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authorMike McGreevy <mamcgree@hdfgroup.org>2009-10-08 15:17:30 (GMT)
committerMike McGreevy <mamcgree@hdfgroup.org>2009-10-08 15:17:30 (GMT)
commit7ec079a5152761d3e972b2f52c3542f5ec38f89e (patch)
tree4f9693427882de9fda9a36512637a7a569b57a89
parent047ac8f136c58c373dbb0bf04963382ed8930334 (diff)
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[svn-r17616] Purpose:
CFLAGS overhaul Description: Modified the way configure handles CFLAGS. (note: all changes also apply to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS). 1. The configure process will now always preserve a user's CFLAGS environment variable setup. Any additional flags necessary for compilation added at configure time will be passed into the Makefiles as AM_CFLAGS, which is an automake construct to be used in addition to CFLAGS. This will allow a user to have the final say, as CFLAGS will always appear later in the compile line than AM_CFLAGS. Additionally, setting CFLAGS during make will no longer completely erase all flags set by configure, since they're maintained in AM_CFLAGS. 2. Additionally, where possible, flags previously being assigned directly into CFLAGS (and thus propagating into h5cc) have now been redirected into H5_CFLAGS, so they're used ONLY for compiling hdf5, and not embedded into the h5cc wrapper script as well. *Note that H5_CFLAGS ultimately is assigned into AM_CFLAGS for use in the Makefiles. Complete description of changes and build process will be included in a Configure Document that Elena and I are working on. 3. Removed unsupported config files. This includes: config/dec-osf* config/hpux11.00 config/irix5.x config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos* 4. Modified configure summary to display additional values. Specifically, appropriate AM_* variables are being shown, as well as H5_FCFLAGS and H5_CXXFLAGS, which were for some reason not already present. Tested: - H5committest - Tested on all THG / NCSA machines, using several combinations of the more prominent configure options (c++, fortran, szip, threadsafe, parallel, et cetera). (Thanks to Quincey for rysnc testing setup!) - With regards to new automated testing, anything *necessary* for compilation will be caught by the daily tests as it stands now. (i.e., if LDFLAGS is not properly set when szip is used, linking will fail). Additionally, with regards to which flags get into h5cc, if any *necessary* flags have been improperly removed, then daily tests should fail during make installcheck. Additional machine-specific desired behaviors and/or checks may have to be set up separately within the daily tests, so this is something to work on.
-rw-r--r--Makefile.in21
-rw-r--r--c++/Makefile.in21
-rw-r--r--c++/examples/Makefile.in21
-rw-r--r--c++/src/Makefile.am4
-rw-r--r--c++/src/Makefile.in29
-rwxr-xr-xc++/src/h5c++.in6
-rw-r--r--c++/test/Makefile.am2
-rw-r--r--c++/test/Makefile.in27
-rw-r--r--config/BlankForm18
-rw-r--r--config/apple3
-rw-r--r--config/commence.am16
-rw-r--r--config/craynv34
-rw-r--r--config/dec-flags8
-rw-r--r--config/dec-osf4.x37
-rw-r--r--config/dec-osf5.x40
-rw-r--r--config/freebsd2
-rw-r--r--config/hpux11.00101
-rw-r--r--config/hpux11.2314
-rw-r--r--config/i686-pc-cygwin4
-rw-r--r--config/ia64-linux-gnu12
-rw-r--r--config/intel-fflags2
-rw-r--r--config/irix5.x94
-rw-r--r--config/irix6.x6
-rw-r--r--config/nec-superux14.128
-rw-r--r--config/pgi-flags2
-rw-r--r--config/powerpc-ibm-aix4.x120
-rw-r--r--config/powerpc-ibm-aix5.x8
-rw-r--r--config/rs6000-ibm-aix4.x43
-rw-r--r--config/solaris2.x4
-rw-r--r--config/sv1-cray28
-rw-r--r--config/unicos165
-rw-r--r--config/unicos10.0.X201
-rw-r--r--config/unicosmk168
-rw-r--r--config/unicosmk2.0.5.X170
-rw-r--r--config/unicosmk2.0.6.X203
-rw-r--r--config/unicosmk2.0.X170
-rw-r--r--config/x86_64-redstorm-linux-gnu2
-rwxr-xr-xconfigure153
-rw-r--r--configure.in109
-rw-r--r--examples/Makefile.in21
-rw-r--r--fortran/Makefile.in21
-rw-r--r--fortran/examples/Makefile.in21
-rw-r--r--fortran/src/Makefile.am6
-rw-r--r--fortran/src/Makefile.in35
-rwxr-xr-xfortran/src/h5fc.in4
-rw-r--r--fortran/test/Makefile.am4
-rw-r--r--fortran/test/Makefile.in37
-rw-r--r--fortran/testpar/Makefile.am4
-rw-r--r--fortran/testpar/Makefile.in42
-rwxr-xr-xhl/Makefile.in21
-rw-r--r--hl/c++/Makefile.in21
-rw-r--r--hl/c++/examples/Makefile.in21
-rw-r--r--hl/c++/src/Makefile.am4
-rw-r--r--hl/c++/src/Makefile.in29
-rw-r--r--hl/c++/test/Makefile.am2
-rw-r--r--hl/c++/test/Makefile.in27
-rw-r--r--hl/examples/Makefile.in21
-rw-r--r--hl/fortran/Makefile.in21
-rw-r--r--hl/fortran/examples/Makefile.in21
-rw-r--r--hl/fortran/src/Makefile.am6
-rw-r--r--hl/fortran/src/Makefile.in35
-rw-r--r--hl/fortran/test/Makefile.am6
-rw-r--r--hl/fortran/test/Makefile.in37
-rw-r--r--hl/src/Makefile.am4
-rw-r--r--hl/src/Makefile.in28
-rw-r--r--hl/test/Makefile.am2
-rw-r--r--hl/test/Makefile.in29
-rw-r--r--hl/tools/Makefile.in21
-rw-r--r--hl/tools/gif2h5/Makefile.am4
-rw-r--r--hl/tools/gif2h5/Makefile.in25
-rw-r--r--perform/Makefile.am4
-rw-r--r--perform/Makefile.in25
-rw-r--r--release_docs/RELEASE.txt10
-rwxr-xr-xsrc/Makefile.am4
-rw-r--r--src/Makefile.in25
-rw-r--r--src/libhdf5.settings.in21
-rw-r--r--test/Makefile.in21
-rw-r--r--testpar/Makefile.in21
-rw-r--r--tools/Makefile.in21
-rw-r--r--tools/h5copy/Makefile.am2
-rw-r--r--tools/h5copy/Makefile.in23
-rw-r--r--tools/h5diff/Makefile.am2
-rw-r--r--tools/h5diff/Makefile.in23
-rw-r--r--tools/h5dump/Makefile.am2
-rw-r--r--tools/h5dump/Makefile.in23
-rw-r--r--tools/h5import/Makefile.am2
-rwxr-xr-xtools/h5import/Makefile.in23
-rw-r--r--tools/h5jam/Makefile.am4
-rw-r--r--tools/h5jam/Makefile.in25
-rw-r--r--tools/h5ls/Makefile.am2
-rw-r--r--tools/h5ls/Makefile.in23
-rw-r--r--tools/h5repack/Makefile.am2
-rw-r--r--tools/h5repack/Makefile.in23
-rw-r--r--tools/h5stat/Makefile.am2
-rw-r--r--tools/h5stat/Makefile.in23
-rw-r--r--tools/lib/Makefile.in21
-rw-r--r--tools/misc/Makefile.am6
-rw-r--r--tools/misc/Makefile.in27
-rwxr-xr-xtools/misc/h5cc.in6
99 files changed, 991 insertions, 2101 deletions
diff --git a/Makefile.in b/Makefile.in
index b7cf113..e0403bf 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -137,6 +137,16 @@ distcleancheck_listfiles = find . -type f -print
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -150,21 +160,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -187,7 +194,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/c++/Makefile.in b/c++/Makefile.in
index 0c4531e..599ac02 100644
--- a/c++/Makefile.in
+++ b/c++/Makefile.in
@@ -110,6 +110,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -123,21 +133,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -160,7 +167,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in
index 00dc185..43296c6 100644
--- a/c++/examples/Makefile.in
+++ b/c++/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/c++/src/Makefile.am b/c++/src/Makefile.am
index c18b990..5cde27b 100644
--- a/c++/src/Makefile.am
+++ b/c++/src/Makefile.am
@@ -28,12 +28,12 @@ INCLUDES=-I$(top_srcdir)/src
lib_LTLIBRARIES=libhdf5_cpp.la
# Add libtool numbers to the HDF5 C++ library (from config/lt_vers.am)
-libhdf5_cpp_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_cpp_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Shared C++ libraries aren't universally supported.
if CXX_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
bin_SCRIPTS=h5c++
diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in
index 9f0a3a9..4d49056 100644
--- a/c++/src/Makefile.in
+++ b/c++/src/Makefile.in
@@ -58,6 +58,9 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am \
$(top_srcdir)/config/lt_vers.am
+
+# Shared C++ libraries aren't universally supported.
+@CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
TESTS =
subdir = c++/src
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
@@ -129,6 +132,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -142,21 +155,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -179,7 +189,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -390,10 +400,7 @@ INCLUDES = -I$(top_srcdir)/src
lib_LTLIBRARIES = libhdf5_cpp.la
# Add libtool numbers to the HDF5 C++ library (from config/lt_vers.am)
-libhdf5_cpp_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
-
-# Shared C++ libraries aren't universally supported.
-@CXX_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
+libhdf5_cpp_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
bin_SCRIPTS = h5c++
# Source files for the library
diff --git a/c++/src/h5c++.in b/c++/src/h5c++.in
index 5aa08cc..6620e40 100755
--- a/c++/src/h5c++.in
+++ b/c++/src/h5c++.in
@@ -56,9 +56,9 @@ get_output_file="no"
SHOW="eval"
CXXBASE="@CXX@"
CXXLINKERBASE="@CXX@"
-CXXFLAGS="@CXXFLAGS@"
-CPPFLAGS="@CPPFLAGS@"
-LDFLAGS="@LDFLAGS@"
+CXXFLAGS="@AM_CXXFLAGS@ @CXXFLAGS@"
+CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@"
+LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
LIBS="@LIBS@"
CXX="${HDF5_CXX:-$CXXBASE}"
diff --git a/c++/test/Makefile.am b/c++/test/Makefile.am
index 058f925..7799fd6 100644
--- a/c++/test/Makefile.am
+++ b/c++/test/Makefile.am
@@ -26,7 +26,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/c++/src
# Shared C++ libraries aren't universally supported.
if CXX_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# These are our main targets. They should be listed in the order to be
diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in
index 3dff900..909abb8 100644
--- a/c++/test/Makefile.in
+++ b/c++/test/Makefile.in
@@ -53,6 +53,9 @@ host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
+
+# Shared C++ libraries aren't universally supported.
+@CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
check_PROGRAMS = $(am__EXEEXT_1)
TESTS = $(check_PROGRAMS)
subdir = c++/test
@@ -99,6 +102,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -112,21 +125,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -149,7 +159,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -350,9 +360,6 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Include src, test, and c++/src directories
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/c++/src
-# Shared C++ libraries aren't universally supported.
-@CXX_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
-
# These are our main targets. They should be listed in the order to be
# executed, generally most specific tests to least specific tests.
TEST_PROG = dsets testhdf5
diff --git a/config/BlankForm b/config/BlankForm
index a70762c..31116bf 100644
--- a/config/BlankForm
+++ b/config/BlankForm
@@ -72,7 +72,7 @@ fi
# `-pg'). This may or may not include debugging
# or production flags.
#
-# CFLAGS Flags can be added to this variable which
+# H5_CFLAGS Flags can be added to this variable which
# might already be partially initialized. These
# flags will always be passed to the compiler
# and should include switches to turn on full
@@ -81,16 +81,14 @@ fi
# practices resulting in few if any
# warnings.
#
-# Warning flags do not have to be added to CFLAGS
+# Warning flags do not have to be added to H5_CFLAGS
# variable if the compiler is the GNU gcc
# compiler or a descendent of gcc such as EGCS or PGCC.
#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
+# AM_CFLAGS Flags added directly into this variable will
+# be propogated to the compiler wrapper scripts (h5cc,
+# h5c++, et cetera) in addition to being used to compile
+# the library.
#
# These flags should be set according to the compiler being used.
# There are two ways to check the compiler. You can try using `-v' or
@@ -101,7 +99,7 @@ fi
case $CC_BASENAME in
gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
+ H5_CFLAGS="$H5_CFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O3 -fomit-frame-pointer"
@@ -111,7 +109,7 @@ case $CC_BASENAME in
;;
*)
- CFLAGS="$CFLAGS -ansi"
+ H5_CFLAGS="$H5_CFLAGS -ansi"
DEBUG_CFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O"
diff --git a/config/apple b/config/apple
index 14504bb..529e74b 100644
--- a/config/apple
+++ b/config/apple
@@ -51,8 +51,7 @@ fi
case $FC_BASENAME in
xlf)
F9XSUFFIXFLAG="-qsuffix=f=f90 -qfree=f90"
- FCFLAGS="$FCFLAGS ${F9XSUFFIXFLAG}"
- H5_FCFLAGS="$H5_FCFLAGS -qmoddir=./ "
+ H5_FCFLAGS="$H5_FCFLAGS ${F9XSUFFIXFLAG} -qmoddir=./ "
FSEARCH_DIRS="-I./ -I../src"
DEBUG_FCFLAGS="-g"
PROD_FCFLAGS="-O"
diff --git a/config/commence.am b/config/commence.am
index e5e4de9..667dbb2 100644
--- a/config/commence.am
+++ b/config/commence.am
@@ -55,13 +55,15 @@ H5FC_PP=$(bindir)/h5pfc
H5CPP=$(bindir)/h5c++
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-
-CFLAGS=@CFLAGS@ @H5_CFLAGS@
-CPPFLAGS=@CPPFLAGS@ @H5_CPPFLAGS@
-FCFLAGS=@FCFLAGS@ @H5_FCFLAGS@
-CXXFLAGS=@CXXFLAGS@ @H5_CXXFLAGS@
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+
+AM_CFLAGS=@AM_CFLAGS@ @H5_CFLAGS@
+AM_FCFLAGS=@AM_FCFLAGS@ @H5_FCFLAGS@
+AM_CXXFLAGS=@AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_CPPFLAGS=@AM_CPPFLAGS@ @H5_CPPFLAGS@
# The trace script; this is used on source files from the C library to
# insert tracing macros.
diff --git a/config/craynv b/config/craynv
index 9371ac3..479d5c8 100644
--- a/config/craynv
+++ b/config/craynv
@@ -68,25 +68,23 @@ RANLIB=:
# `-pg'). This may or may not include debugging
# or production flags.
#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
+# H5_CFLAGS Flags can be added to this variable which
+# might already be partially initialized. These
+# flags will always be passed to the compiler
+# and should include switches to turn on full
+# warnings. HDF5 attempts to be ANSI and Posix
+# compliant and employ good programming
+# practices resulting in few if any
+# warnings.
#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
+# Warning flags do not have to be added to H5_CFLAGS
+# variable if the compiler is the GNU gcc
+# compiler or a descendent of gcc such as EGCS or PGCC.
#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
+# AM_CFLAGS Flags added directly into this variable will
+# be propogated to the compiler wrapper scripts (h5cc,
+# h5c++, et cetera) in addition to being used to compile
+# the library.
