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author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2022-10-03 18:31:32 (GMT) |
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committer | GitHub <noreply@github.com> | 2022-10-03 18:31:32 (GMT) |
commit | c114bd64b0662a010b0a9c502b921adfab00f1e6 (patch) | |
tree | 9bfe24cf7fa1618398e2a7e053483ff0c8043e51 | |
parent | 1fb83da21531da8e531234fa6ab810b7a90d7ee9 (diff) | |
download | hdf5-c114bd64b0662a010b0a9c502b921adfab00f1e6.zip hdf5-c114bd64b0662a010b0a9c502b921adfab00f1e6.tar.gz hdf5-c114bd64b0662a010b0a9c502b921adfab00f1e6.tar.bz2 |
Fix mostly java warnings, and cpp cast (#2134)
-rw-r--r-- | c++/test/tfilter.cpp | 8 | ||||
-rw-r--r-- | java/src/jni/h5aImp.c | 30 | ||||
-rw-r--r-- | java/src/jni/h5dImp.c | 28 | ||||
-rw-r--r-- | java/src/jni/h5jni.h | 17 | ||||
-rw-r--r-- | java/src/jni/h5util.c | 296 | ||||
-rw-r--r-- | java/test/TestH5Fparams.java | 1 | ||||
-rw-r--r-- | java/test/TestH5Ocreate.java | 4 | ||||
-rw-r--r-- | java/test/TestH5Oparams.java | 3 | ||||
-rw-r--r-- | test/tmisc.c | 2 |
9 files changed, 204 insertions, 185 deletions
diff --git a/c++/test/tfilter.cpp b/c++/test/tfilter.cpp index b5073e8..e47a44d 100644 --- a/c++/test/tfilter.cpp +++ b/c++/test/tfilter.cpp @@ -190,13 +190,15 @@ test_szip_filter(H5File &file1) hsize_t i, j, n; for (i = n = 0; i < size[0]; i++) { for (j = 0; j < size[1]; j++) { - points[i][j] = (int)n++; + points[i][j] = static_cast<int> n++; } } // Write to the dataset then read back the values - dataset.write((void *)points, PredType::NATIVE_INT, DataSpace::ALL, DataSpace::ALL, xfer); - dataset.read((void *)check, PredType::NATIVE_INT, DataSpace::ALL, DataSpace::ALL, xfer); + dataset.write(static_cast<void *> points, PredType::NATIVE_INT, DataSpace::ALL, DataSpace::ALL, + xfer); + dataset.read(static_cast<void *> check, PredType::NATIVE_INT, DataSpace::ALL, DataSpace::ALL, + xfer); // Check that the values read are the same as the values written for (i = 0; i < size[0]; i++) diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index e5e8462..086fea8 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -1084,7 +1084,7 @@ Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem /* Get size of data array */ if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: readBuf length < 0"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL: readBuf length < 0"); } dims[0] = (hsize_t)n; @@ -1095,12 +1095,12 @@ Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (type_class == H5T_VLEN) { - size_t typeSize; - hid_t memb = H5I_INVALID_HID; - H5T_class_t vlClass; - size_t vlSize; - void *rawBuf = NULL; - jobject *jList = NULL; + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void *rawBuf = NULL; + jobjectArray jList = NULL; size_t i, j, x; @@ -1234,7 +1234,7 @@ Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem } jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid, - floatValue); + (double)floatValue); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } @@ -1321,7 +1321,7 @@ Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong me htri_t vl_data_class; herr_t status = FAIL; jboolean writeBufIsCopy; - jbyteArray *writeBuf = NULL; + jbyteArray writeBuf = NULL; UNUSED(clss); @@ -1344,12 +1344,12 @@ Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong me if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (type_class == H5T_VLEN) { - size_t typeSize; - hid_t memb = H5I_INVALID_HID; - H5T_class_t vlClass; - size_t vlSize; - void *rawBuf = NULL; - jobject *jList = NULL; + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void *rawBuf = NULL; + jobjectArray jList = NULL; size_t i, j, x; diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index e6e9a76..59775e3 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -1110,12 +1110,12 @@ Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (type_class == H5T_VLEN) { - size_t typeSize; - hid_t memb = H5I_INVALID_HID; - H5T_class_t vlClass; - size_t vlSize; - void *rawBuf = NULL; - jobject *jList = NULL; + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void *rawBuf = NULL; + jobjectArray jList = NULL; size_t i, j, x; @@ -1250,7 +1250,7 @@ Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong } jobj = ENVPTR->CallStaticObjectMethod(ENVONLY, cFloat, floatValueMid, - floatValue); + (double)floatValue); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); break; } @@ -1334,7 +1334,7 @@ Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong htri_t vl_data_class; herr_t status = FAIL; jboolean writeBufIsCopy; - jbyteArray *writeBuf = NULL; + jbyteArray writeBuf = NULL; UNUSED(clss); @@ -1353,12 +1353,12 @@ Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong if ((type_class = H5Tget_class((hid_t)mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (type_class == H5T_VLEN) { - size_t typeSize; - hid_t memb = H5I_INVALID_HID; - H5T_class_t vlClass; - size_t vlSize; - void *rawBuf = NULL; - jobject *jList = NULL; + size_t typeSize; + hid_t memb = H5I_INVALID_HID; + H5T_class_t vlClass; + size_t vlSize; + void *rawBuf = NULL; + jobjectArray jList = NULL; size_t i, j, x; diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index 2c93846..5af5a91 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -257,6 +257,23 @@ do { \ (*envptr)->ReleaseStringUTFChars(envptr, pinnedString, stringToRelease); \ } while (0) +/* + * Above String macros may be incorrect, suggested code for getting a cstr from java + * int jstr_to_cstr(JNIEnv *jenv, jstring j_str, char *c_str, size_t cstr_len) + * { + * int32_t j_len, c_len; + * + * c_len = (*jenv)->GetStringUTFLength(jenv, j_str); + * if (c_len > (int32_t)cstr_len) + * return -ENAMETOOLONG; + * j_len = (*jenv)->GetStringLength(jenv, j_str); + * (*jenv)->GetStringUTFRegion(jenv, j_str, 0, j_len, c_str); + * if ((*jenv)->ExceptionCheck(jenv)) + * return -EIO; + * return 0; + * } + * + */ #ifdef __cplusplus extern "C" { diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index e8417b6..37d0194 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -436,7 +436,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ break; case H5T_ENUM: { - void *value; + void *value = NULL; token = HDstrtok(this_str, delimiter); @@ -865,7 +865,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (NULL == (this_str = (char *)HDmalloc(this_len))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsnprintf(this_str, this_len, "%g", tmp_float) < 0) + if (HDsnprintf(this_str, this_len, "%g", (double)tmp_float) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); break; @@ -2273,10 +2273,10 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs } case H5T_STRING: { - unsigned char tempuchar; unsigned int i; H5T_str_t pad; - char *s; + char *s = NULL; + unsigned char tempuchar; if ((pad = H5Tget_strpad(tid)) < 0) { ret_value = FAIL; @@ -2287,7 +2287,7 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs mem = ((unsigned char *)_mem) + block_index * size; if (H5Tis_variable_str(tid)) { - s = *(char **)mem; + s = *(char **)((void *)mem); if (s != NULL) size = HDstrlen(s); } @@ -2919,24 +2919,20 @@ done: int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) { + hid_t f_space = H5I_INVALID_HID; /* file data space */ hsize_t elmtno; /* counter */ + size_t i = 0; /* counter */ + int sndims; /* rank of dataspace */ + int carry; /* counter carry value */ hsize_t zero[8]; /* vector of zeros */ hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ - size_t i; /* counter */ - hid_t f_space = H5I_INVALID_HID; /* file data space */ - int ndims; - int carry; /* counter carry value */ - - /* Print info */ - hssize_t p_nelmts; /* total selected elmts */ - size_t p_type_nbytes; /* size of memory type */ /* Stripmine info */ - void *sm_buf = NULL; /* buffer for raw data */ - hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ - hsize_t sm_nbytes; /* bytes per stripmine */ - hsize_t sm_nelmts; /* elements per stripmine */ - hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + hsize_t sm_nbytes; /* bytes per stripmine */ + hsize_t sm_nelmts; /* elements per stripmine */ + unsigned char *sm_buf = NULL; /* buffer for raw data */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ /* Hyperslab info */ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ @@ -2944,11 +2940,11 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) hsize_t hs_nelmts; /* elements in request */ /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - hid_t p_type = H5I_INVALID_HID; - hid_t f_type = H5I_INVALID_HID; + unsigned int vl_data = 0; /* contains VL datatypes */ + int ret_value = FAIL; - int ret_value = FAIL; + hid_t p_type = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; if (dset < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_dump_simple_dset: dset ID < 0"); @@ -2959,18 +2955,21 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) if ((f_space = H5Dget_space(dset)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + if ((sndims = H5Sget_simple_extent_ndims(f_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); + /* Assume entire data space to be printed */ if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + hssize_t p_nelmts; /* total selected elmts */ + if ((p_nelmts = H5Sget_simple_extent_npoints(f_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == - (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + (sm_buf = (unsigned char *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); /* Read the data */ @@ -2987,6 +2986,10 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) } } else { + /* Print info */ + size_t p_type_nbytes; /* size of memory type */ + hsize_t p_nelmts; /* total selected elmts */ + switch (binary_order) { case 1: { if ((p_type = h5str_get_native_type(f_type)) < 0) @@ -3017,109 +3020,102 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) } } - if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { - if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; - /* Calculate the number of elements we're going to print */ - p_nelmts = 1; - - if (ndims > 0) { - for (i = 0; i < (size_t)ndims; i++) - p_nelmts *= total_size[i]; - } /* end if */ + if (sndims > 0) { + for (i = 0; i < (size_t)sndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ - if (p_nelmts > 0) { - /* Check if we have VL data in the dataset's datatype */ - if (h5str_detect_vlen(p_type) != 0) - vl_data = 1; + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; - /* - * Determine the strip mine size and allocate a buffer. The strip mine is - * a hyperslab whose size is manageable. - */ - if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) - H5_LIBRARY_ERROR(ENVONLY); + /* + * Determine the strip mine size and allocate a buffer. The strip mine is + * a hyperslab whose size is manageable. + */ + if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) + H5_LIBRARY_ERROR(ENVONLY); - if (ndims > 0) { - for (i = (size_t)ndims; i > 0; --i) { - hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; - if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ - size = 1; - sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); - sm_nbytes *= sm_size[i - 1]; - } + if (sndims > 0) { + for (i = (size_t)sndims; i > 0; --i) { + hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; + if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ + size = 1; + sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); + sm_nbytes *= sm_size[i - 1]; } + } - if (sm_nbytes > 0) { - if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); + if (sm_nbytes > 0) { + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); - sm_nelmts = sm_nbytes / p_type_nbytes; + sm_nelmts = sm_nbytes / p_type_nbytes; - if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* The stripmine loop */ - HDmemset(hs_offset, 0, sizeof hs_offset); - HDmemset(zero, 0, sizeof zero); - - for (elmtno = 0; elmtno < (hsize_t)p_nelmts; elmtno += hs_nelmts) { - /* Calculate the hyperslab size */ - if (ndims > 0) { - for (i = 0, hs_nelmts = 1; i < (size_t)ndims; i++) { - hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) - ? (total_size[i] - hs_offset[i]) - : (sm_size[i])); - hs_nelmts *= hs_size[i]; - } - - if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < - 0) - H5_LIBRARY_ERROR(ENVONLY); + if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < - 0) - H5_LIBRARY_ERROR(ENVONLY); + /* The stripmine loop */ + HDmemset(hs_offset, 0, sizeof hs_offset); + HDmemset(zero, 0, sizeof zero); + + for (elmtno = 0; elmtno < (hsize_t)p_nelmts; elmtno += hs_nelmts) { + /* Calculate the hyperslab size */ + if (sndims > 0) { + for (i = 0, hs_nelmts = 1; i < (size_t)sndims; i++) { + hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) + ? (total_size[i] - hs_offset[i]) + : (sm_size[i])); + hs_nelmts *= hs_size[i]; } - else { - if (H5Sselect_all(f_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); - if (H5Sselect_all(sm_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); - hs_nelmts = 1; - } + if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else { + if (H5Sselect_all(f_space) < 0) + H5_LIBRARY_ERROR(ENVONLY); - /* Read the data */ - if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) + if (H5Sselect_all(sm_space) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (binary_order == 99) { - if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } + hs_nelmts = 1; + } - /* Reclaim any VL memory, if necessary */ - if (vl_data) { - if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } + /* Read the data */ + if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } - /* Calculate the next hyperslab offset */ - for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) { - hs_offset[i - 1] += hs_size[i - 1]; + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } - if (hs_offset[i - 1] == total_size[i - 1]) - hs_offset[i - 1] = 0; - else - carry = 0; - } + /* Calculate the next hyperslab offset */ + for (i = (size_t)sndims, carry = 1; i > 0 && carry; --i) { + hs_offset[i - 1] += hs_size[i - 1]; + + if (hs_offset[i - 1] == total_size[i - 1]) + hs_offset[i - 1] = 0; + else + carry = 0; } } } @@ -3148,15 +3144,12 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order { hid_t f_space = H5I_INVALID_HID; /* file data space */ hsize_t alloc_size; - int ndims; /* rank of dataspace */ - unsigned i; /* counters */ - hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ - hssize_t p_nelmts; /* total selected elmts */ + int sndims; /* rank of dataspace */ + unsigned i; /* counters */ + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset */ + int ret_value = 0; - void *sm_buf = NULL; /* buffer for raw data */ - hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ - - int ret_value = 0; + unsigned char *sm_buf = NULL; /* buffer for raw data */ /* VL data special information */ unsigned int vl_data = 0; /* contains VL datatypes */ @@ -3172,18 +3165,20 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order if (H5I_INVALID_HID == (f_space = H5Aget_space(attr_id))) H5_LIBRARY_ERROR(ENVONLY); - if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + if ((sndims = H5Sget_simple_extent_ndims(f_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + hssize_t p_nelmts; /* total selected elmts */ + if ((p_nelmts = H5Sget_simple_extent_npoints(f_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == - (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + (sm_buf = (unsigned char *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); /* Read the data */ @@ -3200,6 +3195,8 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order } } else { + hsize_t p_nelmts; /* total selected elmts */ + switch (binary_order) { case 1: { if ((p_type = h5str_get_native_type(f_type)) < 0) @@ -3230,45 +3227,40 @@ h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order } } - if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { - if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); - /* Calculate the number of elements we're going to print */ - p_nelmts = 1; + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; - if (ndims > 0) { - for (i = 0; i < (size_t)ndims; i++) - p_nelmts *= total_size[i]; - } /* end if */ + if (sndims > 0) { + for (i = 0; i < (size_t)sndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ - if (p_nelmts > 0) { - /* Check if we have VL data in the dataset's datatype */ - if (h5str_detect_vlen(p_type) != 0) - vl_data = 1; + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; - alloc_size = (size_t)p_nelmts * H5Tget_size(p_type); - if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); + alloc_size = (size_t)p_nelmts * H5Tget_size(p_type); + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); - /* Read the data */ - if (H5Aread(attr_id, p_type, sm_buf) < 0) - H5_LIBRARY_ERROR(ENVONLY); + /* Read the data */ + if (H5Aread(attr_id, p_type, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (binary_order == 99) { - if (h5str_dump_simple_data(ENVONLY, stream, attr_id, p_type, sm_buf, (size_t)p_nelmts) < - 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (h5str_render_bin_output(stream, attr_id, p_type, sm_buf, (size_t)p_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, attr_id, p_type, sm_buf, (size_t)p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, attr_id, p_type, sm_buf, (size_t)p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } - /* Reclaim any VL memory, if necessary */ - if (vl_data) { - if (H5Treclaim(p_type, f_space, H5P_DEFAULT, sm_buf) < 0) - H5_LIBRARY_ERROR(ENVONLY); - } + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, f_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); } } } diff --git a/java/test/TestH5Fparams.java b/java/test/TestH5Fparams.java index 6accc3b..3fcfe3b 100644 --- a/java/test/TestH5Fparams.java +++ b/java/test/TestH5Fparams.java @@ -77,6 +77,7 @@ public class TestH5Fparams { H5.H5Funmount(-1, null); } + @SuppressWarnings("deprecation") @Ignore public void testH5Fis_hdf5_text() { diff --git a/java/test/TestH5Ocreate.java b/java/test/TestH5Ocreate.java index 096abcd..eb57938 100644 --- a/java/test/TestH5Ocreate.java +++ b/java/test/TestH5Ocreate.java @@ -449,6 +449,7 @@ public class TestH5Ocreate { ((idata)((H5O_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2") == 0); } + @SuppressWarnings("deprecation") @Test public void testH5Ocomment() { @@ -479,6 +480,7 @@ public class TestH5Ocreate { assertTrue("H5Oget_comment: ", obj_comment.compareTo("Test Comment") == 0); } + @SuppressWarnings("deprecation") @Test public void testH5Ocomment_clear() { @@ -525,6 +527,7 @@ public class TestH5Ocreate { assertTrue("H5Oget_comment: ", obj_comment == null); } + @SuppressWarnings("deprecation") @Test public void testH5Ocomment_by_name() { @@ -548,6 +551,7 @@ public class TestH5Ocreate { assertTrue("H5Oget_comment_by_name: ", obj_comment.compareTo("Test Comment") == 0); } + @SuppressWarnings("deprecation") @Test public void testH5Ocomment_by_name_clear() { diff --git a/java/test/TestH5Oparams.java b/java/test/TestH5Oparams.java index 280e9fd..296babc 100644 --- a/java/test/TestH5Oparams.java +++ b/java/test/TestH5Oparams.java @@ -168,6 +168,7 @@ public class TestH5Oparams { H5.H5Ovisit_by_name(-1, "Bogus", -1, -1, null, null, 0, -1); } + @SuppressWarnings("deprecation") @Test(expected = HDF5LibraryException.class) public void testH5Oset_comment_invalid() throws Throwable { @@ -180,12 +181,14 @@ public class TestH5Oparams { H5.H5Oget_comment(-1); } + @SuppressWarnings("deprecation") @Test(expected = HDF5LibraryException.class) public void testH5Oset_comment_by_name_invalid() throws Throwable { H5.H5Oset_comment_by_name(-1, "Bogus", null, -1); } + @SuppressWarnings("deprecation") @Test(expected = NullPointerException.class) public void testH5Oset_comment_by_name_null() throws Throwable { diff --git a/test/tmisc.c b/test/tmisc.c index c8da98c..429b275 100644 --- a/test/tmisc.c +++ b/test/tmisc.c @@ -3978,7 +3978,7 @@ test_misc22(void) if ((prec[j] + offsets[k]) > (H5Tget_size(idts[i]) * 8)) continue; - MESSAGE(5, (" Testing datatypes size=%d precision=%u offset=%d\n", H5Tget_size(idts[i]), + MESSAGE(5, (" Testing datatypes size=%zu precision=%u offset=%d\n", H5Tget_size(idts[i]), (unsigned)prec[j], (unsigned)offsets[k])); /* Create the DCPL */ |