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset1, hs_stride1, hs_count1, hs_size1) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid1 failed");
+ }
+ else {
+ for(i = 0, hs_nelmts1 = 1; i < rank1; i++) {
+ H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset1: %ld - sm_block: %ld", i, opts->dims[i], hs_offset1[i], sm_block[i]);
+ hs_size1[i] = MIN(opts->dims[i] - hs_offset1[i], sm_block[i]);
+ H5TOOLS_DEBUG("hs_size1[%d]: %ld", i, hs_size1[i]);
+ hs_nelmts1 *= hs_size1[i];
+ H5TOOLS_DEBUG("hs_nelmts1:%ld *= hs_size1[%d]: %ld", hs_nelmts1, i, hs_size1[i]);
+ }
+ if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset1, NULL, hs_size1, NULL) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid1 failed");
+ }
+
+ if((ssm_nelmts = H5Sget_select_npoints(sid1)) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_npoints failed");
+ sm_nelmts1 = (hsize_t)ssm_nelmts;
+ H5TOOLS_DEBUG("sm_nelmts1: %ld", sm_nelmts1);
+ hs_nelmts1 = sm_nelmts1;
+
+ if((sm_space1 = H5Screate_simple(1, &sm_nelmts1, NULL)) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Screate_simple failed");
+
+ if(H5Sselect_hyperslab(sm_space1, H5S_SELECT_SET, zero, NULL, &sm_nelmts1, NULL) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed");
- if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0)
+
+ if (opts->sset[1] != NULL) {
+ H5TOOLS_DEBUG("sset2 has data");
+ for(i = 0; i < rank2; i++) {
+ H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset2: %ld - sm_block: %ld", i, opts->dims[i], hs_offset2[i], sm_block[i]);
+ hs_size2[i] = MIN(opts->dims[i] - hs_offset2[i], sm_block[i]);
+ H5TOOLS_DEBUG("hs_size2[%d]: %ld", i, hs_size2[i]);
+ }
+ if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset2, hs_stride2, hs_count2, hs_size2) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid2 failed");
+ }
+ else {
+ for(i = 0, hs_nelmts2 = 1; i < rank2; i++) {
+ H5TOOLS_DEBUG("[%d]opts->dims: %ld - hs_offset2: %ld - sm_block: %ld", i, opts->dims[i], hs_offset2[i], sm_block[i]);
+ hs_size2[i] = MIN(opts->dims[i] - hs_offset2[i], sm_block[i]);
+ H5TOOLS_DEBUG("hs_size2[%d]: %ld", i, hs_size2[i]);
+ hs_nelmts2 *= hs_size2[i];
+ H5TOOLS_DEBUG("hs_nelmts2:%ld *= hs_size2[%d]: %ld", hs_nelmts2, i, hs_size2[i]);
+ }
+ if(H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset2, NULL, hs_size2, NULL) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab sid2 failed");
+ }
+
+ if((ssm_nelmts = H5Sget_select_npoints(sid2)) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_npoints failed");
+ sm_nelmts2 = (hsize_t)ssm_nelmts;
+ H5TOOLS_DEBUG("sm_nelmts2: %ld", sm_nelmts2);
+ hs_nelmts2 = sm_nelmts2;
+
+ if((sm_space2 = H5Screate_simple(1, &sm_nelmts2, NULL)) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Screate_simple failed");
+
+ if(H5Sselect_hyperslab(sm_space2, H5S_SELECT_SET, zero, NULL, &sm_nelmts2, NULL) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sselect_hyperslab failed");
- } /* end if */
+ }
else
- hs_nelmts = 1;
+ hs_nelmts1 = 1;
+ opts->hs_nelmts = hs_nelmts1;
+ H5TOOLS_DEBUG("hs_nelmts: %ld", opts->hs_nelmts);
- if(H5Dread(did1, m_tid1, sm_space, sid1, H5P_DEFAULT, sm_buf1) < 0)
+ /* read the data */
+ if(H5Dread(did1, m_tid1, sm_space1, sid1, H5P_DEFAULT, sm_buf1) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed");
- if(H5Dread(did2, m_tid2, sm_space, sid2, H5P_DEFAULT, sm_buf2) < 0)
+ if(H5Dread(did2, m_tid2, sm_space2, sid2, H5P_DEFAULT, sm_buf2) < 0)
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Dread failed");
+ /* print array indices. get the lower bound of the hyperslab and calculate
+ the element position at the start of hyperslab */
+ if(H5Sget_select_bounds(sid1, low, high) < 0)
+ H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "H5Sget_select_bounds failed");
+ /* initialize the current stripmine position; this is necessary to print the array indices */
+ for (j = 0; j < opts->rank; j++)
+ opts->sm_pos[j] = low[j];
+
+ /* Assume entire data space to be printed */
+ init_acc_pos((unsigned)opts->rank, opts->dims, opts->acc, opts->pos, opts->p_min_idx);
+
/* get array differences. in the case of hyperslab read, increment the number of differences
found in each hyperslab and pass the position at the beginning for printing */
- nfound += diff_array(sm_buf1, sm_buf2, hs_nelmts, elmtno, rank1,
- dadims, opts, name1, name2, dam_tid, did1, did2);
-
- /* reclaim any VL memory, if necessary */
- if(vl_data1)
- H5Treclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1);
- if(vl_data2)
- H5Treclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2);
+ nfound += diff_array(sm_buf1, sm_buf2, opts, did1, did2);
+
+ if(sm_buf1 != NULL) {
+ /* reclaim any VL memory, if necessary */
+ if(vl_data1)
+ H5Treclaim(m_tid1, sm_space1, H5P_DEFAULT, sm_buf1);
+ HDfree(sm_buf1);
+ sm_buf1 = NULL;
+ }
+ if(sm_buf2 != NULL) {
+ /* reclaim any VL memory, if necessary */
+ if(vl_data2)
+ H5Treclaim(m_tid2, sm_space2, H5P_DEFAULT, sm_buf2);
+ HDfree(sm_buf2);
+ sm_buf2 = NULL;
+ }
+
+ H5Sclose(sm_space1);
+ H5Sclose(sm_space2);
/* calculate the next hyperslab offset */
- for(i = rank1, carry = 1; i > 0 && carry; --i) {
- hs_offset[i - 1] += hs_size[i - 1];
- if(hs_offset[i - 1] == dadims[i - 1])
- hs_offset[i - 1] = 0;
+ for(i = opts->rank, carry = 1; i > 0 && carry; --i) {
+ if (opts->sset[0] != NULL) {
+ H5TOOLS_DEBUG("[%d]hs_size1:%ld - hs_block1:%ld - hs_stride1:%ld", i-1, hs_size1[i-1], hs_block1[i - 1], hs_stride1[i - 1]);
+ if(hs_size1[i - 1] >= hs_block1[i - 1]) {
+ hs_offset1[i - 1] += hs_size1[i - 1];
+ }
+ else {
+ hs_offset1[i - 1] += hs_stride1[i - 1];
+ }
+ }
+ else
+ hs_offset1[i - 1] += hs_size1[i - 1];
+ H5TOOLS_DEBUG("[%d]hs_offset1:%ld - opts->dims:%ld", i-1, hs_offset1[i-1], opts->dims[i - 1]);
+ if(hs_offset1[i - 1] >= opts->dims[i - 1])
+ hs_offset1[i - 1] = 0;
else
carry = 0;
- } /* i */
- } /* elmtno */
- if(sm_buf1 != NULL) {
- HDfree(sm_buf1);
- sm_buf1 = NULL;
- }
- if(sm_buf2 != NULL) {
- HDfree(sm_buf2);
- sm_buf2 = NULL;
- }
-
- H5Sclose(sm_space);
+ H5TOOLS_DEBUG("[%d]hs_offset1:%ld", i-1, hs_offset1[i-1]);
+ if (opts->sset[1] != NULL) {
+ H5TOOLS_DEBUG("[%d]hs_size2:%ld - hs_block2:%ld - hs_stride2:%ld", i-1, hs_size2[i-1], hs_block2[i - 1], hs_stride2[i - 1]);
+ if(hs_size2[i - 1] >= hs_block2[i - 1]) {
+ hs_offset2[i - 1] += hs_size2[i - 1];
+ }
+ else {
+ hs_offset2[i - 1] += hs_stride2[i - 1];
+ }
+ }
+ else
+ hs_offset2[i - 1] += hs_size2[i - 1];
+ H5TOOLS_DEBUG("[%d]hs_offset2:%ld - opts->dims:%ld", i-1, hs_offset2[i-1], opts->dims[i - 1]);
+ if(hs_offset2[i - 1] >= opts->dims[i - 1])
+ hs_offset2[i - 1] = 0;
+ H5TOOLS_DEBUG("[%d]hs_offset2:%ld", i-1, hs_offset2[i-1]);
+ }
+ } /* elmtno for loop */
} /* hyperslab read */
- H5TOOLS_DEBUG("can_compare complete");
+ H5TOOLS_DEBUG("can compare complete");
} /*can_compare*/
@@ -550,12 +859,20 @@ hsize_t diff_datasetid(hid_t did1, hid_t did2, const char *obj1_name, const char
* close
*-------------------------------------------------------------------------
*/
- H5TOOLS_DEBUG("reclaim any VL memory - errstat:%d", opts->err_stat);
done:
opts->err_stat = opts->err_stat | ret_value;
+ H5TOOLS_DEBUG("free names - errstat:%d", opts->err_stat);
/* free */
+ if (opts->obj_name[0] != NULL)
+ HDfree(opts->obj_name[0]);
+ opts->obj_name[0] = NULL;
+ if (opts->obj_name[1] != NULL)
+ HDfree(opts->obj_name[1]);
+ opts->obj_name[1] = NULL;
+
+ H5TOOLS_DEBUG("reclaim any VL memory");
if(buf1 != NULL) {
/* reclaim any VL memory, if necessary */
if(vl_data1)
@@ -570,26 +887,31 @@ done:
HDfree(buf2);
buf2 = NULL;
}
+ H5TOOLS_DEBUG("reclaim any stripmine VL memory");
if(sm_buf1 != NULL) {
/* reclaim any VL memory, if necessary */
if(vl_data1)
- H5Treclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1);
+ H5Treclaim(m_tid1, sm_space1, H5P_DEFAULT, sm_buf1);
HDfree(sm_buf1);
sm_buf1 = NULL;
}
if(sm_buf2 != NULL) {
/* reclaim any VL memory, if necessary */
if(vl_data2)
- H5Treclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2);
+ H5Treclaim(m_tid2, sm_space2, H5P_DEFAULT, sm_buf2);
HDfree(sm_buf2);
sm_buf2 = NULL;
}
+ H5TOOLS_DEBUG("close ids");
/* disable error reporting */
H5E_BEGIN_TRY {
H5Sclose(sid1);
H5Sclose(sid2);
- H5Sclose(sm_space);
+ H5Sclose(sm_space1);
+ H5Sclose(sm_space2);
+ H5Pclose(dcpl1);
+ H5Pclose(dcpl2);
H5Tclose(f_tid1);
H5Tclose(f_tid2);
H5Tclose(m_tid1);
@@ -613,10 +935,9 @@ done:
*-------------------------------------------------------------------------
*/
-int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
- hsize_t *dims1, hsize_t *dims2, hsize_t *maxdim1, hsize_t *maxdim2,
- const char *obj1_name, const char *obj2_name,
- diff_opt_t *opts, int is_compound)
+int
+diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2, hsize_t *dims1, hsize_t *dims2,
+ hsize_t *maxdim1, hsize_t *maxdim2, diff_opt_t *opts, int is_compound)
{
H5T_class_t tclass1;
H5T_class_t tclass2;
@@ -635,19 +956,21 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
if((tclass2 = H5Tget_class(f_tid2)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Tget_class second object failed");
+ H5TOOLS_DEBUG("obj_names: %s - %s", opts->obj_name[0], opts->obj_name[1]);
if(tclass1 != tclass2) {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) {
if(is_compound) {
parallel_print("Not comparable: <%s> has a class %s and <%s> has a class %s\n",
- obj1_name, get_class(tclass1),
- obj2_name, get_class(tclass2));
+ opts->obj_name[0], get_class(tclass1),
+ opts->obj_name[1], get_class(tclass2));
}
else {
parallel_print("Not comparable: <%s> is of class %s and <%s> is of class %s\n",
- obj1_name, get_class(tclass1),
- obj2_name, get_class(tclass2));
+ opts->obj_name[0], get_class(tclass1),
+ opts->obj_name[1], get_class(tclass2));
}
}
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
}
@@ -658,10 +981,11 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
*/
switch (tclass1) {
case H5T_TIME:
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) {
parallel_print("Not comparable: <%s> and <%s> are of class %s\n",
- obj1_name, obj2_name, get_class(tclass2));
+ opts->obj_name[0], opts->obj_name[1], get_class(tclass2));
} /* end if */
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
break;
@@ -679,7 +1003,7 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
case H5T_NO_CLASS:
case H5T_NCLASSES:
default:
- H5TOOLS_DEBUG("diff_can_type class - %s", get_class(tclass1));
+ H5TOOLS_DEBUG("class - %s", get_class(tclass1));
break;
} /* end switch */
@@ -687,15 +1011,15 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
* check for equal file datatype; warning only
*-------------------------------------------------------------------------
*/
- if((H5Tequal(f_tid1, f_tid2) == 0) && (opts->m_verbose) && obj1_name && obj2_name) {
+ if((H5Tequal(f_tid1, f_tid2) == 0) && (opts->mode_verbose) && opts->obj_name[0] && opts->obj_name[1]) {
H5T_class_t cl = H5Tget_class(f_tid1);
parallel_print("Warning: different storage datatype\n");
if(cl == H5T_INTEGER || cl == H5T_FLOAT) {
- parallel_print("<%s> has file datatype ", obj1_name);
+ parallel_print("<%s> has file datatype ", opts->obj_name[0]);
print_type(f_tid1);
parallel_print("\n");
- parallel_print("<%s> has file datatype ", obj2_name);
+ parallel_print("<%s> has file datatype ", opts->obj_name[1]);
print_type(f_tid2);
parallel_print("\n");
}
@@ -706,18 +1030,19 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
*-------------------------------------------------------------------------
*/
if(rank1 != rank2) {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
- parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1);
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) {
+ parallel_print("Not comparable: <%s> has rank %d, dimensions ", opts->obj_name[0], rank1);
print_dimensions(rank1, dims1);
parallel_print(", max dimensions ");
print_dimensions(rank1, maxdim1);
parallel_print("\n" );
- parallel_print("and <%s> has rank %d, dimensions ", obj2_name, rank2);
+ parallel_print("and <%s> has rank %d, dimensions ", opts->obj_name[1], rank2);
print_dimensions(rank2, dims2);
parallel_print(", max dimensions ");
print_dimensions(rank2, maxdim2);
parallel_print("\n");
}
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
}
@@ -740,20 +1065,21 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
*-------------------------------------------------------------------------
*/
if(dim_diff == 1) {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
- parallel_print("Not comparable: <%s> has rank %d, dimensions ", obj1_name, rank1);
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) {
+ parallel_print("Not comparable: <%s> has rank %d, dimensions ", opts->obj_name[0], rank1);
print_dimensions(rank1, dims1);
if(maxdim1 && maxdim2) {
parallel_print(", max dimensions ");
print_dimensions(rank1, maxdim1);
parallel_print("\n" );
- parallel_print("and <%s> has rank %d, dimensions ", obj2_name, rank2);
+ parallel_print("and <%s> has rank %d, dimensions ", opts->obj_name[1], rank2);
print_dimensions(rank2, dims2);
parallel_print(", max dimensions ");
print_dimensions(rank2, maxdim2);
parallel_print("\n");
}
}
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
}
@@ -762,13 +1088,13 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
* maximum dimensions; just give a warning
*-------------------------------------------------------------------------
*/
- if(maxdim1 && maxdim2 && maxdim_diff == 1 && obj1_name) {
- if(opts->m_verbose) {
+ if(maxdim1 && maxdim2 && maxdim_diff == 1 && opts->obj_name[0]) {
+ if(opts->mode_verbose) {
parallel_print( "Warning: different maximum dimensions\n");
- parallel_print("<%s> has max dimensions ", obj1_name);
+ parallel_print("<%s> has max dimensions ", opts->obj_name[0]);
print_dimensions(rank1, maxdim1);
parallel_print("\n");
- parallel_print("<%s> has max dimensions ", obj2_name);
+ parallel_print("<%s> has max dimensions ", opts->obj_name[1]);
print_dimensions(rank2, maxdim2);
parallel_print("\n");
}
@@ -777,16 +1103,17 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
if(tclass1 == H5T_STRING) {
htri_t vstrtype1 = -1;
htri_t vstrtype2 = -1;
- H5TOOLS_DEBUG("diff_can_type end - H5T_STRING");
+ H5TOOLS_DEBUG(" - H5T_STRING");
vstrtype1 = H5Tis_variable_str(f_tid1);
vstrtype2 = H5Tis_variable_str(f_tid2);
/* no compare if either one but not both are variable string type */
if (vstrtype1 != vstrtype2) {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name)
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1])
parallel_print("Not comparable: <%s> or <%s> is of mixed string type\n",
- obj1_name, obj2_name);
+ opts->obj_name[0], opts->obj_name[1]);
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
}
@@ -798,17 +1125,18 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
int j;
hid_t memb_type1 = H5I_INVALID_HID;
hid_t memb_type2 = H5I_INVALID_HID;
- H5TOOLS_DEBUG("diff_can_type end - H5T_COMPOUND");
+ H5TOOLS_DEBUG(" - H5T_COMPOUND");
nmembs1 = H5Tget_nmembers(f_tid1);
nmembs2 = H5Tget_nmembers(f_tid2);
if(nmembs1 != nmembs2) {
- if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) {
- parallel_print("Not comparable: <%s> has %d members ", obj1_name, nmembs1);
- parallel_print("<%s> has %d members ", obj2_name, nmembs2);
+ if((opts->mode_verbose || opts->mode_list_not_cmp) && opts->obj_name[0] && opts->obj_name[1]) {
+ parallel_print("Not comparable: <%s> has %d members ", opts->obj_name[0], nmembs1);
+ parallel_print("<%s> has %d members ", opts->obj_name[1], nmembs2);
parallel_print("\n");
}
+
opts->not_cmp = 1;
H5TOOLS_GOTO_DONE(0);
}
@@ -817,9 +1145,7 @@ int diff_can_type(hid_t f_tid1, hid_t f_tid2, int rank1, int rank2,
memb_type1 = H5Tget_member_type(f_tid1, (unsigned)j);
memb_type2 = H5Tget_member_type(f_tid2, (unsigned)j);
- if (diff_can_type(memb_type1, memb_type2, rank1, rank2,
- dims1, dims2, maxdim1, maxdim2, obj1_name, obj2_name,
- opts, 1) != 1) {
+ if (diff_can_type(memb_type1, memb_type2, rank1, rank2, dims1, dims2, maxdim1, maxdim2, opts, 1) != 1) {
opts->not_cmp = 1;
H5Tclose(memb_type1);
H5Tclose(memb_type2);
@@ -838,19 +1164,17 @@ done:
}
+#if defined (H5DIFF_DEBUG_UNUSED)
+/* this function is not currently used, but could be useful */
/*-------------------------------------------------------------------------
* Function: print_sizes
*
* Purpose: Print datatype sizes
*-------------------------------------------------------------------------
*/
-#if defined (H5DIFF_DEBUG)
-void print_sizes( const char *obj1,
- const char *obj2,
- hid_t f_tid1,
- hid_t f_tid2,
- hid_t m_tid1,
- hid_t m_tid2 )
+void print_sizes( const char *obj1, const char *obj2, hid_t f_tid1, hid_t f_tid2, hid_t m_tid1, hid_t m_tid2);
+
+void print_sizes( const char *obj1, const char *obj2, hid_t f_tid1, hid_t f_tid2, hid_t m_tid1, hid_t m_tid2)
{
size_t f_size1, f_size2; /* size of type in file */
size_t m_size1, m_size2; /* size of type in memory */
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index cc51e2c..55c69a7 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -29,28 +29,37 @@ int H5tools_INDENT_g = 0;
/* global variables */
+H5E_auto2_t lib_func;
+H5E_auto2_t tools_func;
+void *lib_edata;
+void *tools_edata;
+
hid_t H5tools_ERR_STACK_g = H5I_INVALID_HID;
hid_t H5tools_ERR_CLS_g = H5I_INVALID_HID;
hid_t H5E_tools_g = H5I_INVALID_HID;
hid_t H5E_tools_min_id_g = H5I_INVALID_HID;
hid_t H5E_tools_min_info_id_g = H5I_INVALID_HID;
hid_t H5E_tools_min_dbg_id_g = H5I_INVALID_HID;
-int compound_data;
+
FILE *rawattrstream = NULL; /* should initialize to stdout but gcc moans about it */
FILE *rawdatastream = NULL; /* should initialize to stdout but gcc moans about it */
FILE *rawinstream = NULL; /* should initialize to stdin but gcc moans about it */
FILE *rawoutstream = NULL; /* should initialize to stdout but gcc moans about it */
FILE *rawerrorstream = NULL; /* should initialize to stderr but gcc moans about it */
+
int bin_output; /* binary output */
int bin_form = 0; /* binary form, default NATIVE */
int region_output; /* region output */
int oid_output; /* oid output */
int data_output; /* data output */
int attr_data_output; /* attribute data output */
+int compound_data;
+
unsigned packed_bits_num; /* number of packed bits to display */
unsigned packed_data_offset; /* offset of packed bits to display */
unsigned packed_data_length; /* length of packed bits to display */
unsigned long long packed_data_mask; /* mask in which packed bits to display */
+
int enable_error_stack = 0; /* re-enable error stack; disable=0 enable=1 */
/* sort parameters */
@@ -103,6 +112,10 @@ const char *drivernames[] = {
void
h5tools_init(void)
{
+ /* Disable error reporting */
+ H5Eget_auto2(H5E_DEFAULT, &lib_func, &lib_edata);
+ H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+
if (!h5tools_init_g) {
H5TOOLS_INIT_ERROR();
@@ -121,6 +134,29 @@ h5tools_init(void)
h5tools_init_g++;
}
+
+ /* Disable tools error reporting */
+ H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5tools_error_report
+ *
+ * Purpose: Enable error stack reporting after command line is parsed.