#
# These flags should be set according to the compiler being used.
# There are two ways to check the compiler. You can try using `-v' or
@@ -162,7 +160,7 @@ if test "X-" = "X-$f9x_flags_set"; then
# The -em flag enables .mod files, which is what HDF5 builds.
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -em"
+ H5_FCFLAGS="$H5_FCFLAGS -em"
DEBUG_FCFLAGS="-g"
PROD_FCFLAGS=""
PROFILE_FCFLAGS=""
diff --git a/config/dec-flags b/config/dec-flags
index fe9ee87..8f3fa1a 100644
--- a/config/dec-flags
+++ b/config/dec-flags
@@ -26,7 +26,7 @@
#
if test X = "X$cc_flags_set"; then
cc_vendor=DEC
- cc_version="`$CC $CFLAGS -V 2>&1 |head -1`"
+ cc_version="`$CC $CFLAGS $H5_CFLAGS -V 2>&1 |head -1`"
case "$cc_version" in
DEC*)
cc_version="`echo $cc_version |\
@@ -111,7 +111,7 @@ fi
if test "X-" = "X-$f9x_flags_set"; then
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -Olimit 2048 -std1"
+ H5_FCFLAGS="$H5_FCFLAGS -Olimit 2048 -std1"
DEBUG_FCFLAGS="-Olimit 2048 -std1"
PROD_FCFLAGS="-Olimit 2048 -std1"
PROFILE_FCFLAGS="-Olimit 2048 -std1"
@@ -128,7 +128,7 @@ fi
case $CXX_BASENAME in
g++)
- CXXFLAGS="$CXXFLAGS -Wsign-compare" #Only works for some versions
+ H5_CXXFLAGS="$H5_CXXFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CXXFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
@@ -138,7 +138,7 @@ case $CXX_BASENAME in
;;
*)
- CXXFLAGS="$CXXFLAGS -tlocal -D__USE_STD_IOSTREAM"
+ H5_CXXFLAGS="$H5_CXXFLAGS -tlocal -D__USE_STD_IOSTREAM"
DEBUG_CXXFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O"
diff --git a/config/dec-osf4.x b/config/dec-osf4.x
deleted file mode 100644
index 3b93ed9..0000000
--- a/config/dec-osf4.x
+++ /dev/null
@@ -1,37 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-#
-# See BlankForm in this directory for detailed information.
-
-# The default compiler is `cc'
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-
-# Try GNU compiler flags.
-. $srcdir/config/gnu-flags
-
-# Try native DEC compiler
-ARCH=${ARCH:='-arch host -tune host'}
-. $srcdir/config/dec-flags
-# DEC MPI-IO implementation has a bug,
-#it cannot generate correct MPI derived datatype.
-hdf5_mpi_complex_derived_datatype_works=${hdf5_mpi_complex_derived_datatype_works='no'}
diff --git a/config/dec-osf5.x b/config/dec-osf5.x
deleted file mode 100644
index 2d875ff..0000000
--- a/config/dec-osf5.x
+++ /dev/null
@@ -1,40 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-#
-# See BlankForm in this directory for detailed information.
-
-# The default compiler is `cc'
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-
-# Try GNU compiler flags.
-. $srcdir/config/gnu-flags
-
-# Try native DEC compiler
-ARCH=${ARCH:='-arch host -tune host'}
-. $srcdir/config/dec-flags
-
-# DEC MPI-IO implementation has a bug, it cannot generate correct MPI
-# derived datatype.
-hdf5_mpi_complex_derived_datatype_works=${hdf5_mpi_complex_derived_datatype_works='no'}
-# It does not do all collective IO correctly.
-hdf5_mpi_special_collective_io_works=${hdf5_mpi_special_collective_io_works='no'}
diff --git a/config/freebsd b/config/freebsd
index 8f2e5e4..7452ff0 100644
--- a/config/freebsd
+++ b/config/freebsd
@@ -68,7 +68,7 @@ fi
if test "X-" != "X-$enable_threadsafe"; then
H5_CFLAGS="$H5_CFLAGS -D_THREAD_SAFE"
H5_CXXFLAGS="$H5_CXXFLAGS -D_THREAD_SAFE"
- LDFLAGS="$LDFLAGS -pthread"
+ AM_LDFLAGS="$AM_LDFLAGS -pthread"
fi
# Temporarily hard set this variable. The problem of loss of the last 2 bytes of mantissa
diff --git a/config/hpux11.00 b/config/hpux11.00
deleted file mode 100644
index 1a80091..0000000
--- a/config/hpux11.00
+++ /dev/null
@@ -1,101 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-#
-# See BlankForm in this directory for details.
-
-# Shared libraries don't work for all compilers under HPUX11.00. This is a
-# known bug in libtool (as of June 2006).
-# Disable shared libraries until we can be sure they work.
-enable_shared="${enable_shared:-no}"
-
-# Default compiler is `cc'
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-
-# Flags
-case "X-$CC" in
- X-gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -Ae -Wp,-H65536" #increase the size of macro definition table. For test/dtypes.c
- DEBUG_CFLAGS=-g
- DEBUG_CPPFLAGS="-Ae"
- PROD_CFLAGS=-O
- PROD_CPPFLAGS="-Ae"
- PROFILE_CFLAGS=
- PROFILE_CPPFLAGS="-Ae"
- ;;
-esac
-
-# The default Fortran 90 compiler
-
-if test "X$FC" = "X"; then
- FC=f90
-fi
-
-if test "X$f9x_flags_set" = "X"; then
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -O"
- DEBUG_FCFLAGS="-O"
- PROD_FCFLAGS="-O"
- PROFILE_FCFLAGS="-O"
- f9x_flags_set=yes
-fi
-
-# The default C++ compiler
-
-if test -z "$CXX"; then
- CXX=aCC
- CXX_BASENAME=aCC
-fi
-
-case "X-$CXX" in
- X-aCC)
- # +Z for PIC, +A for using archived libraries
- CXXFLAGS="$CXXFLAGS +Z +A -D_INCLUDE_LONGLONG"
- CFLAGS="$CFLAGS -g +O2"
- DEBUG_CXXFLAGS=-g
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS="-O -s"
- PROD_CPPFLAGS=
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CXXFLAGS="$CXXFLAGS -D_INCLUDE_LONGLONG"
- CFLAGS="$CFLAGS"
- DEBUG_CXXFLAGS=
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS=
- PROD_CPPFLAGS=
- PROFILE_CPPFLAGS=
- ;;
-esac
diff --git a/config/hpux11.23 b/config/hpux11.23
index 0e3bc2a..339cc84 100644
--- a/config/hpux11.23
+++ b/config/hpux11.23
@@ -29,7 +29,7 @@ fi
# Flags
case "X-$CC" in
X-gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
+ H5_CFLAGS="$H5_CFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O3"
@@ -39,7 +39,7 @@ case "X-$CC" in
;;
*)
- CFLAGS="$CFLAGS -Ae -Wp,-H65536" #increase the size of macro definition table. For test/dtypes.c
+ H5_CFLAGS="$H5_CFLAGS -Ae -Wp,-H65536" #increase the size of macro definition table. For test/dtypes.c
DEBUG_CFLAGS=-g
DEBUG_CPPFLAGS="-Ae"
PROD_CFLAGS=-O
@@ -58,7 +58,7 @@ fi
if test "X$f9x_flags_set" = "X"; then
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -O"
+ H5_FCFLAGS="$H5_FCFLAGS -O"
DEBUG_FCFLAGS="-O"
PROD_FCFLAGS="-O"
PROFILE_FCFLAGS="-O"
@@ -75,8 +75,8 @@ fi
case "X-$CXX" in
X-aCC)
# +Z for PIC
- CXXFLAGS="$CXXFLAGS +Z -D_INCLUDE_LONGLONG"
- CFLAGS="$CFLAGS -g +O2"
+ H5_CXXFLAGS="$H5_CXXFLAGS +Z -D_INCLUDE_LONGLONG"
+ H5_CFLAGS="$H5_CFLAGS -g +O2"
DEBUG_CXXFLAGS=-g
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O -s"
@@ -85,8 +85,8 @@ case "X-$CXX" in
;;
*)
- CXXFLAGS="$CXXFLAGS -D_INCLUDE_LONGLONG"
- CFLAGS="$CFLAGS"
+ H5_CXXFLAGS="$H5_CXXFLAGS -D_INCLUDE_LONGLONG"
+ H5_CFLAGS="$H5_CFLAGS"
DEBUG_CXXFLAGS=
DEBUG_CPPFLAGS=
PROD_CXXFLAGS=
diff --git a/config/i686-pc-cygwin b/config/i686-pc-cygwin
index 555d9cd..a51adc3 100644
--- a/config/i686-pc-cygwin
+++ b/config/i686-pc-cygwin
@@ -94,12 +94,12 @@ case $FC_BASENAME in
#
f95)
# Set required flag for compiling C stubs
- CFLAGS="$CFLAGS -DH5_ABSOFT"
+ H5_CFLAGS="$H5_CFLAGS -DH5_ABSOFT"
F9XSUFFIXFLAG=""
# We force compiler to use upper case for external names
# (just in case since this should be a default EIP)
- FCFLAGS="$FCFLAGS -YEXT_NAMES=UCS"
+ H5_FCFLAGS="$H5_FCFLAGS -YEXT_NAMES=UCS"
FSEARCH_DIRS=""
DEBUG_FCFLAGS="-g"
PROD_FCFLAGS="-O"
diff --git a/config/ia64-linux-gnu b/config/ia64-linux-gnu
index 9bebd37..a0b3945 100644
--- a/config/ia64-linux-gnu
+++ b/config/ia64-linux-gnu
@@ -50,7 +50,7 @@ case $CC_BASENAME in
;;
*)
- CFLAGS="$CFLAGS -ansi"
+ H5_CFLAGS="$H5_CFLAGS -ansi"
DEBUG_CFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O"
@@ -76,7 +76,7 @@ case $FC in
# this is for efc v7. Older efc do not work with these.
# -Vaxlib is for non-standard fortran calls like exit().
MORE_FCFLAGS='-fpp -DDEC$=DEC_ -DMS$=MS_ -Vaxlib'
- FCFLAGS="$FCFLAGS $MORE_FCFLAGS"
+ H5_FCFLAGS="$H5_FCFLAGS $MORE_FCFLAGS"
f9x_flags_set=yes
;;
@@ -89,7 +89,7 @@ esac
if test "X$f9x_flags_set" = "X"; then
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS"
+ H5_FCFLAGS="$H5_FCFLAGS"
DEBUG_FCFLAGS=""
PROD_FCFLAGS=""
PROFILE_FCFLAGS=""
@@ -113,7 +113,7 @@ fi
case $CXX_BASENAME in
ecc|icc) # Intel compilers
# Default to C99 standard.
- CXXFLAGS="${CXXFLAGS:--std=c99}"
+ H5_CXXFLAGS="${H5_CXXFLAGS:--std=c99}"
DEBUG_CXXFLAGS="-g -w2 -Wall"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="" #Default optimization O2 is used
@@ -122,7 +122,7 @@ case $CXX_BASENAME in
PROFILE_CPPFLAGS=
;;
g++)
- CXXFLAGS="$CXXFLAGS -Wsign-compare" #Only works for some versions
+ H5_CXXFLAGS="$H5_CXXFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CXXFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
@@ -133,7 +133,7 @@ case $CXX_BASENAME in
*)
# Default to C99 standard.
- CXXFLAGS="${CXXFLAGS:--std=c99}"
+ H5_CXXFLAGS="${H5_CXXFLAGS:--std=c99}"
DEBUG_CXXFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O"
diff --git a/config/intel-fflags b/config/intel-fflags
index 998e569..3e33fc9 100644
--- a/config/intel-fflags
+++ b/config/intel-fflags
@@ -70,7 +70,7 @@ if test "X-ifort" = "X-$f9x_vendor"; then
FC_BASENAME=ifort
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS"
+ H5_FCFLAGS="$H5_FCFLAGS"
# Production
PROD_FCFLAGS="-O3"
diff --git a/config/irix5.x b/config/irix5.x
deleted file mode 100644
index bd8a3be..0000000
--- a/config/irix5.x
+++ /dev/null
@@ -1,94 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-#
-# See BlankForm in this directory for details
-
-# Disable dependency tracking on IRIX unless the user specifically asks for
-# it.
-# IRIX's pmake confuses automake (as of version 1.9) if dependency tracking
-# is enabled and it is not an in-place build. Simply disabling dependency
-# tracking on IRIX is simpler to implement than detecting pmake, detecting
-# when a build is not in-place, and then disabling dependency tracking.
-if test -z "${enable_dependency_tracking}"; then
- enable_dependency_tracking="no"
-fi
-
-# The default compiler is `cc' and there is no ranlib.
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-RANLIB=:
-
-case "X-$CC_BASENAME" in
- X-gcc)
- H5_CFLAGS="$H5_CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- # Do *not* use -ansi because it prevents hdf5 from being able
- # to read modification dates from the file. On some systems it
- # can also result in compile errors in system header files
- # since hdf5 includes a couple non-ANSI header files.
- #CFLAGS="$CFLAGS -ansi"
-
- # Always turn off these compiler warnings:
- H5_CFLAGS="$H5_CFLAGS -woff 799"
-
- # Extra debugging flags
- DEBUG_CFLAGS=-g
- DEBUG_CPPFLAGS=
-
- # Extra production flags
- # Note: higher optimizations relax alignment requirements needed.
