diff options
author | Allen Byrne <byrn@hdfgroup.org> | 2016-09-27 21:39:41 (GMT) |
---|---|---|
committer | Allen Byrne <byrn@hdfgroup.org> | 2016-09-27 21:39:52 (GMT) |
commit | d8e0019b3ecd7707c4e586db88469f7878176d29 (patch) | |
tree | c3dce3c16cd6a767eaa0a6bfc368d963cc1fe0ce | |
parent | b2cb046d514861c54bd33a1ac85aa67ded3e240d (diff) | |
download | hdf5-d8e0019b3ecd7707c4e586db88469f7878176d29.zip hdf5-d8e0019b3ecd7707c4e586db88469f7878176d29.tar.gz hdf5-d8e0019b3ecd7707c4e586db88469f7878176d29.tar.bz2 |
HDFFV-9974: Correct parsing of UD filter parameters.
Verified by user, who reported issue.
merge from
https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/commits/b947f7e911e498f5455a78836a6f82a042dd5b33
-rw-r--r-- | MANIFEST | 1 | ||||
-rw-r--r-- | tools/h5repack/CMakeTests.cmake | 9 | ||||
-rw-r--r-- | tools/h5repack/h5repack_parse.c | 776 | ||||
-rw-r--r-- | tools/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst | 9 |
4 files changed, 357 insertions, 438 deletions
@@ -2032,6 +2032,7 @@ ./tools/h5repack/testfiles/h5repack_layout.h5.ddl ./tools/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl ./tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl +./tools/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst # jam utility and tests ./tools/h5jam/h5jam.c diff --git a/tools/h5repack/CMakeTests.cmake b/tools/h5repack/CMakeTests.cmake index b87de7b..804c455 100644 --- a/tools/h5repack/CMakeTests.cmake +++ b/tools/h5repack/CMakeTests.cmake @@ -91,6 +91,7 @@ ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/plugin_test.h5repack_layout.h5.tst ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.UD.h5-plugin_none.ddl ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/plugin_none.h5repack_layout.UD.h5.tst + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-plugin_zero.tst ) foreach (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) @@ -208,7 +209,7 @@ -D "TEST_OUTPUT=${resultfile}-${testname}.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_FILTER:STRING=${testfilter}" - -D "TEST_REFERENCE=${resultfile}.tst" + -D "TEST_REFERENCE=${resultfile}-${testname}.tst" -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" ) endif (HDF5_ENABLE_USING_MEMCHECKER) @@ -988,6 +989,12 @@ ############################################################################## ADD_H5_UD_TEST (plugin_test 0 h5repack_layout.h5 -v -f UD=257,1,9) ADD_H5_UD_TEST (plugin_none 0 h5repack_layout.UD.h5 -v -f NONE) + # check for no parameters + set (TESTRETVAL 255) + if (WIN32) + set (TESTRETVAL -1) + endif() + ADD_H5_CMP_TEST (plugin_zero "" "TEST" ${TESTRETVAL} h5repack_layout.h5 -v -f UD=250,0) if (HDF5_TEST_VFD) # Run test with different Virtual File Driver diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c index 1d71c13..004b9e4 100644 --- a/tools/h5repack/h5repack_parse.c +++ b/tools/h5repack/h5repack_parse.c @@ -31,493 +31,425 @@ * FLET, to apply the HDF5 checksum filter * NBIT, to apply the HDF5 NBIT filter (NBIT compression) * SOFF, to apply the HDF5 scale+offset filter (compression) - * UD, to apply a User Defined filter k, m, n1[,…,nm] + * UD, to apply a User Defined filter k,m,n1[,…,nm] * NONE, to remove the filter * * Examples: * "GZIP=6" * "A,B:NONE" - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: September, 23, 2003 - * *------------------------------------------------------------------------- */ - - -obj_list_t* parse_filter(const char *str, - int *n_objs, - filter_info_t *filt, - pack_opt_t *options, - int *is_glb) -{ - unsigned i, u; +obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt, + pack_opt_t *options, int *is_glb) { + size_t i, m, u; char c; - size_t len=HDstrlen(str); - int