+ *
+ * Return: None
+ *-------------------------------------------------------------------------
+ */
+void
+h5tools_error_report(void)
+{
+ if (h5tools_init_g) {
+ if (enable_error_stack > 0) {
+ H5Eset_auto2(H5E_DEFAULT, lib_func, lib_edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
+ }
+ }
}
/*-------------------------------------------------------------------------
@@ -137,16 +173,11 @@ h5tools_init(void)
void
h5tools_close(void)
{
- H5E_auto2_t tools_func;
- void *tools_edata;
-
if (h5tools_init_g) {
/* special case where only data is output to stdout */
if ((rawoutstream == NULL) && rawdatastream && (rawdatastream == stdout))
HDfprintf(rawdatastream, "\n");
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
-
if (tools_func)
H5Eprint2(H5tools_ERR_STACK_g, rawerrorstream);
@@ -184,6 +215,10 @@ h5tools_close(void)
/* Clean up the reference path table, if it's been used */
term_ref_path_table();
+ /* Restore error stacks from init */
+ H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
+ H5Eset_auto2(H5E_DEFAULT, lib_func, lib_edata);
+
H5TOOLS_CLOSE_ERROR();
/* Shut down the library */
@@ -1090,8 +1125,8 @@ done:
*-------------------------------------------------------------------------
*/
void
-h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hsize_t elmtno, int secnum)
+h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hsize_t elmtno, int secnum)
{
h5tools_str_t prefix;
h5tools_str_t str; /*temporary for indentation */
@@ -1119,7 +1154,7 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info,
H5TOOLS_DEBUG("after CR elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims);
/* Calculate new prefix */
- h5tools_str_prefix(&prefix, info, elmtno, ctx->ndims, ctx);
+ h5tools_str_prefix(&prefix, info, elmtno, ctx);
H5TOOLS_DEBUG("prefix=%s - str=%s", prefix.s, str.s);
/* Write new prefix to output */
@@ -1186,8 +1221,8 @@ h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info,
*-------------------------------------------------------------------------
*/
void
-h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum)
+h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hsize_t elmtno, hsize_t *ptdata, int secnum)
{
h5tools_str_t prefix;
h5tools_str_t str; /*temporary for indentation */
@@ -1211,7 +1246,7 @@ h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info,
}
/* Calculate new prefix */
- h5tools_str_region_prefix(&prefix, info, elmtno, ptdata, ctx->ndims, ctx->p_max_idx, ctx);
+ h5tools_str_region_prefix(&prefix, info, elmtno, ptdata, ctx);
/* Write new prefix to output */
if (ctx->indent_level > 0)
@@ -1284,9 +1319,8 @@ h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info,
*-------------------------------------------------------------------------
*/
hbool_t
-h5tools_render_element(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos,
- size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter)
+h5tools_render_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter)
{
hbool_t dimension_break = TRUE;
char *s = NULL;
@@ -1455,9 +1489,8 @@ h5tools_render_element(FILE *stream, const h5tool_format_t *info,
*-------------------------------------------------------------------------
*/
hbool_t
-h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos,
- size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter)
+h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter)
{
hbool_t dimension_break = TRUE;
char *s = NULL;
@@ -1474,8 +1507,10 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
* If the element would split on multiple lines if printed at our
* current location...
*/
- if (info->line_multi_new == 1 && (ctx->cur_column + h5tools_count_ncols(s) +
- HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols) {
+ if (info->line_multi_new == 1 &&
+ (ctx->cur_column + h5tools_count_ncols(s) +
+ HDstrlen(OPT(info->elmt_suf2, " ")) +
+ HDstrlen(OPT(info->line_suf, ""))) > ncols) {
if (ctx->prev_multiline) {
/*
* ... and the previous element also occupied more than one
@@ -1484,7 +1519,8 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
ctx->need_prefix = TRUE;
}
else if ((ctx->prev_prefix_len + h5tools_count_ncols(s) +
- HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) <= ncols) {
+ HDstrlen(OPT(info->elmt_suf2, " ")) +
+ HDstrlen(OPT(info->line_suf, ""))) <= ncols) {
/*
* ...but *could* fit on one line otherwise, then we
* should end the current line and start this element on its
@@ -1515,7 +1551,9 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
* beginning of the line.
*/
if (info->line_multi_new == 1 && ctx->prev_multiline &&
- (ctx->cur_column + h5tools_count_ncols(s) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols)
+ (ctx->cur_column + h5tools_count_ncols(s) +
+ HDstrlen(OPT(info->elmt_suf2, " ")) +
+ HDstrlen(OPT(info->line_suf, ""))) > ncols)
ctx->need_prefix = TRUE;
/*
@@ -1543,7 +1581,9 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
* this check to happen for the first line
*/
if ((!info->skip_first || local_elmt_counter) &&
- (ctx->cur_column + HDstrlen(section) + HDstrlen(OPT(info->elmt_suf2, " ")) + HDstrlen(OPT(info->line_suf, ""))) > ncols)
+ (ctx->cur_column + HDstrlen(section) +
+ HDstrlen(OPT(info->elmt_suf2, " ")) +
+ HDstrlen(OPT(info->line_suf, ""))) > ncols)
ctx->need_prefix = 1;
/*
@@ -1589,27 +1629,65 @@ h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
*-------------------------------------------------------------------------
*/
void
-init_acc_pos(h5tools_context_t *ctx, hsize_t *dims)
+init_acc_pos(unsigned ndims, hsize_t *dims, hsize_t *acc, hsize_t *pos, hsize_t *p_min_idx)
{
int i;
unsigned j;
H5TOOLS_START_DEBUG("");
- if(ctx->ndims > 0) {
- ctx->acc[ctx->ndims - 1] = 1;
- for (i = ((int)ctx->ndims - 2); i >= 0; i--) {
- ctx->acc[i] = ctx->acc[i + 1] * dims[i + 1];
- H5TOOLS_DEBUG("ctx->acc[%d]=%ld", i, ctx->acc[i]);
+ for (i = 0; (unsigned)i < ndims; i++)
+ p_min_idx[i] = 0;
+
+ if(ndims > 0) {
+ acc[ndims - 1] = 1;
+ for (i = ((int)ndims - 2); i >= 0; i--) {
+ acc[i] = acc[i + 1] * dims[i + 1];
+ H5TOOLS_DEBUG("acc[%d]=%ld", i, acc[i]);
}
- for (j = 0; j < ctx->ndims; j++)
- ctx->pos[j] = 0;
+ for (j = 0; j < ndims; j++)
+ pos[j] = 0;
}
H5TOOLS_ENDDEBUG("");
}
/*-------------------------------------------------------------------------
+ * Function: calc_acc_pos
+ *
+ * Purpose: Calculate the number of elements represented by a unit change
+ * in a certain index position.
+ *
+ * Return: void
+ *-------------------------------------------------------------------------
+ */
+hsize_t
+calc_acc_pos(unsigned ndims, hsize_t elmtno, hsize_t *acc, hsize_t *pos)
+{
+ int i;
+ hsize_t curr_pos = elmtno;
+
+ H5TOOLS_START_DEBUG("");
+
+ if(ndims > 0) {
+ for(i = 0; i < (int)ndims; i++) {
+ if(curr_pos > 0) {
+ H5TOOLS_DEBUG("curr_pos=%ld - ctx->acc[%d]=%ld", curr_pos, i, acc[i]);
+ pos[i] = curr_pos / acc[i];
+ curr_pos -= acc[i] * pos[i];
+ }
+ else
+ pos[i] = 0;
+ H5TOOLS_DEBUG("curr_pos=%ld - pos[%d]=%ld - acc[%d]=%ld", curr_pos, i, pos[i], i, acc[i]);
+ }
+ }
+
+ H5TOOLS_ENDDEBUG("");
+
+ return curr_pos;
+}
+
+/*-------------------------------------------------------------------------
* Function: render_bin_output
*
* Purpose: Write one element of memory buffer to a binary file stream
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 2b6fffb..152ec1a 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -570,9 +570,6 @@ typedef struct h5tools_vfd_info_t {
const char *name;
} h5tools_vfd_info_t;
-H5TOOLS_DLLVAR const char *volnames[];
-H5TOOLS_DLLVAR const char *drivernames[];
-
/* This enum should match the entries in the above 'volnames'
* since they are indices into the 'volnames' array. */
typedef enum {
@@ -603,14 +600,22 @@ typedef enum {
#include "h5tools_str.h"
-H5TOOLS_DLLVAR h5tool_format_t h5tools_dataformat;
-H5TOOLS_DLLVAR const h5tools_dump_header_t h5tools_standardformat;
-H5TOOLS_DLLVAR const h5tools_dump_header_t* h5tools_dump_header_format;
#ifdef __cplusplus
extern "C" {
#endif
+H5TOOLS_DLLVAR const char *volnames[];
+H5TOOLS_DLLVAR const char *drivernames[];
+
+H5TOOLS_DLLVAR h5tool_format_t h5tools_dataformat;
+H5TOOLS_DLLVAR const h5tools_dump_header_t h5tools_standardformat;
+H5TOOLS_DLLVAR const h5tools_dump_header_t* h5tools_dump_header_format;
+H5TOOLS_DLLVAR H5E_auto2_t lib_func;
+H5TOOLS_DLLVAR H5E_auto2_t tools_func;
+H5TOOLS_DLLVAR void *lib_edata;
+H5TOOLS_DLLVAR void *tools_edata;
+
H5TOOLS_DLLVAR unsigned packed_bits_num; /* number of packed bits to display */
H5TOOLS_DLLVAR unsigned packed_data_offset; /* offset of packed bits to display */
H5TOOLS_DLLVAR unsigned packed_data_length; /* length of packed bits to display */
@@ -644,14 +649,17 @@ H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 e
/* Definitions of useful routines */
H5TOOLS_DLL void h5tools_init(void);
H5TOOLS_DLL void h5tools_close(void);
+
+H5TOOLS_DLL void h5tools_error_report(void);
H5TOOLS_DLL int h5tools_set_data_output_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_attr_output_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_input_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_output_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_error_file(const char *fname, int is_bin);
-H5TOOLS_DLL hid_t h5tools_get_fapl(hid_t prev_fapl_id, h5tools_vol_info_t *vol_info,
- h5tools_vfd_info_t *vfd_info);
-H5TOOLS_DLL herr_t h5tools_get_vfd_name(hid_t fapl_id, char *drivername, size_t drivername_size);
+
+H5TOOLS_DLL hid_t h5tools_get_fapl(hid_t prev_fapl_id, h5tools_vol_info_t *vol_info, h5tools_vfd_info_t *vfd_info);
+H5TOOLS_DLL herr_t h5tools_get_vfd_name(hid_t fapl_id,
+ char *drivername, size_t drivername_size);
H5TOOLS_DLL hid_t h5tools_fopen(const char *fname, unsigned flags, hid_t fapl,
hbool_t use_specific_driver, char *drivername, size_t drivername_size);
H5TOOLS_DLL hid_t h5tools_get_little_endian_type(hid_t type);
@@ -659,36 +667,29 @@ H5TOOLS_DLL hid_t h5tools_get_big_endian_type(hid_t type);
H5TOOLS_DLL htri_t h5tools_detect_vlen(hid_t tid);
H5TOOLS_DLL htri_t h5tools_detect_vlen_str(hid_t tid);
H5TOOLS_DLL hbool_t h5tools_is_obj_same(hid_t loc_id1, const char *name1, hid_t loc_id2, const char *name2);
-H5TOOLS_DLL void init_acc_pos(h5tools_context_t *ctx, hsize_t *dims);
+H5TOOLS_DLL void init_acc_pos(unsigned ndims, hsize_t *dims, hsize_t *acc, hsize_t *pos, hsize_t *p_min_idx);
+H5TOOLS_DLL hsize_t calc_acc_pos(unsigned ndims, hsize_t elemtno, hsize_t *acc, hsize_t *pos);
H5TOOLS_DLL hbool_t h5tools_is_zero(const void *_mem, size_t size);
H5TOOLS_DLL int h5tools_canreadf(const char* name, hid_t dcpl_id);
H5TOOLS_DLL int h5tools_can_encode(H5Z_filter_t filtn);
-H5TOOLS_DLL void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hsize_t elmtno, int secnum);
-H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum);
+H5TOOLS_DLL void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hsize_t elmtno, int secnum);
+H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hsize_t elmtno, hsize_t *ptdata, int secnum);
H5TOOLS_DLL int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t nelmts);
-H5TOOLS_DLL int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream,
- hid_t container, unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata);
-H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
- FILE *stream, hid_t container);
-H5TOOLS_DLL int render_bin_output_region_data_points(hid_t region_space, hid_t region_id,
- FILE* stream, hid_t container, unsigned ndims, hid_t type_id, hsize_t npoints);
-H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id,
- FILE *stream, hid_t container);
-
-H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos,
- size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter);
-H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, /*in,out*/
- h5tools_str_t *buffer, /*string into which to render */
- hsize_t *curr_pos, /*total data element position*/
- size_t ncols, hsize_t *ptdata,
- hsize_t local_elmt_counter, /*element counter*/
- hsize_t elmt_counter);
+H5TOOLS_DLL int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, hid_t container,
+ unsigned ndims, hid_t type_id, hsize_t nblocks, hsize_t *ptdata);
+H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id, FILE *stream, hid_t container);
+H5TOOLS_DLL int render_bin_output_region_data_points(hid_t region_space, hid_t region_id, FILE* stream, hid_t container,
+ unsigned ndims, hid_t type_id, hsize_t npoints);
+H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id, FILE *stream, hid_t container);
+
+H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer,
+ hsize_t *curr_pos, size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter);
+H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, h5tools_str_t *buffer,
+ hsize_t *curr_pos, size_t ncols, hsize_t *ptdata, hsize_t local_elmt_counter, hsize_t elmt_counter);
#ifdef __cplusplus
}
diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c
index 2477de2..4ba89fa 100644
--- a/tools/lib/h5tools_dump.c
+++ b/tools/lib/h5tools_dump.c
@@ -253,9 +253,8 @@ h5tools_dump_init(void)
*-------------------------------------------------------------------------
*/
int
-h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container,
- h5tools_context_t *ctx, /* in,out */
- unsigned flags, hsize_t nelmts, hid_t type, void *_mem)
+h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, /* in,out */
+ hid_t container, unsigned flags, hsize_t nelmts, hid_t type, void *_mem)
{
unsigned char *mem = (unsigned char*) _mem;
hsize_t i; /* element counter */
@@ -568,9 +567,11 @@ h5tools_print_region_data_blocks(hid_t region_id, FILE *stream, const h5tool_for
ctx.indent_level++;
if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
/* assume entire data space to be printed */
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
+
+ /* reset data space to be printed */
for (indx = 0; indx < (unsigned)ctx.ndims; indx++)
ctx.p_min_idx[indx] = start[indx];
- init_acc_pos(&ctx, total_size);
/* print the data */
region_flags = START_OF_DATA;
@@ -939,9 +940,7 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id,
if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) >= 0) {
/* assume entire data space to be printed */
- for (indx = 0; indx < ctx.ndims; indx++)
- ctx.p_min_idx[indx] = 0;
- init_acc_pos(&ctx, total_size);
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
/* print the data */
region_flags = START_OF_DATA;
@@ -1253,7 +1252,6 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c
size_t j; /* counters */
hsize_t zero[1] = {0}; /* vector of zeros */
unsigned int flags; /* buffer extent flags */
- hsize_t elmtno; /* elemnt index */
hsize_t low[H5S_MAX_RANK]; /* low bound of hyperslab */
hsize_t high[H5S_MAX_RANK]; /* higher bound of hyperslab */
size_t p_type_nbytes; /* size of memory type */
@@ -1274,9 +1272,6 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c
if ((size_t) ctx->ndims > NELMTS(sm_size))
H5TOOLS_THROW(FAIL, "ndims and sm_size comparision failed");
- if (ctx->ndims > 0)
- init_acc_pos(ctx, total_size);
-
size_row_block = ctx->sset->block.data[row_dim];
/* Check if we have VL data in the dataset's datatype */
@@ -1347,27 +1342,25 @@ h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_c
for (i = 0; i < ctx->ndims; i++)
ctx->p_max_idx[i] = ctx->p_min_idx[i] + MIN(total_size[i], sm_size[i]);
- /* print array indices. get the lower bound of the hyperslab and calulate
- the element position at the start of hyperslab */
+ /* print array indices. get the lower bound of the hyperslab and calculate
+ the element position at the start of hyperslab */
if(H5Sget_select_bounds(f_space, low, high) < 0)
H5TOOLS_THROW(FAIL, "H5Sget_select_bounds failed");
- elmtno = 0;
+ /* initialize the current stripmine position; this is necessary to print the array indices */
+ ctx->sm_pos = 0;
for (i = 0; i < (size_t) ctx->ndims - 1; i++) {
hsize_t offset = 1; /* accumulation of the previous dimensions */
for (j = i + 1; j < (size_t) ctx->ndims; j++)
offset *= total_size[j];
- elmtno += low[i] * offset;
+ ctx->sm_pos += low[i] * offset;
}
- elmtno += low[ctx->ndims - 1];
+ ctx->sm_pos += low[ctx->ndims - 1];
- /* initialize the current stripmine position; this is necessary to print the array
- indices */
- ctx->sm_pos = elmtno;
ctx->need_prefix = TRUE;
- if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, sm_nelmts, p_type, sm_buf) < 0)
+ if(h5tools_dump_simple_data(stream, info, ctx, dset, flags, sm_nelmts, p_type, sm_buf) < 0)
H5TOOLS_THROW(FAIL, "h5tools_dump_simple_data failed");
/* Reclaim any VL memory, if necessary */
@@ -1571,9 +1564,8 @@ static herr_t
h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type)
{
int sndims;
- hid_t f_space = H5I_INVALID_HID; /* file data space */
- size_t i; /* counters */
- hsize_t total_size[H5S_MAX_RANK];/* total size of dataset*/
+ hid_t f_space = H5I_INVALID_HID; /* file data space */
+ hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
hbool_t past_catch = FALSE;
herr_t ret_value = SUCCEED;
@@ -1586,12 +1578,10 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co
ctx->ndims = (unsigned)sndims;
/* assume entire data space to be printed */
- if (ctx->ndims > 0)
- for (i = 0; i < (size_t) ctx->ndims; i++)
- ctx->p_min_idx[i] = 0;
-
if(H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0)
H5TOOLS_THROW(FAIL, "H5Sget_simple_extent_dims failed");
+ init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx);
+
ctx->size_last_dim = total_size[ctx->ndims - 1];
/* Set the compound datatype field list for display */
@@ -1623,38 +1613,37 @@ CATCH
*-------------------------------------------------------------------------
*/
static int
-h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
- hid_t dset, hid_t p_type)
+h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, hid_t p_type)
{
- hid_t f_space = H5I_INVALID_HID; /* file data space */
- hsize_t elmtno; /* counter */
- size_t i; /* counter */
- int sndims; /* rank of dataspace */
- int carry; /* counter carry value */
- hsize_t zero[8]; /* vector of zeros */
- unsigned int flags; /* buffer extent flags */
- hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
- hbool_t past_catch = FALSE;
+ hid_t f_space = H5I_INVALID_HID; /* file data space */
+ hsize_t elmtno; /* counter */
+ size_t i = 0; /* counter */
+ int sndims; /* rank of dataspace */
+ int carry; /* counter carry value */
+ hsize_t zero[8]; /* vector of zeros */
+ unsigned int flags; /* buffer extent flags */
+ hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
+ hbool_t past_catch = FALSE;
/* Print info */
- size_t p_type_nbytes; /* size of memory type */
- hsize_t p_nelmts; /* total selected elmts */
+ size_t p_type_nbytes; /* size of memory type */
+ hsize_t p_nelmts; /* total selected elmts */
/* Stripmine info */
- hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
- hsize_t sm_nbytes; /* bytes per stripmine */
- hsize_t sm_nelmts; /* elements per stripmine*/
- unsigned char *sm_buf = NULL; /* buffer for raw data */
- hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */
+ hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
+ hsize_t sm_nbytes; /* bytes per stripmine */
+ hsize_t sm_nelmts; /* elements per stripmine*/
+ unsigned char *sm_buf = NULL; /* buffer for raw data */
+ hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */
/* Hyperslab info */
- hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
- hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
- hsize_t hs_nelmts; /* elements in request */
+ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
+ hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
+ hsize_t hs_nelmts; /* elements in request */
/* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
- int ret_value = 0;
+ unsigned int vl_data = 0; /* contains VL datatypes */
+ int ret_value = 0;
H5TOOLS_START_DEBUG("");
if (H5I_INVALID_HID == (f_space = H5Dget_space(dset)))
@@ -1670,11 +1659,8 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
H5TOOLS_GOTO_ERROR((-1), "ctx->ndims > NELMTS(sm_size) failed");
/* Assume entire data space to be printed */
- if (ctx->ndims > 0)
- for (i = 0; i < (size_t)ctx->ndims; i++)
- ctx->p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(f_space, total_size, NULL);
