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authorlrknox <lrknox>2018-03-29 12:18:31 (GMT)
committerlrknox <lrknox>2018-03-29 12:21:19 (GMT)
commit1c1518c1d6c56945d33db9adc004f6c4d3ca6a67 (patch)
tree20712705522b2292825687289b81e2fbae33f866
parente809ca0c3768052a0127dc8d2bea9e95365711c4 (diff)
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Commit Elena's RELEASE.txt edits and Les'/Lori's README.txt revision.
-rwxr-xr-x[-rw-r--r--]README.txt90
-rwxr-xr-x[-rw-r--r--]release_docs/RELEASE.txt183
2 files changed, 168 insertions, 105 deletions
diff --git a/README.txt b/README.txt
index 172612e..1d1ff2f 100644..100755
--- a/README.txt
+++ b/README.txt
@@ -1,38 +1,80 @@
HDF5 version 1.10.2 currently under development
+
+------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
------------------------------------------------------------------------------
+THE HDF GROUP
+---------------
+
+The HDF Group is the developer of HDF5®, a high-performance software library and
+data format that has been adopted across multiple industries and has become a
+de facto standard in scientific and research communities.
+
+More information about The HDF Group, the HDF5 Community and the HDF5 software
+project, tools and services can be found at the Group's website.
+
+ https://www.hdfgroup.org/
+
+
+DOCUMENTATION
+-------------
This release is fully functional for the API described in the documentation.
-See the RELEASE.txt file in the release_docs/ directory for information
-specific to this release of the library. Several INSTALL* files can also be
-found in the release_docs/ directory: INSTALL contains instructions for
-compiling and installing the library; INSTALL_parallel contains instructions
-for installing the parallel version of the library; similarly-named files
-contain instructions for several environments on MS Windows systems.
+ https://portal.hdfgroup.org/display/HDF5/The+HDF5+API
+
+Full Documentation and Programming Resources for this release can be found at
+ https://portal.hdfgroup.org/display/HDF5
+
+See the RELEASE.txt file in the release_docs/ directory for information specific
+to the features and updates included in this release of the library.
+
+Several more files are located within the release_docs/ directory with specific
+details for several common platforms and configurations.
+
+ INSTALL - Start Here. General instructions for compiling and installing the library
+ INSTALL_CMAKE - instructions for building with CMake (Kitware.com)
+ INSTALL_parallel - instructions for building and configuring Parallel HDF5
+ INSTALL_Windows and INSTALL_Cygwin - MS Windows installations.
+
+
+
+HELP AND SUPPORT
+----------------
+Information regarding Help Desk and Support services is available at
+
+ https://portal.hdfgroup.org/display/support/The+HDF+Help+Desk
+
+
-Documentation for this release can be found at the following URL:
- http://www.hdfgroup.org/HDF5/doc/.
+FORUM and NEWS
+--------------
+The following public forums are provided for public announcements and discussions
+of interest to the general HDF5 Community.
-The following mailing lists are currently set up for HDF5 Library users:
+ Homepage of the Forum
+ https://forum.hdfgroup.org
- news - For announcements of HDF5 related developments,
- not a discussion list.
+ News and Announcement
+ https://forum.hdfgroup.org/c/news-and-announcements-from-the-hdf-group
- hdf-forum - For general discussion of the HDF5 library with
- other users.
+ HDF5 and HDF4 Topics
+ https://forum.hdfgroup.org/c/hdf5
+
+These forums are provided as an open and public service for searching and reading.
+Posting requires completing a simple registration and allows one to join in the
+conversation. Please read the following instructions pertaining to the Forum's
+use and configuration
+ https://forum.hdfgroup.org/t/quickstart-guide-welcome-to-the-new-hdf-forum
-To subscribe to a list, send mail to "<list>-subscribe@lists.hdfgroup.org".
-where <list> is the name of the list. For example, send a request
-to subscribe to the 'news' mail list to the following address:
- news-subscribe@lists.hdfgroup.org
-Messages sent to the list should be addressed to "<list>@lists.hdfgroup.org".
+SNAPSHOTS, PREVIOUS RELEASES AND SOURCE CODE
+--------------------------------------------
+Periodically development code snapshots are provided at the following URL:
+ https://gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/snapshots/
-Periodic code snapshots are provided at the following URL:
- ftp://ftp.hdfgroup.uiuc.edu/pub/outgoing/hdf5/snapshots
-Please read the README.txt file in that directory before working with a
-library snapshot.
+Source packages for current and previous releases are located at:
+ https://portal.hdfgroup.org/display/support/Downloads
-The HDF5 website is located at http://hdfgroup.org/HDF5/
+Development code is available at our BitBucket Server:
+ https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/browse
-Bugs should be reported to help@hdfgroup.org.
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index 95fe8a2..bcbcdcb 100644..100755
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -44,11 +44,12 @@ CONTENTS
New Features
============
- Configuration:
- -------------
- - CMake
+ Configuration and Build Systems:
+ --------------------------------
+ - CMake builds
+ --------------
- Change minimum version to 3.10.
+ - Changed minimum CMake required version to 3.10.
This change removed the need to support a copy of the FindMPI.cmake module,
which has been removed, along with its subfolder in the config/cmake_ext_mod
@@ -56,19 +57,16 @@ New Features
(ADB - 2018/03/09)
- - CMake
-
- Added pkg-config file generation
+ - Added pkg-config file generation
Added pkg-config file generation for the C, C++, HL, and HL C++ libraries.
- In addition, builds on linux will create h5cXXX scripts that use the pkg-config
- files. This is a limited implementation of a script like autotools h5cc.
+ In addition, builds on Linux will create h5cc, h5c++, h5hlcc, and h5hlc++ scripts in the bin
+ directory that use the pkg-config files. The scripts can be used to build HDF5 C and C++
+ applications (i.e, similar to the compiler scripts produced by the Autotools builds).
(ADB - 2018/03/08, HDFFV-4359)
- - CMake
-
- Refactor use of CMAKE_BUILD_TYPE for new variable, which understands
+ - Refactored use of CMAKE_BUILD_TYPE for new variable, which understands
the type of generator in use.
Added new configuration macros to use new HDF_BUILD_TYPE variable. This
@@ -76,7 +74,10 @@ New Features
(ADB - 2018/01/08, HDFFV-10385, HDFFV-10296)
- - Removed version-specific gcc/gfortran flags for version 4.0 (inclusive)
+ - Autotools builds
+ ------------------
+
+ - Removed version-specific gcc/gfortran flags for version 4.0 (inclusive)
and earlier.
The config/gnu-flags file, which is sourced as a part of the configure
@@ -94,7 +95,7 @@ New Features
(DER - 2017/05/31, HDFFV-9937)
- - -fno-omit-frame-pointer was added when building with debugging symbols
+ - -fno-omit-frame-pointer was added when building with debugging symbols
enabled.
Debugging symbols can be enabled independently of the overall build
@@ -126,7 +127,7 @@ New Features
Currently, VDS source files must be in the active directory to be
found by the virtual file. Adding the option of a prefix to be set
on the virtual file, using a data access property list (DAPL),
- allows the source files to located at an absolute or relative path
+ allows the source files to locate at an absolute or relative path
to the virtual file.
Private utility functions in H5D and H5L packages merged into single
function in H5F package.
@@ -167,14 +168,36 @@ New Features
hid_t values that are of ID type H5I_REFERENCE.
This enum value will be removed in a future major version of the library.
- The code will remain unchanged in the HDF5 1.10.x branches.
+ The code will remain unchanged in the HDF5 1.10.x releases and branches.
(DER - 2017/04/05, HDFFV-10252)
Parallel Library:
-----------------
- - Optimize parallel open/location of the HDF5 super-block
+ - Enabled compression for parallel applications.
+
+ With this release parallel applications can create and write compressed
+ datasets (or the datasets with the filters such as Fletcher32 applied).
+
+ (EIP - 2018/03/29)
+
+ - Addressed slow file close on some Lustre file systems.
+
+ Slow file close has been reported on some Lustre file systems.
+ While the ultimate cause is not understood fully, the proximate
+ cause appears to be long delays in MPI_File_set_size() calls at
+ file close and flush.
+
+ To minimize this problem pending a definitive diagnosis and fix,
+ PHDF5 has been modified to avoid MPI_File_set_size() calls when
+ possible. This is done by comparing the library's EOA (End of
+ Allocation) with the file systems EOF, and skipping the
+ MPI_File_set_size() call if the two match.
+
+ (JRM - 2018/03/29)
+
+ - Optimized parallel open/location of the HDF5 super-block.
Previous releases of PHDF5 required all parallel ranks to
search for the HDF5 superblock signature when opening the
@@ -198,7 +221,7 @@ New Features
(RAW - 2017/10/10, HDFFV-10294)
- - Large MPI-IO transfers
+ - Added large (>2GB) MPI-IO transfers.
Previous releases of PHDF5 would fail when attempting to
read or write greater than 2GB of data in a single IO operation.
@@ -297,7 +320,7 @@ New Features
(BMR - 2018/03/11, HDFFV-10149)
- Added overloaded functions H5Location::createGroup to take a link
- creation property list
+ creation property list.
Group createGroup(const char* name, const LinkCreatPropList& lcpl)
Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl)
@@ -320,7 +343,7 @@ New Features
(ADB - 2018/03/13, HDFFV-10412)
- - Wrappers added for the following APIs:
+ - Wrappers were added for the following C APIs:
H5Pset_evict_on_close
H5Pget_evict_on_close
H5Pset_chunk_opts
@@ -337,7 +360,7 @@ New Features
JNI code which refers to this value will be removed in a future
major version of the library. The code will remain unchanged in the
- 1.10.x branches.
+ 1.10.x releases and branches.
See the C library section, above, for further information.
@@ -346,13 +369,11 @@ New Features
Tools:
------
- - h5diff
-
- h5diff has new option enable-error-stack.
+ - h5diff has a new option to display error stack.
Updated h5diff with the --enable-error-stack argument, which
enables the display of the hdf5 error stack. This completes the
- improvement to the main tools; h5copy, h5diff, h5dump, h5ls and
+ improvement to the main tools: h5copy, h5diff, h5dump, h5ls and
h5repack.
(ADB - 2017/08/30, HDFFV-9774)
@@ -360,15 +381,15 @@ New Features
Support for new platforms, languages and compilers.
=======================================
- -
+ - None
Bug Fixes since HDF5-1.10.1 release
==================================
Library
-------
- - The data read after a direct chunk write to a chunked dataset
- was incorrect.
+ - The data read after a direct chunk write to a chunked dataset with
+ one chunk was incorrect.
The problem was due to the passing of a null dataset pointer to
the insert callback for the chunk index in the routine
@@ -383,41 +404,40 @@ Bug Fixes since HDF5-1.10.1 release
(VC - 2018/03/20, HDFFV-10425)
- - Added public routine H5DOread_chunk to the high-level C library
-
- As we have H5DOwrite_chunk() to write an entire chunk to the file
- directly, the customer requested to add this public routine to
- read an entire chunk from the file directly.
-
- This public routine was added based on a patch from GE Healthcare.
+ - Added public routine H5DOread_chunk to the high-level C library.
+ The patch for H5DOwrite_chunk() to write an entire chunk to the file
+ directly was contributed by GE Healthcare and integrated by The HDF Group
+ developers.
+
(VC - 2017/05/19, HDFFV-9934)
- - Freeing of object header in H5Ocache.c
+ - Freeing of object header after failed checksum verification.
- It was discovered that the object header was not released properly
+ It was discovered that the object header (in H5Ocache.c) was not released properly
when the checksum verification failed and a re-load of the object
header was needed.
- Free the object header that failed the chksum verification only
+ Freed the object header that failed the chksum verification only
after the new object header is reloaded, deserialized and set up.
(VC - 2018/03/14, HDFFV-10209)
- - H5Pset_evict_on_close in H5Pfapl.c
+ - Updated H5Pset_evict_on_close in H5Pfapl.c
Changed the minor error number from H5E_CANTSET to H5E_UNSUPPORTED for
parallel library.
(ADB - 2018/03/06, HDFFV-10414)
- - Utility function can not handle lowercase Windows drive letters
+ - Fixed the problems with the utility function that could not handle lowercase
+ Windows drive letters.
- Added call to toupper function for drive letter.
+ Added call to upper function for drive letter.
(ADB - 2017/12/18, HDFFV-10307)
- - Fix H5Sencode() bug when the number of elements selected is > 2^32
+ - Fixed H5Sencode() bug when the number of elements selected was > 2^32.
H5Sencode() incorrectly encodes dataspace selection with number of
elements exceeding 2^32. When decoding such selection via H5Sdecode(),
@@ -425,15 +445,17 @@ Bug Fixes since HDF5-1.10.1 release
what is encoded. This problem exists for H5S_SEL_HYPER and
H5S_SEL_POINTS encoding.
- The cause of the problem is because the library uses 32 bits to
+ The cause of the problem is due to the fact that the library uses 32 bits to
encode counts and block offsets for the selection.
The solution is to use the original 32 bit encodings if possible,
- but use a different way to encode selection > 32 bits when needed.
- See details in the RFC: H5Sencode/H5Secode Format Change.
+ but use a different way to encode selection if more that 32 bits is needed.
+ See details in the RFC: H5Sencode/H5Sdecode Format Change i
+ https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5doc/browse/RFCs/HDF5_Library/H5SencodeFormatChange.
(VC - 2017/11/28, HDFFV-9947)
- - Filter plugin handling in H5PL.c and H5Z.c
+ - Fixed filter plugin handling in H5PL.c and H5Z.c to not require i availability of
+ dependent libraries (e.g., szip or zlib).
It was discovered that the dynamic loading process used by
filter plugins had issues with library dependencies.
@@ -445,7 +467,7 @@ Bug Fixes since HDF5-1.10.1 release
(ADB - 2017/11/16, HDFFV-10328)
- - Fix rare object header corruption bug
+ - Fixed rare object header corruption bug.
In certain cases, such as when converting large attributes to dense
storage, an error could occur which would either fail an assertion or
@@ -453,7 +475,7 @@ Bug Fixes since HDF5-1.10.1 release
(NAF - 2017/11/14, HDFFV-10274)
- - H5Zfilter_avail in H5Z.c
+ - Updated H5Zfilter_avail in H5Z.c.
The public function checked for plugins, while the private
function did not.
@@ -464,16 +486,18 @@ Bug Fixes since HDF5-1.10.1 release
(ADB - 2017/10/10, HDFFV-10297, HDFFV-10319)
- - Fix H5HL_offset_into()
+ - h5dump produced SEGFAULT when dumping corrypted file.
+
+ The behavior was due to the error in the internal function H5HL_offset_into().
- (1) Fix H5HL_offset_into() to return error when offset exceeds heap data
+ (1) Fixed H5HL_offset_into() to return error when offset exceeds heap data
block size.
- (2) Fix other places in the library that call this routine to detect
+ (2) Fixed other places in the library that call this routine to detect
error routine.
(VC - 2017/08/30, HDFFV-10216)
- - Fixes for paged aggregation
+ - Fixes for paged aggregation feature.
Skip test in test/fheap.c when:
(1) multi/split drivers and
@@ -481,8 +505,6 @@ Bug Fixes since HDF5-1.10.1 release
(VC, 2017/07/10)
- - Fixes for paged aggregation
-
Changes made based on RFC review comments:
(1) Added maximum value for file space page size
(2) Dropped check for page end metadata threshold
@@ -490,7 +512,7 @@ Bug Fixes since HDF5-1.10.1 release
(VC - 2017/06/09)
- - Fix for infinite loop in H5VM_power2up().
+ - Fixed for infinite loop in H5VM_power2up().
The function H5VM_power2up() returns the next power of 2
for n. When n exceeds 2^63, it overflows and becomes 0 causing
@@ -501,7 +523,7 @@ Bug Fixes since HDF5-1.10.1 release
(VC - 2017/07/10, HDFFV-10217)
- - Fix for H5Ocopy doesn't work with open identifiers
+ - Fixed for H5Ocopy doesn't work with open identifiers.
Changes made so that raw data for dataset objects are copied from
cached info when possible instead of flushing objects to file and
@@ -524,7 +546,7 @@ Bug Fixes since HDF5-1.10.1 release
(DER - 2017/11/21, HDFFV-10330)
- - Fix for collective metadata writes on file close
+ - Fixed collective metadata writes on file close.
It was discovered that metadata was being written twice as part of
the parallel file close behavior, once independently and once
@@ -663,9 +685,9 @@ Bug Fixes since HDF5-1.10.1 release
Configuration
-------------
- - CMake
+ - CMake changes
- Update CMake commands configuration.
+ - Updated CMake commands configuration.
A number of improvements were made to the CMake commands. Most
changes simplify usage or eliminate unused constructs. Also,
@@ -673,9 +695,7 @@ Bug Fixes since HDF5-1.10.1 release
(ADB - 2018/02/01, HDFFV-10398)
- - CMake
-
- Correct usage of CMAKE_BUILD_TYPE variable.
+ - Corrected usage of CMAKE_BUILD_TYPE variable.
The use of the CMAKE_BUILD_TYPE is incorrect for multi-config
generators (Visual Studio and XCode) and is optional for single
@@ -686,18 +706,15 @@ Bug Fixes since HDF5-1.10.1 release
(ADB - 2018/01/10, HDFFV-10385)
- - CMake
-
- Added replacement of fortran flags if using static CRT.
+ - Added replacement of fortran flags if using static CRT.
Added TARGET_STATIC_CRT_FLAGS call to HDFUseFortran.cmake file in
config/cmake_ext_mod folder.
(ADB - 2018/01/08, HDFFV-10334)
- - CMake
- The hdf5 library used shared szip and zlib, which needlessly required
+ - The hdf5 library used shared szip and zlib, which needlessly required
applications to link with the same szip and zlib libraries.
Changed the target_link_libraries commands to use the static libs.
@@ -754,7 +771,7 @@ Bug Fixes since HDF5-1.10.1 release
(ADB - 2017/07/12, HDFFV-10254)
- - cmake test execution environment
+ - CMake test execution environment
The parallel HDF5 test: 't_pread' assumed the use of autotools
and the directory structure associated with that testing approach.
@@ -765,13 +782,13 @@ Bug Fixes since HDF5-1.10.1 release
(RAW - 2017/11/03, HDFFV-10318)
- - Fortran compilation fails for xlf and CMake builds
+ - Fortran compilation fails for xlf and CMake builds.
Fixed CMake shared library build for H5match_types and modules
(MSB - 2017/12/19, HDFFV-10363)
- - Shared libraries fail test on OSX with Fortran enabled with CMake
+ - Shared libraries fail test on OSX with Fortran enabled with CMake.
Fixed by removing the F77 use of EQUIVALENCE and COMMON, replaced
using MODULES. Updated CMake.
@@ -851,7 +868,7 @@ Bug Fixes since HDF5-1.10.1 release
- h5dump
- the tools library will hide the error stack during file open.
+ The tools library will hide the error stack during file open.
While this is preferable almost always, there are reasons to enable
display of the error stack when a tool will not open a file. Adding an
@@ -889,9 +906,10 @@ Bug Fixes since HDF5-1.10.1 release
- h5repack
- h5repack failed to handle more then 9 chars for int conversion.
+ h5repack failed to handle command line parameters for customer filters.
- User defined filter parameter conversions would fail for integers
+ User defined filter parameter conversions would fail whenintegers were
+ represented on the command line with character string
larger then 9 characters. Increased local variable array for storing
the current command line parameter to prevent buffer overflows.
@@ -903,10 +921,9 @@ Bug Fixes since HDF5-1.10.1 release
Reworked solution for HDFFV-8625 and HDFFV-8639. Implemented the check
for string objects of same type in the diff_can_type function by
- adding an if(tclass1 == H5T_STRING) block. This if block moves the
+ adding an if(tclass1 == H5T_STRING) block. This "if block" moves the
same check that was added for attributes to this function, which is
- used by all object types. This function also handles complex type
- structures.
+ used by all object types. This function handles complex type structures.
Also added a new test file in h5diffgenttest for testing this issue
and removed the temporary files used in the test scripts.
@@ -916,7 +933,7 @@ Bug Fixes since HDF5-1.10.1 release
h5repack failed to copy a dataset with existing filter.
- Reworked code for h5repack and h5diff code in tools library. Added
+ Reworked code for h5repack and h5diff code in the tools library. Added
improved error handling, cleanup of resources and checks of calls.
Modified H5Zfilter_avail and private function, H5Z_filter_avail.
Moved check for plugin from public to private function. Updated
@@ -1025,7 +1042,7 @@ Bug Fixes since HDF5-1.10.1 release
C++ APIs
--------
- - Removal of memory leaks
+ - Removal of memory leaks.
A private function was inadvertently called, causing memory leaks. This
is now fixed.
@@ -1067,7 +1084,7 @@ Supported Platforms
Version 4.9.3, Version 5.2.0,
Intel(R) C (icc), C++ (icpc), Fortran (icc)
compilers:
- Version 17.0.0.098 Build 20150407
+ Version 17.0.0.098 Build 20160721
MPICH 3.1.4 compiled with GCC 4.9.3
SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc
@@ -1176,7 +1193,7 @@ The following platforms are not supported but have been tested for this release.
Version 17.10-0
Intel(R) C (icc), C++ (icpc), Fortran (icc)
compilers:
- Version 15.0.3.187 (Build 20150407)
+ Version 17.0.4.196 Build 20170411
MPICH 3.1.4 compiled with GCC 4.9.3
Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
@@ -1185,9 +1202,13 @@ The following platforms are not supported but have been tested for this release.
GCC Version 7.1.0
OpenMPI 3.0.0-GCC-7.2.0-2.29
Intel(R) C (icc) and C++ (icpc) compilers
- Version 15.0.3.187 (Build 20150407)
+ Version 17.0.0.098 Build 20160721
with NAG Fortran Compiler Release 6.1(Tozai)
+ Linux 3.10.0-327.10.1.el7 MPICH 3.2 compiled with GCC 5.3.0
+ #1 SMP x86_64 GNU/Linux
+ (moohan)
+
Linux 2.6.32-573.18.1.el6.ppc64 MPICH mpich 3.1.4 compiled with
#1 SMP ppc64 GNU/Linux IBM XL C/C++ for Linux, V13.1
(ostrich) and IBM XL Fortran for Linux, V15.1