j, m, n, k, l, p, r, q, end_obj=-1, no_param=0; + size_t len = HDstrlen(str); + int k, l, p, q, end_obj = -1, no_param = 0; + unsigned j, n; char sobj[MAX_NC_NAME]; char scomp[10]; char stype[6]; char smask[3]; - obj_list_t* obj_list=NULL; + obj_list_t* obj_list = NULL; unsigned pixels_per_block; - /* initialize compression info */ - HDmemset(filt,0,sizeof(filter_info_t)); + HDmemset(filt, 0, sizeof(filter_info_t)); *is_glb = 0; /* check for the end of object list and number of objects */ - for ( i = 0, n = 0; i < len; i++) - { + for (i = 0, n = 0; i < len; i++) { c = str[i]; - if ( c==':' ) - { - end_obj=i; - } - if ( c==',' ) - { + if (c == ':') + end_obj = (int) i; + if (c == ',') n++; - } } - if (end_obj==-1) /* missing : */ - { + /* Check for missing : */ + if (end_obj == -1) { /* apply to all objects */ - options->all_filter=1; + options->all_filter = 1; *is_glb = 1; } n++; - obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); - if (obj_list==NULL) - { + obj_list = (obj_list_t *) HDmalloc(n * sizeof(obj_list_t)); + if (obj_list == NULL) { error_msg("could not allocate object list\n"); return NULL; } - *n_objs=n; + *n_objs = n; /* get object list */ - for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++) - { - c = str[j]; - sobj[k] = c; - if ( c==',' || j==end_obj-1) - { - if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; - HDstrcpy(obj_list[n].obj,sobj); - HDmemset(sobj,0,sizeof(sobj)); - n++; - k=-1; + if (end_obj > 0) + for (j = 0, k = 0, n = 0; j < (unsigned) end_obj; j++, k++) { + c = str[j]; + sobj[k] = c; + if (c == ',' || j == (unsigned) (end_obj - 1)) { + if (c == ',') + sobj[k] = '\0'; + else + sobj[k + 1] = '\0'; + HDstrcpy(obj_list[n].obj, sobj); + HDmemset(sobj, 0, sizeof(sobj)); + n++; + k = -1; + } } - } /* nothing after : */ - if (end_obj+1==(int)len) - { - if (obj_list) HDfree(obj_list); - error_msg("input Error: Invalid compression type in <%s>\n",str); + if (end_obj + 1 == (int) len) { + if (obj_list) + HDfree(obj_list); + error_msg("input Error: Invalid compression type in <%s>\n", str); HDexit(EXIT_FAILURE); } - /* get filter additional parameters */ - m=0; - for ( i=end_obj+1, k=0, j=0; i<len; i++,k++) - { + m = 0; + for (i = (size_t)(end_obj + 1), k = 0, j = 0; i < len; i++, k++) { c = str[i]; - scomp[k]=c; - if ( c=='=' || i==len-1) - { - if ( c=='=') /*one more parameter */ - { - scomp[k]='\0'; /*cut space */ + scomp[k] = c; + if (c == '=' || i == len - 1) { + if (c == '=') { /*one more parameter */ + scomp[k] = '\0'; /*cut space */ /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - * szip has the format SZIP=<pixels per block,coding> - * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' - * example SZIP=8,NN - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"SZIP")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit of szip */ - l=0; /* start EC or NN search */ - u++; /* skip ',' */ + * H5Z_FILTER_SZIP + * szip has the format SZIP=<pixels per block,coding> + * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' + * example SZIP=8,NN + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp, "SZIP") == 0) { + l = -1; /* mask index check */ + for (m = 0, u = i + 1; u < len; u++, m++) { + if (str[u] == ',') { + stype[m] = '\0'; /* end digit of szip */ + l = 0; /* start EC or NN search */ + u++; /* skip ',' */ } c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("compression parameter not digit in <%s>\n",str); + if (!HDisdigit(c) && l == -1) { + if (obj_list) + HDfree(obj_list); + error_msg("compression parameter not digit in <%s>\n", str); HDexit(EXIT_FAILURE); } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; + if (l == -1) + stype[m] = c; + else { + smask[l] = c; l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ + if (l == 2) { + smask[l] = '\0'; + i = len - 1; /* end */ (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"NN")==0) - filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK; - else if (HDstrcmp(smask,"EC")==0) - filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK; - else - { + if (HDstrcmp(smask,"NN") == 0) + filt->cd_values[j++] = H5_SZIP_NN_OPTION_MASK; + else if (HDstrcmp(smask,"EC") == 0) + filt->cd_values[j++] = H5_SZIP_EC_OPTION_MASK; + else { error_msg("szip mask must be 'NN' or 'EC' \n"); HDexit(EXIT_FAILURE); } - - } } - - } /* u */ + } /* u */ } /*if */ /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - * scaleoffset has the format SOFF=<scale_factor,scale_type> - * scale_type can be - * integer datatype, H5Z_SO_INT (IN) - * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) - * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented - * for integer datatypes, scale_factor denotes Minimum Bits - * for float datatypes, scale_factor denotes decimal scale factor - * examples - * SOFF=31,IN - * SOFF=3,DF - *------------------------------------------------------------------------- - */ - - else if (HDstrcmp(scomp,"SOFF")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit */ - l=0; /* start 'IN' , 'DS', or 'ES' search */ - u++; /* skip ',' */ + * H5Z_FILTER_SCALEOFFSET + * scaleoffset has the format SOFF=<scale_factor,scale_type> + * scale_type can be + * integer datatype, H5Z_SO_INT (IN) + * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) + * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented + * for integer datatypes, scale_factor denotes Minimum Bits + * for float datatypes, scale_factor denotes decimal scale factor + * examples + * SOFF=31,IN + * SOFF=3,DF + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "SOFF") == 0) { + l = -1; /* mask index check */ + for (m = 0, u = i + 1; u < len; u++, m++) { + if (str[u] == ',') { + stype[m] = '\0'; /* end digit */ + l = 0; /* start 'IN' , 'DS', or 'ES' search */ + u++; /* skip ',' */ } c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); + if (!HDisdigit(c) && l == -1) { + if (obj_list) + HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n", str); HDexit(EXIT_FAILURE); } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; + if (l == -1) + stype[m] = c; + else { + smask[l] = c; l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ + if (l == 2) { + smask[l] = '\0'; + i = len - 1; /* end */ (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"IN")==0) - filt->cd_values[j++]=H5Z_SO_INT; - else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE) - filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE; - else - { + if (HDstrcmp(smask,"IN") == 0) + filt->cd_values[j++] = H5Z_SO_INT; + else if (HDstrcmp(smask, "DS") == H5Z_SO_FLOAT_DSCALE) + filt->cd_values[j++] = H5Z_SO_FLOAT_DSCALE; + else { error_msg("scale type must be 'IN' or 'DS' \n"); HDexit(EXIT_FAILURE); } - } } - - } /* u */ + } /* u */ } /*if */ + /*------------------------------------------------------------------------- - * User Defined - * has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> - * BZIP2 example - * UD=307,1,9 - *------------------------------------------------------------------------- - */ - - else if (HDstrcmp(scomp,"UD")==0) - { - l=-1; /* filter number index check */ - p=-1; /* CD_VAL count check */ - r=-1; /* CD_VAL check */ - for ( m=0,q=0,u=i+1; u<len; u++,m++,q++) - { - if (str[u]==',') - { - stype[q]='\0'; /* end digit */ - if (l==-1) - { - filt->filtn=atoi(stype); - l=0; + * User Defined + * has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> + * BZIP2 example + * UD=307,1,9 + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "UD") == 0) { + l = -1; /* filter number index check */ + p = -1; /* CD_VAL count check */ + for (m = 0, q = 0, u = i + 1; u < len; u++, m++, q++) { + if (str[u] == ',') { + stype[q] = '\0'; /* end digit */ + if (l == -1) { + filt->filtn = HDatoi(stype); + l = 0; } - else if (p==-1) - { - filt->cd_nelmts=atoi(stype); - p=0; + else if (p == -1) { + filt->cd_nelmts = HDstrtoull(stype, NULL, 0); + p = 0; } else - r=0; - q=0; - u++; /* skip ',' */ + filt->cd_values[j++] = (unsigned)HDstrtoul(stype, NULL, 0); + q = 0; + u++; /* skip ',' */ } c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("filter number parameter is not a digit in <%s>\n",str); + if (!HDisdigit(c) && l == -1) { + if (obj_list) + HDfree(obj_list); + error_msg("filter number parameter is not a digit in <%s>\n", str); HDexit(EXIT_FAILURE); } - stype[q]=c; - if (l==0 && p==0) - { - if (r==0) - filt->cd_values[j++]=atoi(stype); - } - - } /* u */ - - stype[q]='\0'; + stype[q] = c; + } /* for u */ + stype[q] = '\0'; } /*if */ - /*------------------------------------------------------------------------- - * all other filters - *------------------------------------------------------------------------- - */ - - else - { + * all other filters + *------------------------------------------------------------------------- + */ + else { /* here we could have 1 or 2 digits */ - for ( m=0,u=i+1; u<len; u++,m++) - { + for (m = 0, u = i + 1; u < len; u++, m++) { c = str[u]; - if (!isdigit(c)){ - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); + if (!HDisdigit(c)) { + if (obj_list) + HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n", str); HDexit(EXIT_FAILURE); } - stype[m]=c; + stype[m] = c; } /* u */ - stype[m]='\0'; + stype[m] = '\0'; } /*if */ - - - filt->cd_values[j++]=atoi(stype); - i+=m; /* jump */ + filt->cd_values[j++] = (unsigned) HDstrtoul(stype, NULL, 0); + if(filt->cd_nelmts == 0) + j = 0; + i += m; /* jump */ } - else if (i==len-1) - { /*no more parameters */ - scomp[k+1]='\0'; - no_param=1; + else if (i == len - 1) { /*no more parameters */ + scomp[k + 1] = '\0'; + no_param = 1; } /*------------------------------------------------------------------------- - * translate from string to filter symbol - *------------------------------------------------------------------------- - */ + * translate from string to filter symbol + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5Z_FILTER_NONE - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"NONE")==0) - { - filt->filtn=H5Z_FILTER_NONE; + * H5Z_FILTER_NONE + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp, "NONE") == 0) { + filt->filtn = H5Z_FILTER_NONE; filt->cd_nelmts = 0; } /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"GZIP")==0) - { - filt->filtn=H5Z_FILTER_DEFLATE; + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "GZIP") == 0) { + filt->filtn = H5Z_FILTER_DEFLATE; filt->cd_nelmts = 1; - if (no_param) - { /*no more parameters, GZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); + if (no_param) { /*no more parameters, GZIP must have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SZIP")==0) - { - filt->filtn=H5Z_FILTER_SZIP; + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "SZIP") == 0) { + filt->filtn = H5Z_FILTER_SZIP; filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); + if (no_param) { /*no more parameters, SZIP must have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * H5Z_FILTER_SHUFFLE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SHUF")==0) - { - filt->filtn=H5Z_FILTER_SHUFFLE; + * H5Z_FILTER_SHUFFLE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "SHUF") == 0) { + filt->filtn = H5Z_FILTER_SHUFFLE; filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in SHUF <%s>\n",str); + if (m > 0) { /*shuffle does not have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("extra parameter in SHUF <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * H5Z_FILTER_FLETCHER32 - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"FLET")==0) - { - filt->filtn=H5Z_FILTER_FLETCHER32; + * H5Z_FILTER_FLETCHER32 + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "FLET") == 0) { + filt->filtn = H5Z_FILTER_FLETCHER32; filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in FLET <%s>\n",str); + if (m > 0) { /*shuffle does not have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("extra parameter in FLET <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * H5Z_FILTER_NBIT - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"NBIT")==0) - { - filt->filtn=H5Z_FILTER_NBIT; + * H5Z_FILTER_NBIT + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "NBIT") == 0) { + filt->filtn = H5Z_FILTER_NBIT; filt->cd_nelmts = 0; - if (m>0) - { /*nbit does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in NBIT <%s>\n",str); + if (m > 0) { /*nbit does not have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("extra parameter in NBIT <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SOFF")==0) - { - filt->filtn=H5Z_FILTER_SCALEOFFSET; + * H5Z_FILTER_SCALEOFFSET + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "SOFF") == 0) { + filt->filtn = H5Z_FILTER_SCALEOFFSET; filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SOFF must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); + if (no_param) { /*no more parameters, SOFF must have parameter */ + if (obj_list) + HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n", str); HDexit(EXIT_FAILURE); } } /*------------------------------------------------------------------------- - * User Defined Filter - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"UD")==0) - { - if (filt->cd_nelmts != j) - { /* parameters does not match count */ - if (obj_list) HDfree(obj_list); - error_msg("incorrect number of compression parameters in <%s>\n",str); + * User Defined Filter + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp, "UD") == 0) { + /* parameters does not match count */ + if (filt->cd_nelmts != j) { + if (obj_list) + HDfree(obj_list); + error_msg("incorrect number of compression parameters in <%s>\n", str); HDexit(EXIT_FAILURE); } } else { - if (obj_list) HDfree(obj_list); - error_msg("invalid filter type in <%s>\n",str); + if (obj_list) + HDfree(obj_list); + error_msg("invalid filter type in <%s>\n", str); HDexit(EXIT_FAILURE); } } } /*i*/ /*------------------------------------------------------------------------- - * check valid parameters - *------------------------------------------------------------------------- - */ - - switch (filt->filtn) - { + * check valid parameters + *------------------------------------------------------------------------- + */ + switch (filt->filtn) { /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ case H5Z_FILTER_DEFLATE: - if (filt->cd_values[0]>9 ) - { - if (obj_list) HDfree(obj_list); - error_msg("invalid compression parameter in <%s>\n",str); + if (filt->cd_values[0] > 9) { + if (obj_list) + HDfree(obj_list); + error_msg("invalid compression parameter in <%s>\n", str); HDexit(EXIT_FAILURE); } break; - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ case H5Z_FILTER_SZIP: - pixels_per_block=filt->cd_values[0]; - if ((pixels_per_block%2)==1) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is not even in <%s>\n",str); + pixels_per_block = filt->cd_values[0]; + if ((pixels_per_block % 2) == 1) { + if (obj_list) + HDfree(obj_list); + error_msg("pixels_per_block is not even in <%s>\n", str); HDexit(EXIT_FAILURE); } - if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is too large in <%s>\n",str); + if (pixels_per_block > H5_SZIP_MAX_PIXELS_PER_BLOCK) { + if (obj_list) + HDfree(obj_list); + error_msg("pixels_per_block is too large in <%s>\n", str); HDexit(EXIT_FAILURE); } - if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) ) - { - if (obj_list) HDfree(obj_list); + if ((HDstrcmp(smask,"NN") != 0) && (HDstrcmp(smask,"EC") != 0)) { + if (obj_list) + HDfree(obj_list); error_msg("szip mask must be 'NN' or 'EC' \n"); HDexit(EXIT_FAILURE); } break; default: break; - - }; return obj_list; } - - + /*------------------------------------------------------------------------- * Function: parse_layout * @@ -539,176 +471,146 @@ obj_list_t* parse_filter(const char *str, * *------------------------------------------------------------------------- */ -obj_list_t* parse_layout(const char *str, - int *n_objs, - pack_info_t *pack, /* info about layout needed */ - pack_opt_t *options) -{ - obj_list_t* obj_list=NULL; - unsigned i; +obj_list_t* parse_layout(const char *str, unsigned *n_objs, pack_info_t *pack, /* info about layout needed */ +pack_opt_t *options) { + obj_list_t* obj_list = NULL; + unsigned i, j, n; char c; - size_t len=HDstrlen(str); - int j, n, k, end_obj=-1, c_index; + size_t len = HDstrlen(str); + int k, end_obj = -1, c_index; char sobj[MAX_NC_NAME]; char sdim[10]; char slayout[10]; - HDmemset(sdim, '\0', sizeof(sdim)); HDmemset(sobj, '\0', sizeof(sobj)); HDmemset(slayout, '\0', sizeof(slayout)); /* check for the end of object list and number of objects */ - for ( i=0, n=0; i<len; i++) - { + for (i = 0, n = 0; i < len; i++) { c = str[i]; - if ( c==':' ) - { - end_obj=i; - } - if ( c==',' ) - { + if (c == ':') + end_obj = (int) i; + if (c == ',') n++; - } } - if (end_obj==-1) { /* missing : chunk all */ - options->all_layout=1; + if (end_obj == -1) { /* missing : chunk all */ + options->all_layout = 1; } n++; - obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); - if (obj_list==NULL) - { + obj_list = (obj_list_t*) HDmalloc(n * sizeof(obj_list_t)); + if (obj_list == NULL) { error_msg("could not allocate object list\n"); return NULL; } - *n_objs=n; + *n_objs = n; /* get object list */ - for ( j=0, k=0, n=0; j<end_obj; j++,k++) - { - c = str[j]; - sobj[k]=c; - if ( c==',' || j==end_obj-1) - { - if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; - HDstrcpy(obj_list[n].obj,sobj); - HDmemset(sobj,0,sizeof(sobj)); - n++; - k=-1; + if (end_obj > 0) + for (j = 0, k = 0, n = 0; j < (unsigned) end_obj; j++, k++) { + c = str[j]; + sobj[k] = c; + if (c == ',' || j == (unsigned) (end_obj - 1)) { + if (c == ',') + sobj[k] = '\0'; + else + sobj[k + 1] = '\0'; + HDstrcpy(obj_list[n].obj, sobj); + HDmemset(sobj, 0, sizeof(sobj)); + n++; + k = -1; + } } - } /* nothing after : */ - if (end_obj+1==(int)len) - { - if (obj_list) HDfree(obj_list); - error_msg("in parse layout, no characters after : in <%s>\n",str); + if (end_obj + 1 == (int) len) { + if (obj_list) + HDfree(obj_list); + error_msg("in parse layout, no characters after : in <%s>\n", str); HDexit(EXIT_FAILURE); } /* get layout info */ - for ( j=end_obj+1, n=0; n<=5; j++,n++) - { - if (n==5) - { - slayout[n]='\0'; /*cut string */ - if (HDstrcmp(slayout,"COMPA")==0) - pack->layout=H5D_COMPACT; - else if (HDstrcmp(slayout,"CONTI")==0) - pack->layout=H5D_CONTIGUOUS; - else if (HDstrcmp(slayout,"CHUNK")==0) - pack->layout=H5D_CHUNKED; + for (j = (unsigned) (end_obj + 1), n = 0; n <= 5; j++, n++) { + if (n == 5) { + slayout[n] = '\0'; /*cut string */ + if (HDstrcmp(slayout, "COMPA") == 0) + pack->layout = H5D_COMPACT; + else if (HDstrcmp(slayout, "CONTI") == 0) + pack->layout = H5D_CONTIGUOUS; + else if (HDstrcmp(slayout, "CHUNK") == 0) + pack->layout = H5D_CHUNKED; else { - error_msg("in parse layout, not a valid layout in <%s>\n",str); + error_msg("in parse layout, not a valid layout in <%s>\n", str); HDexit(EXIT_FAILURE); } } - else - { + else { c = str[j]; - slayout[n]=c; + slayout[n] = c; } } /* j */ - - if ( pack->layout==H5D_CHUNKED ) - { - + if (pack->layout == H5D_CHUNKED) { /*------------------------------------------------------------------------- - * get chunk info - *------------------------------------------------------------------------- - */ - k=0; - - if (j>(int)len) - { - if (obj_list) HDfree(obj_list); - error_msg("in parse layout, <%s> Chunk dimensions missing\n",str); + * get chunk info + *------------------------------------------------------------------------- + */ + k = 0; + if (j > len) { + if (obj_list) + HDfree(obj_list); + error_msg("in parse layout, <%s> Chunk dimensions missing\n", str); HDexit(EXIT_FAILURE); } - for ( i=j, c_index=0; i<len; i++) - { + for (i = j, c_index = 0; i < len; i++) { c = str[i]; - sdim[k]=c; + sdim[k] = c; k++; /*increment sdim index */ - if (!isdigit(c) && c!='x' - && c!='N' && c!='O' && c!='N' && c!='E' - ){ - if (obj_list) HDfree(obj_list); - error_msg("in parse layout, <%s> Not a valid character in <%s>\n", - sdim,str); + if (!HDisdigit(c) && c != 'x' && c != 'N' && c != 'O' && c != 'N' && c != 'E') { + if (obj_list) + HDfree(obj_list); + error_msg("in parse layout, <%s> Not a valid character in <%s>\n", sdim, str); HDexit(EXIT_FAILURE); } - if ( c=='x' || i==len-1) - { - if ( c=='x') { - sdim[k-1]='\0'; - k=0; - pack->chunk.chunk_lengths[c_index]=atoi(sdim); - if (pack->chunk.chunk_lengths[c_index]==0) { - if (obj_list) HDfree(obj_list); - error_msg("in parse layout, <%s> conversion to number in <%s>\n", - sdim,str); + if (c == 'x' || i == len - 1) { + if (c == 'x') { + sdim[k - 1] = '\0'; + k = 0; + pack->chunk.chunk_lengths[c_index] = HDstrtoull(sdim, NULL, 0); + if (pack->chunk.chunk_lengths[c_index] == 0) { + if (obj_list) + HDfree(obj_list); + error_msg("in parse layout, <%s> conversion to number in <%s>\n", sdim, str); HDexit(EXIT_FAILURE); } c_index++; } - else if (i==len-1) { /*no more parameters */ - sdim[k]='\0'; - k=0; - if (HDstrcmp(sdim,"NONE")==0) - { - pack->chunk.rank=-2; + else if (i == len - 1) { /*no more parameters */ + sdim[k] = '\0'; + k = 0; + if (HDstrcmp(sdim,"NONE") == 0) { + pack->chunk.rank = -2; } - else - { - pack->chunk.chunk_lengths[c_index]=atoi(sdim); - if (pack->chunk.chunk_lengths[c_index]==0){ - if (obj_list) HDfree(obj_list); - error_msg("in parse layout, <%s> conversion to number in <%s>\n", - sdim,str); + else { + pack->chunk.chunk_lengths[c_index] = HDstrtoull(sdim, NULL, 0); + if (pack->chunk.chunk_lengths[c_index] == 0) { + if (obj_list) + HDfree(obj_list); + error_msg("in parse layout, <%s> conversion to number in <%s>\n", sdim, str); HDexit(EXIT_FAILURE); } - pack->chunk.rank=c_index+1; + pack->chunk.rank = c_index + 1; } } /*if */ } /*if c=='x' || i==len-1 */ } /*i*/ - - } /*H5D_CHUNKED*/ - return obj_list; } - - - - - - diff --git a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst new file mode 100644 index 0000000..0993d5b --- /dev/null +++ b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst @@ -0,0 +1,9 @@ +Objects to modify layout are... +Objects to apply filter are... + User Defined 250 +Making file <out-plugin_zero.h5repack_layout.h5>... +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / +h5repack error: <h5repack_layout.h5>: Could not copy data to: out-plugin_zero.h5repack_layout.h5 |