+ init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx);
/* calculate the number of elements we're going to print */
p_nelmts = 1;
@@ -1720,8 +1706,6 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
H5TOOLS_DEBUG("sm_nelmts size:%ld", sm_nelmts);
- if (ctx->ndims > 0)
- init_acc_pos(ctx, total_size);
H5TOOLS_DEBUG("ctx->ndims:%d", ctx->ndims);
/* The stripmine loop */
@@ -1762,7 +1746,7 @@ h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_cont
indices */
ctx->sm_pos = elmtno;
- if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, hs_nelmts, p_type, sm_buf) < 0)
+ if(h5tools_dump_simple_data(stream, info, ctx, dset, flags, hs_nelmts, p_type, sm_buf) < 0)
H5TOOLS_ERROR((-1), "h5tools_dump_simple_data failed");
/* Reclaim any VL memory, if necessary */
@@ -1841,11 +1825,8 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte
H5TOOLS_THROW((-1), "ctx->ndims > NELMTS(ctx->p_min_idx) failed");
/* Assume entire data space to be printed */
- if (ctx->ndims > 0)
- for (i = 0; i < (size_t)ctx->ndims; i++)
- ctx->p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(f_space, total_size, NULL);
+ init_acc_pos(ctx->ndims, total_size, ctx->acc, ctx->pos, ctx->p_min_idx);
/* calculate the number of elements we're going to print */
p_nelmts = 1;
@@ -1868,14 +1849,12 @@ h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_conte
alloc_size = p_nelmts * H5Tget_size(p_type);
HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) {
- if (ctx->ndims > 0)
- init_acc_pos(ctx, total_size);
H5TOOLS_DEBUG("ctx->ndims:%d", ctx->ndims);
H5TOOLS_DEBUG("Read the data");
/* Read the data */
if (H5Aread(attr_id, p_type, buf) >= 0) {
- if(h5tools_dump_simple_data(stream, info, attr_id, ctx, START_OF_DATA | END_OF_DATA, p_nelmts, p_type, buf) < 0)
+ if(h5tools_dump_simple_data(stream, info, ctx, attr_id, START_OF_DATA | END_OF_DATA, p_nelmts, p_type, buf) < 0)
H5TOOLS_ERROR((-1), "h5tools_dump_simple_data failed");
/* Reclaim any VL memory, if necessary */
@@ -3987,6 +3966,226 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tool
}
/*-------------------------------------------------------------------------
+ * Function: dump_reference
+ *
+ * Purpose: Dump reference data
+ *
+ * Return: void
+ *-------------------------------------------------------------------------
+ */
+void
+h5tools_dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims)
+{
+ hid_t new_obj_id = H5I_INVALID_HID;
+ hid_t new_obj_sid = H5I_INVALID_HID;
+ hsize_t elmt_counter = 0; /*counts the # elements printed. */
+ size_t ncols = 80; /* available output width */
+ int i;
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t datactx; /* print context */
+
+ H5TOOLS_START_DEBUG("");
+
+ datactx = *ctx; /* print context */
+ /* Assume entire data space to be printed */
+ datactx.need_prefix = TRUE;
+
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+ for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) {
+ H5O_type_t obj_type = -1; /* Object type */
+ H5R_type_t ref_type; /* Reference type */
+
+ H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos);
+
+ datactx.need_prefix = TRUE;
+ h5tools_str_reset(&buffer);
+ H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i);
+ h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx);
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims);
+
+ ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]);
+ switch (ref_type) {
+ case H5R_OBJECT1:
+ H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
+ if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
+ switch (obj_type) {
+ case H5O_TYPE_DATASET:
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ datactx.indent_level++;
+ h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE);
+ //h5tools_dump_dset(stream, info, &datactx, new_obj_id);
+ datactx.indent_level--;
+ if(H5Dclose(new_obj_id) < 0)
+ H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed");
+ }
+ else
+ H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed");
+ break;
+
+ case H5O_TYPE_GROUP:
+ case H5O_TYPE_NAMED_DATATYPE:
+ case H5O_TYPE_MAP:
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ break;
+ } /* end switch */
+ }
+ else
+ H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed");
+ break;
+ case H5R_DATASET_REGION1:
+ H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ datactx.indent_level++;
+ h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE);
+ //h5tools_dump_dset(stream, info, &datactx, new_obj_id);
+ datactx.indent_level--;
+ if(H5Dclose(new_obj_id) < 0)
+ H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed");
+ }
+ else
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
+ break;
+ case H5R_OBJECT2:
+ H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
+ if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
+ switch (obj_type) {
+ case H5O_TYPE_GROUP:
+ break;
+
+ case H5O_TYPE_DATASET:
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ datactx.indent_level++;
+ h5tools_dump_data(stream, info, &datactx, new_obj_id, TRUE);
+ //h5tools_dump_dset(stream, info, &datactx, new_obj_id);
+ datactx.indent_level--;
+ if(H5Oclose(new_obj_id) < 0)
+ H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
+ }
+ else
+ H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed");
+ break;
+
+ case H5O_TYPE_NAMED_DATATYPE:
+ break;
+
+ case H5O_TYPE_MAP:
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ break;
+ } /* end switch */
+ }
+ else
+ H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed");
+ break;
+ case H5R_DATASET_REGION2:
+ H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
+
+ if (info->line_ncols > 0)
+ ncols = info->line_ncols;
+
+ /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
+ else {
+ if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
+ H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, " {");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+
+ datactx.need_prefix = TRUE;
+ datactx.indent_level++;
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "NULL");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+ datactx.indent_level--;
+ datactx.need_prefix = TRUE;
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "}");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+ }
+ else {
+ H5S_sel_type region_type;
+
+ region_type = H5Sget_select_type(new_obj_sid);
+ if(region_type == H5S_SEL_POINTS) {
+ /* Print point information */
+ H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2");
+ h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx,
+ &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
+ }
+ else if(region_type == H5S_SEL_HYPERSLABS) {
+ /* Print block information */
+ H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2");
+ h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx,
+ &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
+ }
+ else
+ H5TOOLS_INFO("invalid region type");
+ } /* end else to if (h5tools_is_zero(... */
+ if(H5Sclose(new_obj_sid) < 0)
+ H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
+ }
+ else
+ H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
+ if(H5Dclose(new_obj_id) < 0)
+ H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
+ }
+ break;
+ case H5R_ATTR:
+ H5TOOLS_DEBUG("ref_type is H5R_ATTR");
+ if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+ if(H5Aclose(new_obj_id) < 0)
+ H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
+ }
+ else {
+ H5TOOLS_DEBUG("NULL H5R_ATTR");
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, " {");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+
+ datactx.need_prefix = TRUE;
+ datactx.indent_level++;
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "NULL");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+ datactx.indent_level--;
+ datactx.need_prefix = TRUE;
+
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "}");
+ h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
+
+ H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
+ }
+ break;
+ case H5R_BADTYPE:
+ case H5R_MAXTYPE:
+ default:
+ break;
+ } /* end switch */
+
+ if(H5Rdestroy(&ref_buf[i]) < 0)
+ H5TOOLS_INFO("H5Rdestroy failed");
+
+ H5TOOLS_DEBUG("finished reference loop:%d",i);
+ } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */
+
+ h5tools_str_close(&buffer);
+
+ H5TOOLS_ENDDEBUG("");
+}
+
+/*-------------------------------------------------------------------------
* Function: dump_data
*
* Purpose: Dump attribute, obj_data is FALSE, or dataset data, obj_data is TRUE
@@ -3999,13 +4198,9 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *
{
H5S_class_t space_type;
int ndims;
- size_t i;
hid_t space = H5I_INVALID_HID;
hid_t f_type = H5I_INVALID_HID;
- hid_t new_obj_id = H5I_INVALID_HID;
- hid_t new_obj_sid = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
- hsize_t elmt_counter = 0; /*counts the # elements printed. */
int status = -1;
h5tools_context_t datactx; /* print context */
h5tools_str_t buffer; /* string into which to render */
@@ -4070,13 +4265,9 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *
H5TOOLS_DEBUG("ndims=%d - datactx.ndims=%d", ndims, datactx.ndims);
/* Assume entire data space to be printed */
- if (datactx.ndims > 0)
- for (i = 0; i < (size_t)datactx.ndims; i++)
- datactx.p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(space, total_size, NULL);
- if (datactx.ndims > 0)
- init_acc_pos(&datactx, total_size);
+ init_acc_pos(datactx.ndims, total_size, datactx.acc, datactx.pos, datactx.p_min_idx);
+
datactx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
@@ -4094,197 +4285,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *
H5TOOLS_GOTO_DONE_NO_RET();
}
}
- for (i = 0; i < (size_t)ndims; i++, datactx.cur_elmt++, elmt_counter++) {
- H5O_type_t obj_type = -1; /* Object type */
- H5R_type_t ref_type; /* Reference type */
-
- H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos);
-
- datactx.need_prefix = TRUE;
- h5tools_str_reset(&buffer);
- H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i);
- h5tools_str_sprint(&buffer, &outputformat, obj_id, H5T_STD_REF, &ref_buf[i], &datactx);
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims);
-
- ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]);
- switch (ref_type) {
- case H5R_OBJECT1:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed");
- break;
-
- case H5O_TYPE_GROUP:
- case H5O_TYPE_NAMED_DATATYPE:
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed");
- break;
- case H5R_DATASET_REGION1:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
- break;
- case H5R_OBJECT2:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_GROUP:
- break;
-
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_data(stream, &outputformat, &datactx, new_obj_id, TRUE);
- datactx.indent_level--;
- if(H5Oclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed");
- break;
-
- case H5O_TYPE_NAMED_DATATYPE:
- break;
-
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed");
- break;
- case H5R_DATASET_REGION2:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
-
- if (outputformat.line_ncols > 0)
- ncols = outputformat.line_ncols;
-
- /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
- else {
- if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
- H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.indent_level++;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- }
- else {
- H5S_sel_type region_type;
-
- region_type = H5Sget_select_type(new_obj_sid);
- if(region_type == H5S_SEL_POINTS) {
- /* Print point information */
- H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2");
- h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, &outputformat, &datactx,
- &buffer, &curr_pos, ncols, i, elmt_counter);
- }
- else if(region_type == H5S_SEL_HYPERSLABS) {
- /* Print block information */
- H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2");
- h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, &outputformat, &datactx,
- &buffer, &curr_pos, ncols, i, elmt_counter);
- }
- else
- H5TOOLS_INFO("invalid region type");
- } /* end else to if (h5tools_is_zero(... */
- if(H5Sclose(new_obj_sid) < 0)
- H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
- }
- break;
- case H5R_ATTR:
- H5TOOLS_DEBUG("ref_type is H5R_ATTR");
- if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- h5tools_dump_region_attribute(new_obj_id, stream, &outputformat, &datactx,
- &buffer, &curr_pos, ncols, i, elmt_counter);
- if(H5Aclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
- }
- else {
- H5TOOLS_DEBUG("NULL H5R_ATTR");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.indent_level++;
- datactx.need_prefix = TRUE;
-
- datactx.indent_level++;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- datactx.indent_level--;
-
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, &outputformat, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
- }
- break;
- case H5R_BADTYPE:
- case H5R_MAXTYPE:
- default:
- break;
- } /* end switch */
-
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy failed");
-
- H5TOOLS_DEBUG("finished reference loop:%d",i);
- } /* end for(i = 0; i < ndims; i++, datactx->cur_elmt++, elmt_counter++) */
+ h5tools_dump_reference(stream, &outputformat, &datactx, obj_id, ref_buf, ndims);
HDfree(ref_buf);
}
ctx->indent_level--;
diff --git a/tools/lib/h5tools_dump.h b/tools/lib/h5tools_dump.h
index 2cd0bc1..add2e46 100644
--- a/tools/lib/h5tools_dump.h
+++ b/tools/lib/h5tools_dump.h
@@ -36,63 +36,53 @@ H5TOOLS_DLLVAR table_t *h5dump_type_table; /*type table reference for datatype
/* Definitions of useful routines */
H5TOOLS_DLL void h5tools_dump_init(void);
-H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t dset);
-H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t obj_id);
-H5TOOLS_DLL int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container,
- h5tools_context_t *ctx/*in,out*/, unsigned flags,
- hsize_t nelmts, hid_t type, void *_mem);
-H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t type);
-H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t space);
-H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, const char *attr_name, hid_t attr_id);
-H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t oid);
-H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id);
-H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/, hid_t obj_id);
-H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx, hid_t obj_id, int obj_data);
+H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t dset);
+H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t obj_id);
+H5TOOLS_DLL int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t container, unsigned flags, hsize_t nelmts, hid_t type, void *_mem);
+H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t type);
+H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t space);
+H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ const char *attr_name, hid_t attr_id);
+H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t oid);
+H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t dcpl, hid_t type_id, hid_t obj_id);
+H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t obj_id);
+H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hid_t obj_id, int obj_data);
+H5TOOLS_DLL void h5tools_dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
+ hid_t container, H5R_ref_t *ref_buf, int ndims);
H5TOOLS_DLL hbool_t h5tools_dump_region_attribute(hid_t region_id,
- FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/,
- h5tools_str_t *buffer/*string into which to render */,
- hsize_t *curr_pos/*total data element position*/,
- size_t ncols, hsize_t region_elmt_counter/*element counter*/,
- hsize_t elmt_counter);
+ FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter);
H5TOOLS_DLL hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id,
- FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/,
- h5tools_str_t *buffer/*string into which to render */,
- hsize_t *curr_pos/*total data element position*/,
- size_t ncols, hsize_t region_elmt_counter/*element counter*/,
- hsize_t elmt_counter);
+ FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter);
H5TOOLS_DLL hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id,
- FILE *stream, const h5tool_format_t *info,
- h5tools_context_t *ctx/*in,out*/,
- h5tools_str_t *buffer/*string into which to render */,
- hsize_t *curr_pos/*total data element position*/,
- size_t ncols, hsize_t region_elmt_counter/*element counter*/,
- hsize_t elmt_counter);
+ FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter, hsize_t elmt_counter);
-H5TOOLS_DLL int h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer/*in,out*/,
- const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+H5TOOLS_DLL int h5tools_print_datatype(FILE *stream,
+ h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
hid_t type, int object_search);
H5TOOLS_DLL int h5tools_print_dataspace(h5tools_str_t *buffer/*in,out*/,
hid_t space);
-H5TOOLS_DLL int h5tools_print_enum(FILE *stream, h5tools_str_t *buffer/*in,out*/,
- const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+H5TOOLS_DLL int h5tools_print_enum(FILE *stream,
+ h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
hid_t type);
-H5TOOLS_DLL void h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/,
- const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+H5TOOLS_DLL void h5tools_print_fill_value(
+ h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
hid_t dcpl, hid_t type_id, hid_t obj_id);
H5TOOLS_DLL void h5tools_print_packed_bits(h5tools_str_t *buffer/*in,out*/, hid_t type);
+
#ifdef __cplusplus
}
#endif
diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c
index 5c777a9..1c573a7 100644
--- a/tools/lib/h5tools_str.c
+++ b/tools/lib/h5tools_str.c
@@ -278,47 +278,28 @@ h5tools_str_fmt(h5tools_str_t *str/*in,out*/, size_t start, const char *fmt)
* Purpose: Renders the line prefix value into string STR.
*
* Return: Success: Pointer to the prefix.
- *
* Failure: NULL
- *
- * Programmer: Robb Matzke
- * Thursday, July 23, 1998
*-------------------------------------------------------------------------
*/
char *
-h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info,
- hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx)
+h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, hsize_t elmtno,
+ h5tools_context_t *ctx)
{
size_t i = 0;
- hsize_t curr_pos = elmtno;
H5TOOLS_START_DEBUG("");
H5TOOLS_DEBUG("elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims);
h5tools_str_reset(str);
- H5TOOLS_DEBUG("ndims=%d", ndims);
- if(ndims > 0) {
- /*
- * Calculate the number of elements represented by a unit change in a
- * certain index position.
- */
- for(i = 0; i < (size_t) ndims; i++) {
- H5TOOLS_DEBUG("curr_pos=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->acc[i]);
- ctx->pos[i] = curr_pos / ctx->acc[i];
- curr_pos -= ctx->acc[i] * ctx->pos[i];
- H5TOOLS_DEBUG("curr_pos=%ld - ctx->pos[%d]=%ld - ctx->acc[%d]=%ld", curr_pos, i, ctx->pos[i], i, ctx->acc[i]);
- }
- HDassert(curr_pos == 0);
-
+ calc_acc_pos(ctx->ndims, elmtno, ctx->acc, ctx->pos);
+ if(ctx->ndims > 0) {
/* Print the index values */
- for(i = 0; i < (size_t) ndims; i++) {
+ for(i = 0; i < (size_t) ctx->ndims; i++) {
if (i)
h5tools_str_append(str, "%s", OPT(info->idx_sep, ","));
- h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT),
- (hsize_t) ctx->pos[i]);
-
+ h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) ctx->pos[i]);
}
}
else /* Scalar */
@@ -338,52 +319,35 @@ h5tools_str_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info,
*
* Return: Success: Pointer to the prefix.
* Failure: NULL
- *
- * In/Out:
- * h5tools_context_t *ctx
- * h5tools_str_t *str
*-------------------------------------------------------------------------
*/
char *
-h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
- hsize_t elmtno, hsize_t *ptdata, unsigned ndims, hsize_t max_idx[],
- h5tools_context_t *ctx)
+h5tools_str_region_prefix(h5tools_str_t *str/*in,out*/, const h5tool_format_t *info, hsize_t elmtno,
+ hsize_t *ptdata, h5tools_context_t *ctx)
{
size_t i = 0;
- hsize_t curr_pos = elmtno;
- hsize_t p_prod[H5S_MAX_RANK];
-
- h5tools_str_reset(str);
- if(ndims > 0) {
- /*
- * Calculate the number of elements represented by a unit change in a
- * certain index position.