- PROD_CFLAGS="-O -s"
- PROD_CPPFLAGS=
-
- # Extra profiling flags
- PROFILE_CFLAGS=-pg
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-# Hard set flag to indicate that the 'unsigned long long' to floating-point
-# value conversion are broken by the compilers (as of 4/27/04 - QAK)
-hdf5_cv_ulong_to_fp_bottom_bit_accurate=${hdf5_cv_ulong_to_fp_bottom_bit_accurate='no'}
-
-# Set flags to avoid conversion between 'long double' and integers because of
-# SGI's compiler problems. For both IRIX64 6.5 and IRIX 6.5, the compilers
-# have the following problems,
-# long double -> signed char : incorrect rounding
-# long double -> unsigned char : incorrect rounding
-# long double -> short : incorrect rounding
-# long double -> unsigned short : incorrect rounding
-# long double -> long or long long: incorrect value
-# long double -> unsigned long or long long : incorrect value
-#
-# long or long long -> long double : correct value but incorrect bit pattern
-# unsigned long or long long -> long double : correct value but incorrect bit pattern
-# (1/5/05 - SLU)
-hdf5_cv_ldouble_to_integer_accurate=${hdf5_cv_ldouble_to_integer_accurate='no'}
-hdf5_cv_integer_to_ldouble_accurate=${hdf5_cv_integer_to_ldouble_accurate='no'}
diff --git a/config/irix6.x b/config/irix6.x
index 05b308c..1f5bbee 100644
--- a/config/irix6.x
+++ b/config/irix6.x
@@ -73,14 +73,14 @@ case "X-$CC_BASENAME" in
# 1429: the `long long' type is not standard
# 1685: turn off warnings about turning off invalid warnings
# 3201: remark - parameter not referenced
- #CFLAGS="$CFLAGS -woff 1174,1429,1209,1196,1685,3201"
+ #H5_CFLAGS="$H5_CFLAGS -woff 1174,1429,1209,1196,1685,3201"
H5_CFLAGS="$H5_CFLAGS -woff 1209,3201"
# Always turn off these compiler warnings for the old compiler:
# 799: the `long long' type is not standard
# 803: turn off warnings about turning off invalid warnings
# 835: __vfork() (this is an SGI config problem)
- #CFLAGS="$CFLAGS -woff 799,803,835"
+ #H5_CFLAGS="$H5_CFLAGS -woff 799,803,835"
# Always turn off these loader warnings:
# (notice the peculiar syntax)
@@ -133,7 +133,7 @@ fi
if test -z "$cxx_flags_set"; then
# -LANG:std required for std use; -ptused causes templates used to be
# instantiated
- CPPFLAGS="$CPPFLAGS -LANG:std"
+ AM_CPPFLAGS="$AM_CPPFLAGS -LANG:std"
H5_CPPFLAGS="$H5_CPPFLAGS -ptused"
# libCio is a default library, since libtool before 1.5 doesn't fully
diff --git a/config/nec-superux14.1 b/config/nec-superux14.1
index 7e2c09f..2ead4d0 100644
--- a/config/nec-superux14.1
+++ b/config/nec-superux14.1
@@ -85,8 +85,8 @@ fi
# PROFILE_CPPFLAGS library suitable for performance testing (like
# `-pg'). This may or may not include debugging
# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
+#
+# H5_CFLAGS Flags can be added to this variable which
# might already be partially initialized. These
# flags will always be passed to the compiler
# and should include switches to turn on full
@@ -95,16 +95,14 @@ fi
# practices resulting in few if any
# warnings.
#
-# Warning flags do not have to be added to CFLAGS
+# Warning flags do not have to be added to H5_CFLAGS
# variable if the compiler is the GNU gcc
# compiler or a descendent of gcc such as EGCS or PGCC.
#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
+# AM_CFLAGS Flags added directly into this variable will
+# be propogated to the compiler wrapper scripts (h5cc,
+# h5c++, et cetera) in addition to being used to compile
+# the library.
#
# These flags should be set according to the compiler being used.
# There are two ways to check the compiler. You can try using `-v' or
@@ -115,7 +113,7 @@ fi
case $CC_BASENAME in
cc)
- CFLAGS="$CFLAGS"
+ H5_CFLAGS="$H5_CFLAGS"
DEBUG_CFLAGS="-Cdebug -g -wall"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-Cnoopt"
@@ -125,7 +123,7 @@ case $CC_BASENAME in
;;
*)
- CFLAGS="$CFLAGS"
+ H5_CFLAGS="$H5_CFLAGS"
DEBUG_CFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CFLAGS=""
@@ -137,21 +135,21 @@ esac
case $CXX_BASENAME in
c++)
- CXXFLAGS="$CXXFLAGS -Tlocal"
+ H5_CXXFLAGS="$H5_CXXFLAGS -Tlocal"
;;
*)
- CXXFLAGS="$CXXFLAGS"
+ H5_CXXFLAGS="$H5_CXXFLAGS"
;;
esac
case $FC_BASENAME in
f90)
- FCFLAGS="$F9XFLAGS"
+ H5_FCFLAGS="$F9XFLAGS"
;;
*)
- FCFLAGS="$F9XFLAGS"
+ H5_FCFLAGS="$F9XFLAGS"
;;
esac
diff --git a/config/pgi-flags b/config/pgi-flags
index 2611a87..2b03f3d 100644
--- a/config/pgi-flags
+++ b/config/pgi-flags
@@ -68,7 +68,7 @@ if test "X-pgcc" = "X-$cc_vendor"; then
#esac
# General
- CFLAGS="$CFLAGS $arch -Minform,warn"
+ H5_CFLAGS="$H5_CFLAGS $arch -Minform,warn"
# Production
# Check for MPI wrapper being used and tweak down compiler options
diff --git a/config/powerpc-ibm-aix4.x b/config/powerpc-ibm-aix4.x
deleted file mode 100644
index b94f3b5..0000000
--- a/config/powerpc-ibm-aix4.x
+++ /dev/null
@@ -1,120 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-
-# What must *always* be present for things to compile correctly?
-#CFLAGS="$CFLAGS -ansi"
-#CPPFLAGS="$CPPFLAGS -I."
-
-# CFLAGS must be set else configure set it to -g
-CFLAGS="$CFLAGS"
-
-# What compiler flags should be used for code development?
-DEBUG_CFLAGS=
-DEBUG_CPPFLAGS=
-
-# What compiler flags should be used for building a production
-# library?
-PROD_CFLAGS=
-PROD_CPPFLAGS=
-
-# What compiler flags enable code profiling?
-PROFILE_CFLAGS=
-PROFILE_CPPFLAGS=
-
-
-#----------------------------------------------------------------------------
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-ac_cv_header_stdc=${ac_cv_header_stdc='yes'}
-ac_cv_header_sys_ioctl_h=${ac_cv_header_sys_ioctl_h=yes}
-RUNPARALLEL=${RUNPARALLEL="MP_PROCS=3 MP_TASKS_PER_NODE=3 poe"}
-
-# cache the sizeof of "standard C types" so that configure can run faster.
-ac_cv_sizeof_char=${ac_cv_sizeof_char=1}
-ac_cv_sizeof_short=${ac_cv_sizeof_short=2}
-ac_cv_sizeof_int=${ac_cv_sizeof_int=4}
-ac_cv_sizeof_long=${ac_cv_sizeof_long=4}
-ac_cv_sizeof_long_long=${ac_cv_sizeof_long_long=8}
-ac_cv_sizeof___int64=${ac_cv_sizeof___int64=8}
-ac_cv_sizeof_float=${ac_cv_sizeof_float=4}
-ac_cv_sizeof_double=${ac_cv_sizeof_double=8}
-ac_cv_sizeof_long_double=${ac_cv_sizeof_long_double=8}
-ac_cv_sizeof_int8_t=${ac_cv_sizeof_int8_t=1}
-ac_cv_sizeof_uint8_t=${ac_cv_sizeof_uint8_t=1}
-ac_cv_sizeof_int_least8_t=${ac_cv_sizeof_int_least8_t=1}
-ac_cv_sizeof_uint_least8_t=${ac_cv_sizeof_uint_least8_t=1}
-ac_cv_sizeof_int_fast8_t=${ac_cv_sizeof_int_fast8_t=1}
-ac_cv_sizeof_uint_fast8_t=${ac_cv_sizeof_uint_fast8_t=4}
-ac_cv_sizeof_int16_t=${ac_cv_sizeof_int16_t=2}
-ac_cv_sizeof_uint16_t=${ac_cv_sizeof_uint16_t=2}
-ac_cv_sizeof_int_least16_t=${ac_cv_sizeof_int_least16_t=2}
-ac_cv_sizeof_uint_least16_t=${ac_cv_sizeof_uint_least16_t=2}
-ac_cv_sizeof_int_fast16_t=${ac_cv_sizeof_int_fast16_t=4}
-ac_cv_sizeof_uint_fast16_t=${ac_cv_sizeof_uint_fast16_t=4}
-ac_cv_sizeof_int32_t=${ac_cv_sizeof_int32_t=4}
-ac_cv_sizeof_uint32_t=${ac_cv_sizeof_uint32_t=4}
-ac_cv_sizeof_int_least32_t=${ac_cv_sizeof_int_least32_t=4}
-ac_cv_sizeof_uint_least32_t=${ac_cv_sizeof_uint_least32_t=4}
-ac_cv_sizeof_int_fast32_t=${ac_cv_sizeof_int_fast32_t=4}
-ac_cv_sizeof_uint_fast32_t=${ac_cv_sizeof_uint_fast32_t=4}
-ac_cv_sizeof_int64_t=${ac_cv_sizeof_int64_t=8}
-ac_cv_sizeof_uint64_t=${ac_cv_sizeof_uint64_t=8}
-ac_cv_sizeof_int_least64_t=${ac_cv_sizeof_int_least64_t=8}
-ac_cv_sizeof_uint_least64_t=${ac_cv_sizeof_uint_least64_t=8}
-ac_cv_sizeof_int_fast64_t=${ac_cv_sizeof_int_fast64_t=8}
-ac_cv_sizeof_uint_fast64_t=${ac_cv_sizeof_uint_fast64_t=8}
-
-# Don't cache size_t and off_t because they depend on if -D_LARGE_FILES is used
-#ac_cv_sizeof_size_t=${ac_cv_sizeof_size_t=4}
-#ac_cv_sizeof_off_t=${ac_cv_sizeof_off_t=8}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=xlf
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- F9XSUFFIXFLAG="-qsuffix=f=f90"
- FCFLAGS="$FCFLAGS -static -O ${F9XSUFFIXFLAG} -qmoddir=./ -k"
- FSEARCH_DIRS="-I./ -I../src"
- DEBUG_FCFLAGS="-O"
- PROD_FCFLAGS="-O"
- PROFILE_FCFLAGS="-O"
- f9x_flags_set=yes
-fi
-
-# The default C++ compiler
-
-# Use AIX supplied C++ compiler by default.
-CXX=${CXX=xlC}
-hdf5_mpi_complex_derived_datatype_works=${hdf5_mpi_complex_derived_datatype_works='no'}
diff --git a/config/powerpc-ibm-aix5.x b/config/powerpc-ibm-aix5.x
index 80925f0..5659728 100644
--- a/config/powerpc-ibm-aix5.x
+++ b/config/powerpc-ibm-aix5.x
@@ -48,7 +48,7 @@ case $CC_BASENAME in
enable_shared="${enable_shared:-no}"
# Use -D_LARGE_FILES by default to support large file size.
# Make sure this is applied to other API compile options such as C++.
- CFLAGS="-qlanglvl=stdc99 -D_LARGE_FILES $CFLAGS"
+ H5_CFLAGS="-qlanglvl=stdc99 -D_LARGE_FILES $H5_CFLAGS"
DEBUG_CFLAGS="-g -qfullpath"
DEBUG_CPPFLAGS=
# -O causes test/dtypes to fail badly. Turn it off for now.
@@ -63,7 +63,7 @@ case $CC_BASENAME in
;;
*)
- CFLAGS="$CFLAGS -ansi"
+ H5_CFLAGS="$H5_CFLAGS -ansi"
DEBUG_CFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O"
@@ -136,7 +136,7 @@ fi
if test "X-" = "X-$f9x_flags_set"; then
F9XSUFFIXFLAG="-qsuffix=f=f90"
- FCFLAGS="$FCFLAGS -static -O ${F9XSUFFIXFLAG} -qmoddir=./ -k"
+ H5_FCFLAGS="$H5_FCFLAGS -static -O ${F9XSUFFIXFLAG} -qmoddir=./ -k"
FSEARCH_DIRS="-I./ -I../src"
DEBUG_FCFLAGS="-O"
PROD_FCFLAGS="-O"
@@ -157,6 +157,6 @@ CXX=${CXX=xlC}
# Added -qweaksymbol to suppress linker messages warning of duplicate
# symbols; these warnings are harmless. - BMR
# Use -D_LARGE_FILES by default to support large file size.
-CXXFLAGS="$CXXFLAGS -qweaksymbol -D_LARGE_FILES"
+H5_CXXFLAGS="$H5_CXXFLAGS -qweaksymbol -D_LARGE_FILES"
diff --git a/config/rs6000-ibm-aix4.x b/config/rs6000-ibm-aix4.x
deleted file mode 100644
index 14885d1..0000000
--- a/config/rs6000-ibm-aix4.x
+++ /dev/null
@@ -1,43 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-#
-# See BlankForm in this directory for details.
-
-# Cross compiling defaults
-ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=xlf
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- F9XSUFFIXFLAG="-qsuffix=f=f90"
- FCFLAGS="$FCFLAGS -static -O ${F9XSUFFIXFLAG} -qmoddir=./ -k"
- FSEARCH_DIRS="-I./ -I../src"
- DEBUG_FCFLAGS="-O"
- PROD_FCFLAGS="-O"
- PROFILE_FCFLAGS="-O"
- f9x_flags_set=yes
-fi
-# IBM MPI-IO doesn't handle complicated derived data type correctly.
-hdf5_mpi_complex_derived_datatype_works=${hdf5_mpi_complex_derived_datatype_works='no'}
diff --git a/config/solaris2.x b/config/solaris2.x
index c81fd61..f5a4df1 100644
--- a/config/solaris2.x
+++ b/config/solaris2.x
@@ -45,7 +45,7 @@ if test "X-" = "X-$cc_flags_set"; then
5.9*)
# Need the xopenmp flag to build the Fortran library
if test X-$enable_fortran = X-yes; then
- LDFLAGS="$LDFLAGS -xopenmp=stubs"
+ AM_LDFLAGS="$AM_LDFLAGS -xopenmp=stubs"
fi
;;
esac
@@ -68,7 +68,7 @@ fi
if test "X-" = "X-$f9x_flags_set"; then
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS"
+ H5_FCFLAGS="$H5_FCFLAGS"
DEBUG_FCFLAGS=""
PROD_FCFLAGS=""
PROFILE_FCFLAGS=""
diff --git a/config/sv1-cray b/config/sv1-cray
index 4e3153f..1bae48d 100644
--- a/config/sv1-cray
+++ b/config/sv1-cray
@@ -73,8 +73,8 @@ RANLIB=:
# PROFILE_CPPFLAGS library suitable for performance testing (like
# `-pg'). This may or may not include debugging
# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
+#
+# H5_CFLAGS Flags can be added to this variable which
# might already be partially initialized. These
# flags will always be passed to the compiler
# and should include switches to turn on full
@@ -83,16 +83,14 @@ RANLIB=:
# practices resulting in few if any
# warnings.
#
-# Warning flags do not have to be added to CFLAGS
+# Warning flags do not have to be added to H5_CFLAGS
# variable if the compiler is the GNU gcc
# compiler or a descendent of gcc such as EGCS or PGCC.
#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
+# AM_CFLAGS Flags added directly into this variable will
+# be propogated to the compiler wrapper scripts (h5cc,
+# h5c++, et cetera) in addition to being used to compile
+# the library.
#
# These flags should be set according to the compiler being used.
# There are two ways to check the compiler. You can try using `-v' or
@@ -103,7 +101,7 @@ RANLIB=:
case $CC_BASENAME in
gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
+ H5_CFLAGS="$H5_CFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O3 -fomit-frame-pointer"
@@ -113,7 +111,7 @@ case $CC_BASENAME in
;;
cc)
- CFLAGS="$CFLAGS"
+ H5_CFLAGS="$H5_CFLAGS"
DEBUG_CFLAGS="-g -h zero"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O2 -h scalar0 -h vector0 -h task1"
@@ -123,7 +121,7 @@ case $CC_BASENAME in
;;
*)
- CFLAGS="$CFLAGS -ansi"
+ H5_CFLAGS="$H5_CFLAGS -ansi"
DEBUG_CFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CFLAGS="-O"
@@ -163,7 +161,7 @@ fi
if test "X-" = "X-$f9x_flags_set"; then
F9XSUFFIXFLAG=""
FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp"
+ H5_FCFLAGS="$H5_FCFLAGS -dp"
DEBUG_FCFLAGS="-dp"
PROD_FCFLAGS="-dp"
PROFILE_FCFLAGS="-dp"
@@ -180,7 +178,7 @@ fi
case $CXX_BASENAME in
g++)
- CXXFLAGS="$CXXFLAGS -Wsign-compare" #Only works for some versions
+ H5_CXXFLAGS="$H5_CXXFLAGS -Wsign-compare" #Only works for some versions
DEBUG_CXXFLAGS="-g -fverbose-asm"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
@@ -190,7 +188,7 @@ case $CXX_BASENAME in
;;
*)
- CXXFLAGS="$CXXFLAGS -h instantiate=used"
+ H5_CXXFLAGS="$H5_CXXFLAGS -h instantiate=used"
DEBUG_CXXFLAGS="-g"
DEBUG_CPPFLAGS=
PROD_CXXFLAGS="-O"
diff --git a/config/unicos b/config/unicos
deleted file mode 100644
index 4c99bcd..0000000
--- a/config/unicos
+++ /dev/null
@@ -1,165 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero -h scalar0"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp"
- DEBUG_FCFLAGS="-dp"
- PROD_FCFLAGS="-dp"
- PROFILE_FCFLAGS="-dp"
- f9x_flags_set=yes
-fi
diff --git a/config/unicos10.0.X b/config/unicos10.0.X
deleted file mode 100644
index 09f5871..0000000
--- a/config/unicos10.0.X
+++ /dev/null
@@ -1,201 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero -h scalar0"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# Hard set the flag to indicate that converting denormalized floating-point
-# values doesn't work.
