summaryrefslogtreecommitdiffstats
diff options
context:
space:
mode:
authorQuincey Koziol <koziol@hdfgroup.org>2010-11-09 02:18:18 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2010-11-09 02:18:18 (GMT)
commit3e1833e1ac910ff1bc66b07f240e550a733be41f (patch)
treee2d70b6d4c451f1ff1ae926f74aa003cd2eb17ce
parent099d2840de991eeb0e90ee75b0daaff6b8eedd69 (diff)
downloadhdf5-3e1833e1ac910ff1bc66b07f240e550a733be41f.zip
hdf5-3e1833e1ac910ff1bc66b07f240e550a733be41f.tar.gz
hdf5-3e1833e1ac910ff1bc66b07f240e550a733be41f.tar.bz2
[svn-r19745] Description:
Bring r19743-19744 from trunk to 1.8 branch: Correct tests to use native datatypes consistently, and also to use "normal" methods for performing collective I/O. Also, minor cleanups for zeroing out buffers, etc. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committested on trunk)
-rw-r--r--src/H5Smpio.c84
-rw-r--r--testpar/t_rank_projection.c233
-rw-r--r--testpar/t_span_tree.c3
3 files changed, 88 insertions, 232 deletions
diff --git a/src/H5Smpio.c b/src/H5Smpio.c
index e9d0541..d6131b9 100644
--- a/src/H5Smpio.c
+++ b/src/H5Smpio.c
@@ -35,6 +35,7 @@
#include "H5Oprivate.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
#include "H5Spkg.h" /* Dataspaces */
+#include "H5Vprivate.h" /* Vector and array functions */
#ifdef H5_HAVE_PARALLEL
@@ -83,7 +84,7 @@ H5S_mpio_all_type(const H5S_t *space, size_t elmt_size,
HDassert(space);
/* Just treat the entire extent as a block of bytes */
- if((snelmts = H5S_GET_EXTENT_NPOINTS(space)) < 0)
+ if((snelmts = (hssize_t)H5S_GET_EXTENT_NPOINTS(space)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection")
H5_ASSIGN_OVERFLOW(nelmts, snelmts, hssize_t, hsize_t);
@@ -160,14 +161,15 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
hsize_t count;
} d[H5S_MAX_RANK];
- int i;
- int offset[H5S_MAX_RANK];
- int max_xtent[H5S_MAX_RANK];
+ hsize_t offset[H5S_MAX_RANK];
+ hsize_t max_xtent[H5S_MAX_RANK];
H5S_hyper_dim_t *diminfo; /* [rank] */
- int rank;
+ unsigned rank;
int block_length[3];
MPI_Datatype inner_type, outer_type, old_types[3];
MPI_Aint extent_len, displacement[3];
+ unsigned u; /* Local index variable */
+ int i; /* Local index variable */
int mpi_code; /* MPI return code */
herr_t ret_value = SUCCEED;
@@ -192,66 +194,68 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
if(sel_iter.u.hyp.iter_rank != 0 && sel_iter.u.hyp.iter_rank < space->extent.rank) {
/* Flattened selection */
rank = sel_iter.u.hyp.iter_rank;
- HDassert(rank >= 0 && rank <= H5S_MAX_RANK); /* within array bounds */
+ HDassert(rank <= H5S_MAX_RANK); /* within array bounds */
#ifdef H5S_DEBUG
if(H5DEBUG(S))
HDfprintf(H5DEBUG(S), "%s: Flattened selection\n",FUNC);
#endif
- for(i = 0; i < rank; ++i) {
- d[i].start = diminfo[i].start + sel_iter.u.hyp.sel_off[i];
- d[i].strid = diminfo[i].stride;
- d[i].block = diminfo[i].block;
- d[i].count = diminfo[i].count;
- d[i].xtent = sel_iter.u.hyp.size[i];
+ for(u = 0; u < rank; ++u) {
+ H5_CHECK_OVERFLOW(diminfo[u].start, hsize_t, hssize_t)
+ d[u].start = (hssize_t)diminfo[u].start + sel_iter.u.hyp.sel_off[u];