- */
- for(i = ndims - 1, p_prod[ndims - 1] = 1; i > 0; --i)
- p_prod[i - 1] = (max_idx[i]) * p_prod[i];
+ H5TOOLS_START_DEBUG("");
- for(i = 0; i < (size_t) ndims; i++) {
- if(curr_pos > 0) {
- ctx->pos[i] = curr_pos / p_prod[i];
- curr_pos -= p_prod[i] * ctx->pos[i];
- }
- else
- ctx->pos[i] = 0;
- ctx->pos[i] += (unsigned long) ptdata[ctx->sm_pos+i];
- }
+ H5TOOLS_DEBUG("elmtno=%ld, ctx->ndims=%d", elmtno, ctx->ndims);
+ h5tools_str_reset(str);
+ calc_acc_pos(ctx->ndims, elmtno, ctx->acc, ctx->pos);
+ if(ctx->ndims > 0) {
/* Print the index values */
- for(i = 0; i < (size_t) ndims; i++) {
- if(i)
+ for(i = 0; i < (size_t) ctx->ndims; i++) {
+ ctx->pos[i] += (unsigned long) ptdata[ctx->sm_pos+i];
+ if (i)
h5tools_str_append(str, "%s", OPT(info->idx_sep, ","));
h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) ctx->pos[i]);
-
}
- } /* if (ndims > 0) */
+ }
else /* Scalar */
- h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t) 0);
+ h5tools_str_append(str, OPT(info->idx_n_fmt, HSIZE_T_FORMAT), (hsize_t)0);
+ H5TOOLS_DEBUG("str=%s", str->s);
+
+ H5TOOLS_ENDDEBUG("");
/* Add prefix and suffix to the index */
return h5tools_str_fmt(str, (size_t)0, OPT(info->idx_fmt, "%s: "));
@@ -708,6 +672,7 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
if(info->raw) {
size_t i;
+ H5TOOLS_DEBUG("info->raw");
if(1 == nsize)
h5tools_str_append(str, OPT(info->fmt_raw, "0x%02x"), ucp_vp[0]);
else
@@ -718,8 +683,11 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
}
}
else {
- if((type_class = H5Tget_class(type)) < 0)
+ H5TOOLS_DEBUG("H5Tget_class(type)");
+ if((type_class = H5Tget_class(type)) < 0) {
+ H5TOOLS_ENDDEBUG(" with %s", "NULL");
return NULL;
+ }
switch (type_class) {
case H5T_FLOAT:
H5TOOLS_DEBUG("H5T_FLOAT");
diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h
index 02bfe40..074e86d 100644
--- a/tools/lib/h5tools_str.h
+++ b/tools/lib/h5tools_str.h
@@ -31,13 +31,12 @@ H5TOOLS_DLL char *h5tools_str_reset(h5tools_str_t *str);
H5TOOLS_DLL char *h5tools_str_trunc(h5tools_str_t *str, size_t size);
H5TOOLS_DLL char *h5tools_str_fmt(h5tools_str_t *str, size_t start, const char *fmt);
H5TOOLS_DLL char *h5tools_str_prefix(h5tools_str_t *str, const h5tool_format_t *info,
- hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx);
+ hsize_t elmtno, h5tools_context_t *ctx);
/*
* new functions needed to display region reference data
*/
H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
- hsize_t elmtno, hsize_t *ptdata, unsigned ndims,
- hsize_t max_idx[], h5tools_context_t *ctx);
+ hsize_t elmtno, hsize_t *ptdata, h5tools_context_t *ctx);
H5TOOLS_DLL void h5tools_str_dump_space_slabs(h5tools_str_t *, hid_t, const h5tool_format_t *, h5tools_context_t *ctx);
H5TOOLS_DLL void h5tools_str_dump_space_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *);
H5TOOLS_DLL void h5tools_str_dump_space_points(h5tools_str_t *, hid_t, const h5tool_format_t *);
diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c
index 472824b..5c0c31d 100644
--- a/tools/lib/io_timer.c
+++ b/tools/lib/io_timer.c
@@ -23,7 +23,6 @@
*/
#include "H5private.h"
-#include "hdf5.h"
#include "io_timer.h"
diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c
index 8805d08..5b19ae7 100644
--- a/tools/src/h5copy/h5copy.c
+++ b/tools/src/h5copy/h5copy.c
@@ -207,10 +207,6 @@ static int parse_flag(const char* s_flag, unsigned *flag)
int
main (int argc, const char *argv[])
{
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
hid_t fid_src = H5I_INVALID_HID;
hid_t fid_dst = H5I_INVALID_HID;
unsigned flag = 0;
@@ -226,17 +222,9 @@ main (int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* init linkinfo struct */
HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
@@ -330,10 +318,8 @@ main (int argc, const char *argv[])
leave(EXIT_FAILURE);
}
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
+ /* enable error reporting if command line option */
+ h5tools_error_report();
/*-------------------------------------------------------------------------
* open output file
diff --git a/tools/src/h5diff/h5diff_common.c b/tools/src/h5diff/h5diff_common.c
index e0e6f8c..a02ad5a 100644
--- a/tools/src/h5diff/h5diff_common.c
+++ b/tools/src/h5diff/h5diff_common.c
@@ -25,7 +25,7 @@ static int check_d_input(const char*);
* Command-line options: The user can specify short or long-named
* parameters.
*/
-static const char *s_opts = "hVrv:qn:d:p:NcelxE:S";
+static const char *s_opts = "hVrv:qn:d:p:NcelxE:A:S";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "version", no_arg, 'V' },
@@ -41,6 +41,7 @@ static struct long_options l_opts[] = {
{ "follow-symlinks", no_arg, 'l' },
{ "no-dangling-links", no_arg, 'x' },
{ "exclude-path", require_arg, 'E' },
+ { "exclude-attribute", require_arg, 'A' },
{ "enable-error-stack", no_arg, 'S' },
{ "vol-value-1", require_arg, '1' },
{ "vol-name-1", require_arg, '2' },
@@ -55,7 +56,6 @@ static struct long_options l_opts[] = {
* Function: check_options
*
* Purpose: parse command line input
- *
*-------------------------------------------------------------------------
*/
static void check_options(diff_opt_t* opts)
@@ -67,7 +67,7 @@ static void check_options(diff_opt_t* opts)
/* check between -d , -p, --use-system-epsilon.
* These options are mutually exclusive.
*/
- if ((opts->d + opts->p + opts->use_system_epsilon) > 1) {
+ if ((opts->delta_bool + opts->percent_bool + opts->use_system_epsilon) > 1) {
HDprintf("%s error: -d, -p and --use-system-epsilon options are mutually-exclusive;\n", PROGRAMNAME);
HDprintf("use no more than one.\n");
HDprintf("Try '-h' or '--help' option for more information or see the %s entry in the 'HDF5 Reference Manual'.\n", PROGRAMNAME);
@@ -75,27 +75,138 @@ static void check_options(diff_opt_t* opts)
}
}
+/*-------------------------------------------------------------------------
+ * Function: parse_hsize_list
+ *
+ * Purpose: Parse a list of comma or space separated integers and return
+ * them in a list. The string being passed into this function
+ * should be at the start of the list you want to parse. You are
+ * responsible for freeing the array returned from here.
+ *
+ * Lists in the so-called "terse" syntax are separated by
+ * semicolons (;). The lists themselves can be separated by
+ * either commas (,) or white spaces.
+ *
+ * Return: <none>
+ *-------------------------------------------------------------------------
+ */
+static void
+parse_hsize_list(const char *h_list, subset_d *d)
+{
+ hsize_t *p_list;
+ const char *ptr;
+ unsigned int size_count = 0;
+ unsigned int i = 0;
+ unsigned int last_digit = 0;
+
+ if (!h_list || !*h_list || *h_list == ';')
+ return;
+
+ H5TOOLS_START_DEBUG(" - h_list:%s", h_list);
+ /* count how many integers do we have */
+ for (ptr = h_list; ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++)
+ if (HDisdigit(*ptr)) {
+ if (!last_digit)
+ /* the last read character wasn't a digit */
+ size_count++;
+
+ last_digit = 1;
+ }
+ else
+ last_digit = 0;
+
+ if (size_count == 0) {
+ /* there aren't any integers to read */
+ H5TOOLS_ENDDEBUG("No integers to read");
+ return;
+ }
+ H5TOOLS_DEBUG("Number integers to read=%ld", size_count);
+
+ /* allocate an array for the integers in the list */
+ if((p_list = (hsize_t *)HDcalloc(size_count, sizeof(hsize_t))) == NULL)
+ H5TOOLS_INFO("Unable to allocate space for subset data");
+
+ for (ptr = h_list; i < size_count && ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++)
+ if(HDisdigit(*ptr)) {
+ /* we should have an integer now */
+ p_list[i++] = (hsize_t)HDstrtoull(ptr, NULL, 0);
+
+ while (HDisdigit(*ptr))
+ /* scroll to end of integer */
+ ptr++;
+ }
+ d->data = p_list;
+ d->len = size_count;
+ H5TOOLS_ENDDEBUG("");
+}
+
+/*-------------------------------------------------------------------------
+ * Function: parse_subset_params
+ *
+ * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters.
+ *
+ * Return: Success: struct subset_t object
+ * Failure: NULL
+ *-------------------------------------------------------------------------
+ */
+static struct subset_t *
+parse_subset_params(const char *dset)
+{
+ struct subset_t *s = NULL;
+ char *brace;
+
+ H5TOOLS_START_DEBUG(" - dset:%s", dset);
+ if ((brace = HDstrrchr(dset, '[')) != NULL) {
+ *brace++ = '\0';
+
+ s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t));
+ parse_hsize_list(brace, &s->start);
+
+ while (*brace && *brace != ';')
+ brace++;
+
+ if (*brace)
+ brace++;
+
+ parse_hsize_list(brace, &s->stride);
+
+ while (*brace && *brace != ';')
+ brace++;
+
+ if (*brace)
+ brace++;
+
+ parse_hsize_list(brace, &s->count);
+
+ while (*brace && *brace != ';')
+ brace++;
+
+ if (*brace)
+ brace++;
+
+ parse_hsize_list(brace, &s->block);
+ }
+ H5TOOLS_ENDDEBUG("");
+
+ return s;
+}
+
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: parse command line input
- *
*-------------------------------------------------------------------------
*/
-void parse_command_line(int argc,
- const char* argv[],
- const char** fname1,
- const char** fname2,
- const char** objname1,
- const char** objname2,
- diff_opt_t* opts)
+void parse_command_line(int argc, const char* argv[], const char** fname1, const char** fname2, const char** objname1, const char** objname2, diff_opt_t* opts)
{
int i;
int opt;
struct exclude_path_list *exclude_head, *exclude_prev, *exclude_node;
+ struct exclude_path_list *exclude_attr_head, *exclude_attr_prev, *exclude_attr_node;
+ H5TOOLS_START_DEBUG("");
/* process the command-line */
HDmemset(opts, 0, sizeof (diff_opt_t));
@@ -106,15 +217,18 @@ void parse_command_line(int argc,
opts->do_nans = 1;
/* not Listing objects that are not comparable */
- opts->m_list_not_cmp = 0;
+ opts->mode_list_not_cmp = 0;
/* initially no not-comparable. */
/**this is bad in mixing option with results**/
- opts->not_cmp=0;
+ opts->not_cmp = 0;
/* init for exclude-path option */
exclude_head = NULL;
+ /* init for exclude-attribute option */
+ exclude_attr_head = NULL;
+
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
@@ -134,7 +248,7 @@ void parse_command_line(int argc,
break;
case 'v':
- opts->m_verbose = 1;
+ opts->mode_verbose = 1;
/* This for loop is for handling style like
* -v, -v1, --verbose, --verbose=1.
*/
@@ -144,11 +258,11 @@ void parse_command_line(int argc,
*/
if (!strcmp (argv[i], "-v")) { /* no arg */
opt_ind--;
- opts->m_verbose_level = 0;
+ opts->mode_verbose_level = 0;
break;
}
else if (!strncmp (argv[i], "-v", (size_t)2)) {
- opts->m_verbose_level = atoi(&argv[i][2]);
+ opts->mode_verbose_level = atoi(&argv[i][2]);
break;
}
@@ -156,11 +270,11 @@ void parse_command_line(int argc,
* long opt
*/
if (!strcmp (argv[i], "--verbose")) { /* no arg */
- opts->m_verbose_level = 0;
+ opts->mode_verbose_level = 0;
break;
}
- else if ( !strncmp (argv[i], "--verbose", (size_t)9) && argv[i][9]=='=') {
- opts->m_verbose_level = atoi(&argv[i][10]);
+ else if (!strncmp (argv[i], "--verbose", (size_t)9) && argv[i][9]=='=') {
+ opts->mode_verbose_level = atoi(&argv[i][10]);
break;
}
}
@@ -168,11 +282,11 @@ void parse_command_line(int argc,
case 'q':
/* use quiet mode; supress the message "0 differences found" */
- opts->m_quiet = 1;
+ opts->mode_quiet = 1;
break;
case 'r':
- opts->m_report = 1;
+ opts->mode_report = 1;
break;
case 'l':
@@ -214,23 +328,47 @@ void parse_command_line(int argc,
}
break;
+ case 'A':
+ opts->exclude_attr_path = 1;
+
+ /* create linked list of excluding objects */
+ if( (exclude_attr_node = (struct exclude_path_list*) HDmalloc(sizeof(struct exclude_path_list))) == NULL) {
+ HDprintf("Error: lack of memory!\n");
+ h5diff_exit(EXIT_FAILURE);
+ }
+
+ /* init */
+ exclude_attr_node->obj_path = opt_arg;
+ exclude_attr_node->obj_type = H5TRAV_TYPE_UNKNOWN;
+ exclude_attr_prev = exclude_attr_head;
+
+ if (NULL == exclude_attr_head) {
+ exclude_attr_head = exclude_attr_node;
+ exclude_attr_head->next = NULL;
+ }
+ else {
+ while(NULL != exclude_attr_prev->next)
+ exclude_attr_prev = exclude_attr_prev->next;
+
+ exclude_attr_node->next = NULL;
+ exclude_attr_prev->next = exclude_attr_node;
+ }
+ break;
+
case 'd':
- opts->d = 1;
+ opts->delta_bool = 1;
- if (check_d_input(opt_arg) == - 1) {
+ if (check_d_input(opt_arg) == -1) {
HDprintf("<-d %s> is not a valid option\n", opt_arg);
usage();
h5diff_exit(EXIT_FAILURE);
}
opts->delta = HDatof(opt_arg);
-
- /* -d 0 is the same as default */
- if (H5_DBL_ABS_EQUAL(opts->delta, (double)0.0F))
- opts->d=0;
+ /* do not check against default, the DBL_EPSILON is being replaced by user */
break;
case 'p':
- opts->p = 1;
+ opts->percent_bool = 1;
if (check_p_input(opt_arg) == -1) {
HDprintf("<-p %s> is not a valid option\n", opt_arg);
usage();
@@ -240,12 +378,12 @@ void parse_command_line(int argc,
/* -p 0 is the same as default */
if (H5_DBL_ABS_EQUAL(opts->percent, (double)0.0F))
- opts->p = 0;
+ opts->percent_bool = 0;
break;
case 'n':
- opts->n = 1;
- if ( check_n_input(opt_arg) == -1) {
+ opts->count_bool = 1;
+ if (check_n_input(opt_arg) == -1) {
HDprintf("<-n %s> is not a valid option\n", opt_arg);
usage();
h5diff_exit(EXIT_FAILURE);
@@ -258,7 +396,7 @@ void parse_command_line(int argc,
break;
case 'c':
- opts->m_list_not_cmp = 1;
+ opts->mode_list_not_cmp = 1;
break;
case 'e':
@@ -266,35 +404,35 @@ void parse_command_line(int argc,
break;
case '1':
- opts->vol_info_1.type = VOL_BY_VALUE;
- opts->vol_info_1.u.value = (H5VL_class_value_t)HDatoi(opt_arg);
- opts->custom_vol_1 = TRUE;
+ opts->vol_info[0].type = VOL_BY_VALUE;
+ opts->vol_info[0].u.value = (H5VL_class_value_t)HDatoi(opt_arg);
+ opts->custom_vol[0] = TRUE;
break;
case '2':
- opts->vol_info_1.type = VOL_BY_NAME;
- opts->vol_info_1.u.name = opt_arg;
- opts->custom_vol_1 = TRUE;
+ opts->vol_info[0].type = VOL_BY_NAME;
+ opts->vol_info[0].u.name = opt_arg;
+ opts->custom_vol[0] = TRUE;
break;
case '3':
- opts->vol_info_1.info_string = opt_arg;
+ opts->vol_info[0].info_string = opt_arg;
break;
case '4':
- opts->vol_info_2.type = VOL_BY_VALUE;
- opts->vol_info_2.u.value = (H5VL_class_value_t)HDatoi(opt_arg);
- opts->custom_vol_2 = TRUE;
+ opts->vol_info[1].type = VOL_BY_VALUE;
+ opts->vol_info[1].u.value = (H5VL_class_value_t)HDatoi(opt_arg);
+ opts->custom_vol[1] = TRUE;
break;
case '5':
- opts->vol_info_2.type = VOL_BY_NAME;
- opts->vol_info_2.u.name = opt_arg;
- opts->custom_vol_2 = TRUE;
+ opts->vol_info[1].type = VOL_BY_NAME;
+ opts->vol_info[1].u.name = opt_arg;
+ opts->custom_vol[1] = TRUE;
break;
case '6':
- opts->vol_info_2.info_string = opt_arg;
+ opts->vol_info[1].info_string = opt_arg;
break;
}
}
@@ -306,30 +444,46 @@ void parse_command_line(int argc,
if (opts->exclude_path)
opts->exclude = exclude_head;
+ /* if exclude-attribute option is used, keep the exclude attr list */
+ if (opts->exclude_attr_path)
+ opts->exclude_attr = exclude_attr_head;
+
/* check for file names to be processed */
- if (argc <= opt_ind || argv[ opt_ind + 1 ] == NULL) {
+ if (argc <= opt_ind || argv[opt_ind + 1] == NULL) {
error_msg("missing file names\n");
usage();
h5diff_exit(EXIT_FAILURE);
}
- *fname1 = argv[ opt_ind ];
- *fname2 = argv[ opt_ind + 1 ];
- *objname1 = argv[ opt_ind + 2 ];
+ *fname1 = argv[opt_ind];
+ *fname2 = argv[opt_ind + 1];
+ *objname1 = argv[opt_ind + 2];
+ H5TOOLS_DEBUG("file1 = %s", *fname1);
+ H5TOOLS_DEBUG("file2 = %s", *fname2);
if (*objname1 == NULL) {
*objname2 = NULL;
+ H5TOOLS_ENDDEBUG("No obj names");
return;
}
+ H5TOOLS_DEBUG("objname1 = %s", *objname1);
- if (argv[ opt_ind + 3 ] != NULL) {
- *objname2 = argv[ opt_ind + 3 ];
+ if (argv[opt_ind + 3] != NULL) {
+ *objname2 = argv[opt_ind + 3];
}
else {
*objname2 = *objname1;
}
+ H5TOOLS_DEBUG("objname2 = %s", *objname2);
+ /*
+ * TRILABS-227 is complete except for an issue with printing indices
+ * the following calls will enable subsetting
+ opts->sset[0] = parse_subset_params(*objname1);
+ opts->sset[1] = parse_subset_params(*objname2);
+ */
+ H5TOOLS_ENDDEBUG("");
}
@@ -337,26 +491,25 @@ void parse_command_line(int argc,
* Function: print_info
*
* Purpose: print several information messages after h5diff call
- *
*-------------------------------------------------------------------------
*/
void print_info(diff_opt_t* opts)
{
- if (opts->m_quiet || opts->err_stat)
+ if (opts->mode_quiet || opts->err_stat)
return;
if (opts->cmn_objs == 0) {
HDprintf("No common objects found. Files are not comparable.\n");
- if (!opts->m_verbose)
+ if (!opts->mode_verbose)
HDprintf("Use -v for a list of objects.\n");
}
if (opts->not_cmp == 1) {
- if (opts->m_list_not_cmp == 0) {
+ if (opts->mode_list_not_cmp == 0) {
HDprintf("--------------------------------\n");
HDprintf("Some objects are not comparable\n");
HDprintf("--------------------------------\n");
- if (opts->m_verbose)
+ if (opts->mode_verbose)
HDprintf("Use -c for a list of objects without details of differences.\n");
else
HDprintf("Use -c for a list of objects.\n");
@@ -370,19 +523,10 @@ void print_info(diff_opt_t* opts)
* Purpose: check for valid input
*
* Return: 1 for ok, -1 for fail
- *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
- *
- * Date: May 9, 2003
- *
- * Comments:
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
H5_ATTR_PURE static int
-check_n_input( const char *str )
+check_n_input(const char *str)
{
unsigned i;
char c;
@@ -406,24 +550,17 @@ check_n_input( const char *str )
* Purpose: check for a valid p option input
*
* Return: 1 for ok, -1 for fail
- *
- * Date: May 9, 2003
- *
- * Comments:
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static int
-check_p_input( const char *str )
+check_p_input(const char *str)
{
double x;
/*
- the atof return value on a hexadecimal input is different
- on some systems; we do a character check for this
- */
+ * the atof return value on a hexadecimal input is different
+ * on some systems; we do a character check for this
+ */
if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x')
return -1;
@@ -440,24 +577,17 @@ check_p_input( const char *str )
* Purpose: check for a valid d option input
*
* Return: 1 for ok, -1 for fail
- *
- * Date: November 11, 2007
- *
- * Comments:
- *
- * Modifications:
- *
*-------------------------------------------------------------------------
*/
static int
-check_d_input( const char *str )
+check_d_input(const char *str)
{
double x;
/*
- the atof return value on a hexadecimal input is different
- on some systems; we do a character check for this
- */
+ * the atof return value on a hexadecimal input is different
+ * on some systems; we do a character check for this
+ */
if (HDstrlen(str) > 2 && str[0] == '0' && str[1] == 'x')
return -1;
@@ -474,7 +604,6 @@ check_d_input( const char *str )
* Purpose: print a usage message
*
* Return: void
- *
*-------------------------------------------------------------------------
*/
@@ -499,10 +628,9 @@ void usage(void)
PRINTVALSTREAM(rawoutstream, " Verbose mode with level. Print differences and list of objects.\n");
PRINTVALSTREAM(rawoutstream, " Level of detail depends on value of N:\n");
PRINTVALSTREAM(rawoutstream, " 0 : Identical to '-v' or '--verbose'.\n");
- PRINTVALSTREAM(rawoutstream, " 1 : All level 0 information plus one-line attribute\n");
- PRINTVALSTREAM(rawoutstream, " status summary.\n");
- PRINTVALSTREAM(rawoutstream, " 2 : All level 1 information plus extended attribute\n");
- PRINTVALSTREAM(rawoutstream, " status report.\n");
+ PRINTVALSTREAM(rawoutstream, " 1 : All level 0 information plus one-line attribute status summary.\n");
+ PRINTVALSTREAM(rawoutstream, " 2 : All level 1 information plus extended attribute status report.\n");
+ PRINTVALSTREAM(rawoutstream, " 3 : All level 2 information plus file names.\n");
PRINTVALSTREAM(rawoutstream, " -q, --quiet\n");
PRINTVALSTREAM(rawoutstream, " Quiet mode. Do not produce output.\n");
PRINTVALSTREAM(rawoutstream, " --enable-error-stack\n");
@@ -591,7 +719,14 @@ void usage(void)
PRINTVALSTREAM(rawoutstream, " excluded.\n");
PRINTVALSTREAM(rawoutstream, " This option can be used repeatedly to exclude multiple paths.\n");
PRINTVALSTREAM(rawoutstream, "\n");
-
+ PRINTVALSTREAM(rawoutstream, " --exclude-attribute \"path/to/object/with/attribute\"\n");
+ PRINTVALSTREAM(rawoutstream, " Exclude attributes on the specified path to an object when comparing files or groups.\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " If there are multiple paths to an object, only the specified path(s)\n");
+ PRINTVALSTREAM(rawoutstream, " will be excluded; the comparison will include any path not explicitly\n");
+ PRINTVALSTREAM(rawoutstream, " excluded.\n");
+ PRINTVALSTREAM(rawoutstream, " This option can be used repeatedly to exclude multiple paths.\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
PRINTVALSTREAM(rawoutstream, " Modes of output:\n");
PRINTVALSTREAM(rawoutstream, " Default mode: print the number of differences found and where they occured\n");
PRINTVALSTREAM(rawoutstream, " -r Report mode: print the above plus the differences\n");
@@ -622,7 +757,22 @@ void usage(void)
PRINTVALSTREAM(rawoutstream, " (The option --follow-symlinks overrides the default behavior when\n");
PRINTVALSTREAM(rawoutstream, " symbolic links are compared.).\n");
PRINTVALSTREAM(rawoutstream, "\n");
-
+ /*
+ * TRILABS-227 is complete except for an issue with printing indices
+ * the following will be needed for subsetting
+ PRINTVALSTREAM(rawoutstream, " Subsetting options:\n");
+ PRINTVALSTREAM(rawoutstream, " Subsetting is available by using the fcompact form of subsetting, as follows:\n");
+ PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START;STRIDE;COUNT;BLOCK]\n");
+ PRINTVALSTREAM(rawoutstream, " It is not required to use all parameters, but until the last parameter value used,\n");
+ PRINTVALSTREAM(rawoutstream, " all of the semicolons (;) are required, even when a parameter value is not specified. Example:\n");
+ PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START;;COUNT;BLOCK]\n");
+ PRINTVALSTREAM(rawoutstream, " obj1 /foo/mydataset[START]\n");
+ PRINTVALSTREAM(rawoutstream, " The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in\n");
+ PRINTVALSTREAM(rawoutstream, " each dimension. START is optional and will default to 0 in each dimension.\n");
+ PRINTVALSTREAM(rawoutstream, " Each of START, STRIDE, COUNT, and BLOCK must be a comma-separated list of integers with\n");
+ PRINTVALSTREAM(rawoutstream, " one integer for each dimension of the dataset.\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+*/
PRINTVALSTREAM(rawoutstream, " Exit code:\n");
PRINTVALSTREAM(rawoutstream, " 0 if no differences, 1 if differences found, 2 if error\n");
PRINTVALSTREAM(rawoutstream, "\n");
diff --git a/tools/src/h5diff/h5diff_main.c b/tools/src/h5diff/h5diff_main.c
index c5a0cbf..33d6570 100644
--- a/tools/src/h5diff/h5diff_main.c
+++ b/tools/src/h5diff/h5diff_main.c
@@ -69,10 +69,7 @@
int main(int argc, const char *argv[])
{
int ret;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
+ int i;
const char *fname1 = NULL;
const char *fname2 = NULL;
const char *objname1 = NULL;
@@ -83,27 +80,17 @@ int main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/*-------------------------------------------------------------------------
* process the command-line
*-------------------------------------------------------------------------
*/
parse_command_line(argc, argv, &fname1, &fname2, &objname1, &objname2, &opts);
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
+ /* enable error reporting if command line option */
+ h5tools_error_report();
/*-------------------------------------------------------------------------
* do the diff
@@ -130,6 +117,23 @@ int main(int argc, const char *argv[])
if (opts.err_stat)
ret = 2;
+ /* free any buffers */
+ for (i = 0; i < 2; i++) {
+ if (opts.sset[i]) {
+ if(opts.sset[i]->start.data)
+ HDfree(opts.sset[i]->start.data);
+ if(opts.sset[i]->stride.data)
+ HDfree(opts.sset[i]->stride.data);
+ if(opts.sset[i]->count.data)
+ HDfree(opts.sset[i]->count.data);
+ if(opts.sset[i]->block.data)
+ HDfree(opts.sset[i]->block.data);
+
+ HDfree(opts.sset[i]);
+ opts.sset[i]=NULL;
+ }
+ }
+
h5diff_exit(ret);
}
diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c
index dfaff17..2b21b1c 100644
--- a/tools/src/h5dump/h5dump.c
+++ b/tools/src/h5dump/h5dump.c
@@ -655,12 +655,12 @@ parse_hsize_list(const char *h_list, subset_d *d)
*-------------------------------------------------------------------------
*/
static struct subset_t *
-parse_subset_params(char *dset)
+parse_subset_params(const char *dset)
{
struct subset_t *s = NULL;
char *brace;
- if (!disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) {
+ if (!dump_opts.disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) {
*brace++ = '\0';
s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t));
@@ -891,50 +891,50 @@ parse_command_line(int argc, const char *argv[])
parse_start:
switch ((char)opt) {
case 'R':
- display_region = TRUE;
+ dump_opts.display_region = TRUE;
region_output = TRUE;
break;
case 'B':
- display_bb = TRUE;
+ dump_opts.display_bb = TRUE;
last_was_dset = FALSE;
break;
case 'n':
- display_fi = TRUE;
+ dump_opts.display_fi = TRUE;
last_was_dset = FALSE;
if (opt_arg != NULL)
h5trav_set_verbose(HDatoi(opt_arg));
break;
case 'p':
- display_dcpl = TRUE;
+ dump_opts.display_dcpl = TRUE;
break;
case 'y':
- display_ai = FALSE;
+ dump_opts.display_ai = FALSE;
break;
case 'e':
- display_escape = TRUE;
+ dump_opts.display_escape = TRUE;
break;
case 'H':
- display_data = FALSE;
- display_attr_data = FALSE;
+ dump_opts.display_data = FALSE;
+ dump_opts.display_attr_data = FALSE;
last_was_dset = FALSE;
break;
case 'A':
if (opt_arg != NULL) {
if(0 == HDatoi(opt_arg))
- include_attrs = FALSE;
+ dump_opts.include_attrs = FALSE;
}
else {
- display_data = FALSE;
- display_attr_data = TRUE;
+ dump_opts.display_data = FALSE;
+ dump_opts.display_attr_data = TRUE;
last_was_dset = FALSE;
}
break;
case 'i':
- display_oid = TRUE;
+ dump_opts.display_oid = TRUE;
last_was_dset = FALSE;
break;
case 'r':
- display_char = TRUE;
+ dump_opts.display_char = TRUE;
break;
case 'V':
print_version(h5tools_getprogname());
@@ -955,7 +955,7 @@ parse_start:
}
break;
case 'N':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -967,7 +967,7 @@ parse_start:
last_was_dset = FALSE;
break;
case 'a':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -979,7 +979,7 @@ parse_start:
last_was_dset = FALSE;
break;
case 'd':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -996,7 +996,7 @@ parse_start:
driver_name_g = opt_arg;
break;
case 'g':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -1008,7 +1008,7 @@ parse_start:
last_was_dset = FALSE;
break;
case 'l':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -1020,7 +1020,7 @@ parse_start:
last_was_dset = FALSE;
break;
case 't':
- display_all = 0;
+ dump_opts.display_all = 0;
for (i = 0; i < argc; i++)
if (!hand[i].func) {
@@ -1047,13 +1047,13 @@ parse_start:
}
}
else {
- if(display_attr_data && !display_data) {
+ if(dump_opts.display_attr_data && !dump_opts.display_data) {
if (h5tools_set_attr_output_file(opt_arg, 0) < 0) {
usage(h5tools_getprogname());
goto error;
}
}
- if(display_data || display_all) {
+ if(dump_opts.display_data || dump_opts.display_all) {
if (h5tools_set_data_output_file(opt_arg, 0) < 0) {
usage(h5tools_getprogname());
goto error;
@@ -1061,7 +1061,7 @@ parse_start:
}
}
- usingdasho = TRUE;
+ dump_opts.usingdasho = TRUE;
last_was_dset = FALSE;
outfname_g = opt_arg;
break;
@@ -1111,14 +1111,14 @@ parse_start:
usage(h5tools_getprogname());
goto error;
}
- display_packed_bits = TRUE;
+ dump_opts.display_packed_bits = TRUE;
break;
case 'v':
- display_vds_first = TRUE;
+ dump_opts.display_vds_first = TRUE;
break;
case 'G':
- vds_gap_size = HDatoi(opt_arg);
- if (vds_gap_size < 0) {
+ dump_opts.vds_gap_size = HDatoi(opt_arg);
+ if (dump_opts.vds_gap_size < 0) {
usage(h5tools_getprogname());
goto error;
}
@@ -1255,7 +1255,7 @@ end_collect:
enable_error_stack = 1;
break;
case 'C':
- disable_compact_subset = TRUE;
+ dump_opts.disable_compact_subset = TRUE;
break;
case 'h':
usage(h5tools_getprogname());
@@ -1357,14 +1357,10 @@ main(int argc, const char *argv[])
hid_t fid = H5I_INVALID_HID;
hid_t gid = H5I_INVALID_HID;
hid_t fapl_id = H5P_DEFAULT;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
H5O_info2_t oi;
struct handler_t *hand = NULL;
int i;
unsigned u;
- void *edata;
- void *tools_edata;
char *fname = NULL;
h5tools_setprogname(PROGRAMNAME);
@@ -1373,17 +1369,9 @@ main(int argc, const char *argv[])
dump_function_table = &ddl_function_table;
dump_indent = 0;
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
if((hand = parse_command_line(argc, argv))==NULL) {
goto done;
}
@@ -1394,34 +1382,29 @@ main(int argc, const char *argv[])
goto done;
}
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
-
/* Check for conflicting options */
if (doxml_g) {
- if (!display_all) {
+ if (!dump_opts.display_all) {
error_msg("option \"%s\" not available for XML\n", "to display selected objects");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
- else if (display_bb) {
+ else if (dump_opts.display_bb) {
error_msg("option \"%s\" not available for XML\n", "--boot-block");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
- else if (display_oid == 1) {
+ else if (dump_opts.display_oid == 1) {
error_msg("option \"%s\" not available for XML\n", "--object-ids");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
- else if (display_char == TRUE) {
+ else if (dump_opts.display_char == TRUE) {
error_msg("option \"%s\" not available for XML\n", "--string");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
- else if (usingdasho) {
+ else if (dump_opts.usingdasho) {
error_msg("option \"%s\" not available for XML\n", "--output");
h5tools_setstatus(EXIT_FAILURE);
goto done;
@@ -1439,6 +1422,10 @@ main(int argc, const char *argv[])
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
+
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* Initialize indexing options */
h5trav_set_index(sort_by, sort_order);
@@ -1584,7 +1571,7 @@ main(int argc, const char *argv[])
}
if (!doxml_g) {
- if (display_fi) {
+ if (dump_opts.display_fi) {
PRINTVALSTREAM(rawoutstream, "\n");
dump_fcontents(fid);
end_obj(h5tools_dump_header_format->fileend,h5tools_dump_header_format->fileblockend);
@@ -1592,11 +1579,11 @@ main(int argc, const char *argv[])
goto done;
}
- if (display_bb)
+ if (dump_opts.display_bb)
dump_fcpl(fid);
}
- if(display_all) {
+ if(dump_opts.display_all) {
if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) {
error_msg("unable to open root group\n");
h5tools_setstatus(EXIT_FAILURE);
@@ -1661,9 +1648,6 @@ main(int argc, const char *argv[])
/* To Do: clean up XML table */
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
-
leave(h5tools_getstatus());
done:
@@ -1693,9 +1677,6 @@ done:
/* To Do: clean up XML table */
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
-
leave(h5tools_getstatus());
} /* main */
diff --git a/tools/src/h5dump/h5dump.h b/tools/src/h5dump/h5dump.h
index ca1fef6..548af09 100644
--- a/tools/src/h5dump/h5dump.h
+++ b/tools/src/h5dump/h5dump.h
@@ -52,8 +52,8 @@ typedef struct h5dump_table_list_t {
h5dump_table_list_t table_list = {0, 0, NULL};
table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL;
-unsigned dump_indent = 0; /*how far in to indent the line */
+unsigned dump_indent = 0; /* how far in to indent the line */
int unamedtype = 0; /* shared datatype with no name */
hbool_t hit_elink = FALSE; /* whether we have traversed an external link */
size_t prefix_len = 1024;
@@ -61,23 +61,26 @@ char *prefix = NULL;
const char *fp_format = NULL;
/* things to display or which are set via command line parameters */
-int display_all = TRUE;
-int display_oid = FALSE;
-int display_data = TRUE;
-int display_attr_data = TRUE;
-int display_char = FALSE; /*print 1-byte numbers as ASCII */
-int usingdasho = FALSE;
-int display_bb = FALSE; /*superblock */
-int display_dcpl = FALSE; /*dcpl */
-int display_fi = FALSE; /*file index */
-int display_ai = TRUE; /*array index */
-int display_escape = FALSE; /*escape non printable characters */
-int display_region = FALSE; /*print region reference data */
-int disable_compact_subset= FALSE; /* disable compact form of subset notation */
-int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
-int include_attrs = TRUE; /* Display attributes */
-int display_vds_first = FALSE; /* vds display to all by default*/
-int vds_gap_size = 0; /* vds skip missing files default is none */
+typedef struct {
+ int display_all;
+ int display_oid;
+ int display_data;
+ int display_attr_data;
+ int display_char; /* print 1-byte numbers as ASCII */
+ int usingdasho;
+ int display_bb; /* superblock */
+ int display_dcpl; /* dcpl */
+ int display_fi; /* file index */
+ int display_ai; /* array index */
+ int display_escape; /* escape non printable characters */
+ int display_region; /* print region reference data */
+ int disable_compact_subset; /* disable compact form of subset notation */
+ int display_packed_bits; /* print 1-8 byte numbers as packed bits */
+ int include_attrs; /* Display attributes */
+ int display_vds_first; /* vds display to all by default */
+ int vds_gap_size; /* vds skip missing files default is none */
+} dump_opt_t;
+dump_opt_t dump_opts = {TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, 0};
#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
#define PACKED_BITS_SIZE_MAX (8*sizeof(long long)) /* Maximum bits size of integer types of packed-bits */
diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c
index 364cdcd..ce3643c 100644
--- a/tools/src/h5dump/h5dump_ddl.c
+++ b/tools/src/h5dump/h5dump_ddl.c
@@ -103,13 +103,13 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
ctx.cur_column = dump_indent;
- ctx.display_index = display_ai;
- ctx.display_char = display_char;
+ ctx.display_index = dump_opts.display_ai;
+ ctx.display_char = dump_opts.display_char;
attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
- oid_output = display_oid;
- data_output = display_data;
- attr_data_output = display_attr_data;
+ oid_output = dump_opts.display_oid;
+ data_output = dump_opts.display_data;
+ attr_data_output = dump_opts.display_attr_data;
string_dataformat = *outputformat;
@@ -125,7 +125,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
h5dump_type_table = type_table;
@@ -185,7 +185,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATT
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
/* Build the object's path name */
@@ -242,16 +242,16 @@ dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5_ATT
break;
case H5O_TYPE_DATASET:
- if(display_data) {
+ if(dump_opts.display_data) {
if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
error_msg("error in creating default access property list ID\n");
}
- if (display_vds_first) {
+ if (dump_opts.display_vds_first) {
if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
error_msg("error in setting access property list ID, virtual_view\n");
}
- if (vds_gap_size > 0) {
- if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ if (dump_opts.vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0)
error_msg("error in setting access property list ID, virtual_printf_gap\n");
}
}
@@ -565,7 +565,7 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags)
{
/* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
in the group for attributes, then, sort by creation order, otherwise by name */
- if(include_attrs) {
+ if(dump_opts.include_attrs) {
if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
error_msg("error getting attribute information\n");
@@ -642,7 +642,7 @@ dump_named_datatype(hid_t tid, const char *name)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
if ((tcpl_id = H5Tget_create_plist(tid)) < 0) {
@@ -795,7 +795,7 @@ dump_group(hid_t gid, const char *name)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
ctx.need_prefix = TRUE;
@@ -831,7 +831,7 @@ dump_group(hid_t gid, const char *name)
}
} /* end if */
- if(display_oid)
+ if(dump_opts.display_oid)
h5tools_dump_oid(rawoutstream, outputformat, &ctx, gid);
h5tools_dump_comment(rawoutstream, outputformat, &ctx, gid);
@@ -926,7 +926,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
if ((dcpl_id = H5Dget_create_plist(did)) < 0) {
@@ -967,11 +967,11 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space);
H5Sclose(space);
- if(display_oid) {
+ if(dump_opts.display_oid) {
h5tools_dump_oid(rawoutstream, outputformat, &ctx, did);
}
- if(display_dcpl) {
+ if(dump_opts.display_dcpl) {
h5dump_type_table = type_table;
h5tools_dump_dcpl(rawoutstream, outputformat, &ctx, dcpl_id, type, did);
h5dump_type_table = NULL;
@@ -979,16 +979,16 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
H5Pclose(dcpl_id);
ctx.sset = sset;
- ctx.display_index = display_ai;
- ctx.display_char = display_char;
- if(display_data) {
+ ctx.display_index = dump_opts.display_ai;
+ ctx.display_char = dump_opts.display_char;
+ if(dump_opts.display_data) {
unsigned data_loop = 1;
unsigned u;
- if(display_packed_bits)
+ if(dump_opts.display_packed_bits)
data_loop = packed_bits_num;
for(u = 0; u < data_loop; u++) {
- if(display_packed_bits) {
+ if(dump_opts.display_packed_bits) {
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
/* Render the element */
@@ -1091,7 +1091,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
HDmemset(&ctx, 0, sizeof(ctx));
@@ -1099,7 +1099,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
ctx.cur_column = dump_indent;
ctx.sset = sset;
ctx.display_index = display_index;
- ctx.display_char = display_char;
+ ctx.display_char = dump_opts.display_char;
if(obj_data == DATASET_DATA)
print_dataset = TRUE;
@@ -1527,8 +1527,8 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent / COL;
ctx.cur_column = dump_indent;
- ctx.display_index = display_ai;
- ctx.display_char = display_char;
+ ctx.display_index = dump_opts.display_ai;
+ ctx.display_char = dump_opts.display_char;
string_dataformat = *outputformat;
@@ -1544,7 +1544,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/");
@@ -1583,9 +1583,9 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5
} /* end if */
attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
- oid_output = display_oid;
- data_output = display_data;
- attr_data_output = display_attr_data;
+ oid_output = dump_opts.display_oid;
+ data_output = dump_opts.display_data;
+ attr_data_output = dump_opts.display_attr_data;
h5dump_type_table = type_table;
h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id);
@@ -1637,16 +1637,16 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
struct subset_t *sset = (struct subset_t *)data;
const char *real_name = display_name ? display_name : dset;
- if(display_data) {
+ if(dump_opts.display_data) {
if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
error_msg("error in creating default access property list ID\n");
}
- if (display_vds_first) {
+ if (dump_opts.display_vds_first) {
if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
error_msg("error in setting access property list ID, virtual_view\n");
}
- if (vds_gap_size > 0) {
- if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ if (dump_opts.vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0)
error_msg("error in setting access property list ID, virtual_printf_gap\n");
}
}
diff --git a/tools/src/h5dump/h5dump_extern.h b/tools/src/h5dump/h5dump_extern.h
index 00d3bd2..c615621 100644
--- a/tools/src/h5dump/h5dump_extern.h
+++ b/tools/src/h5dump/h5dump_extern.h
@@ -50,32 +50,35 @@ typedef struct h5dump_table_list_t {
extern h5dump_table_list_t table_list;
extern table_t *group_table, *dset_table, *type_table;
-extern unsigned dump_indent; /*how far in to indent the line */
-extern int unamedtype; /* shared datatype with no name */
-extern hbool_t hit_elink; /* whether we have traversed an external link */
+extern unsigned dump_indent; /* how far in to indent the line */
+extern int unamedtype; /* shared datatype with no name */
+extern hbool_t hit_elink; /* whether we have traversed an external link */
extern size_t prefix_len;
extern char *prefix;
extern const char *fp_format;
/* things to display or which are set via command line parameters */
-extern int display_all;
-extern int display_oid;
-extern int display_data;
-extern int display_attr_data;
-extern int display_char; /*print 1-byte numbers as ASCII */
-extern int usingdasho;
-extern int display_bb; /*superblock */
-extern int display_dcpl; /*dcpl */
-extern int display_fi; /*file index */
-extern int display_ai; /*array index */
-extern int display_escape; /*escape non printable characters */
-extern int display_region; /*print region reference data */
-extern int disable_compact_subset; /* disable compact form of subset notation */
-extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/
-extern int include_attrs; /* Display attributes */
-extern int display_vds_first; /* vds display to first missing */
-extern int vds_gap_size; /* vds skip missing files */
+typedef struct {
+ int display_all;
+ int display_oid;
+ int display_data;
+ int display_attr_data;
+ int display_char; /* print 1-byte numbers as ASCII */
+ int usingdasho;
+ int display_bb; /* superblock */
+ int display_dcpl; /* dcpl */
+ int display_fi; /* file index */
+ int display_ai; /* array index */
+ int display_escape; /* escape non printable characters */
+ int display_region; /* print region reference data */
+ int disable_compact_subset; /* disable compact form of subset notation */
+ int display_packed_bits; /* print 1-8 byte numbers as packed bits */
+ int include_attrs; /* Display attributes */
+ int display_vds_first; /* vds display to all by default */
+ int vds_gap_size; /* vds skip missing files default is none */
+} dump_opt_t;
+extern dump_opt_t dump_opts;
#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c
index 7086388..696841d 100644
--- a/tools/src/h5dump/h5dump_xml.c
+++ b/tools/src/h5dump/h5dump_xml.c
@@ -162,7 +162,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info2_t *linfo, void H5
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
/* Build the object's path name */
@@ -888,7 +888,7 @@ xml_print_datatype(hid_t type, unsigned in_group)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
if(!in_group && H5Tcommitted(type) > 0) {
@@ -1538,7 +1538,7 @@ xml_dump_datatype(hid_t type)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
ctx.indent_level++;
@@ -1669,7 +1669,7 @@ xml_dump_dataspace(hid_t space)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
ctx.indent_level++;
@@ -1992,7 +1992,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
ctx.need_prefix = TRUE;
@@ -2014,7 +2014,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED
ctx.indent_level++;
dump_indent += COL;
- if (display_attr_data && space_type != H5S_NULL) {