-hdf5_cv_convert_denormal_float=${hdf5_cv_convert_denormal_float='no'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp"
- DEBUG_FCFLAGS="-dp"
- PROD_FCFLAGS="-dp"
- PROFILE_FCFLAGS="-dp"
- f9x_flags_set=yes
-fi
-
-# The default C++ compiler
-
-if test -z "$CXX"; then
- CXX="CC"
- CXX_BASENAME=CC
-fi
-
-case $CXX_BASENAME in
- g++)
- CXXFLAGS="$CXXFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CXXFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CXXFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CXXFLAGS="$CXXFLAGS -h instantiate=used"
- DEBUG_CXXFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CXXFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
diff --git a/config/unicosmk b/config/unicosmk
deleted file mode 100644
index 7c279a7..0000000
--- a/config/unicosmk
+++ /dev/null
@@ -1,168 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp"
- DEBUG_FCFLAGS="-dp"
- PROD_FCFLAGS="-dp"
- PROFILE_FCFLAGS="-dp"
- f9x_flags_set=yes
-fi
diff --git a/config/unicosmk2.0.5.X b/config/unicosmk2.0.5.X
deleted file mode 100644
index c76cd42..0000000
--- a/config/unicosmk2.0.5.X
+++ /dev/null
@@ -1,170 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- # -Wl passes flags to the linker and -M# will ignore warnings with
- # number #. Warning 405 was stopping the executable from being built.
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp -Wl-M405"
- DEBUG_FCFLAGS=""
- PROD_FCFLAGS=""
- PROFILE_FCFLAGS=""
- f9x_flags_set=yes
-fi
diff --git a/config/unicosmk2.0.6.X b/config/unicosmk2.0.6.X
deleted file mode 100644
index 861b205..0000000
--- a/config/unicosmk2.0.6.X
+++ /dev/null
@@ -1,203 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# Hard set the flag to indicate that converting denormalized floating-point
-# values doesn't work.
-hdf5_cv_convert_denormal_float=${hdf5_cv_convert_denormal_float='no'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- # -Wl passes flags to the linker and -M# will ignore warnings with
- # number #. Warning 405 and 412 were stopping the executable from being built.
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp -Wl-M405,412"
- DEBUG_FCFLAGS=""
- PROD_FCFLAGS=""
- PROFILE_FCFLAGS=""
- f9x_flags_set=yes
-fi
-
-# The default C++ compiler
-
-if test -z "$CXX"; then
- CXX="CC"
- CXX_BASENAME=CC
-fi
-
-case $CXX_BASENAME in
- g++)
- CXXFLAGS="$CXXFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CXXFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CXXFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CXXFLAGS="$CXXFLAGS -h instantiate=used"
- DEBUG_CXXFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CXXFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CXXFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
diff --git a/config/unicosmk2.0.X b/config/unicosmk2.0.X
deleted file mode 100644
index f400a10..0000000
--- a/config/unicosmk2.0.X
+++ /dev/null
@@ -1,170 +0,0 @@
-# -*- shell-script -*-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html. COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page. It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-
-
-# This file is part of the HDF5 build script. It is processed shortly
-# after configure starts and defines, among other things, flags for
-# the various compile modes.
-
-
-#----------------------------------------------------------------------------
-# Compiler flags. The CPPFLAGS values should not include package debug
-# flags like `-DH5G_DEBUG' since these are added with the
-# `--enable-debug' switch of configure.
-#----------------------------------------------------------------------------
-
-
-# Choosing a C Compiler
-# ---------------------
-#
-# The user should be able to specify the compiler by setting the CC
-# environment variable to the name of the compiler and any switches it
-# requires for proper operation. If CC is unset then this script may
-# set it. If CC is unset by time this script completes then configure
-# will try `gcc' and `cc' in that order (perhaps some others too).
-#
-# Note: Code later in this file may depend on the value of $CC_BASENAME
-# in order to distinguish between different compilers when
-# deciding which compiler command-line switches to use. This
-# variable is set based on the incoming value of $CC and is only
-# used within this file.
-
-if test "X-" = "X-$CC"; then
- CC=cc
- CC_BASENAME=cc
-fi
-# no need to use RANLIB
-RANLIB=:
-
-
-# C Compiler and Preprocessor Flags
-# ---------------------------------
-#
-# Flags that end with `_CFLAGS' are always passed to the compiler.
-# Flags that end with `_CPPFLAGS' are passed to the compiler when
-# compiling but not when linking.
-#
-# DEBUG_CFLAGS Flags to pass to the compiler to create a
-# DEBUG_CPPFLAGS library suitable for use with debugging
-# tools. Usually this list will exclude
-# optimization switches (like `-O') and include
-# switches that turn on symbolic debugging
-# support (like `-g').
-#
-# PROD_CFLAGS Flags to pass to the compiler to create a
-# PROD_CPPFLAGS production version of the library. These
-# usualy exclude symbolic debugging switches
-# (like `-g') and include optimization switches
-# (like `-O').
-#
-# PROFILE_CFLAGS Flags to pass to the compiler to create a
-# PROFILE_CPPFLAGS library suitable for performance testing (like
-# `-pg'). This may or may not include debugging
-# or production flags.
-#
-# CFLAGS Flags can be added to this variable which
-# might already be partially initialized. These
-# flags will always be passed to the compiler
-# and should include switches to turn on full
-# warnings. HDF5 attempts to be ANSI and Posix
-# compliant and employ good programming
-# practices resulting in few if any
-# warnings.
-#
-# Warning flags do not have to be added to CFLAGS
-# variable if the compiler is the GNU gcc
-# compiler or a descendent of gcc such as EGCS or PGCC.
-#
-# The CFLAGS should contains *something* or else
-# configure will probably add `-g'. For most
-# systems this isn't a problem but some systems
-# will disable optimizations in favor of the
-# `-g'.
-#
-#
-# These flags should be set according to the compiler being used.
-# There are two ways to check the compiler. You can try using `-v' or
-# `--version' to see if the compiler will print a version string. You
-# can use the value of $CC_BASENAME which is the base name of the
-# first word in $CC (note that the value of CC may have changed
-# above).
-
-case $CC_BASENAME in
- gcc)
- CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
- DEBUG_CFLAGS="-g -fverbose-asm"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O3 -fomit-frame-pointer"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- cc)
- CFLAGS="$CFLAGS"
- DEBUG_CFLAGS="-g -h zero"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O2 -h scalar0"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-
- *)
- CFLAGS="$CFLAGS -ansi"
- DEBUG_CFLAGS="-g"
- DEBUG_CPPFLAGS=
- PROD_CFLAGS="-O"
- PROD_CPPFLAGS=
- PROFILE_CFLAGS="-pg"
- PROFILE_CPPFLAGS=
- ;;
-esac
-
-
-
-# Overriding Configure Tests
-# --------------------------
-#
-# Values for overriding configuration tests when cross compiling.
-# This includes compiling on some machines where the serial front end
-# compiles for a parallel back end.
-
-# Set this to `yes' or `no' depending on whether the target is big
-# endian or little endian.
-#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
-
-# Set this to the width required by printf() to print type `long
-# long'. For instance, if the format would be `%lld' then set it to
-# `ll' or if the format would be `%qd' set it to `q'.
-#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
-
-# The default Fortran 90 compiler
-
-if test "X-" = "X-$FC"; then
- FC=f90
-fi
-
-if test "X-" = "X-$f9x_flags_set"; then
- # -Wl passes flags to the linker and -M# will ignore warnings with
- # number #. Warning 405 was stopping the executable from being built.
- F9XSUFFIXFLAG=""
- FSEARCH_DIRS=""
- FCFLAGS="$FCFLAGS -dp -Wl-M405"
- DEBUG_FCFLAGS=""
- PROD_FCFLAGS=""
- PROFILE_FCFLAGS=""
- f9x_flags_set=yes
-fi
diff --git a/config/x86_64-redstorm-linux-gnu b/config/x86_64-redstorm-linux-gnu
index eb8f520..102e836 100644
--- a/config/x86_64-redstorm-linux-gnu
+++ b/config/x86_64-redstorm-linux-gnu
@@ -33,7 +33,7 @@ if test "X-$enable_parallel" = "X-yes" -o X-$CC_BASENAME = X-mpicc; then
enable_shared="${enable_shared:-no}"
fi
-CFLAGS="$CFLAGS -DRED_STORM"
+H5_CFLAGS="$H5_CFLAGS -DRED_STORM"
# What compiler flags should be used for code development?
DEBUG_CFLAGS=-g
diff --git a/configure b/configure
index 3e92fca..c077ef9 100755
--- a/configure
+++ b/configure
@@ -1,5 +1,5 @@
#! /bin/sh
-# From configure.in Id: configure.in 17582 2009-10-02 02:08:59Z koziol .
+# From configure.in Id: configure.in 17589 2009-10-04 12:56:18Z lrknox .
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.64 for HDF5 1.9.48.
#
@@ -887,6 +887,11 @@ HDF_FORTRAN
STATIC_EXEC
MPE
EXTERNAL_FILTERS
+AM_LDFLAGS
+AM_CPPFLAGS
+AM_CXXFLAGS
+AM_FCFLAGS
+AM_CFLAGS
H5_CXXFLAGS
H5_FCFLAGS
H5_CPPFLAGS
@@ -3872,10 +3877,25 @@ case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
+
+
+
+
+
+
+AM_CFLAGS="${AM_CFLAGS}"
+AM_CXXFLAGS="${AM_CXXFLAGS}"
+AM_FCFLAGS="${AM_FCFLAGS}"
+AM_CPPFLAGS="${AM_CPPFLAGS}"
+AM_LDFLAGS="${AM_LDFLAGS}"
CFLAGS="${CFLAGS}"
-CPPFLAGS="${CPPFLAGS}"
CXXFLAGS="${CXXFLAGS}"
FCFLAGS="${FCFLAGS}"
+CPPFLAGS="${CPPFLAGS}"
+LDFLAGS="${LDFLAGS}"
+
+saved_user_LDFLAGS="$LDFLAGS"
+saved_user_CPPFLAGS="$CPPFLAGS"
DEFAULT_LIBS=""
@@ -5016,7 +5036,7 @@ if test "X$HDF_FORTRAN" = "Xyes"; then
- FCFLAGS="${FCFLAGS} ${FFLAGS}"
+ AM_FCFLAGS="${AM_FCFLAGS} ${AM_FFLAGS}"
ac_ext=${ac_fc_srcext-f}
ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5'
@@ -6927,7 +6947,7 @@ if ac_fn_cxx_try_run "$LINENO"; then :
else
echo yes
- CXXFLAGS="${CXXFLAGS} -DOLD_HEADER_FILENAME"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DOLD_HEADER_FILENAME"
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -6964,7 +6984,7 @@ if ac_fn_cxx_try_run "$LINENO"; then :
else
echo no
- CXXFLAGS="${CXXFLAGS} -DH5_NO_NAMESPACE"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DH5_NO_NAMESPACE"
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -7000,7 +7020,7 @@ if ac_fn_cxx_try_run "$LINENO"; then :
else
echo no
- CXXFLAGS="${CXXFLAGS} -DH5_NO_STD"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DH5_NO_STD"
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -7032,7 +7052,7 @@ if ac_fn_cxx_try_run "$LINENO"; then :
else
echo no
- CXXFLAGS="${CXXFLAGS} -DBOOL_NOTDEFINED"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DBOOL_NOTDEFINED"
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -7114,7 +7134,7 @@ if ac_fn_cxx_try_run "$LINENO"; then :
else
echo no
- CXXFLAGS="${CXXFLAGS} -DNO_STATIC_CAST"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DNO_STATIC_CAST"
fi
rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \
@@ -7509,7 +7529,7 @@ if test "X${HDF_FORTRAN}" = "Xyes"; then
if (${FC} -v 2>&1 | grep '^Version 8.') > /dev/null; then
H5_FORTRAN_SHARED="no"
else
- FCFLAGS="${FCFLAGS} -fPIC"
+ AM_FCFLAGS="${AM_FCFLAGS} -fPIC"
fi
fi
if (${FC} +version 2>&1 | grep '^HP F90') > /dev/null; then
@@ -8198,13 +8218,13 @@ if test "${lt_cv_nm_interface+set}" = set; then :
else
lt_cv_nm_interface="BSD nm"
echo "int some_variable = 0;" > conftest.$ac_ext
- (eval echo "\"\$as_me:8201: $ac_compile\"" >&5)
+ (eval echo "\"\$as_me:8221: $ac_compile\"" >&5)
(eval "$ac_compile" 2>conftest.err)
cat conftest.err >&5
- (eval echo "\"\$as_me:8204: $NM \\\"conftest.$ac_objext\\\"\"" >&5)
+ (eval echo "\"\$as_me:8224: $NM \\\"conftest.$ac_objext\\\"\"" >&5)
(eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out)
cat conftest.err >&5
- (eval echo "\"\$as_me:8207: output\"" >&5)
+ (eval echo "\"\$as_me:8227: output\"" >&5)
cat conftest.out >&5
if $GREP 'External.*some_variable' conftest.out > /dev/null; then
lt_cv_nm_interface="MS dumpbin"
@@ -9409,7 +9429,7 @@ ia64-*-hpux*)
;;
*-*-irix6*)
# Find out which ABI we are using.
- echo '#line 9412 "configure"' > conftest.$ac_ext
+ echo '#line 9432 "configure"' > conftest.$ac_ext
if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5
(eval $ac_compile) 2>&5
ac_status=$?