+ d[u].strid = diminfo[u].stride;
+ d[u].block = diminfo[u].block;
+ d[u].count = diminfo[u].count;
+ d[u].xtent = sel_iter.u.hyp.size[u];
#ifdef H5S_DEBUG
if(H5DEBUG(S)){
HDfprintf(H5DEBUG(S), "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
- FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
- if (i==0)
- HDfprintf(H5DEBUG(S), " rank=%d\n", rank );
+ FUNC, d[u].start, d[u].strid, d[u].count, d[u].block, d[u].xtent );
+ if (u==0)
+ HDfprintf(H5DEBUG(S), " rank=%u\n", rank );
else
HDfprintf(H5DEBUG(S), "\n" );
}
#endif
- if(0 == d[i].block)
+ if(0 == d[u].block)
goto empty;
- if(0 == d[i].count)
+ if(0 == d[u].count)
goto empty;
- if(0 == d[i].xtent)
+ if(0 == d[u].xtent)
goto empty;
} /* end for */
} /* end if */
else {
/* Non-flattened selection */
rank = space->extent.rank;
- HDassert(rank >= 0 && rank <= H5S_MAX_RANK); /* within array bounds */
+ HDassert(rank <= H5S_MAX_RANK); /* within array bounds */
if(0 == rank)
goto empty;
#ifdef H5S_DEBUG
if(H5DEBUG(S))
HDfprintf(H5DEBUG(S),"%s: Non-flattened selection\n",FUNC);
#endif
- for(i = 0; i < rank; ++i) {
- d[i].start = diminfo[i].start + space->select.offset[i];
- d[i].strid = diminfo[i].stride;
- d[i].block = diminfo[i].block;
- d[i].count = diminfo[i].count;
- d[i].xtent = space->extent.size[i];
+ for(u = 0; u < rank; ++u) {
+ H5_CHECK_OVERFLOW(diminfo[u].start, hsize_t, hssize_t)
+ d[u].start = (hssize_t)diminfo[u].start + space->select.offset[u];
+ d[u].strid = diminfo[u].stride;
+ d[u].block = diminfo[u].block;
+ d[u].count = diminfo[u].count;
+ d[u].xtent = space->extent.size[u];
#ifdef H5S_DEBUG
if(H5DEBUG(S)){
HDfprintf(H5DEBUG(S), "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
- FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
- if (i==0)
- HDfprintf(H5DEBUG(S), " rank=%d\n", rank );
+ FUNC, d[u].start, d[u].strid, d[u].count, d[u].block, d[u].xtent );
+ if (u==0)
+ HDfprintf(H5DEBUG(S), " rank=%u\n", rank );
else
HDfprintf(H5DEBUG(S), "\n" );
}
#endif
- if(0 == d[i].block)
+ if(0 == d[u].block)
goto empty;
- if(0 == d[i].count)
+ if(0 == d[u].count)
goto empty;
- if(0 == d[i].xtent)
+ if(0 == d[u].xtent)
goto empty;
} /* end for */
} /* end else */
@@ -264,17 +268,17 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
max_xtent[rank - 1] = d[rank - 1].xtent;
#ifdef H5S_DEBUG
if(H5DEBUG(S)) {
- i=rank-1;
- HDfprintf(H5DEBUG(S), " offset[%2d]=%d; max_xtent[%2d]=%d\n",
+ i = ((int)rank) - 1;
+ HDfprintf(H5DEBUG(S), " offset[%2d]=%Hu; max_xtent[%2d]=%Hu\n",
i, offset[i], i, max_xtent[i]);
}
#endif
- for(i = rank - 2; i >= 0; --i) {
+ for(i = ((int)rank) - 2; i >= 0; --i) {
offset[i] = offset[i + 1] * d[i + 1].xtent;
max_xtent[i] = max_xtent[i + 1] * d[i].xtent;
#ifdef H5S_DEBUG
if(H5DEBUG(S))
- HDfprintf(H5DEBUG(S), " offset[%2d]=%d; max_xtent[%2d]=%d\n",
+ HDfprintf(H5DEBUG(S), " offset[%2d]=%Hu; max_xtent[%2d]=%Hu\n",
i, offset[i], i, max_xtent[i]);
#endif
} /* end for */
@@ -290,7 +294,7 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
#ifdef H5S_DEBUG