+ if (dump_opts.display_attr_data && space_type != H5S_NULL) {
switch (H5Tget_class(type)) {
case H5T_INTEGER:
case H5T_FLOAT:
@@ -2293,7 +2293,7 @@ xml_dump_named_datatype(hid_t type, const char *name)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
dtxid = (char *)HDmalloc((size_t)100);
@@ -2506,7 +2506,7 @@ xml_dump_group(hid_t gid, const char *name)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
if(HDstrcmp(name, "/") == 0) {
@@ -2889,7 +2889,7 @@ xml_print_refs(hid_t did, int source)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
for (i = 0; i < (hsize_t)ssiz; i++) {
@@ -3039,7 +3039,7 @@ xml_print_strs(hid_t did, int source)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
for (i = 0; i < (hsize_t)ssiz; i++) {
@@ -3151,7 +3151,7 @@ check_filters(hid_t dcpl)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
nfilt = H5Pget_nfilters(dcpl);
@@ -3287,7 +3287,7 @@ xml_dump_fill_value(hid_t dcpl, hid_t type)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
ctx.indent_level++;
@@ -3627,7 +3627,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *ss
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
xml_name_to_XID(did, tmp, rstr, 100, 1);
@@ -3916,7 +3916,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *ss
dump_indent -= COL;
tempi = H5Dget_storage_size(did);
- if (display_data && (tempi > 0)) {
+ if (dump_opts.display_data && (tempi > 0)) {
switch (H5Tget_class(type)) {
case H5T_INTEGER:
case H5T_FLOAT:
@@ -4172,7 +4172,7 @@ xml_print_enum(hid_t type)
else
string_dataformat.line_ncols = h5tools_nCols;
- string_dataformat.do_escape = display_escape;
+ string_dataformat.do_escape = dump_opts.display_escape;
outputformat = &string_dataformat;
nmembs = (unsigned)H5Tget_nmembers(type);
diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c
index 2c4cf41..d63f36f 100644
--- a/tools/src/h5format_convert/h5format_convert.c
+++ b/tools/src/h5format_convert/h5format_convert.c
@@ -64,7 +64,7 @@ static struct long_options l_opts[] = {
{ NULL, 0, '\0' }
};
-
+
/*-------------------------------------------------------------------------
* Function: usage
*
@@ -109,7 +109,7 @@ static void usage(const char *prog)
* Purpose: parse command line input
*
* Return: Success: 0
- * Failure: 1
+ * Failure: 1
*
*-------------------------------------------------------------------------
*/
@@ -127,47 +127,47 @@ parse_command_line(int argc, const char **argv)
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
- switch((char) opt) {
- case 'h':
- usage(h5tools_getprogname());
- h5tools_setstatus(EXIT_SUCCESS);
- goto error;
-
- case 'V':
- print_version(h5tools_getprogname());
- h5tools_setstatus(EXIT_SUCCESS);
- goto error;
-
- case 'v':
- verbose_g = TRUE;
- break;
-
- case 'd': /* -d dname */
- if(opt_arg != NULL && *opt_arg)
- dname_g = HDstrdup(opt_arg);
- if(dname_g == NULL) {
- h5tools_setstatus(EXIT_FAILURE);
- error_msg("No dataset name\n", opt_arg);
- usage(h5tools_getprogname());
- goto error;
- }
- dset_g = TRUE;
- break;
-
- case 'n': /* -n */
- noop_g = TRUE;
- break;
-
- case 'E':
- enable_error_stack = 1;
- break;
-
- default:
- h5tools_setstatus(EXIT_FAILURE);
- usage(h5tools_getprogname());
- goto error;
- break;
- } /* switch */
+ switch((char) opt) {
+ case 'h':
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto error;
+
+ case 'V':
+ print_version(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto error;
+
+ case 'v':
+ verbose_g = TRUE;
+ break;
+
+ case 'd': /* -d dname */
+ if(opt_arg != NULL && *opt_arg)
+ dname_g = HDstrdup(opt_arg);
+ if(dname_g == NULL) {
+ h5tools_setstatus(EXIT_FAILURE);
+ error_msg("No dataset name\n", opt_arg);
+ usage(h5tools_getprogname());
+ goto error;
+ }
+ dset_g = TRUE;
+ break;
+
+ case 'n': /* -n */
+ noop_g = TRUE;
+ break;
+
+ case 'E':
+ enable_error_stack = 1;
+ break;
+
+ default:
+ h5tools_setstatus(EXIT_FAILURE);
+ usage(h5tools_getprogname());
+ goto error;
+ break;
+ } /* switch */
} /* while */
if (argc <= opt_ind) {
@@ -185,7 +185,7 @@ error:
return(-1); ;
} /* parse_command_line() */
-
+
/*-------------------------------------------------------------------------
* Function: leave
*
@@ -207,17 +207,17 @@ leave(int ret)
* Function: convert()
*
* Purpose: To downgrade a dataset's indexing type or layout version:
- * For chunked:
- * Downgrade the chunk indexing type to version 1 B-tree
- * If type is already version 1 B-tree, no further action
- * For compact/contiguous:
- * Downgrade the layout version from 4 to 3
- * If version is already <= 3, no further action
- * For virtual:
- * No further action
+ * For chunked:
+ * Downgrade the chunk indexing type to version 1 B-tree
+ * If type is already version 1 B-tree, no further action
+ * For compact/contiguous:
+ * Downgrade the layout version from 4 to 3
+ * If version is already <= 3, no further action
+ * For virtual:
+ * No further action
*
* Return: Success: 0
- * Failure: 1
+ * Failure: 1
*
*-------------------------------------------------------------------------
*/
@@ -312,7 +312,7 @@ convert(hid_t fid, const char *dname)
}
if(verbose_g)
- HDfprintf(stdout, "Converting the dataset...\n");
+ HDfprintf(stdout, "Converting the dataset...\n");
/* Downgrade the dataset */
if(H5Dformat_convert(did) < 0) {
@@ -377,7 +377,7 @@ convert_dsets_cb(const char *path, const H5O_info2_t *oi, const char *already_vi
if(verbose_g)
HDfprintf(stdout, "Going to process dataset:%s...\n", path);
if(convert(fid, path) < 0)
- goto error;
+ goto error;
} /* end if */
} /* end if */
@@ -387,62 +387,61 @@ error:
return -1;
} /* end convert_dsets_cb() */
-
+
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: To convert the chunk indexing type of a dataset in a file to
- * version 1 B-tree.
+ * version 1 B-tree.
*
* Return: Success: 0
- * Failure: 1
+ * Failure: 1
*
*-------------------------------------------------------------------------
*/
int
main(int argc, const char *argv[])
{
- H5E_auto2_t func;
- void *edata;
hid_t fid = H5I_INVALID_HID;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
/* Parse command line options */
if(parse_command_line(argc, argv) < 0)
- goto done;
+ goto done;
else if(verbose_g)
- HDfprintf(stdout, "Process command line options\n");
+ HDfprintf(stdout, "Process command line options\n");
if(noop_g && verbose_g)
- HDfprintf(stdout, "It is noop...\n");
+ HDfprintf(stdout, "It is noop...\n");
+
+ /* enable error reporting if command line option */
+ h5tools_error_report();
/* Open the HDF5 file */
if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0)) < 0) {
- error_msg("unable to open file \"%s\"\n", fname_g);
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- } else if(verbose_g)
- HDfprintf(stdout, "Open the file %s\n", fname_g);
+ error_msg("unable to open file \"%s\"\n", fname_g);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if(verbose_g)
+ HDfprintf(stdout, "Open the file %s\n", fname_g);
if(dset_g) { /* Convert a specified dataset in the file */
- if(verbose_g)
- HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g);
- if(convert(fid, dname_g) < 0)
- goto done;
- } else { /* Convert all datasets in the file */
- if(verbose_g)
- HDfprintf(stdout, "Processing all datasets in the file...\n");
- if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0)
- goto done;
+ if(verbose_g)
+ HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g);
+ if(convert(fid, dname_g) < 0)
+ goto done;
+ }
+ else { /* Convert all datasets in the file */
+ if(verbose_g)
+ HDfprintf(stdout, "Processing all datasets in the file...\n");
+ if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0)
+ goto done;
} /* end else */
if(verbose_g) {
@@ -464,19 +463,20 @@ main(int argc, const char *argv[])
done:
/* Close the file */
if(fid >= 0) {
- if(H5Fclose(fid) < 0) {
- error_msg("unable to close file \"%s\"\n", fname_g);
- h5tools_setstatus(EXIT_FAILURE);
- } else if(verbose_g)
- HDfprintf(stdout, "Close the file\n");
+ if(H5Fclose(fid) < 0) {
+ error_msg("unable to close file \"%s\"\n", fname_g);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else if(verbose_g) {
+ HDfprintf(stdout, "Close the file\n");
+ }
} /* end if */
if(fname_g)
- HDfree(fname_g);
+ HDfree(fname_g);
if(dname_g)
- HDfree(dname_g);
+ HDfree(dname_g);
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(h5tools_getstatus());
} /* end main() */
diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c
index b11fe7f..4a642e0 100644
--- a/tools/src/h5import/h5import.c
+++ b/tools/src/h5import/h5import.c
@@ -3735,8 +3735,8 @@ static int getExternalFilename(struct Input *in, FILE *strm)
return (-1);
}
- in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char));
- (void) HDstrcpy(in->externFilename, temp);
+ in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp) + 1) * sizeof(char));
+ (void) HDstrncpy(in->externFilename, temp, HDstrlen(temp) + 1);
return (0);
}
diff --git a/tools/src/h5jam/h5jam.c b/tools/src/h5jam/h5jam.c
index 009e527..8b61112 100644
--- a/tools/src/h5jam/h5jam.c
+++ b/tools/src/h5jam/h5jam.c
@@ -120,13 +120,6 @@ usage (const char *prog)
static void
leave(int ret)
{
- if (ub_file)
- HDfree (ub_file);
- if (input_file)
- HDfree (input_file);
- if (output_file)
- HDfree (output_file);
-
h5tools_close();
HDexit(ret);
@@ -195,8 +188,6 @@ main (int argc, const char *argv[])
int ufid = -1;
int h5fid = -1;
int ofid = -1;
- void *edata;
- H5E_auto2_t func;
hid_t ifile = H5I_INVALID_HID;
hid_t plist = H5I_INVALID_HID;
herr_t status;
@@ -214,20 +205,20 @@ main (int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
parse_command_line(argc, argv);
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
if (ub_file == NULL) {
/* no user block */
error_msg("missing argument for -u <user_file>.\n");
help_ref_msg(stderr);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
testval = H5Fis_accessible(ub_file, H5P_DEFAULT);
@@ -235,13 +226,15 @@ main (int argc, const char *argv[])
if (testval > 0) {
error_msg("-u <user_file> cannot be HDF5 file, but it appears to be an HDF5 file.\n");
help_ref_msg(stderr);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
if (input_file == NULL) {
error_msg("missing argument for -i <HDF5 file>.\n");
help_ref_msg(stderr);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
testval = H5Fis_accessible(input_file, H5P_DEFAULT);
@@ -249,45 +242,49 @@ main (int argc, const char *argv[])
if (testval <= 0) {
error_msg("Input HDF5 file \"%s\" is not HDF5 format.\n", input_file);
help_ref_msg(stderr);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
ifile = H5Fopen(input_file, H5F_ACC_RDONLY, H5P_DEFAULT);
if (ifile < 0) {
error_msg("Can't open input HDF5 file \"%s\"\n", input_file);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
plist = H5Fget_create_plist(ifile);
if (plist < 0) {
error_msg("Can't get file creation plist for file \"%s\"\n", input_file);
- H5Fclose(ifile);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
status = H5Pget_userblock(plist, &usize);
if (status < 0) {
error_msg("Can't get user block for file \"%s\"\n", input_file);
- H5Pclose(plist);
- H5Fclose(ifile);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
H5Pclose(plist);
+ plist = H5I_INVALID_HID;
H5Fclose(ifile);
+ ifile = H5I_INVALID_HID;
ufid = HDopen(ub_file, O_RDONLY);
if(ufid < 0) {
error_msg("unable to open user block file \"%s\"\n", ub_file);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
res = HDfstat(ufid, &sbuf);
if(res < 0) {
error_msg("Can't stat file \"%s\"\n", ub_file);
- HDclose (ufid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
fsize = (off_t)sbuf.st_size;
@@ -295,16 +292,15 @@ main (int argc, const char *argv[])
h5fid = HDopen(input_file, O_RDONLY);
if(h5fid < 0) {
error_msg("unable to open HDF5 file for read \"%s\"\n", input_file);
- HDclose (ufid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
res = HDfstat(h5fid, &sbuf2);
if(res < 0) {
error_msg("Can't stat file \"%s\"\n", input_file);
- HDclose (h5fid);
- HDclose (ufid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
h5fsize = (hsize_t)sbuf2.st_size;
@@ -314,9 +310,8 @@ main (int argc, const char *argv[])
if (ofid < 0) {
error_msg("unable to open output file \"%s\"\n", output_file);
- HDclose (h5fid);
- HDclose (ufid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
}
else {
@@ -324,9 +319,8 @@ main (int argc, const char *argv[])
if (ofid < 0) {
error_msg("unable to create output file \"%s\"\n", output_file);
- HDclose (h5fid);
- HDclose (ufid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
}
@@ -365,12 +359,11 @@ main (int argc, const char *argv[])
/* pad the ub */
if(write_pad(ofid, where, &where) < 0) {
error_msg("Can't pad file \"%s\"\n", output_file);
- HDclose (h5fid);
- HDclose (ufid);
- HDclose (ofid);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
} /* end if */
+done:
if(ub_file)
HDfree(ub_file);
if(input_file)
@@ -378,6 +371,11 @@ main (int argc, const char *argv[])
if(output_file)
HDfree(output_file);
+ if(plist >= 0)
+ H5Pclose(plist);
+ if(ifile >= 0)
+ H5Fclose(ifile);
+
if(ufid >= 0)
HDclose(ufid);
if(h5fid >= 0)
@@ -385,7 +383,7 @@ main (int argc, const char *argv[])
if(ofid >= 0)
HDclose(ofid);
- return h5tools_getstatus();
+ leave(h5tools_getstatus());
}
/*-------------------------------------------------------------------------
diff --git a/tools/src/h5jam/h5unjam.c b/tools/src/h5jam/h5unjam.c
index 203522b..b48e2c1 100644
--- a/tools/src/h5jam/h5unjam.c
+++ b/tools/src/h5jam/h5unjam.c
@@ -185,6 +185,13 @@ done:
return EXIT_FAILURE;
}
+static void
+leave(int ret)
+{
+ h5tools_close();
+ HDexit(ret);
+}
+
/*-------------------------------------------------------------------------
* Function: main
*
@@ -197,8 +204,6 @@ done:
int
main(int argc, const char *argv[])
{
- void *edata;
- H5E_auto2_t func;
hid_t ifile = H5I_INVALID_HID;
hid_t plist = H5I_INVALID_HID;
off_t fsize;
@@ -211,16 +216,15 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
if(EXIT_FAILURE == parse_command_line(argc, argv))
goto done;
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
if (input_file == NULL) {
/* no user block */
error_msg("missing argument for HDF5 file input.\n");
@@ -319,9 +323,7 @@ done:
HDfree(ub_file);
}
- h5tools_close();
-
- return h5tools_getstatus();
+ leave(h5tools_getstatus());
}
/*-------------------------------------------------------------------------
diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c
index 08a561e..1b294da 100644
--- a/tools/src/h5ls/h5ls.c
+++ b/tools/src/h5ls/h5ls.c
@@ -1298,230 +1298,6 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind)
h5tools_str_append(buffer,"%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), (unsigned)data_class);
}
-/*
- *
- */
-static void
-dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims)
-{
- hid_t new_obj_id = H5I_INVALID_HID;
- hid_t new_obj_sid = H5I_INVALID_HID;
- hsize_t elmt_counter = 0; /*counts the # elements printed. */
- size_t ncols = 80; /* available output width */
- int i;
- hsize_t curr_pos = 0; /* total data element position */
- h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t datactx; /* print context */
-
- H5TOOLS_START_DEBUG("");
-
- datactx = *ctx; /* print context */
- /* Assume entire data space to be printed */
- if (datactx.ndims > 0)
- for (i = 0; (unsigned)i < datactx.ndims; i++)
- datactx.p_min_idx[i] = 0;
- datactx.need_prefix = TRUE;
-
- HDmemset(&buffer, 0, sizeof(h5tools_str_t));
- for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) {
- H5O_type_t obj_type = -1; /* Object type */
- H5R_type_t ref_type; /* Reference type */
-
- H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos);
-
- datactx.need_prefix = TRUE;
- h5tools_str_reset(&buffer);
- H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i);
- h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx);
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims);
-
- ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]);
- switch (ref_type) {
- case H5R_OBJECT1:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed");
- break;
-
- case H5O_TYPE_GROUP:
- case H5O_TYPE_NAMED_DATATYPE:
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed");
- break;
- case H5R_DATASET_REGION1:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION1 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
- break;
- case H5R_OBJECT2:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_GROUP:
- break;
-
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Oclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_OBJECT2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed");
- break;
-
- case H5O_TYPE_NAMED_DATATYPE:
- break;
-
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed");
- break;
- case H5R_DATASET_REGION2:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
-
- if (info->line_ncols > 0)
- ncols = info->line_ncols;
-
- /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
- else {
- if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
- H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.need_prefix = TRUE;
- datactx.indent_level++;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- }
- else {
- H5S_sel_type region_type;
-
- region_type = H5Sget_select_type(new_obj_sid);
- if(region_type == H5S_SEL_POINTS) {
- /* Print point information */
- H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2");
- h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx,
- &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
- }
- else if(region_type == H5S_SEL_HYPERSLABS) {
- /* Print block information */
- H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2");
- h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx,
- &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
- }
- else
- H5TOOLS_INFO("invalid region type");
- } /* end else to if (h5tools_is_zero(... */
- if(H5Sclose(new_obj_sid) < 0)
- H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION2 failed");
- }
- break;
- case H5R_ATTR:
- H5TOOLS_DEBUG("ref_type is H5R_ATTR");
- if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- if(H5Aclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_ATTR failed");
- }
- else {
- H5TOOLS_DEBUG("NULL H5R_ATTR");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.need_prefix = TRUE;
- datactx.indent_level++;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
- }
- break;
- case H5R_BADTYPE:
- case H5R_MAXTYPE:
- default:
- break;
- } /* end switch */
-
- H5TOOLS_DEBUG("finished reference loop:%d",i);
- } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */
-
- h5tools_str_close(&buffer);
-
- PRINTVALSTREAM(stream, "\n");
-
- H5TOOLS_ENDDEBUG("");
-}
-
/*-------------------------------------------------------------------------
* Function: dump_dataset_values
*
@@ -1537,7 +1313,6 @@ dump_dataset_values(hid_t dset)
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
- size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
@@ -1653,13 +1428,9 @@ dump_dataset_values(hid_t dset)
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
- if (ctx.ndims > 0)
- for (i = 0; i < (size_t)ctx.ndims; i++)
- ctx.p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(space, total_size, NULL);
- if (ctx.ndims > 0)
- init_acc_pos(&ctx, total_size);
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
+
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
@@ -1669,7 +1440,9 @@ dump_dataset_values(hid_t dset)
H5TOOLS_INFO("H5Dread reference failed");
H5TOOLS_GOTO_DONE_NO_RET();
}
- dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims);
+ h5tools_dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims);
+
+ PRINTVALSTREAM(rawoutstream, "\n");
HDfree(ref_buf);
}
}
@@ -1707,7 +1480,6 @@ dump_attribute_values(hid_t attr)
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
- size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
@@ -1824,13 +1596,9 @@ dump_attribute_values(hid_t attr)
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
- if (ctx.ndims > 0)
- for (i = 0; i < (size_t)ctx.ndims; i++)
- ctx.p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(space, total_size, NULL);
- if (ctx.ndims > 0)
- init_acc_pos(&ctx, total_size);
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
+
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
@@ -1841,7 +1609,9 @@ dump_attribute_values(hid_t attr)
H5TOOLS_GOTO_DONE_NO_RET();
}
ctx.indent_level++;
- dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims);
+ h5tools_dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims);
+
+ PRINTVALSTREAM(rawoutstream, "\n");
ctx.indent_level--;
HDfree(ref_buf);
}
@@ -2856,10 +2626,6 @@ main(int argc, const char *argv[])
const char *preferred_driver = NULL;
int err_exit = 0;
hid_t fapl_id = H5P_DEFAULT;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
hbool_t custom_vol_fapl = FALSE;
h5tools_vol_info_t vol_info;
@@ -2889,17 +2655,9 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* Initialize fapl info struct */
HDmemset(&vol_info, 0, sizeof(h5tools_vol_info_t));
@@ -3158,6 +2916,9 @@ main(int argc, const char *argv[])
}
} /* end for */
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* If no arguments remain then print a usage message (instead of doing
* absolutely nothing ;-) */
if (argno >= argc) {
@@ -3208,11 +2969,6 @@ main(int argc, const char *argv[])
}
}
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
-
/* Each remaining argument is an hdf5 file followed by an optional slash
* and object name.