@@ -11728,11 +11748,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:11731: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:11751: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
- echo "$as_me:11735: \$? = $ac_status" >&5
+ echo "$as_me:11755: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
@@ -12067,11 +12087,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:12070: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:12090: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
- echo "$as_me:12074: \$? = $ac_status" >&5
+ echo "$as_me:12094: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
@@ -12172,11 +12192,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:12175: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:12195: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:12179: \$? = $ac_status" >&5
+ echo "$as_me:12199: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -12227,11 +12247,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:12230: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:12250: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:12234: \$? = $ac_status" >&5
+ echo "$as_me:12254: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -14658,7 +14678,7 @@ else
lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
lt_status=$lt_dlunknown
cat > conftest.$ac_ext <<_LT_EOF
-#line 14661 "configure"
+#line 14681 "configure"
#include "confdefs.h"
#if HAVE_DLFCN_H
@@ -14754,7 +14774,7 @@ else
lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
lt_status=$lt_dlunknown
cat > conftest.$ac_ext <<_LT_EOF
-#line 14757 "configure"
+#line 14777 "configure"
#include "confdefs.h"
#if HAVE_DLFCN_H
@@ -16726,11 +16746,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:16729: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:16749: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
- echo "$as_me:16733: \$? = $ac_status" >&5
+ echo "$as_me:16753: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
@@ -16825,11 +16845,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:16828: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:16848: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:16832: \$? = $ac_status" >&5
+ echo "$as_me:16852: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -16877,11 +16897,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:16880: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:16900: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:16884: \$? = $ac_status" >&5
+ echo "$as_me:16904: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -18394,11 +18414,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:18397: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:18417: $lt_compile\"" >&5)
(eval "$lt_compile" 2>conftest.err)
ac_status=$?
cat conftest.err >&5
- echo "$as_me:18401: \$? = $ac_status" >&5
+ echo "$as_me:18421: \$? = $ac_status" >&5
if (exit $ac_status) && test -s "$ac_outfile"; then
# The compiler can only warn and ignore the option if not recognized
# So say no if there are warnings other than the usual output.
@@ -18493,11 +18513,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:18496: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:18516: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:18500: \$? = $ac_status" >&5
+ echo "$as_me:18520: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -18545,11 +18565,11 @@ else
-e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
-e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
-e 's:$: $lt_compiler_flag:'`
- (eval echo "\"\$as_me:18548: $lt_compile\"" >&5)
+ (eval echo "\"\$as_me:18568: $lt_compile\"" >&5)
(eval "$lt_compile" 2>out/conftest.err)
ac_status=$?
cat out/conftest.err >&5
- echo "$as_me:18552: \$? = $ac_status" >&5
+ echo "$as_me:18572: \$? = $ac_status" >&5
if (exit $ac_status) && test -s out/conftest2.$ac_objext
then
# The compiler can only warn and ignore the option if not recognized
@@ -21158,18 +21178,20 @@ $as_echo_n "checking for large file support mode on Linux... " >&6; }
if test "X$LINUX_LFS" = "Xyes"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: enabled" >&5
$as_echo "enabled" >&6; }
- CPPFLAGS="-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: disabled" >&5
$as_echo "disabled" >&6; }
fi
- CPPFLAGS="-D_POSIX_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_POSIX_SOURCE $AM_CPPFLAGS"
- CPPFLAGS="-D_BSD_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_BSD_SOURCE $AM_CPPFLAGS"
;;
esac
+CPPFLAGS="$AM_CPPFLAGS $CPPFLAGS"
+
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
#include <sys/types.h>
@@ -23201,7 +23223,7 @@ if test "x$ac_cv_header_dmalloc_h" = x""yes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_DMALLOC_H 1
_ACEOF
-
+ AM_CPPFLAGS="$AM_CPPFLAGS -I$dmalloc_inc"
else
CPPFLAGS="$saved_CPPFLAGS"
fi
@@ -23269,6 +23291,10 @@ else
fi
+ if test -n "$HAVE_DMALLOC"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$dmalloc_lib"
+ fi
+
if test -z "$HAVE_DMALLOC" -a -n "$HDF5_CONFIG_ABORT"; then
as_fn_error "couldn't find dmalloc library" "$LINENO" 5
fi
@@ -23408,7 +23434,7 @@ if test "x$ac_cv_header_zlib_h" = x""yes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_ZLIB_H 1
_ACEOF
- HAVE_ZLIB_H="yes"
+ HAVE_ZLIB_H="yes"; AM_CPPFLAGS="$AM_CPPFLAGS -I$zlib_inc"
else
CPPFLAGS="$saved_CPPFLAGS"
fi
@@ -23481,6 +23507,10 @@ if test "x$ac_cv_func_compress2" = x""yes; then :
fi
+ if test -n "$HAVE_ZLIB"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$zlib_lib"
+ fi
+
if test -z "$HAVE_ZLIB" -a -n "$HDF5_CONFIG_ABORT"; then
as_fn_error "couldn't find zlib library" "$LINENO" 5
fi
@@ -23628,7 +23658,7 @@ if test "x$ac_cv_header_szlib_h" = x""yes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_SZLIB_H 1
_ACEOF
- HAVE_SZLIB_H="yes"
+ HAVE_SZLIB_H="yes"; AM_CPPFLAGS="$AM_CPPFLAGS -I$szlib_inc"
else
CPPFLAGS="$saved_CPPFLAGS"
fi
@@ -23696,6 +23726,10 @@ else
fi
+ if test -n "$HAVE_SZLIB"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$szlib_lib"
+ fi
+
if test -z "$HAVE_SZLIB" -a -n "$HDF5_CONFIG_ABORT"; then
as_fn_error "couldn't find szlib library" "$LINENO" 5
fi
@@ -23981,13 +24015,14 @@ if test "x$ac_cv_header_pthread_h" = x""yes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_PTHREAD_H 1
_ACEOF
-
+ AM_CPPFLAGS="$AM_CPPFLAGS -I$pthread_inc"
else
- CPPFLAGS="$saved_CPPFLAGS"; unset PTHREAD
+ unset PTHREAD
fi
done
+ CPPFLAGS="$saved_CPPFLAGS"
else
for ac_header in pthread.h
do :
@@ -24063,6 +24098,11 @@ else
LDFLAGS="$saved_LDFLAGS"; unset PTHREAD
fi
+
+ if test -n "$PTHREAD"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$pthread_lib"
+ fi
+
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for pthread_create in -lpthread" >&5
$as_echo_n "checking for pthread_create in -lpthread... " >&6; }
@@ -25135,7 +25175,7 @@ $as_echo_n "checking how to print long long... " >&6; }
if test "${hdf5_cv_printf_ll+set}" = set; then :
$as_echo_n "(cached) " >&6
else
- LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`"
+ LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`"
export LD_LIBRARY_PATH
for hdf5_cv_printf_ll in l ll L q unknown; do
@@ -26299,13 +26339,14 @@ if test "x$ac_cv_header_mpe_h" = x""yes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_MPE_H 1
_ACEOF
-
+ AM_CPPFLAGS="$AM_CPPFLAGS -I$mpe_inc"
else
- CPPFLAGS="$saved_CPPFLAGS"; unset MPE
+ unset MPE
fi
done
+ CPPFLAGS="$saved_CPPFLAGS"
else
for ac_header in mpe.h
do :
@@ -26436,6 +26477,11 @@ else
LDFLAGS="$saved_LDFLAGS"; unset MPE
fi
+
+ if test -n "$MPE"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$mpe_lib"
+ fi
+
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for MPE_Init_log in -lmpe" >&5
$as_echo_n "checking for MPE_Init_log in -lmpe... " >&6; }
@@ -27862,8 +27908,8 @@ LIBS="$DEFAULT_LIBS $LIBS"
DYNAMIC_DIRS=""
-if test -n "$LDFLAGS"; then
- for d in $LDFLAGS ; do
+if test -n "$AM_LDFLAGS $LDFLAGS"; then
+ for d in $AM_LDFLAGS $LDFLAGS ; do
case "$d" in
-L*)
d="`echo $d | sed -e 's/-L//g'`"
@@ -27878,9 +27924,9 @@ if test -n "$LDFLAGS"; then
done
fi
-if test -n "$CPPFLAGS"; then
+if test -n "$AM_CPPFLAGS"; then
TEMP_CPPFLAGS=""
- for d in $CPPFLAGS ; do
+ for d in $AM_CPPFLAGS ; do
case "$d" in
-I.*)
d="`echo $d | sed -e 's/-I//g'`"
@@ -27889,7 +27935,7 @@ if test -n "$CPPFLAGS"; then
esac
TEMP_CPPFLAGS="$d $TEMP_CPPFLAGS"
done
- CPPFLAGS=$TEMP_CPPFLAGS
+ AM_CPPFLAGS=$TEMP_CPPFLAGS
fi
@@ -28141,6 +28187,11 @@ fi
+CPPFLAGS="$saved_user_CPPFLAGS"
+LDFLAGS="$saved_user_LDFLAGS"
+
+
+
if test "X$HDF_CXX" = "Xyes"; then
BUILD_CXX_CONDITIONAL_TRUE=
BUILD_CXX_CONDITIONAL_FALSE='#'
diff --git a/configure.in b/configure.in
index 2f77de1..54c22ee 100644
--- a/configure.in
+++ b/configure.in
@@ -94,11 +94,31 @@ AC_SUBST([H5_CPPFLAGS])
AC_SUBST([H5_FCFLAGS])
AC_SUBST([H5_CXXFLAGS])
+dnl AM_CFLAGS (and company) are for CFLAGS that should be used on HDF5,
+dnl and WILL be exported to h5cc (or h5fc, etc) if set by configure.
+AC_SUBST([AM_CFLAGS])
+AC_SUBST([AM_FCFLAGS])
+AC_SUBST([AM_CXXFLAGS])
+AC_SUBST([AM_CPPFLAGS])
+AC_SUBST([AM_LDFLAGS])
+
dnl Make sure flags are set to something (otherwise macros may set them later).
+AM_CFLAGS="${AM_CFLAGS}"
+AM_CXXFLAGS="${AM_CXXFLAGS}"
+AM_FCFLAGS="${AM_FCFLAGS}"
+AM_CPPFLAGS="${AM_CPPFLAGS}"
+AM_LDFLAGS="${AM_LDFLAGS}"
CFLAGS="${CFLAGS}"
-CPPFLAGS="${CPPFLAGS}"
CXXFLAGS="${CXXFLAGS}"
FCFLAGS="${FCFLAGS}"
+CPPFLAGS="${CPPFLAGS}"
+LDFLAGS="${LDFLAGS}"
+
+dnl Configure will need to alter LDFLAGS and CPPFLAGS in order for
+dnl various checks to work correctly. Save the user's value here so it
+dnl can be restored once all configure checks are complete.
+saved_user_LDFLAGS="$LDFLAGS"
+saved_user_CPPFLAGS="$CPPFLAGS"
dnl Different compilers may need default libraries. They are specified in
dnl the config/* files, so we put this statement here so that it'll be
@@ -342,7 +362,7 @@ if test "X$HDF_FORTRAN" = "Xyes"; then
dnl --------------------------------------------------------------------
dnl General Fortran flags
dnl
- FCFLAGS="${FCFLAGS} ${FFLAGS}"
+ AM_FCFLAGS="${AM_FCFLAGS} ${AM_FFLAGS}"
dnl --------------------------------------------------------------------
dnl Fortran source extention
@@ -374,8 +394,8 @@ if test "X$HDF_FORTRAN" = "Xyes"; then
dnl --------------------------------------------------------------------
dnl See if the compiler will support the "-I." option
dnl
-dnl FCFLAGS_saved=$FCFLAGS
-dnl FCFLAGS="${FCFLAGS} -I."
+dnl AM_FCFLAGS_saved=$AM_FCFLAGS
+dnl AM_FCFLAGS="${AM_FCFLAGS} -I."
dnl AC_MSG_CHECKING(if compiler supports -I. option)
dnl AC_TRY_FCOMPILE([
@@ -383,7 +403,7 @@ dnl program conftest
dnl end
dnl ], AC_MSG_RESULT(yes),
dnl AC_MSG_RESULT(no)
-dnl FCFLAGS="$FCFLAGS_saved")
+dnl AM_FCFLAGS="$AM_FCFLAGS_saved")
dnl --------------------------------------------------------------------
dnl See if the fortran compiler supports the intrinsic function "SIZEOF"
@@ -471,7 +491,7 @@ int main(void) { return 0; }
echo no
], [
echo yes
- CXXFLAGS="${CXXFLAGS} -DOLD_HEADER_FILENAME"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DOLD_HEADER_FILENAME"
])
AC_MSG_CHECKING([if $CXX can handle namespaces])
@@ -489,7 +509,7 @@ int main(void) {
echo yes
], [
echo no
- CXXFLAGS="${CXXFLAGS} -DH5_NO_NAMESPACE"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DH5_NO_NAMESPACE"
])
AC_MSG_CHECKING([if $CXX supports std])
@@ -506,7 +526,7 @@ int main(void) {
echo yes
], [
echo no
- CXXFLAGS="${CXXFLAGS} -DH5_NO_STD"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DH5_NO_STD"
])
AC_MSG_CHECKING([if $CXX supports bool types])
@@ -519,7 +539,7 @@ int main(void) {
echo yes
], [
echo no
- CXXFLAGS="${CXXFLAGS} -DBOOL_NOTDEFINED"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DBOOL_NOTDEFINED"
])
AC_MSG_CHECKING([if $CXX has offsetof extension])
@@ -556,7 +576,7 @@ int main(void) {
echo yes
], [
echo no
- CXXFLAGS="${CXXFLAGS} -DNO_STATIC_CAST"
+ AM_CXXFLAGS="${AM_CXXFLAGS} -DNO_STATIC_CAST"
])
else
echo "no"
@@ -874,7 +894,7 @@ if test "X${HDF_FORTRAN}" = "Xyes"; then
H5_FORTRAN_SHARED="no"
else
dnl echo 'adding fortran compiler flag needed for building shared libraries'
- FCFLAGS="${FCFLAGS} -fPIC"
+ AM_FCFLAGS="${AM_FCFLAGS} -fPIC"
fi
fi
if (${FC} +version 2>&1 | grep '^HP F90') > /dev/null; then
@@ -1276,7 +1296,7 @@ case "$host_cpu-$host_vendor-$host_os" in
AC_MSG_CHECKING([for large file support mode on Linux])
if test "X$LINUX_LFS" = "Xyes"; then
AC_MSG_RESULT([enabled])
- CPPFLAGS="-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE $AM_CPPFLAGS"
else
AC_MSG_RESULT([disabled])
fi
@@ -1284,16 +1304,20 @@ case "$host_cpu-$host_vendor-$host_os" in
dnl Add POSIX support on Linux systems, so <features.h> defines
dnl __USE_POSIX, which is required to get the prototype for fdopen
dnl defined correctly in <stdio.h>
- CPPFLAGS="-D_POSIX_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_POSIX_SOURCE $AM_CPPFLAGS"
dnl Also add BSD support on Linux systems, so <features.h> defines
dnl __USE_BSD, which is required to get the prototype for strdup
dnl defined correctly in <string.h> and snprintf & vsnprintf defined
dnl correctly in <stdio.h>
- CPPFLAGS="-D_BSD_SOURCE $CPPFLAGS"
+ AM_CPPFLAGS="-D_BSD_SOURCE $AM_CPPFLAGS"
;;
esac
+dnl Need to add AM_CPPFLAGS into CPPFLAGS to make them visible for configure checks.
+dnl Note: CPPFLAGS will be restored by the end of configure.
+CPPFLAGS="$AM_CPPFLAGS $CPPFLAGS"
+
AC_TRY_COMPILE([#include <sys/types.h>],
[off64_t n = 0;],
[AC_CHECK_FUNCS([lseek64 fseek64 ftruncate64])],
@@ -1467,7 +1491,7 @@ case $withval in
CPPFLAGS="$CPPFLAGS -I$dmalloc_inc"
fi
- AC_CHECK_HEADERS(dmalloc.h,, CPPFLAGS="$saved_CPPFLAGS")
+ AC_CHECK_HEADERS(dmalloc.h, AM_CPPFLAGS="$AM_CPPFLAGS -I$dmalloc_inc",CPPFLAGS="$saved_CPPFLAGS")
if test -n "$dmalloc_lib"; then
LDFLAGS="$LDFLAGS -L$dmalloc_lib"
@@ -1475,6 +1499,10 @@ case $withval in
AC_CHECK_LIB(dmalloc, dmalloc_shutdown,, LDFLAGS="$saved_LDFLAGS"; unset HAVE_DMALLOC)
+ if test -n "$HAVE_DMALLOC"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$dmalloc_lib"
+ fi
+
if test -z "$HAVE_DMALLOC" -a -n "$HDF5_CONFIG_ABORT"; then
AC_MSG_ERROR(couldn't find dmalloc library)
fi
@@ -1542,7 +1570,7 @@ case $withval in
fi
AC_CHECK_HEADERS([zlib.h],
- [HAVE_ZLIB_H="yes"],
+ [HAVE_ZLIB_H="yes"; AM_CPPFLAGS="$AM_CPPFLAGS -I$zlib_inc"],
[CPPFLAGS="$saved_CPPFLAGS"])
if test -n "$zlib_lib"; then
@@ -1553,6 +1581,10 @@ case $withval in
[LDFLAGS="$saved_LDFLAGS"; unset HAVE_ZLIB])
AC_CHECK_FUNC([compress2], [HAVE_COMPRESS2="yes"])
+ if test -n "$HAVE_ZLIB"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$zlib_lib"
+ fi
+
if test -z "$HAVE_ZLIB" -a -n "$HDF5_CONFIG_ABORT"; then
AC_MSG_ERROR([couldn't find zlib library])
fi
@@ -1631,16 +1663,20 @@ case $withval in
fi
AC_CHECK_HEADERS([szlib.h],
- [HAVE_SZLIB_H="yes"],
+ [HAVE_SZLIB_H="yes"; AM_CPPFLAGS="$AM_CPPFLAGS -I$szlib_inc"],
[CPPFLAGS="$saved_CPPFLAGS"])
-
+
if test -n "$szlib_lib"; then
LDFLAGS="$LDFLAGS -L$szlib_lib"
fi
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress],,
[LDFLAGS="$saved_LDFLAGS"; unset HAVE_SZLIB])
-
+
+ if test -n "$HAVE_SZLIB"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$szlib_lib"
+ fi
+
if test -z "$HAVE_SZLIB" -a -n "$HDF5_CONFIG_ABORT"; then
AC_MSG_ERROR([couldn't find szlib library])
fi
@@ -1757,7 +1793,8 @@ case "$withval" in
if test -n "$pthread_inc"; then
saved_CPPFLAGS="$CPPFLAGS"
CPPFLAGS="$CPPFLAGS -I$pthread_inc"
- AC_CHECK_HEADERS([pthread.h],, [CPPFLAGS="$saved_CPPFLAGS"; unset PTHREAD])
+ AC_CHECK_HEADERS([pthread.h],AM_CPPFLAGS="$AM_CPPFLAGS -I$pthread_inc", [unset PTHREAD])
+ CPPFLAGS="$saved_CPPFLAGS"
else
AC_CHECK_HEADERS([pthread.h],, [unset PTHREAD])
fi
@@ -1767,6 +1804,11 @@ case "$withval" in
LDFLAGS="$LDFLAGS -L$pthread_lib"
AC_CHECK_LIB([pthread], [pthread_create],,
[LDFLAGS="$saved_LDFLAGS"; unset PTHREAD])
+
+ if test -n "$PTHREAD"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$pthread_lib"
+ fi
+
else
AC_CHECK_LIB([pthread], [pthread_create],, [unset PTHREAD])
fi
@@ -2072,7 +2114,7 @@ dnl LD_LIBRARY_PATH along with LDFLAGS or do it with the AC_TRY_RUN macro.
dnl
AC_MSG_CHECKING([how to print long long])
AC_CACHE_VAL([hdf5_cv_printf_ll],
-LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`"
+LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`"
export LD_LIBRARY_PATH
for hdf5_cv_printf_ll in l ll L q unknown; do
@@ -2613,7 +2655,8 @@ if test -n "$PARALLEL"; then
if test -n "$mpe_inc"; then
saved_CPPFLAGS="$CPPFLAGS"
CPPFLAGS="$CPPFLAGS -I$mpe_inc"
- AC_CHECK_HEADERS([mpe.h],, [CPPFLAGS="$saved_CPPFLAGS"; unset MPE])
+ AC_CHECK_HEADERS([mpe.h],AM_CPPFLAGS="$AM_CPPFLAGS -I$mpe_inc", [unset MPE])
+ CPPFLAGS="$saved_CPPFLAGS"
else
AC_CHECK_HEADERS([mpe.h],, [unset MPE])
fi
@@ -2625,6 +2668,11 @@ if test -n "$PARALLEL"; then
[LDFLAGS="$saved_LDFLAGS"; unset MPE])
AC_CHECK_LIB([lmpe], [CLOG_Init],,
[LDFLAGS="$saved_LDFLAGS"; unset MPE])
+
+ if test -n "$MPE"; then
+ AM_LDFLAGS="$AM_LDFLAGS -L$mpe_lib"
+ fi
+
else
AC_CHECK_LIB([mpe], [MPE_Init_log],, [unset MPE])
AC_CHECK_LIB([lmpe], [CLOG_Init],, [unset MPE])
@@ -3704,8 +3752,8 @@ dnl libraries.
dnl
AC_SUBST([DYNAMIC_DIRS]) DYNAMIC_DIRS=""
-if test -n "$LDFLAGS"; then
- for d in $LDFLAGS ; do
+if test -n "$AM_LDFLAGS $LDFLAGS"; then
+ for d in $AM_LDFLAGS $LDFLAGS ; do
case "$d" in
-L*)
d="`echo $d | sed -e 's/-L//g'`"
@@ -3722,9 +3770,9 @@ if test -n "$LDFLAGS"; then
done
fi
-if test -n "$CPPFLAGS"; then
+if test -n "$AM_CPPFLAGS"; then
TEMP_CPPFLAGS=""
- for d in $CPPFLAGS ; do
+ for d in $AM_CPPFLAGS ; do
case "$d" in
-I.*)
dnl If the path isn't absolute, make it so by prepending
@@ -3735,7 +3783,7 @@ if test -n "$CPPFLAGS"; then
esac
TEMP_CPPFLAGS="$d $TEMP_CPPFLAGS"
done
- CPPFLAGS=$TEMP_CPPFLAGS
+ AM_CPPFLAGS=$TEMP_CPPFLAGS
fi
dnl ----------------------------------------------------------------------
@@ -3938,6 +3986,13 @@ AC_RUN_IFELSE([
AC_MSG_RESULT([unknown, assuming yes])
])
+
+dnl ------------------------------------
+dnl Restore user's CPPFLAGS and LDFLAGS.
+CPPFLAGS="$saved_user_CPPFLAGS"
+LDFLAGS="$saved_user_LDFLAGS"
+
+
dnl ----------------------------------------------------------------------
dnl Create automake conditionals to tell automake makefiles which directories
dnl need to be compiled
diff --git a/examples/Makefile.in b/examples/Makefile.in
index 0f72ed9..9a6dcec 100644
--- a/examples/Makefile.in
+++ b/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/fortran/Makefile.in b/fortran/Makefile.in
index 3cbf4ab..65d8c2f 100644
--- a/fortran/Makefile.in
+++ b/fortran/Makefile.in
@@ -114,6 +114,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -127,21 +137,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -164,7 +171,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in
index ed51143..684fd92 100644
--- a/fortran/examples/Makefile.in
+++ b/fortran/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/fortran/src/Makefile.am b/fortran/src/Makefile.am
index 3a9c3f2..d2644a1 100644
--- a/fortran/src/Makefile.am
+++ b/fortran/src/Makefile.am
@@ -24,7 +24,7 @@ include $(top_srcdir)/config/lt_vers.am
# Include src directory in both Fortran and C flags (C compiler is used
# for linking).
INCLUDES=-I$(top_srcdir)/src
-AM_FCFLAGS=-I$(top_srcdir)/src -I$(top_srcdir)/fortran/src
+AM_FCFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/fortran/src
AM_FCLIBS=$(LIBHDF5)
@@ -32,14 +32,14 @@ AM_FCLIBS=$(LIBHDF5)
lib_LTLIBRARIES=libhdf5_fortran.la
# Add libtool numbers to the HDF5 Fortran library (from config/lt_vers.am)
-libhdf5_fortran_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_fortran_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Some Fortran compilers can't build shared libraries, so sometimes we
# want to build a shared C library and a static Fortran library. If so,
# pass the -static flag to the library linker.
if FORTRAN_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# Include HDF5.f90 if parallel is disabled, HDF5mpiof* if parallel is enabled
diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in
index 0ddcefd..1b1132e 100644
--- a/fortran/src/Makefile.in
+++ b/fortran/src/Makefile.in
@@ -56,6 +56,11 @@ DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(srcdir)/h5fc.in $(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am \
$(top_srcdir)/config/lt_vers.am
+
+# Some Fortran compilers can't build shared libraries, so sometimes we
+# want to build a shared C library and a static Fortran library. If so,
+# pass the -static flag to the library linker.
+@FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
noinst_PROGRAMS = H5match_types$(EXEEXT) H5fortran_detect$(EXEEXT) \
H5test_kind$(EXEEXT)
TESTS =
@@ -160,6 +165,17 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_srcdir)/src \
+ -I$(top_srcdir)/fortran/src
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -173,21 +189,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -210,7 +223,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -417,19 +430,13 @@ LT_VERS_AGE = 0
# Include src directory in both Fortran and C flags (C compiler is used
# for linking).
INCLUDES = -I$(top_srcdir)/src
-AM_FCFLAGS = -I$(top_srcdir)/src -I$(top_srcdir)/fortran/src
AM_FCLIBS = $(LIBHDF5)
# This is our main target, the fortran library
lib_LTLIBRARIES = libhdf5_fortran.la
# Add libtool numbers to the HDF5 Fortran library (from config/lt_vers.am)
-libhdf5_fortran_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
-
-# Some Fortran compilers can't build shared libraries, so sometimes we
-# want to build a shared C library and a static Fortran library. If so,
-# pass the -static flag to the library linker.
-@FORTRAN_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
+libhdf5_fortran_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
@BUILD_PARALLEL_CONDITIONAL_FALSE@PARALLEL_COND_SRC = HDF5.f90
# Include HDF5.f90 if parallel is disabled, HDF5mpiof* if parallel is enabled
diff --git a/fortran/src/h5fc.in b/fortran/src/h5fc.in
index 8c3e62b..5b915d5 100755
--- a/fortran/src/h5fc.in
+++ b/fortran/src/h5fc.in
@@ -54,10 +54,10 @@ get_output_file="no"
SHOW="eval"
FCBASE="@FC@"
FLINKERBASE="@FC@"
-FFLAGS="@FCFLAGS@"
+FFLAGS="@AM_FCFLAGS@ @FCFLAGS@"
F9XMODFLAG="@F9XMODFLAG@"
F9XSUFFIXFLAG="@F9XSUFFIXFLAG@"
-LDFLAGS="@LDFLAGS@"
+LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
LIBS="@LIBS@"
FC="${HDF5_FC:-$FCBASE}"
diff --git a/fortran/test/Makefile.am b/fortran/test/Makefile.am
index ca0a1b4..fb4d6ca 100644
--- a/fortran/test/Makefile.am
+++ b/fortran/test/Makefile.am
@@ -21,7 +21,7 @@
include $(top_srcdir)/config/commence.am
# Include files
-AM_FCFLAGS=-I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_FCFLAGS+=-I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
INCLUDES=-I$(top_srcdir)/src -I$(top_builddir)/fortran/src
# The Fortran test library
@@ -32,7 +32,7 @@ noinst_LTLIBRARIES=libh5test_fortran.la
# pass the -static flag to the library linker.
if FORTRAN_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# Our main targets, the tests themselves
diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in
index d503383..7d5009a 100644
--- a/fortran/test/Makefile.in
+++ b/fortran/test/Makefile.in
@@ -54,6 +54,11 @@ host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
+
+# Some Fortran compilers can't build shared libraries, so sometimes we
+# want to build a shared C library and a static Fortran library. If so,
+# pass the -static flag to the library linker.
+@FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
check_PROGRAMS = $(am__EXEEXT_1)
TESTS = $(check_PROGRAMS)
subdir = fortran/test
@@ -139,6 +144,19 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+
+# Include files
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_builddir)/fortran/src \
+ $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -152,21 +170,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -189,7 +204,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -388,19 +403,11 @@ TRACE = perl $(top_srcdir)/bin/trace
# Temporary files
CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5
-
-# Include files
-AM_FCFLAGS = -I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
INCLUDES = -I$(top_srcdir)/src -I$(top_builddir)/fortran/src
# The Fortran test library
noinst_LTLIBRARIES = libh5test_fortran.la
-# Some Fortran compilers can't build shared libraries, so sometimes we
-# want to build a shared C library and a static Fortran library. If so,
-# pass the -static flag to the library linker.
-@FORTRAN_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
-
# Our main targets, the tests themselves
TEST_PROG = fortranlib_test fflush1 fflush2 fortranlib_test_1_8
libh5test_fortran_la_SOURCES = tf.f90 t.c
diff --git a/fortran/testpar/Makefile.am b/fortran/testpar/Makefile.am
index 9f9fc43..2e85f3b 100644
--- a/fortran/testpar/Makefile.am
+++ b/fortran/testpar/Makefile.am
@@ -21,7 +21,7 @@
include $(top_srcdir)/config/commence.am
# Include files
-AM_FCFLAGS=-I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_FCFLAGS+=-I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFLAG)$(top_builddir)/fortran/src
# Some Fortran compilers can't build shared libraries, so sometimes we
# want to build a shared C library and a static Fortran library. If so,
@@ -30,7 +30,7 @@ AM_FCFLAGS=-I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFLAG
# parallel code. But you're welcome to try...)
if FORTRAN_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# These are our main targets
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index d0db926..edb9a66 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -53,6 +53,13 @@ host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
+
+# Some Fortran compilers can't build shared libraries, so sometimes we
+# want to build a shared C library and a static Fortran library. If so,
+# pass the -static flag to the library linker.
+# (Actually, we historically have bad luck combining shared libraries with
+# parallel code. But you're welcome to try...)
+@FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
check_PROGRAMS = $(am__EXEEXT_1)
TESTS = $(check_PROGRAMS)
subdir = fortran/testpar
@@ -89,6 +96,20 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+
+# Include files
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_srcdir)/fortran/src \
+ -I$(top_srcdir)/fortran/test \
+ $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -102,21 +123,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -139,7 +157,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -339,16 +357,6 @@ TRACE = perl $(top_srcdir)/bin/trace
# Temporary files
CHECK_CLEANFILES = *.chkexe *.chklog *.clog parf[12].h5
-# Include files
-AM_FCFLAGS = -I$(top_srcdir)/fortran/src -I$(top_srcdir)/fortran/test $(F9XMODFLAG)$(top_builddir)/fortran/src
-
-# Some Fortran compilers can't build shared libraries, so sometimes we
-# want to build a shared C library and a static Fortran library. If so,
-# pass the -static flag to the library linker.
-# (Actually, we historically have bad luck combining shared libraries with
-# parallel code. But you're welcome to try...)
-@FORTRAN_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
-
# These are our main targets
TEST_PROG_PARA = parallel_test
diff --git a/hl/Makefile.in b/hl/Makefile.in
index 07dbefc..addfd5a 100755
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -114,6 +114,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -127,21 +137,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -164,7 +171,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index a2535cd..87a582c 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -110,6 +110,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -123,21 +133,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -160,7 +167,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 27e1585..4b11346 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/c++/src/Makefile.am b/hl/c++/src/Makefile.am
index 1ff24be..15986d6 100644
--- a/hl/c++/src/Makefile.am
+++ b/hl/c++/src/Makefile.am
@@ -28,12 +28,12 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/hl/src
lib_LTLIBRARIES=libhdf5_hl_cpp.la
# Add libtool numbers to the HDF5 HL C++ library (from config/lt_vers.am)
-libhdf5_hl_cpp_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_hl_cpp_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Shared C++ libraries aren't universally supported.
if CXX_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# Source files for the library
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 04ba436..6acd8d0 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -56,6 +56,9 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \
$(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am \
$(top_srcdir)/config/lt_vers.am
+
+# Shared C++ libraries aren't universally supported.
+@CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
TESTS =
subdir = hl/c++/src
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
@@ -119,6 +122,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -132,21 +145,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -169,7 +179,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -380,10 +390,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/hl/src
lib_LTLIBRARIES = libhdf5_hl_cpp.la
# Add libtool numbers to the HDF5 HL C++ library (from config/lt_vers.am)
-libhdf5_hl_cpp_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
-
-# Shared C++ libraries aren't universally supported.
-@CXX_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
+libhdf5_hl_cpp_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Source files for the library
# At the moment, only the H5PT Packet Table has a C++ API.
diff --git a/hl/c++/test/Makefile.am b/hl/c++/test/Makefile.am
index beebc33..6dcea1c 100644
--- a/hl/c++/test/Makefile.am
+++ b/hl/c++/test/Makefile.am
@@ -26,7 +26,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/c++/src -I$(top_srcdir)/hl/src -I$(
# Shared C++ libraries aren't universally supported.
if CXX_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# These are our main targets. They should be listed in the order to be
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index c2de2e7..6bb1a99 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -53,6 +53,9 @@ host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
+
+# Shared C++ libraries aren't universally supported.
+@CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
check_PROGRAMS = $(am__EXEEXT_1)
TESTS = $(check_PROGRAMS)
subdir = hl/c++/test
@@ -93,6 +96,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -106,21 +119,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -143,7 +153,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -344,9 +354,6 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Include directories
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/c++/src -I$(top_srcdir)/hl/src -I$(top_srcdir)/hl/c++/src -I$(top_srcdir)/test -I$(top_builddir)/hl/test -I$(top_srcdir)/hl/test
-# Shared C++ libraries aren't universally supported.
-@CXX_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
-
# These are our main targets. They should be listed in the order to be
# executed, generally most specific tests to least specific tests.
TEST_PROG = ptableTest
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 0a2ec12..0380eaf 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index 9daf03a..79e0ce5 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -114,6 +114,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -127,21 +137,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -164,7 +171,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 0e59a7d..698ffbf 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -76,6 +76,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -89,21 +99,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -126,7 +133,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/fortran/src/Makefile.am b/hl/fortran/src/Makefile.am
index fbc3908..d4fec65 100644
--- a/hl/fortran/src/Makefile.am
+++ b/hl/fortran/src/Makefile.am
@@ -24,20 +24,20 @@ include $(top_srcdir)/config/lt_vers.am
INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \
-I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src
-AM_FCFLAGS=-I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_FCFLAGS+=-I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
# Our main target, the high-level fortran library
lib_LTLIBRARIES=libhdf5hl_fortran.la
# Add libtool numbers to the HDF5 HL Fortran library (from config/lt_vers.am)
-libhdf5hl_fortran_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5hl_fortran_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Some Fortran compilers can't build shared libraries, so sometimes we
# want to build a shared C library and a static Fortran library. If so,
# pass the -static flag to the library linker.
if FORTRAN_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# Source files for the library
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index f934efa..c19057c 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -55,6 +55,11 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am \
$(top_srcdir)/config/lt_vers.am
+
+# Some Fortran compilers can't build shared libraries, so sometimes we
+# want to build a shared C library and a static Fortran library. If so,
+# pass the -static flag to the library linker.
+@FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
TESTS =
subdir = hl/fortran/src
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
@@ -125,6 +130,17 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_builddir)/fortran/src \
+ $(F9XMODFLAG)$(top_builddir)/fortran/src
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -138,21 +154,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -175,7 +188,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -381,18 +394,12 @@ LT_VERS_AGE = 0
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \
-I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src
-AM_FCFLAGS = -I$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src
# Our main target, the high-level fortran library
lib_LTLIBRARIES = libhdf5hl_fortran.la
# Add libtool numbers to the HDF5 HL Fortran library (from config/lt_vers.am)
-libhdf5hl_fortran_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
-
-# Some Fortran compilers can't build shared libraries, so sometimes we
-# want to build a shared C library and a static Fortran library. If so,
-# pass the -static flag to the library linker.
-@FORTRAN_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
+libhdf5hl_fortran_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# Source files for the library
#if BUILD_PARALLEL_CONDITIONAL
diff --git a/hl/fortran/test/Makefile.am b/hl/fortran/test/Makefile.am
index 9c94bed..7f149c8 100644
--- a/hl/fortran/test/Makefile.am
+++ b/hl/fortran/test/Makefile.am
@@ -21,15 +21,15 @@
include $(top_srcdir)/config/commence.am
-AM_CPPFLAGS=-I$(top_srcdir)/src -I$(top_builddir)/src -I$(top_srcdir)/hl/src
-AM_FCFLAGS=-I$(top_builddir)/fortran/src -I$(top_builddir)/hl/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_builddir)/src -I$(top_srcdir)/hl/src
+AM_FCFLAGS+=-I$(top_builddir)/fortran/src -I$(top_builddir)/hl/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
# Some Fortran compilers can't build shared libraries, so sometimes we
# need to make sure the Fortran programs link against the static version
# of the HDF5 library. We do this by passing the -static flag to the linker.
if FORTRAN_SHARED_CONDITIONAL
else
- AM_LDFLAGS=-static
+ AM_LDFLAGS+=-static
endif
# Our main target, the test programs
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 8d9a94e..f395240 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -53,6 +53,11 @@ host_triplet = @host@
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
$(top_srcdir)/config/commence.am \
$(top_srcdir)/config/conclude.am
+
+# Some Fortran compilers can't build shared libraries, so sometimes we
+# need to make sure the Fortran programs link against the static version
+# of the HDF5 library. We do this by passing the -static flag to the linker.
+@FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static
check_PROGRAMS = $(am__EXEEXT_1)
TESTS = $(check_PROGRAMS)
subdir = hl/fortran/test
@@ -96,6 +101,20 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I$(top_srcdir)/src \
+ -I$(top_builddir)/src -I$(top_srcdir)/hl/src
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ -I$(top_builddir)/fortran/src \
+ -I$(top_builddir)/hl/fortran/src \
+ $(F9XMODFLAG)$(top_builddir)/fortran/src \
+ $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
+AM_LDFLAGS = @AM_LDFLAGS@ $(am__append_1)
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -109,21 +128,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -146,7 +162,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -346,13 +362,6 @@ TRACE = perl $(top_srcdir)/bin/trace
# Temporary files.
CHECK_CLEANFILES = *.chkexe *.chklog *.clog dsetf[1-4].h5 f1img.h5 \
f1tab.h5
-AM_CPPFLAGS = -I$(top_srcdir)/src -I$(top_builddir)/src -I$(top_srcdir)/hl/src
-AM_FCFLAGS = -I$(top_builddir)/fortran/src -I$(top_builddir)/hl/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
-
-# Some Fortran compilers can't build shared libraries, so sometimes we
-# need to make sure the Fortran programs link against the static version
-# of the HDF5 library. We do this by passing the -static flag to the linker.
-@FORTRAN_SHARED_CONDITIONAL_FALSE@AM_LDFLAGS = -static
# Our main target, the test programs
TEST_PROG = tstlite tstimage tsttable
diff --git a/hl/src/Makefile.am b/hl/src/Makefile.am
index 3ee186e..0eecbbb 100644
--- a/hl/src/Makefile.am
+++ b/hl/src/Makefile.am
@@ -22,13 +22,13 @@ include $(top_srcdir)/config/commence.am
include $(top_srcdir)/config/lt_vers.am
# Add include directories to the C preprocessor flags
-AM_CPPFLAGS=-I$(top_srcdir)/src
+AM_CPPFLAGS+=-I$(top_srcdir)/src
# This library is our main target.
lib_LTLIBRARIES=libhdf5_hl.la
# Add libtool numbers to the HDF5 hl library (from config/lt_vers.am)
-libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
libhdf5_hl_la_SOURCES=H5DS.c H5IM.c H5LT.c H5LTanalyze.c H5LTparse.c H5PT.c H5TB.c
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index ee3d183..4a16fe0 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -120,6 +120,18 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+
+# Add include directories to the C preprocessor flags
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I$(top_srcdir)/src
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -133,21 +145,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -170,7 +179,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -374,14 +383,11 @@ LT_VERS_INTERFACE = 6
LT_VERS_REVISION = 38
LT_VERS_AGE = 0
-# Add include directories to the C preprocessor flags
-AM_CPPFLAGS = -I$(top_srcdir)/src
-
# This library is our main target.
lib_LTLIBRARIES = libhdf5_hl.la
# Add libtool numbers to the HDF5 hl library (from config/lt_vers.am)
-libhdf5_hl_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_hl_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
libhdf5_hl_la_SOURCES = H5DS.c H5IM.c H5LT.c H5LTanalyze.c H5LTparse.c H5PT.c H5TB.c
# Public header files (to be installed)
diff --git a/hl/test/Makefile.am b/hl/test/Makefile.am
index d20b7d3..fc6e969 100644
--- a/hl/test/Makefile.am
+++ b/hl/test/Makefile.am
@@ -22,7 +22,7 @@
include $(top_srcdir)/config/commence.am
# Add include directories to C preprocessor flags
-AM_CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src -I$(top_builddir)/test -I$(top_srcdir)/test -I$(top_srcdir)/hl/src
+AM_CPPFLAGS+=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src -I$(top_builddir)/test -I$(top_srcdir)/test -I$(top_srcdir)/hl/src
# The tests depend on the hdf5, hdf5 test, and hdf5_hl libraries
LDADD=$(LIBH5_HL) $(LIBH5TEST) $(LIBHDF5)
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index 29cfb11..4a5aa5b 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -121,6 +121,21 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+
+# Add include directories to C preprocessor flags
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I. -I$(srcdir) \
+ -I$(top_builddir)/src -I$(top_srcdir)/src \
+ -I$(top_builddir)/test -I$(top_srcdir)/test \
+ -I$(top_srcdir)/hl/src
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -134,21 +149,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -171,7 +183,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -373,9 +385,6 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog combine_tables[1-2].h5 \
test_ds[1-9].h5 test_image[1-3].h5 test_lite[1-2].h5 \
test_table.h5 test_packet_table.h5 test_packet_compress.h5
-# Add include directories to C preprocessor flags
-AM_CPPFLAGS = -I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src -I$(top_builddir)/test -I$(top_srcdir)/test -I$(top_srcdir)/hl/src
-
# The tests depend on the hdf5, hdf5 test, and hdf5_hl libraries
LDADD = $(LIBH5_HL) $(LIBH5TEST) $(LIBHDF5)
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index cc38324..2738d84 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -111,6 +111,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -124,21 +134,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -161,7 +168,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/hl/tools/gif2h5/Makefile.am b/hl/tools/gif2h5/Makefile.am
index f1cec06..895c75f 100644
--- a/hl/tools/gif2h5/Makefile.am
+++ b/hl/tools/gif2h5/Makefile.am
@@ -32,8 +32,8 @@ bin_PROGRAMS=gif2h5 h52gif
noinst_PROGRAMS=h52gifgentst
# Add h52gif and gif2h5 specific linker flags here
-h52gif_LDFLAGS = $(LT_STATIC_EXEC)
-gif2h5_LDFLAGS = $(LT_STATIC_EXEC)
+h52gif_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+gif2h5_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
gif2h5_SOURCES=gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 71a16c4..e43dd07 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -111,6 +111,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -124,21 +134,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -161,7 +168,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -367,8 +374,8 @@ TEST_SCRIPT = $(srcdir)/h52giftest.sh
check_SCRIPTS = $(TEST_SCRIPT)
# Add h52gif and gif2h5 specific linker flags here
-h52gif_LDFLAGS = $(LT_STATIC_EXEC)
-gif2h5_LDFLAGS = $(LT_STATIC_EXEC)
+h52gif_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+gif2h5_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
gif2h5_SOURCES = gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c
h52gif_SOURCES = hdf2gif.c hdfgifwr.c
h52gifgentst_SOURCES = h52gifgentst.c
diff --git a/perform/Makefile.am b/perform/Makefile.am
index 255275e..6836a2b 100644
--- a/perform/Makefile.am
+++ b/perform/Makefile.am
@@ -31,8 +31,8 @@ else
endif
# Add h5perf and h5perf_serial specific linker flags here
-h5perf_LDFLAGS = $(LT_STATIC_EXEC)
-h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC)
+h5perf_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Some programs are not built or run by default, but can be built by hand or by
# specifying --enable-build-all at configure time.
diff --git a/perform/Makefile.in b/perform/Makefile.in
index 355b732..ff5fa34 100644
--- a/perform/Makefile.in
+++ b/perform/Makefile.in
@@ -147,6 +147,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -160,21 +170,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -197,7 +204,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -398,8 +405,8 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = h5perf perf
# Add h5perf and h5perf_serial specific linker flags here
-h5perf_LDFLAGS = $(LT_STATIC_EXEC)
-h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC)
+h5perf_LDFLAGS = $(LT_STATIC_EXEC) $(LD_FLAGS)
+h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(LD_FLAGS)
# Some programs are not built or run by default, but can be built by hand or by
# specifying --enable-build-all at configure time.
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index ee899ea..da91b2a 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -316,6 +316,16 @@ Bug Fixes since HDF5-1.8.0 release
Configuration
-------------
+ - Removed the following config files, as we no longer support them:
+ config/dec-osf*, config/hpux11.00, config/irix5.x,
+ config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos*
+ MAM - 2009/10/08
+ - Modified configure and make process to properly preserve user's CFLAGS
+ (and company) environment variables. Build will now properly use
+ automake's AM_CFLAGS for any compiler flags set by the configure
+ process. Configure will no longer modify CFLAGS directly, nor will
+ setting CFLAGS during make completely replace what configure has set up.
+ MAM - 2009/10/08
- Support for TFLOPS, config/intel-osf1, is removed since the TFLOPS
machine has long retired. AKC - 2009/10/06.
- Added $(EXEEXT) extension to H5detect when it's executed in the
diff --git a/src/Makefile.am b/src/Makefile.am
index a9f82d7..fa9306f 100755
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -27,13 +27,13 @@ include $(top_srcdir)/config/lt_vers.am
# a long time to compile it with any optimization on. H5detect is used
# to generate H5Tinit.c once. So, optimization is not critical.
noinst_PROGRAMS = H5detect
-H5detect_CFLAGS = -g
+H5detect_CFLAGS = -g $(AM_CFLAGS)
# Our main target, the HDF5 library
lib_LTLIBRARIES=libhdf5.la
# Add libtool numbers to the HDF5 library (from config/lt_vers.am)
-libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# H5Tinit.c is a generated file, and should be cleaned.
MOSTLYCLEANFILES=H5Tinit.c
diff --git a/src/Makefile.in b/src/Makefile.in
index 35d92b6..713986c 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -181,6 +181,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -194,21 +204,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -231,7 +238,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -434,13 +441,13 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
LT_VERS_INTERFACE = 6
LT_VERS_REVISION = 38
LT_VERS_AGE = 0
-H5detect_CFLAGS = -g
+H5detect_CFLAGS = -g $(AM_CFLAGS)
# Our main target, the HDF5 library
lib_LTLIBRARIES = libhdf5.la
# Add libtool numbers to the HDF5 library (from config/lt_vers.am)
-libhdf5_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+libhdf5_la_LDFLAGS = -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# H5Tinit.c is a generated file, and should be cleaned.
MOSTLYCLEANFILES = H5Tinit.c
diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in
index 51406de..e194c0a 100644
--- a/src/libhdf5.settings.in
+++ b/src/libhdf5.settings.in
@@ -17,15 +17,20 @@ Compiling Options:
------------------
Compilation Mode: @CONFIG_MODE@
C Compiler: @CC_VERSION@
- CFLAGS/H5_CFLAGS: @CFLAGS@/@H5_CFLAGS@
- CPPFLAGS/H5_CPPFLAGS: @CPPFLAGS@/@H5_CPPFLAGS@
+ CFLAGS: @CFLAGS@
+ H5_CFLAGS: @H5_CFLAGS@
+ CPPFLAGS: @CPPFLAGS@
+ H5_CPPFLAGS: @H5_CPPFLAGS@
+ AM_CPPFLAGS: @AM_CPPFLAGS@
Shared Libraries: @enable_shared@
Static Libraries: @enable_static@
Statically Linked Executables: @STATIC_EXEC@
- Extra libraries: @LDFLAGS@ @LIBS@
- Archiver: @AR@
- Ranlib: @RANLIB@
- Debugged Packages: @DEBUG_PKG@
+ LDFLAGS: @LDFLAGS@
+ AM_LDFLAGS: @AM_LDFLAGS@
+ Extra libraries: @LIBS@
+ Archiver: @AR@
+ Ranlib: @RANLIB@
+ Debugged Packages: @DEBUG_PKG@
API Tracing: @TRACE_API@
Languages:
@@ -33,9 +38,13 @@ Languages:
Fortran: @HDF_FORTRAN@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Fortran Compiler: @FC@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Fortran Flags: @FCFLAGS@
+@BUILD_FORTRAN_CONDITIONAL_TRUE@ H5 Fortran Flags: @H5_FCFLAGS@
+@BUILD_FORTRAN_CONDITIONAL_TRUE@ AM Fortran Flags: @AM_FCFLAGS@
C++: @HDF_CXX@
@BUILD_CXX_CONDITIONAL_TRUE@ C++ Compiler: @CXX@
@BUILD_CXX_CONDITIONAL_TRUE@ C++ Flags: @CXXFLAGS@
+@BUILD_CXX_CONDITIONAL_TRUE@ H5 C++ Flags: @H5_CXXFLAGS@
+@BUILD_CXX_CONDITIONAL_TRUE@ AM C++ Flags: @AM_CXXFLAGS@
Features:
---------
diff --git a/test/Makefile.in b/test/Makefile.in
index b52c920..e1ed182 100644
--- a/test/Makefile.in
+++ b/test/Makefile.in
@@ -399,6 +399,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -412,21 +422,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -449,7 +456,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/testpar/Makefile.in b/testpar/Makefile.in
index fb13cfd..c06e6d4 100644
--- a/testpar/Makefile.in
+++ b/testpar/Makefile.in
@@ -120,6 +120,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -133,21 +143,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -170,7 +177,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 3675e3a..e482ea2 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -111,6 +111,16 @@ am__relativize = \
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -124,21 +134,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -161,7 +168,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am
index 1848972..dd0c5c3 100644
--- a/tools/h5copy/Makefile.am
+++ b/tools/h5copy/Makefile.am
@@ -34,7 +34,7 @@ bin_PROGRAMS=h5copy
check_PROGRAMS=$(TEST_PROG)
# Add h5copy specific linker flags here
-h5copy_LDFLAGS = $(LT_STATIC_EXEC)
+h5copy_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# source file for the test file generator
h5copygentest_SOURCES=h5copygentest.c
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
index b582057..d2a8e0d 100644
--- a/tools/h5copy/Makefile.in
+++ b/tools/h5copy/Makefile.in
@@ -103,6 +103,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -116,21 +126,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -153,7 +160,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -364,7 +371,7 @@ check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5copy$(EXEEXT)
# Add h5copy specific linker flags here
-h5copy_LDFLAGS = $(LT_STATIC_EXEC)
+h5copy_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# source file for the test file generator
h5copygentest_SOURCES = h5copygentest.c
diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am
index b56284b..0b8816f 100644
--- a/tools/h5diff/Makefile.am
+++ b/tools/h5diff/Makefile.am
@@ -34,7 +34,7 @@ endif
bin_PROGRAMS=h5diff $(H5PDIFF)
# Add h5diff specific linker flags here
-h5diff_LDFLAGS = $(LT_STATIC_EXEC)
+h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Test programs and scripts
TEST_PROG=h5diffgentest
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index 91add70..04a64da 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -110,6 +110,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -123,21 +133,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -160,7 +167,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -371,7 +378,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh
# Add h5diff specific linker flags here
-h5diff_LDFLAGS = $(LT_STATIC_EXEC)
+h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Test programs and scripts
TEST_PROG = h5diffgentest
diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am
index 992586b..81e38d1 100644
--- a/tools/h5dump/Makefile.am
+++ b/tools/h5dump/Makefile.am
@@ -35,7 +35,7 @@ SCRIPT_DEPEND=h5dump$(EXEEXT)
bin_PROGRAMS=h5dump
# Add h5dump specific linker flags here
-h5dump_LDFLAGS = $(LT_STATIC_EXEC)
+h5dump_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All the programs depend on the hdf5 and h5tools libraries
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index be8cf96..8ca6684 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -108,6 +108,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -121,21 +131,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -158,7 +165,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -369,7 +376,7 @@ check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5dump$(EXEEXT)
# Add h5dump specific linker flags here
-h5dump_LDFLAGS = $(LT_STATIC_EXEC)
+h5dump_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All the programs depend on the hdf5 and h5tools libraries
LDADD = $(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5import/Makefile.am b/tools/h5import/Makefile.am
index 2202f5f..49f4f71 100644
--- a/tools/h5import/Makefile.am
+++ b/tools/h5import/Makefile.am
@@ -35,7 +35,7 @@ SCRIPT_DEPEND=h5import$(EXEEXT)
bin_PROGRAMS=h5import
# Add h5import specific linker flags here
-h5import_LDFLAGS = $(LT_STATIC_EXEC)
+h5import_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All programs depend on the main hdf5 library and the tools library
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in
index f9e88ae..15fcf90 100755
--- a/tools/h5import/Makefile.in
+++ b/tools/h5import/Makefile.in
@@ -103,6 +103,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -116,21 +126,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -153,7 +160,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -361,7 +368,7 @@ check_SCRIPT = h5importtestutil.sh
SCRIPT_DEPEND = h5import$(EXEEXT)
# Add h5import specific linker flags here
-h5import_LDFLAGS = $(LT_STATIC_EXEC)
+h5import_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All programs depend on the main hdf5 library and the tools library
LDADD = $(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5jam/Makefile.am b/tools/h5jam/Makefile.am
index d89a2d2..2f9bc00 100644
--- a/tools/h5jam/Makefile.am
+++ b/tools/h5jam/Makefile.am
@@ -28,8 +28,8 @@ check_PROGRAMS=tellub h5jamgentest getub
TEST_SCRIPT=testh5jam.sh
# Add h5jam and h5unjam specific linker flags here
-h5jam_LDFLAGS = $(LT_STATIC_EXEC)
-h5unjam_LDFLAGS = $(LT_STATIC_EXEC)
+h5jam_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5unjam_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
check_SCRIPTS=$(TEST_SCRIPT)
SCRIPT_DEPEND=h5jam$(EXEEXT) h5unjam$(EXEEXT)
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index 12486a0..5509801 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -117,6 +117,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -130,21 +140,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -167,7 +174,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -373,8 +380,8 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
TEST_SCRIPT = testh5jam.sh
# Add h5jam and h5unjam specific linker flags here
-h5jam_LDFLAGS = $(LT_STATIC_EXEC)
-h5unjam_LDFLAGS = $(LT_STATIC_EXEC)
+h5jam_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5unjam_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5jam$(EXEEXT) h5unjam$(EXEEXT)
diff --git a/tools/h5ls/Makefile.am b/tools/h5ls/Makefile.am
index 64e89f1..41e66f6 100644
--- a/tools/h5ls/Makefile.am
+++ b/tools/h5ls/Makefile.am
@@ -32,7 +32,7 @@ SCRIPT_DEPEND=h5ls$(EXEEXT)
bin_PROGRAMS=h5ls
# Add h5ls specific linker flags here
-h5ls_LDFLAGS = $(LT_STATIC_EXEC)
+h5ls_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All programs depend on the hdf5 and h5tools libraries
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index bace577..c11dc43 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -97,6 +97,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -110,21 +120,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -147,7 +154,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -354,7 +361,7 @@ check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5ls$(EXEEXT)
# Add h5ls specific linker flags here
-h5ls_LDFLAGS = $(LT_STATIC_EXEC)
+h5ls_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# All programs depend on the hdf5 and h5tools libraries
LDADD = $(LIBH5TOOLS) $(LIBHDF5)
diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am
index 1f811f0..96f0082 100644
--- a/tools/h5repack/Makefile.am
+++ b/tools/h5repack/Makefile.am
@@ -37,7 +37,7 @@ SCRIPT_DEPEND=h5repack$(EXEEXT)
bin_PROGRAMS=h5repack
# Add h5repack specific linker flags here
-h5repack_LDFLAGS = $(LT_STATIC_EXEC)
+h5repack_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Depend on the hdf5 library, the tools library, the test library
LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index 656cfa6..dd33879 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -117,6 +117,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -130,21 +140,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -167,7 +174,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -378,7 +385,7 @@ check_SCRIPTS = $(TEST_SCRIPT)
SCRIPT_DEPEND = h5repack$(EXEEXT)
# Add h5repack specific linker flags here
-h5repack_LDFLAGS = $(LT_STATIC_EXEC)
+h5repack_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Depend on the hdf5 library, the tools library, the test library
LDADD = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
diff --git a/tools/h5stat/Makefile.am b/tools/h5stat/Makefile.am
index a14172d..13d9baf 100644
--- a/tools/h5stat/Makefile.am
+++ b/tools/h5stat/Makefile.am
@@ -36,7 +36,7 @@ bin_PROGRAMS=h5stat
bin_SCRIPTS=
# Add h5stat specific linker flags here
-h5stat_LDFLAGS = $(LT_STATIC_EXEC)
+h5stat_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Tell automake to clean h5redeploy script
CLEANFILES=
diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in
index 15b19ed..08de49b 100644
--- a/tools/h5stat/Makefile.in
+++ b/tools/h5stat/Makefile.in
@@ -126,6 +126,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -139,21 +149,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -176,7 +183,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -390,7 +397,7 @@ SCRIPT_DEPEND = h5stat$(EXEEXT)
bin_SCRIPTS =
# Add h5stat specific linker flags here
-h5stat_LDFLAGS = $(LT_STATIC_EXEC)
+h5stat_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Tell automake to clean h5redeploy script
CLEANFILES =
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
index 55785c7..2b269ca 100644
--- a/tools/lib/Makefile.in
+++ b/tools/lib/Makefile.in
@@ -96,6 +96,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -109,21 +119,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -146,7 +153,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am
index fe1acbd..11c86fa 100644
--- a/tools/misc/Makefile.am
+++ b/tools/misc/Makefile.am
@@ -36,9 +36,9 @@ bin_PROGRAMS=h5debug h5repart h5mkgrp
bin_SCRIPTS=h5redeploy
# Add h5debug, h5repart, and h5mkgrp specific linker flags here
-h5debug_LDFLAGS = $(LT_STATIC_EXEC)
-h5repart_LDFLAGS = $(LT_STATIC_EXEC)
-h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC)
+h5debug_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5repart_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Tell automake to clean h5redeploy script
CLEANFILES=h5redeploy
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 78a42b8..a3d3e23 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -151,6 +151,16 @@ DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
AMTAR = @AMTAR@
+
+# H5_CFLAGS holds flags that should be used when building hdf5,
+# but which should not be exported to h5cc for building other programs.
+# AM_CFLAGS is an automake construct which should be used by Makefiles
+# instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
+AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
+AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@
AM_MAKEFLAGS = @AM_MAKEFLAGS@
AR = @AR@
@@ -164,21 +174,18 @@ BYTESEX = @BYTESEX@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CC_VERSION = @CC_VERSION@
-
-# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
-# but which shouldn't be exported to h5cc for building other programs.
-CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CFLAGS = @CFLAGS@
CLEARFILEBUF = @CLEARFILEBUF@
CODESTACK = @CODESTACK@
CONFIG_DATE = @CONFIG_DATE@
CONFIG_MODE = @CONFIG_MODE@
CONFIG_USER = @CONFIG_USER@
CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEBUG_PKG = @DEBUG_PKG@
DEFAULT_API_VERSION = @DEFAULT_API_VERSION@
@@ -201,7 +208,7 @@ F9XMODEXT = @F9XMODEXT@
F9XMODFLAG = @F9XMODFLAG@
F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
FC = @FC@
-FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCFLAGS = @FCFLAGS@
FCFLAGS_f90 = @FCFLAGS_f90@
FCLIBS = @FCLIBS@
FGREP = @FGREP@
@@ -415,9 +422,9 @@ SCRIPT_DEPEND = h5repart$(EXEEXT) h5mkgrp$(EXEEXT)
bin_SCRIPTS = h5redeploy
# Add h5debug, h5repart, and h5mkgrp specific linker flags here
-h5debug_LDFLAGS = $(LT_STATIC_EXEC)
-h5repart_LDFLAGS = $(LT_STATIC_EXEC)
-h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC)
+h5debug_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5repart_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Tell automake to clean h5redeploy script
CLEANFILES = h5redeploy
diff --git a/tools/misc/h5cc.in b/tools/misc/h5cc.in
index 1ead951..3422bdd 100755
--- a/tools/misc/h5cc.in
+++ b/tools/misc/h5cc.in
@@ -58,9 +58,9 @@ get_output_file="no"
SHOW="eval"
CCBASE="@CC@"
CLINKERBASE="@CC@"
-CFLAGS="@CFLAGS@"
-CPPFLAGS="@CPPFLAGS@"
-LDFLAGS="@LDFLAGS@"
+CFLAGS="@AM_CFLAGS@ @CFLAGS@"
+CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@"
+LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
LIBS="@LIBS@"
CC="${HDF5_CC:-$CCBASE}"