if(H5DEBUG(S)) {
HDfprintf(H5DEBUG(S), "%s: Making contig type %Zu MPI_BYTEs\n", FUNC, elmt_size);
- for (i=rank-1; i>=0; --i)
+ for(i = ((int)rank) - 1; i >= 0; --i)
HDfprintf(H5DEBUG(S), "d[%d].xtent=%Hu \n", i, d[i].xtent);
}
#endif
@@ -301,7 +305,7 @@ H5S_mpio_hyper_type(const H5S_t *space, size_t elmt_size,
* Construct the type by walking the hyperslab dims
* from the inside out:
*******************************************************/
- for(i = rank - 1; i >= 0; --i) {
+ for(i = ((int)rank) - 1; i >= 0; --i) {
#ifdef H5S_DEBUG
if(H5DEBUG(S))
HDfprintf(H5DEBUG(S), "%s: Dimension i=%d \n"
@@ -538,7 +542,8 @@ H5S_obtain_datatype(const hsize_t *down, H5S_hyper_span_t *span,
/* Store displacement & block length */
disp[outercount] = (MPI_Aint)elmt_size * tspan->low;
- blocklen[outercount] = tspan->nelem;
+ H5_CHECK_OVERFLOW(tspan->nelem, hsize_t, int)
+ blocklen[outercount] = (int)tspan->nelem;
tspan = tspan->next;
outercount++;
@@ -710,12 +715,15 @@ H5S_mpio_space_type(const H5S_t *space, size_t elmt_size,
} /* end else */
break;
+ case H5S_SEL_ERROR:
+ case H5S_SEL_N:
default:
HDassert("unknown selection type" && 0);
break;
} /* end switch */
break;
+ case H5S_NO_CLASS:
default:
HDassert("unknown data space type" && 0);
break;
diff --git a/testpar/t_rank_projection.c b/testpar/t_rank_projection.c
index 16d8c53..c0b0d19 100644
--- a/testpar/t_rank_projection.c
+++ b/testpar/t_rank_projection.c
@@ -249,50 +249,20 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
/* initialize the buffers */
ptr_0 = small_ds_buf_0;
- ptr_1 = small_ds_buf_1;
- ptr_2 = small_ds_buf_2;
-
- for ( i = 0; i < (int)small_ds_size; i++ ) {
-
- *ptr_0 = (uint32_t)i;
- *ptr_1 = 0;
- *ptr_2 = 0;
-
- ptr_0++;
- ptr_1++;
- ptr_2++;
- }
-
- ptr_0 = small_ds_slice_buf;
+ for(i = 0; i < (int)small_ds_size; i++)
+ *ptr_0++ = (uint32_t)i;
+ HDmemset(small_ds_buf_1, 0, sizeof(uint32_t) * small_ds_size);
+ HDmemset(small_ds_buf_2, 0, sizeof(uint32_t) * small_ds_size);
- for ( i = 0; i < (int)small_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(small_ds_slice_buf, 0, sizeof(uint32_t) * small_ds_slice_size);
ptr_0 = large_ds_buf_0;
- ptr_1 = large_ds_buf_1;
- ptr_2 = large_ds_buf_2;
-
- for ( i = 0; i < (int)large_ds_size; i++ ) {
-
- *ptr_0 = (uint32_t)i;
- *ptr_1 = 0;
- *ptr_2 = 0;
-
- ptr_0++;
- ptr_1++;
- ptr_2++;
- }
-
- ptr_0 = large_ds_slice_buf;
+ for(i = 0; i < (int)large_ds_size; i++)
+ *ptr_0++ = (uint32_t)i;
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
+ HDmemset(large_ds_buf_2, 0, sizeof(uint32_t) * large_ds_size);
- for ( i = 0; i < (int)large_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(large_ds_slice_buf, 0, sizeof(uint32_t) * large_ds_slice_size);
filename = (const char *)GetTestParameters();
HDassert( filename != NULL );
@@ -397,28 +367,6 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
"H5Screate_simple() large_ds_slice_sid succeeded");
- /* Select the entire extent of the full small ds, and ds slice dataspaces */
- ret = H5Sselect_all(full_mem_small_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_mem_small_ds_sid) succeeded");
-
- ret = H5Sselect_all(full_file_small_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_file_small_ds_sid) succeeded");
-
- ret = H5Sselect_all(small_ds_slice_sid);
- VRFY((ret != FAIL), "H5Sselect_all(small_ds_slice_sid) succeeded");
-
-
- /* Select the entire extent of the full large ds, and ds slice dataspaces */
- ret = H5Sselect_all(full_mem_large_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_mem_large_ds_sid) succeeded");
-
- ret = H5Sselect_all(full_file_large_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_file_large_ds_sid) succeeded");
-
- ret = H5Sselect_all(large_ds_slice_sid);
- VRFY((ret != FAIL), "H5Sselect_all(large_ds_slice_sid) succeeded");
-
-
/* if chunk edge size is greater than zero, set up the small and
* large data set creation property lists to specify chunked
* datasets.
@@ -491,14 +439,9 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
- ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
- VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
-
- if ( ! use_collective_io ) {
-
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,
- H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0), "H5Pset_dxpl_mpio_collective_opt() suceeded");
+ if(use_collective_io) {
+ ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
}
/* setup selection to write initial data to the small and large data sets */
@@ -735,13 +678,7 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
}
/* zero out the buffer we will be reading into */
- ptr_0 = small_ds_slice_buf;
-
- for ( i = 0; i < (int)small_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(small_ds_slice_buf, 0, sizeof(uint32_t) * small_ds_slice_size);
#if CONTIG_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
HDfprintf(stdout,
@@ -924,12 +861,7 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
#endif
/* zero out the in memory large ds */
- ptr_1 = large_ds_buf_1;
- for ( n = 0; n < (int)large_ds_size; n++ ) {
-
- *ptr_1 = 0;
- ptr_1++;
- }
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
/* set up start, stride, count, and block -- note that we will
* change start[] so as to read slices of the large cube.
@@ -1171,12 +1103,7 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
}
/* zero out the in memory small ds */
- ptr_1 = small_ds_buf_1;
- for ( n = 0; n < (int)small_ds_size; n++ ) {
-
- *ptr_1 = 0;
- ptr_1++;
- }
+ HDmemset(small_ds_buf_1, 0, sizeof(uint32_t) * small_ds_size);
#if CONTIG_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
@@ -1428,12 +1355,7 @@ contig_hyperslab_dr_pio_test__run_test(const int test_num,
}
/* zero out the in memory large ds */
- ptr_1 = large_ds_buf_1;
- for ( n = 0; n < (int)large_ds_size; n++ ) {
-
- *ptr_1 = 0;
- ptr_1++;
- }
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
#if CONTIG_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
HDfprintf(stdout,
@@ -1734,7 +1656,7 @@ contig_hyperslab_dr_pio_test(void)
int skip_counters[4] = {0, 0, 0, 0};
int tests_skiped[4] = {0, 0, 0, 0};
int mpi_result;
- hid_t dset_type = H5T_STD_U32LE;
+ hid_t dset_type = H5T_NATIVE_UINT;
#ifdef H5_HAVE_GETTIMEOFDAY
hbool_t time_tests = TRUE;
hbool_t display_skips = FALSE;
@@ -1760,6 +1682,8 @@ contig_hyperslab_dr_pio_test(void)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
#endif /* H5_HAVE_GETTIMEOFDAY */
+ HDcompile_assert(sizeof(uint32_t) == sizeof(unsigned));
+
local_express_test = GetTestExpress();
mpi_result = MPI_Allreduce((void *)&local_express_test,
@@ -2678,50 +2602,20 @@ checker_board_hyperslab_dr_pio_test__run_test(const int test_num,
/* initialize the buffers */
ptr_0 = small_ds_buf_0;
- ptr_1 = small_ds_buf_1;
- ptr_2 = small_ds_buf_2;
+ for(i = 0; i < (int)small_ds_size; i++)
+ *ptr_0++ = (uint32_t)i;
+ HDmemset(small_ds_buf_1, 0, sizeof(uint32_t) * small_ds_size);
+ HDmemset(small_ds_buf_2, 0, sizeof(uint32_t) * small_ds_size);
- for ( i = 0; i < (int)small_ds_size; i++ ) {
-
- *ptr_0 = (uint32_t)i;
- *ptr_1 = 0;
- *ptr_2 = 0;
-
- ptr_0++;
- ptr_1++;
- ptr_2++;
- }
-
- ptr_0 = small_ds_slice_buf;
-
- for ( i = 0; i < (int)small_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)i;
- ptr_0++;
- }
+ HDmemset(small_ds_slice_buf, 0, sizeof(uint32_t) * small_ds_slice_size);
ptr_0 = large_ds_buf_0;
- ptr_1 = large_ds_buf_1;
- ptr_2 = large_ds_buf_2;
+ for(i = 0; i < (int)large_ds_size; i++)
+ *ptr_0++ = (uint32_t)i;
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
+ HDmemset(large_ds_buf_2, 0, sizeof(uint32_t) * large_ds_size);
- for ( i = 0; i < (int)large_ds_size; i++ ) {
-
- *ptr_0 = (uint32_t)i;
- *ptr_1 = 0;
- *ptr_2 = 0;
-
- ptr_0++;
- ptr_1++;
- ptr_2++;
- }
-
- ptr_0 = large_ds_slice_buf;
-
- for ( i = 0; i < (int)large_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(large_ds_slice_buf, 0, sizeof(uint32_t) * large_ds_slice_size);
filename = (const char *)GetTestParameters();
HDassert( filename != NULL );
@@ -2838,28 +2732,6 @@ checker_board_hyperslab_dr_pio_test__run_test(const int test_num,
"H5Screate_simple() large_ds_slice_sid succeeded");
- /* Select the entire extent of the full small ds, and ds slice dataspaces */
- ret = H5Sselect_all(full_mem_small_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_mem_small_ds_sid) succeeded");
-
- ret = H5Sselect_all(full_file_small_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_file_small_ds_sid) succeeded");
-
- ret = H5Sselect_all(small_ds_slice_sid);
- VRFY((ret != FAIL), "H5Sselect_all(small_ds_slice_sid) succeeded");
-
-
- /* Select the entire extent of the full large ds, and ds slice dataspaces */
- ret = H5Sselect_all(full_mem_large_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_mem_large_ds_sid) succeeded");
-
- ret = H5Sselect_all(full_file_large_ds_sid);
- VRFY((ret != FAIL), "H5Sselect_all(full_file_large_ds_sid) succeeded");
-
- ret = H5Sselect_all(large_ds_slice_sid);
- VRFY((ret != FAIL), "H5Sselect_all(large_ds_slice_sid) succeeded");
-
-
/* if chunk edge size is greater than zero, set up the small and
* large data set creation property lists to specify chunked
* datasets.
@@ -2933,14 +2805,9 @@ checker_board_hyperslab_dr_pio_test__run_test(const int test_num,
xfer_plist = H5Pcreate(H5P_DATASET_XFER);
VRFY((xfer_plist >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
- ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
- VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
-
- if ( ! use_collective_io ) {
-
- ret = H5Pset_dxpl_mpio_collective_opt(xfer_plist,
- H5FD_MPIO_INDIVIDUAL_IO);
- VRFY((ret>= 0), "H5Pset_dxpl_mpio_collective_opt() suceeded");
+ if(use_collective_io) {
+ ret = H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
}
/* setup selection to write initial data to the small and large data sets */
@@ -3172,14 +3039,7 @@ checker_board_hyperslab_dr_pio_test__run_test(const int test_num,
sel_start);
/* zero out the buffer we will be reading into */
-
- ptr_0 = small_ds_slice_buf;
-
- for ( i = 0; i < (int)small_ds_slice_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(small_ds_slice_buf, 0, sizeof(uint32_t) * small_ds_slice_size);
#if CHECKER_BOARD_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
HDfprintf(stdout, "%s:%d: initial small_ds_slice_buf = ",
@@ -3386,12 +3246,7 @@ checker_board_hyperslab_dr_pio_test__run_test(const int test_num,
#endif
/* zero out the buffer we will be reading into */
- ptr_0 = large_ds_buf_1;
- for ( i = 0; i < (int)large_ds_size; i++ ) {
-
- *ptr_0 = (uint32_t)0;
- ptr_0++;
- }
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
/* set up start, stride, count, and block -- note that we will
* change start[] so as to read the slice of the small data set
@@ -3700,12 +3555,7 @@ int m;
}
/* zero out the in memory small ds */
- ptr_1 = small_ds_buf_1;
- for ( n = 0; n < (int)small_ds_size; n++ ) {
-
- *ptr_1 = 0;
- ptr_1++;
- }
+ HDmemset(small_ds_buf_1, 0, sizeof(uint32_t) * small_ds_size);
#if CHECKER_BOARD_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
@@ -3994,12 +3844,7 @@ int m;
}
/* zero out the in memory large ds */
- ptr_1 = large_ds_buf_1;
- for ( n = 0; n < (int)large_ds_size; n++ ) {
-
- *ptr_1 = 0;
- ptr_1++;
- }
+ HDmemset(large_ds_buf_1, 0, sizeof(uint32_t) * large_ds_size);
#if CONTIG_HYPERSLAB_DR_PIO_TEST__RUN_TEST__DEBUG
HDfprintf(stdout,
@@ -4324,7 +4169,7 @@ checker_board_hyperslab_dr_pio_test(void)
int skip_counters[4] = {0, 0, 0, 0};
int tests_skiped[4] = {0, 0, 0, 0};
int mpi_result;
- hid_t dset_type = H5T_STD_U32LE;
+ hid_t dset_type = H5T_NATIVE_UINT;
#ifdef H5_HAVE_GETTIMEOFDAY
hbool_t time_tests = TRUE;
hbool_t display_skips = FALSE;
@@ -4352,6 +4197,8 @@ checker_board_hyperslab_dr_pio_test(void)
local_express_test = GetTestExpress();
+ HDcompile_assert(sizeof(uint32_t) == sizeof(unsigned));
+
mpi_result = MPI_Allreduce((void *)&local_express_test,
(void *)&express_test,
1,
diff --git a/testpar/t_span_tree.c b/testpar/t_span_tree.c
index e54d0a8..2730ea2 100644
--- a/testpar/t_span_tree.c
+++ b/testpar/t_span_tree.c
@@ -2616,10 +2616,11 @@ lower_dim_size_comp_test(void)
/* const char *fcnName = "lower_dim_size_comp_test()"; */
int chunk_edge_size = 0;
int use_collective_io = 1;
- hid_t dset_type = H5T_STD_U32LE;
+ hid_t dset_type = H5T_NATIVE_UINT;
#if 0
sleep(60);
#endif
+ HDcompile_assert(sizeof(uint32_t) == sizeof(unsigned));
for ( use_collective_io = (hbool_t)0;
(int)use_collective_io <= 1;
(hbool_t)(use_collective_io++) ) {