*
@@ -3271,7 +3027,6 @@ main(int argc, const char *argv[])
x = oname;
if (NULL == (oname = HDstrdup(oname))) {
HDfprintf(rawerrorstream, "memory allocation failed\n");
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
*x = '\0';
@@ -3316,7 +3071,6 @@ main(int argc, const char *argv[])
h5tools_str_reset(&buffer);
print_obj_name(&buffer, &iter, oname, "**NOT FOUND**");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
} /* end if */
} /* end if */
@@ -3326,7 +3080,6 @@ main(int argc, const char *argv[])
/* Open the object and display it's information */
if (li.type == H5L_TYPE_HARD) {
if (visit_obj(file_id, oname, &iter) < 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
} /* end if(li.type == H5L_TYPE_HARD) */
@@ -3357,12 +3110,10 @@ main(int argc, const char *argv[])
if (fapl_id != H5P_DEFAULT) {
if (0 < H5Pclose(fapl_id)) {
HDfprintf(rawerrorstream, "Error: Unable to set close fapl entry\n\n");
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
}
- H5Eset_auto2(H5E_DEFAULT, func, edata);
if (err_exit)
leave(EXIT_FAILURE);
else
diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c
index f7822ca..0ad61c0 100644
--- a/tools/src/h5repack/h5repack_main.c
+++ b/tools/src/h5repack/h5repack_main.c
@@ -804,10 +804,6 @@ done:
int main(int argc, const char **argv)
{
pack_opt_t options; /*the global options */
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
int parse_ret;
HDmemset(&options, 0, sizeof(pack_opt_t));
@@ -818,14 +814,6 @@ int main(int argc, const char **argv)
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* update hyperslab buffer size from H5TOOLS_BUFSIZE env if exist */
if (h5tools_getenv_update_hyperslab_bufsize() < 0) {
HDprintf("Error occurred while retrieving H5TOOLS_BUFSIZE value\n");
@@ -855,10 +843,8 @@ int main(int argc, const char **argv)
goto done;
}
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
+ /* enable error reporting if command line option */
+ h5tools_error_report();
/* pack it */
if (h5repack(infile, outfile, &options) < 0) {
diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c
index 82fc731..93b7242 100644
--- a/tools/src/h5stat/h5stat.c
+++ b/tools/src/h5stat/h5stat.c
@@ -1786,32 +1786,23 @@ main(int argc, const char *argv[])
iter_t iter;
const char *fname = NULL;
hid_t fid = H5I_INVALID_HID;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
struct handler_t *hand = NULL;
hid_t fapl_id = H5P_DEFAULT;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
HDmemset(&iter, 0, sizeof(iter));
if(parse_command_line(argc, argv, &hand) < 0)
goto done;
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
if (drivername) {
h5tools_vfd_info_t vfd_info;
@@ -1843,11 +1834,6 @@ main(int argc, const char *argv[])
fname = argv[opt_ind];
- if(enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
-
/* Check for filename given */
if(fname) {
hid_t fcpl;
@@ -1952,8 +1938,6 @@ done:
h5tools_setstatus(EXIT_FAILURE);
} /* end if */
- H5Eset_auto2(H5E_DEFAULT, func, edata);
-
leave(h5tools_getstatus());
} /* end main() */
diff --git a/tools/src/misc/h5clear.c b/tools/src/misc/h5clear.c
index b81e2b3..3bd570a 100644
--- a/tools/src/misc/h5clear.c
+++ b/tools/src/misc/h5clear.c
@@ -266,14 +266,9 @@ main (int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable the HDF5 library's error reporting */
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* initialize h5tools lib */
h5tools_init();
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* Parse command line options */
if(parse_command_line(argc, argv) < 0)
goto done;
@@ -281,6 +276,9 @@ main (int argc, const char *argv[])
if(fname_g == NULL)
goto done;
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* Print usage/exit if not using at least one of the options */
if(!clear_status_flags && !remove_cache_image &&
!increment_eoa_eof && !print_filesize) {
@@ -387,7 +385,6 @@ main (int argc, const char *argv[])
warn_msg("No cache image in the file\n");
}
-
h5tools_setstatus(EXIT_SUCCESS);
done:
diff --git a/tools/src/misc/h5mkgrp.c b/tools/src/misc/h5mkgrp.c
index cbd6e6d..4d2d2b8 100644
--- a/tools/src/misc/h5mkgrp.c
+++ b/tools/src/misc/h5mkgrp.c
@@ -49,7 +49,7 @@ typedef struct mkgrp_opt_t {
mkgrp_opt_t params_g; /* Command line parameter settings */
-
+
/*-------------------------------------------------------------------------
* Function: leave
*
@@ -81,7 +81,7 @@ leave(int ret)
HDexit(ret);
} /* end leave() */
-
+
/*-------------------------------------------------------------------------
* Function: usage
*
@@ -113,7 +113,7 @@ usage(const char *prog)
PRINTVALSTREAM(rawoutstream, "\n");
} /* end usage() */
-
+
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
@@ -248,7 +248,7 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options)
return 0;
} /* parse_command_line() */
-
+
/*-------------------------------------------------------------------------
* Function: main
*
@@ -268,9 +268,6 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable the HDF5 library's error reporting */
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
@@ -289,6 +286,9 @@ main(int argc, const char *argv[])
leave(EXIT_FAILURE);
}
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* Check for creating groups with new format version */
if(params_g.latest) {
/* Set the "use the latest version of the format" bounds */
diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake
index 3d9c6f5..74e3929 100644
--- a/tools/test/h5diff/CMakeTests.cmake
+++ b/tools/test/h5diff/CMakeTests.cmake
@@ -66,8 +66,10 @@
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/non_comparables2.h5
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/tudfilter.h5
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/tudfilter2.h5
- ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/diff_strings1.h5
- ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/diff_strings2.h5
+ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_strings1.h5
+ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_strings2.h5
+ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps1.h5
+ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps2.h5
# tools/testfiles/vds
${HDF5_TOOLS_DIR}/testfiles/vds/1_a.h5
${HDF5_TOOLS_DIR}/testfiles/vds/1_b.h5
@@ -302,6 +304,7 @@
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v2.txt
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_v3.txt
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_vlstr.txt
+ ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_eps.txt
)
set (LIST_WIN_TEST_FILES
@@ -539,8 +542,11 @@
set (ATTR_VERBOSE_LEVEL_FILE1 h5diff_attr_v_level1.h5)
set (ATTR_VERBOSE_LEVEL_FILE2 h5diff_attr_v_level2.h5)
# strings
- set (STRINGS1 diff_strings1.h5)
- set (STRINGS2 diff_strings2.h5)
+ set (STRINGS1 h5diff_strings1.h5)
+ set (STRINGS2 h5diff_strings2.h5)
+ # epsilon
+ set (EPS1 h5diff_eps1.h5)
+ set (EPS2 h5diff_eps2.h5)
# VDS tests
set (FILEV1 1_vds.h5)
@@ -926,6 +932,8 @@
h5diff_v3.out.err
h5diff_vlstr.out
h5diff_vlstr.out.err
+ h5diff_eps.out
+ h5diff_eps.out.err
)
set_tests_properties (H5DIFF-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
if (last_test)
@@ -1107,6 +1115,9 @@ ADD_H5_TEST (h5diff_609 0 -d 200 ${FILE1} ${FILE2} g1/dset3 g1/dset4)
# 6.10: number smaller than smallest difference
ADD_H5_TEST (h5diff_610 1 -d 1 ${FILE1} ${FILE2} g1/dset3 g1/dset4)
+# eps: number smaller than epsilon
+ADD_H5_TEST (h5diff_eps 0 -v3 -d 1e-16 ${EPS1} ${EPS2})
+
# ##############################################################################
# # -p
# ##############################################################################
@@ -1492,9 +1503,9 @@ ADD_H5_TEST (h5diff_484 0 -v --exclude-path "/dset3" ${EXCLUDE_FILE1_1} ${EXCLUD
# Only one file contains unique objs. Common objs are same.
# (HDFFV-7837)
#
-ADD_H5_TEST (h5diff_485 0 -v --exclude-path "/group1" h5diff_exclude3-1.h5 h5diff_exclude3-2.h5)
-ADD_H5_TEST (h5diff_486 0 -v --exclude-path "/group1" h5diff_exclude3-2.h5 h5diff_exclude3-1.h5)
-ADD_H5_TEST (h5diff_487 1 -v --exclude-path "/group1/dset" h5diff_exclude3-1.h5 h5diff_exclude3-2.h5)
+ADD_H5_TEST (h5diff_485 0 -v --exclude-path "/group1" ${EXCLUDE_FILE3_1} ${EXCLUDE_FILE3_2})
+ADD_H5_TEST (h5diff_486 0 -v --exclude-path "/group1" ${EXCLUDE_FILE3_2} ${EXCLUDE_FILE3_1})
+ADD_H5_TEST (h5diff_487 1 -v --exclude-path "/group1/dset" ${EXCLUDE_FILE3_1} ${EXCLUDE_FILE3_2})
# ##############################################################################
# # diff various multiple vlen and fixed strings in a compound type dataset
@@ -1528,8 +1539,6 @@ ADD_H5_TEST (h5diff_646 1 -v --use-system-epsilon -p 0.05 ${FILE1} ${FILE2} /g1/
# ##############################################################################
# # Test array variances
# ##############################################################################
-#
-# Test with -d , -p and --use-system-epsilon.
ADD_H5_TEST (h5diff_800 1 -v ${FILE7} ${FILE8} /g1/array /g1/array)
ADD_H5_TEST (h5diff_801 1 -v ${FILE7} ${FILE8A} /g1/array /g1/array)
diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c
index 1d5354f..bdc2ddc 100644
--- a/tools/test/h5diff/h5diffgentest.c
+++ b/tools/test/h5diff/h5diffgentest.c
@@ -94,8 +94,11 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024);
#define NON_COMPARBLES1 "non_comparables1.h5"
#define NON_COMPARBLES2 "non_comparables2.h5"
/* string dataset and attribute */
-#define DIFF_STRINGS1 "diff_strings1.h5"
-#define DIFF_STRINGS2 "diff_strings2.h5"
+#define DIFF_STRINGS1 "h5diff_strings1.h5"
+#define DIFF_STRINGS2 "h5diff_strings2.h5"
+/* double dataset and epsilon */
+#define DIFF_EPS1 "h5diff_eps1.h5"
+#define DIFF_EPS2 "h5diff_eps2.h5"
#define UIMAX 4294967295u /*Maximum value for a variable of type unsigned int */
#define STR_SIZE 3
@@ -110,7 +113,7 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024);
/* Error macros */
#define AT() HDprintf("ERROR at %s:%d in %s()...\n", __FILE__, __LINE__, FUNC);
-#define PROGRAM_ERROR {AT(); goto error;}
+#define PROGRAM_ERROR do {AT(); goto error;} while(0)
/* A UD link traversal function. Shouldn't actually be called. */
static hid_t
@@ -172,6 +175,7 @@ static void test_comps_vlen_arry(const char *fname, const char *dset,
static void test_data_nocomparables(const char *fname, int diff);
static void test_objs_nocomparables(const char *fname1, const char *fname2);
static void test_objs_strings(const char *fname, const char *fname2);
+static void test_double_epsilon(const char *fname1, const char *fname2);
/* called by test_attributes() and test_datasets() */
static void write_attr_strings(hid_t loc_id, const char* dset_name, hid_t fid, int make_diffs);
@@ -288,6 +292,9 @@ int main(void)
/* string dataset and attribute. HDFFV-10028 */
test_objs_strings(DIFF_STRINGS1, DIFF_STRINGS2);
+ /* double dataset and epsilion. HDFFV-10897 */
+ test_double_epsilon(DIFF_EPS1, DIFF_EPS2);
+
return EXIT_SUCCESS;
}
@@ -4928,73 +4935,73 @@ test_objs_nocomparables(const char *fname1, const char *fname2)
*------------------------------------------------------------------------*/
/* file1 */
if((fid1 = H5Fopen(fname1, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* file2 */
if((fid2 = H5Fopen(fname2, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/*-----------------------------------------------------------------------
* in file1 : add member objects
*------------------------------------------------------------------------*/
/* parent group */
if((topgid1 = H5Gcreate2(fid1, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* dataset */
if(write_dset(topgid1, 1, dims, "obj1", H5T_NATIVE_INT, data1) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* group */
if((gid1 = H5Gcreate2(topgid1, "obj2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* committed type */
if((tid1 = H5Tcopy(H5T_NATIVE_INT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Tcommit2(topgid1, "obj3", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/*-----------------------------------------------------------------------
* in file2 : add member objects
*------------------------------------------------------------------------*/
/* parent group */
if((topgid2 = H5Gcreate2(fid2, "diffobjtypes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* group */
if((gid2 = H5Gcreate2(topgid2, "obj1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* committed type */
if((tid2 = H5Tcopy(H5T_NATIVE_INT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Tcommit2(topgid2, "obj2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* dataset */
if(write_dset(topgid2, 1, dims, "obj3", H5T_NATIVE_INT, data2) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/*-----------------------------------------------------------------------
* Close IDs
*-----------------------------------------------------------------------*/
if(H5Fclose(fid1) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Fclose(fid2) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Gclose(topgid1) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Gclose(topgid2) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Gclose(gid1) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Gclose(gid2) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Tclose(tid1) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Tclose(tid2) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
return;
@@ -8018,6 +8025,60 @@ out:
return -1;
}
+/*
+ * Function: test_double_epsilion
+ *
+ * Purpose: Create test files to compare data with epsilion
+ */
+static
+void test_double_epsilon(const char *fname1, const char *fname2)
+{
+ hid_t fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID;
+ hsize_t dims1[2] = { 4, 7 };
+ hsize_t dims2[2] = { 4, 7 };
+ double wdata[4][7];
+ int i, j;
+
+ /*-------------------------------------------------------------------------
+ * create two files
+ *-------------------------------------------------------------------------
+ */
+ if ((fid1 = H5Fcreate(fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ PROGRAM_ERROR;
+ if ((fid2 = H5Fcreate(fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ PROGRAM_ERROR;
+
+ /*
+ * Initialize data.
+ */
+ for (i=0; i<4; i++)
+ for (j=0; j<7; j++)
+ wdata[i][j] = 0.0;
+
+ /* dataset */
+ if(write_dset(fid1, 2, dims1, "dataset", H5T_IEEE_F64LE, wdata) < 0)
+ PROGRAM_ERROR;
+
+ /*
+ * Initialize data.
+ */
+ for (i=0; i<4; i++)
+ for (j=0; j<7; j++)
+ wdata[i][j] = (double)1.e-19;
+
+ /* dataset */
+ if(write_dset(fid2, 2, dims1, "dataset", H5T_IEEE_F64LE, wdata) < 0)
+ PROGRAM_ERROR;
+
+error:
+ H5E_BEGIN_TRY {
+ H5Fclose(fid1);
+ H5Fclose(fid2);
+ } H5E_END_TRY;
+
+ return;
+}
+
/*-------------------------------------------------------------------------
* Function: write_attr
*
@@ -8073,22 +8134,22 @@ write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *name, hid_t tid, v
/* create a space */
if((sid = H5Screate_simple(rank, dims, NULL)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* create the dataset */
if((did = H5Dcreate2(loc_id, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* write */
if(buf)
if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
/* close */
if(H5Dclose(did) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
if(H5Sclose(sid) < 0)
- PROGRAM_ERROR
+ PROGRAM_ERROR;
return SUCCEED;
diff --git a/tools/test/h5diff/testfiles/h5diff_10.txt b/tools/test/h5diff/testfiles/h5diff_10.txt
index 0a2fd12..b5ff01a 100644
--- a/tools/test/h5diff/testfiles/h5diff_10.txt
+++ b/tools/test/h5diff/testfiles/h5diff_10.txt
@@ -17,10 +17,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -109,6 +108,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_58_ref.txt b/tools/test/h5diff/testfiles/h5diff_58_ref.txt
index 6fa2299..48a4b33 100644
--- a/tools/test/h5diff/testfiles/h5diff_58_ref.txt
+++ b/tools/test/h5diff/testfiles/h5diff_58_ref.txt
@@ -1,32 +1,32 @@
dataset: </g1/reference2D> and </g1/reference2D>
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
diff --git a/tools/test/h5diff/testfiles/h5diff_600.txt b/tools/test/h5diff/testfiles/h5diff_600.txt
index 55b8da7..f52d8cc 100644
--- a/tools/test/h5diff/testfiles/h5diff_600.txt
+++ b/tools/test/h5diff/testfiles/h5diff_600.txt
@@ -17,10 +17,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -109,6 +108,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_603.txt b/tools/test/h5diff/testfiles/h5diff_603.txt
index 36cd0ef..84111b3 100644
--- a/tools/test/h5diff/testfiles/h5diff_603.txt
+++ b/tools/test/h5diff/testfiles/h5diff_603.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_606.txt b/tools/test/h5diff/testfiles/h5diff_606.txt
index c2e9ac1..d915d36 100644
--- a/tools/test/h5diff/testfiles/h5diff_606.txt
+++ b/tools/test/h5diff/testfiles/h5diff_606.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_612.txt b/tools/test/h5diff/testfiles/h5diff_612.txt
index 2e09432..1ef8cdf 100644
--- a/tools/test/h5diff/testfiles/h5diff_612.txt
+++ b/tools/test/h5diff/testfiles/h5diff_612.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_615.txt b/tools/test/h5diff/testfiles/h5diff_615.txt
index a07de54..881362e 100644
--- a/tools/test/h5diff/testfiles/h5diff_615.txt
+++ b/tools/test/h5diff/testfiles/h5diff_615.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_621.txt b/tools/test/h5diff/testfiles/h5diff_621.txt
index 5f44dd7..ba39a99 100644
--- a/tools/test/h5diff/testfiles/h5diff_621.txt
+++ b/tools/test/h5diff/testfiles/h5diff_621.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_622.txt b/tools/test/h5diff/testfiles/h5diff_622.txt
index 2e28a42..70421fc 100644
--- a/tools/test/h5diff/testfiles/h5diff_622.txt
+++ b/tools/test/h5diff/testfiles/h5diff_622.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_623.txt b/tools/test/h5diff/testfiles/h5diff_623.txt
index 21cb90a..0d74268 100644
--- a/tools/test/h5diff/testfiles/h5diff_623.txt
+++ b/tools/test/h5diff/testfiles/h5diff_623.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_624.txt b/tools/test/h5diff/testfiles/h5diff_624.txt
index 92c98d9..cb8b8b4 100644
--- a/tools/test/h5diff/testfiles/h5diff_624.txt
+++ b/tools/test/h5diff/testfiles/h5diff_624.txt
@@ -18,10 +18,9 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
Verbose mode with level. Print differences and list of objects.
Level of detail depends on value of N:
0 : Identical to '-v' or '--verbose'.
- 1 : All level 0 information plus one-line attribute
- status summary.
- 2 : All level 1 information plus extended attribute
- status report.
+ 1 : All level 0 information plus one-line attribute status summary.
+ 2 : All level 1 information plus extended attribute status report.
+ 3 : All level 2 information plus file names.
-q, --quiet
Quiet mode. Do not produce output.
--enable-error-stack
@@ -110,6 +109,14 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]]
excluded.
This option can be used repeatedly to exclude multiple paths.
+ --exclude-attribute "path/to/object/with/attribute"
+ Exclude attributes on the specified path to an object when comparing files or groups.
+
+ If there are multiple paths to an object, only the specified path(s)
+ will be excluded; the comparison will include any path not explicitly
+ excluded.
+ This option can be used repeatedly to exclude multiple paths.
+
Modes of output:
Default mode: print the number of differences found and where they occured
-r Report mode: print the above plus the differences
diff --git a/tools/test/h5diff/testfiles/h5diff_70.txt b/tools/test/h5diff/testfiles/h5diff_70.txt
index efa34ea..b0b8bf6 100644
--- a/tools/test/h5diff/testfiles/h5diff_70.txt
+++ b/tools/test/h5diff/testfiles/h5diff_70.txt
@@ -1183,10 +1183,42 @@ position opaque3D of </dset> opaque3D of </dset> difference
[ 3 2 1 ] 24 0 24
24 differences found
attribute: <reference of </dset>> and <reference of </dset>>
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
0 differences found
attribute: <reference2D of </dset>> and <reference2D of </dset>>
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
0 differences found
attribute: <reference3D of </dset>> and <reference3D of </dset>>
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
0 differences found
attribute: <string of </dset>> and <string of </dset>>
size: [2] [2]
diff --git a/tools/test/h5diff/testfiles/h5diff_700.txt b/tools/test/h5diff/testfiles/h5diff_700.txt
index 851a407..6cf9893 100644
--- a/tools/test/h5diff/testfiles/h5diff_700.txt
+++ b/tools/test/h5diff/testfiles/h5diff_700.txt
@@ -1187,10 +1187,42 @@ position opaque3D of </dset> opaque3D of </dset> difference
[ 3 2 1 ] 24 0 24
24 differences found
attribute: <reference of </dset>> and <reference of </dset>>
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
0 differences found
attribute: <reference2D of </dset>> and <reference2D of </dset>>
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
0 differences found
attribute: <reference3D of </dset>> and <reference3D of </dset>>
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
0 differences found
attribute: <string of </dset>> and <string of </dset>>
size: [2] [2]
diff --git a/tools/test/h5diff/testfiles/h5diff_701.txt b/tools/test/h5diff/testfiles/h5diff_701.txt
index 33f1a0f..4187754 100644
--- a/tools/test/h5diff/testfiles/h5diff_701.txt
+++ b/tools/test/h5diff/testfiles/h5diff_701.txt
@@ -1254,10 +1254,42 @@ position opaque3D of </dset> opaque3D of </dset> difference
[ 3 2 1 ] 24 0 24
24 differences found
attribute: <reference of </dset>> and <reference of </dset>>
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
0 differences found
attribute: <reference2D of </dset>> and <reference2D of </dset>>
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
0 differences found
attribute: <reference3D of </dset>> and <reference3D of </dset>>
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
0 differences found
attribute: <string of </dset>> and <string of </dset>>
size: [2] [2]
diff --git a/tools/test/h5diff/testfiles/h5diff_702.txt b/tools/test/h5diff/testfiles/h5diff_702.txt
index 851a407..6cf9893 100644
--- a/tools/test/h5diff/testfiles/h5diff_702.txt
+++ b/tools/test/h5diff/testfiles/h5diff_702.txt
@@ -1187,10 +1187,42 @@ position opaque3D of </dset> opaque3D of </dset> difference
[ 3 2 1 ] 24 0 24
24 differences found
attribute: <reference of </dset>> and <reference of </dset>>
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
0 differences found
attribute: <reference2D of </dset>> and <reference2D of </dset>>
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
0 differences found
attribute: <reference3D of </dset>> and <reference3D of </dset>>
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
0 differences found
attribute: <string of </dset>> and <string of </dset>>
size: [2] [2]
diff --git a/tools/test/h5diff/testfiles/h5diff_703.txt b/tools/test/h5diff/testfiles/h5diff_703.txt
index 33f1a0f..4187754 100644
--- a/tools/test/h5diff/testfiles/h5diff_703.txt
+++ b/tools/test/h5diff/testfiles/h5diff_703.txt
@@ -1254,10 +1254,42 @@ position opaque3D of </dset> opaque3D of </dset> difference
[ 3 2 1 ] 24 0 24
24 differences found
attribute: <reference of </dset>> and <reference of </dset>>
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
+Not comparable: <reference of </dset>> or <reference of </dset>> is an empty dataset
0 differences found
attribute: <reference2D of </dset>> and <reference2D of </dset>>
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
+Not comparable: <reference2D of </dset>> or <reference2D of </dset>> is an empty dataset
0 differences found
attribute: <reference3D of </dset>> and <reference3D of </dset>>
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
+Not comparable: <reference3D of </dset>> or <reference3D of </dset>> is an empty dataset
0 differences found
attribute: <string of </dset>> and <string of </dset>>
size: [2] [2]
diff --git a/tools/test/h5diff/testfiles/h5diff_80.txt b/tools/test/h5diff/testfiles/h5diff_80.txt
index b223eed..11dccd8 100644
--- a/tools/test/h5diff/testfiles/h5diff_80.txt
+++ b/tools/test/h5diff/testfiles/h5diff_80.txt
@@ -528,166 +528,166 @@ position opaque3D opaque3D difference
24 differences found
dataset: </g1/reference> and </g1/reference>
size: [2] [2]
-position difference
+position reference reference difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference reference difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
4 differences found
dataset: </g1/reference2D> and </g1/reference2D>
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference2D reference2D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
12 differences found
dataset: </g1/reference3D> and </g1/reference3D>
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
size: [2] [2]
-position difference
+position reference3D reference3D difference
------------------------------------------------------------
[ 0 ] 1 0 1
[ 1 ] 2 0 2
diff --git a/tools/test/h5diff/testfiles/h5diff_eps.txt b/tools/test/h5diff/testfiles/h5diff_eps.txt
new file mode 100644
index 0000000..3a71366
--- /dev/null
+++ b/tools/test/h5diff/testfiles/h5diff_eps.txt
@@ -0,0 +1,17 @@
+file1: h5diff_eps1.h5
+file2: h5diff_eps2.h5
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /DS1
+
+
+group : </> and </>
+0 differences found
+Attributes status: 0 common, 0 only in obj1, 0 only in obj2
+
+dataset: </DS1> and </DS1>
+0 differences found
+Attributes status: 0 common, 0 only in obj1, 0 only in obj2
+EXIT CODE: 0
diff --git a/tools/test/h5diff/testfiles/h5diff_eps1.h5 b/tools/test/h5diff/testfiles/h5diff_eps1.h5
new file mode 100644
index 0000000..2803a1d
--- /dev/null
+++ b/tools/test/h5diff/testfiles/h5diff_eps1.h5
Binary files differ
diff --git a/tools/test/h5diff/testfiles/h5diff_eps2.h5 b/tools/test/h5diff/testfiles/h5diff_eps2.h5
new file mode 100644
index 0000000..4acf27a
--- /dev/null
+++ b/tools/test/h5diff/testfiles/h5diff_eps2.h5
Binary files differ
diff --git a/tools/test/h5diff/testfiles/h5diff_reg.txt b/tools/test/h5diff/testfiles/h5diff_reg.txt
index d4f5415..ecb6275 100644
--- a/tools/test/h5diff/testfiles/h5diff_reg.txt
+++ b/tools/test/h5diff/testfiles/h5diff_reg.txt
@@ -1,12 +1,11 @@
dataset: </Dataset3> and </Dataset3>
-attribute: <Attr1 of <(null)>> and <Attr1 of <(null)>>
+attribute: <Attr1 of <Dataset3>> and <Attr1 of <Dataset3>>
0 differences found
-Warning: Cannot open referenced attribute: attribute 1
-Warning: Cannot open referenced attribute: attribute 2
-attribute: <Attr2 of <(null)>> and <Attr2 of <(null)>>
+Warning: Cannot open referenced attribute1
+attribute: <Attr2 of <Dataset3>> and <Attr2 of <Dataset3>>
0 differences found
-attribute: <Attr3 of <(null)>> and <Attr3 of <(null)>>
+attribute: <Attr3 of <Dataset3>> and <Attr3 of <Dataset3>>
0 differences found
0 differences found
obj1 obj2
diff --git a/tools/test/h5diff/testfiles/diff_strings1.h5 b/tools/test/h5diff/testfiles/h5diff_strings1.h5
index 0f8b380..0f8b380 100644
--- a/tools/test/h5diff/testfiles/diff_strings1.h5
+++ b/tools/test/h5diff/testfiles/h5diff_strings1.h5
Binary files differ
diff --git a/tools/test/h5diff/testfiles/diff_strings2.h5 b/tools/test/h5diff/testfiles/h5diff_strings2.h5
index e8520ae..e8520ae 100644
--- a/tools/test/h5diff/testfiles/diff_strings2.h5
+++ b/tools/test/h5diff/testfiles/h5diff_strings2.h5
Binary files differ
diff --git a/tools/test/h5diff/testh5diff.sh.in b/tools/test/h5diff/testh5diff.sh.in
index 2d490a8..4e622ee 100644
--- a/tools/test/h5diff/testh5diff.sh.in
+++ b/tools/test/h5diff/testh5diff.sh.in
@@ -85,6 +85,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_attr2.h5
$SRC_H5DIFF_TESTFILES/h5diff_attr3.h5
$SRC_H5DIFF_TESTFILES/h5diff_dset1.h5
$SRC_H5DIFF_TESTFILES/h5diff_dset2.h5
+$SRC_H5DIFF_TESTFILES/h5diff_dset3.h5
$SRC_H5DIFF_TESTFILES/h5diff_hyper1.h5
$SRC_H5DIFF_TESTFILES/h5diff_hyper2.h5
$SRC_H5DIFF_TESTFILES/h5diff_empty.h5
@@ -119,8 +120,10 @@ $SRC_H5DIFF_TESTFILES/h5diff_attr_v_level2.h5
$SRC_H5DIFF_TESTFILES/h5diff_enum_invalid_values.h5
$SRC_H5DIFF_TESTFILES/non_comparables1.h5
$SRC_H5DIFF_TESTFILES/non_comparables2.h5
-$SRC_H5DIFF_TESTFILES/diff_strings1.h5
-$SRC_H5DIFF_TESTFILES/diff_strings2.h5
+$SRC_H5DIFF_TESTFILES/h5diff_strings1.h5
+$SRC_H5DIFF_TESTFILES/h5diff_strings2.h5
+$SRC_H5DIFF_TESTFILES/h5diff_eps1.h5
+$SRC_H5DIFF_TESTFILES/h5diff_eps2.h5
$SRC_TOOLS_TESTFILES/tvlstr.h5
"
@@ -349,6 +352,8 @@ $SRC_H5DIFF_TESTFILES/h5diff_708.txt
$SRC_H5DIFF_TESTFILES/h5diff_709.txt
$SRC_H5DIFF_TESTFILES/h5diff_710.txt
$SRC_H5DIFF_TESTFILES/h5diff_80.txt
+$SRC_H5DIFF_TESTFILES/h5diff_800.txt
+$SRC_H5DIFF_TESTFILES/h5diff_801.txt
$SRC_H5DIFF_TESTFILES/h5diff_90.txt
$SRC_H5DIFF_TESTFILES/h5diff_8625.txt
$SRC_H5DIFF_TESTFILES/h5diff_8639.txt
@@ -357,6 +362,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_v1.txt
$SRC_H5DIFF_TESTFILES/h5diff_v2.txt
$SRC_H5DIFF_TESTFILES/h5diff_v3.txt
$SRC_H5DIFF_TESTFILES/h5diff_vlstr.txt
+$SRC_H5DIFF_TESTFILES/h5diff_eps.txt
"
#
@@ -717,10 +723,10 @@ TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b
# Strings
# ( HDFFV-10128 )
-TOOLTEST h5diff_60.txt -v diff_strings1.h5 diff_strings2.h5 string1 string1
-TOOLTEST h5diff_61.txt -v diff_strings1.h5 diff_strings2.h5 string2 string2
-TOOLTEST h5diff_62.txt -v diff_strings1.h5 diff_strings2.h5 string3 string3
-TOOLTEST h5diff_63.txt -v diff_strings1.h5 diff_strings2.h5 string4 string4
+TOOLTEST h5diff_60.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string1 string1
+TOOLTEST h5diff_61.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string2 string2
+TOOLTEST h5diff_62.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string3 string3
+TOOLTEST h5diff_63.txt -v h5diff_strings1.h5 h5diff_strings2.h5 string4 string4
# ##############################################################################
# # Error messages
@@ -763,6 +769,9 @@ TOOLTEST h5diff_609.txt -d 200 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dse
# 6.10: number smaller than smallest difference
TOOLTEST h5diff_610.txt -d 1 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4
+# eps: number smaller than epsilon
+TOOLTEST h5diff_eps.txt -v3 -d 1e-16 h5diff_eps1.h5 h5diff_eps2.h5
+
# ##############################################################################
# # -p
@@ -1184,6 +1193,12 @@ TOOLTEST h5diff_645.txt -v -p 0.05 --use-system-epsilon h5diff_basic1.h5 h5diff_
TOOLTEST h5diff_646.txt -v --use-system-epsilon -p 0.05 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4
# ##############################################################################
+# # Test array variances
+# ##############################################################################
+TOOLTEST h5diff_800.txt -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/array /g1/array
+TOOLTEST h5diff_801.txt -v h5diff_dset1.h5 h5diff_dset3.h5 /g1/array /g1/array
+
+# ##############################################################################
# VDS tests
# ##############################################################################
TOOLTEST h5diff_v1.txt -v 1_vds.h5 2_vds.h5
diff --git a/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err b/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
index d85a999..e72892d 100644
--- a/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
+++ b/tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
@@ -1,8 +1 @@
h5format_convert error: unable to downgrade dataset "/DSET_ERR"
-H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs):
- #000: (file name) line (number) in h5trav_visit(): traverse failed
- major: Failure in tools library
- minor: error in function
- #001: (file name) line (number) in traverse(): H5Lvisit_by_name failed
- major: Failure in tools library
- minor: error in function
diff --git a/tools/test/h5format_convert/testh5fc.sh.in b/tools/test/h5format_convert/testh5fc.sh.in
index d780a3d..2cdd445 100644
--- a/tools/test/h5format_convert/testh5fc.sh.in
+++ b/tools/test/h5format_convert/testh5fc.sh.in
@@ -483,7 +483,7 @@ TOOLTEST_OUT h5fc_v_n_all.ddl h5fc_non_v3.h5 -v -n
#
#
# h5format_convert -v h5fc_err_level.h5 (error encountered in converting the dataset)
-TOOLTEST_MASK_OUT h5fc_v_err.ddl h5fc_err_level.h5 -v --enable-error-stack
+TOOLTEST_MASK_OUT h5fc_v_err.ddl h5fc_err_level.h5 -v
#
#
#
diff --git a/tools/test/h5jam/tellub.c b/tools/test/h5jam/tellub.c
index 559c677..e7bb561 100644
--- a/tools/test/h5jam/tellub.c
+++ b/tools/test/h5jam/tellub.c
@@ -70,11 +70,11 @@ parse_command_line (int argc, const char *argv[])
switch ((char) opt) {
case 'h':
usage (h5tools_getprogname());
- HDexit(EXIT_SUCCESS);
+ h5tools_setstatus(EXIT_SUCCESS);
case '?':
default:
usage (h5tools_getprogname());
- HDexit(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
}
}
@@ -82,10 +82,17 @@ parse_command_line (int argc, const char *argv[])
if (argc <= opt_ind) {
error_msg("missing file name\n");
usage (h5tools_getprogname());
- HDexit(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
}
} /* end parse_command_line() */
+static void
+leave(int ret)
+{
+ h5tools_close();
+ HDexit(ret);
+}
+
/*-------------------------------------------------------------------------
* Function: main
*
@@ -98,8 +105,6 @@ int
main (int argc, const char *argv[])
{
char *ifname;
- void *edata;
- H5E_auto2_t func;
hid_t ifile;
hsize_t usize;
htri_t testval;
@@ -112,16 +117,16 @@ main (int argc, const char *argv[])
/* Initialize h5tools lib */
h5tools_init();
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
parse_command_line(argc, argv);
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
if(argc <= (opt_ind)) {
error_msg("missing file name\n");
usage (h5tools_getprogname());
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
ifname = HDstrdup(argv[opt_ind]);
@@ -130,33 +135,38 @@ main (int argc, const char *argv[])
if(testval <= 0) {
error_msg("Input HDF5 file is not HDF \"%s\"\n", ifname);
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
ifile = H5Fopen(ifname, H5F_ACC_RDONLY, H5P_DEFAULT);
if(ifile < 0) {
error_msg("Can't open input HDF5 file \"%s\"\n", ifname);
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
plist = H5Fget_create_plist(ifile);
if(plist < 0) {
error_msg("Can't get file creation plist for file \"%s\"\n", ifname);
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
status = H5Pget_userblock(plist, &usize);
if(status < 0) {
error_msg("Can't get user block for file \"%s\"\n", ifname);
- return EXIT_FAILURE;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
HDprintf("%ld\n", (long) usize);
+done:
H5Pclose (plist);
H5Fclose (ifile);
- return EXIT_SUCCESS;
+ leave(h5tools_getstatus());
} /* end main() */
diff --git a/tools/testfiles/trefer_attrR.ddl b/tools/testfiles/trefer_attrR.ddl
index e64c8e6..118e7bf 100644
--- a/tools/testfiles/trefer_attrR.ddl
+++ b/tools/testfiles/trefer_attrR.ddl
@@ -12,16 +12,16 @@ GROUP "/" {
}
}
ATTRIBUTE "trefer_attr.h5/Group1/Dataset2/Attr1" {
- NULL
+ NULL
}
- ATTRIBUTE "trefer_attr.h5/Group1/Attr2" {
+ ATTRIBUTE "trefer_attr.h5/Group1/Attr2" {
DATATYPE H5T_STD_U32LE
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
(0): 1, 4, 7, 10
}
}
- ATTRIBUTE "trefer_attr.h5/Group1/Datatype1/Attr3" {
+ ATTRIBUTE "trefer_attr.h5/Group1/Datatype1/Attr3" {
DATATYPE H5T_STD_U32LE
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
diff --git a/tools/testfiles/trefer_extR.ddl b/tools/testfiles/trefer_extR.ddl
index 3d4647d..a96e5fd 100644
--- a/tools/testfiles/trefer_extR.ddl
+++ b/tools/testfiles/trefer_extR.ddl
@@ -12,16 +12,16 @@ GROUP "/" {
}
}
ATTRIBUTE "trefer_ext1.h5/Group1/Dataset2/Attr1" {
- NULL
+ NULL
}
- ATTRIBUTE "trefer_ext1.h5/Group1/Attr2" {
+ ATTRIBUTE "trefer_ext1.h5/Group1/Attr2" {
DATATYPE H5T_STD_U32LE
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
(0): 1, 4, 7, 10
}
}
- ATTRIBUTE "trefer_ext1.h5/Group1/Datatype1/Attr3" {
+ ATTRIBUTE "trefer_ext1.h5/Group1/Datatype1/Attr3" {
DATATYPE H5T_STD_U32LE
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {