[svn-r275] Initial version of test files for the parallel library.

3 files changed, 501 insertions, 0 deletions

diff --git a/testpar/Makefile.irix64 b/testpar/Makefile.irix64
new file mode 100644
index 0000000..5583187
--- /dev/null
+++ b/testpar/Makefile.irix64
@@ -0,0 +1,102 @@
+
+# Things that Make needs
+.SUFFIXES:
+.SUFFIXES: .c .o
+
+
+# Programs
+SHELL=/bin/sh
+
+# MPI include directories and libs
+MPI_INC=-I$(HOME)/ROMIO/include
+MPI_LIBS=$(HOME)/ROMIO/lib/IRIX64/libmpio.a -lmpi
+
+CC=cc -ansi -64
+# 1429 -- long long non-standard
+WARNING=-woff 1429
+CFLAGS=-g $(WARNING)
+CPPFLAGS=-I. -I../src $(MPI_INC)
+RM=rm -f
+
+# temporary test files that can be cleaned away
+MOSTLYCLEAN=ParaEg1.h5 Eg1.h5 shdf5.c go
+
+# The default is to build the library and programs.
+all: testphdf5 shdf5
+
+
+# These are our main targets. They should be listed in the order to be
+# executed, generally most specific tests to least specific tests.
+PROGS=testphdf5 shdf5
+TESTS=$(PROGS)
+
+# Source and object files for programs...  The PROG_SRC list contains all the
+# source files and is used for things like dependencies, archiving, etc.  The
+# other source lists are for the individual tests, the files of which may
+# overlap with other tests.
+PROG_SRC=testphdf5.c shdf5.c
+PROG_OBJ=$(PROG_SRC:.c=.o)
+
+TESTPHDF5_SRC=testphdf5.c
+TESTPHDF5_OBJ=$(TESTPHDF5_SRC:.c=.o)
+
+# Private header files (not to be installed)...
+PRIVATE_HDR=testhdf5.h
+
+# How to build the programs...
+testphdf5: $(TESTPHDF5_OBJ) ../src/libhdf5.a
+	$(CC) $(CFLAGS) -o $@ $(TESTPHDF5_OBJ) ../src/libhdf5.a $(MPI_LIBS)
+
+shdf5: testphdf5.c ../src/libhdf5.a
+	cp testphdf5.c shdf5.c
+	$(CC) -UHAVE_PARALLEL $(CFLAGS) $(CPPFLAGS) -o $@ $@.c ../src/libhdf5.a $(MPI_LIBS)
+
+
+#------------------------------------------------------------- -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/conclude' file which was generated with config.status
+# from `./config/conclude.in'.
+#------------------------------------------------------------------------------
+
+
+progs: $(PROGS)
+
+# Runs each test in order, passing $(TEST_FLAGS) to the program.
+test: $(PROGS)
+	mpirun -np 2 testphdf5
+	mpirun -np 1 shdf5
+
+# Removes temporary files without removing the final target files.  That is,
+# remove things like object files but not libraries or executables.
+#
+mostlyclean:
+	$(RM) $(LIB_OBJ) $(PROG_OBJ) $(MOSTLYCLEAN)
+
+# Like `mostlyclean' except it also removes the final targets: things like
+# libraries and executables.  This target doesn't remove any file that
+# is part of the HDF5 distribution.
+#
+clean: mostlyclean
+	$(RM) $(LIB) $(PROGS) $(CLEAN)
+
+# Like `clean' except it also removes files that were created by running
+# configure.  If you've unpacked the source and built HDF5 without creating
+# any other files, then `make distclean' will leave only the files that were
+# in the distribution.
+#
+distclean: clean
+	$(RM) .depend TAGS *~ core *.bak *.old *.new $(DISTCLEAN)
+	@if test -f Makefile.in; then					      \
+	   (set -x; $(RM) Makefile);					      \
+	fi
+
+# Like `distclean' except it deletes all files that can be regenerated from
+# the makefile, including those generated from autoheader and autoconf.
+#
+maintainer-clean: distclean
+
+# Implicit rules
+.c.o:
+	$(CC) $(CFLAGS) $(CPPFLAGS) -c $<
+
+
diff --git a/testpar/phdf5sup.c b/testpar/phdf5sup.c
new file mode 100644
index 0000000..e09c403
--- /dev/null
+++ b/testpar/phdf5sup.c
@@ -0,0 +1,54 @@
+/* debugging tools */
+#define MESG(x)\
+	printf("%s\n", x);\
+
+#ifdef HAVE_PARALLEL
+#define MPI_BANNER(mesg)\
+    {printf("================================\n");\
+    printf("Proc %d: ", myid); \
+    printf("*** %s\n", mesg);\
+    printf("================================\n");}
+#else
+#define MPI_BANNER(mesg)\
+    {printf("================================\n");\
+    printf("*** %s\n", mesg);\
+    printf("================================\n");}
+#endif
+
+#ifdef HAVE_PARALLEL
+#define SYNC(comm)\
+    {MPI_BANNER("doing a SYNC"); MPI_Barrier(comm); MPI_BANNER("SYNC DONE");}
+
+/* pause the process for a moment to allow debugger to attach if desired. */
+/* Will pause more if greenlight file is not persent but will eventually */
+/* continue. */
+#include <sys/types.h>
+#include <sys/stat.h>
+void pause_proc(MPI_Comm comm, int myid, char* processor_name, int namelen,
+    int argc, char **argv)
+{
+
+    int pid;
+    struct stat statbuf;
+    char greenlight[] = "go";
+    int maxloop = 10;
+    int time_int = 10;
+
+    /* check if an pause interval option is given */
+    if (--argc > 0 && isdigit(*++argv))
+	time_int = atoi(*argv);
+    pid = getpid();
+    printf("Proc %d (%*s): pid = %d\n",
+	myid, namelen, processor_name, pid);
+
+    if (myid == 0)
+	while ((stat(greenlight, &statbuf) == -1) && maxloop-- > 0){
+	    printf("waiting(%ds) for file %s ...", time_int, greenlight);
+	    fflush(stdout);
+	    sleep(time_int);
+	}
+    MPI_Barrier(comm);
+}
+#endif /*HAVE_PARALLEL*/
+
+
diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c
new file mode 100644
index 0000000..d0f2ce0
--- /dev/null
+++ b/testpar/testphdf5.c
@@ -0,0 +1,345 @@
+
+/* Example of using the parallel HDF5 library to access datasets */
+
+#include <assert.h>
+#include <hdf5.h>
+#include <mpi.h>
+#include <mpio.h>
+
+/* Temporary source code */
+#include <phdf5sup.c>
+/* temporary code end */
+
+/* Constants definitions */
+#ifdef HAVE_PARALLEL
+#define FILE1	"ufs:ParaEg1.h5"
+#define FILE2	"ufs:ParaEg2.h5"
+#else
+#define FILE1	"Eg1.h5"
+#define FILE2	"Eg2.h5"
+#endif
+
+/* 24 is a multiple of 2, 3, 4, 6, 8, 12.  Neat for parallel tests. */
+#define SPACE1_DIM1	24
+#define SPACE1_DIM2	20
+#define SPACE1_RANK	2
+#define DATASETNAME1	"Data1"
+#define DATASETNAME2	"Data2"
+#define DATASETNAME3	"Data3"
+
+
+/* Example of using the parallel HDF5 library to create a dataset */
+void
+phdf5write()
+{
+    hid_t fid1, fid2;		/* HDF5 file IDs */
+    hid_t acc_tpl1;		/* File access templates */
+    hid_t sid1,sid2;   		/* Dataspace ID */
+    hid_t file_dataspace;	/* File dataspace ID */
+    hid_t mem_dataspace;	/* memory dataspace ID */
+    hid_t dataset1, dataset2;	/* Dataset ID */
+    uint32 rank = SPACE1_RANK; 	/* Logical rank of dataspace */
+    size_t dims1[SPACE1_RANK] = {SPACE1_DIM1,SPACE1_DIM2};   	/* dataspace dim sizes */
+    int32 data_array1[SPACE1_DIM1][SPACE1_DIM2];	/* data buffer */
+
+    int   start[SPACE1_RANK];				/* for hyperslab setting */
+    size_t count[SPACE1_RANK], stride[SPACE1_RANK];	/* for hyperslab setting */
+
+    herr_t ret;         	/* Generic return value */
+    int   i, j;
+    int numprocs, myid;
+#ifdef HAVE_PARALLEL
+    MPI_Comm comm = MPI_COMM_WORLD;
+    MPI_Info info = MPI_INFO_NULL;
+
+    /* set up MPI parameters */
+    MPI_Comm_size(MPI_COMM_WORLD,&numprocs);
+    MPI_Comm_rank(MPI_COMM_WORLD,&myid);
+#else
+    numprocs = 1;
+    myid = 0;
+#endif
+
+
+    /* setup file access template */
+    acc_tpl1 = H5Ccreate (H5C_FILE_ACCESS);
+    assert(acc_tpl1 != FAIL);
+    MESG("H5Ccreate access succeed");
+#ifdef HAVE_PARALLEL
+    /* set Independent Parallel access with communicator */
+    ret = H5Cset_mpi(acc_tpl1, comm, info, H5ACC_INDEPENDENT);     
+    assert(ret != FAIL);
+    MESG("H5Cset_mpi succeed");
+#endif
+
+    /* create the file collectively */
+    fid1=H5Fcreate(FILE1,H5ACC_OVERWRITE,0,acc_tpl1);
+    assert(fid1 != FAIL);
+    MESG("H5Fcreate succeed");
+
+    /* Release file-access template */
+    ret=H5Mclose(acc_tpl1);
+    assert(ret != FAIL);
+
+
+    /* setup dimensionality object */
+    sid1 = H5Pcreate_simple (SPACE1_RANK, dims1, NULL);
+    assert (sid1 != FAIL);
+    MESG("H5Pcreate_simple succeed");
+
+    
+    /* create a dataset collectively */
+    dataset1 = H5Dcreate(fid1, DATASETNAME1, H5T_NATIVE_INT32, sid1,
+			H5C_DEFAULT);
+    assert(dataset1 != FAIL);
+    MESG("H5Dcreate succeed");
+
+    /* create another dataset collectively */
+    dataset2 = H5Dcreate(fid1, DATASETNAME2, H5T_NATIVE_INT32, sid1,
+			H5C_DEFAULT);
+    assert(dataset2 != FAIL);
+    MESG("H5Dcreate succeed");
+
+
+
+    /* set up dimensions of the slab this process accesses */
+    start[0] = myid*SPACE1_DIM1/numprocs;
+    start[1] = 0;
+    count[0] = SPACE1_DIM1/numprocs;
+    count[1] = SPACE1_DIM2;
+    stride[0] = 1;
+    stride[1] =1;
+printf("start[]=(%d,%d), count[]=(%lu,%lu), total datapoints=%lu\n",
+start[0], start[1], count[0], count[1], count[0]*count[1]);
+
+    /* put some trivial data in the data_array */
+    for (i=0; i < count[0]; i++){
+	for (j=0; j < count[1]; j++){
+	    data_array1[i][j] = (i+start[0])*100 + (j+1);
+	}
+    }
+    MESG("data_array initialized");
+
+    /* create a file dataspace independently */
+    file_dataspace = H5Dget_space (dataset1);				    
+    assert(file_dataspace != FAIL);					    
+    MESG("H5Dget_space succeed");
+    ret=H5Pset_hyperslab(file_dataspace, start, count, stride); 
+    assert(ret != FAIL);
+    MESG("H5Pset_hyperslab succeed");
+
+    /* create a memory dataspace independently */
+    mem_dataspace = H5Pcreate_simple (SPACE1_RANK, count, NULL);
+    assert (mem_dataspace != FAIL);
+
+    /* write data independently */
+    ret = H5Dwrite(dataset1, H5T_NATIVE_INT32, mem_dataspace, file_dataspace,	    
+	    H5C_DEFAULT, data_array1);					    
+    assert(ret != FAIL);
+    MESG("H5Dwrite succeed");
+
+    /* write data independently */
+    ret = H5Dwrite(dataset2, H5T_NATIVE_INT32, mem_dataspace, file_dataspace,	    
+	    H5C_DEFAULT, data_array1);					    
+    assert(ret != FAIL);
+    MESG("H5Dwrite succeed");
+
+    /* release dataspace ID */
+    H5Pclose(file_dataspace);
+
+    /* close dataset collectively */					    
+    ret=H5Dclose(dataset1);
+    assert(ret != FAIL);
+    ret=H5Dclose(dataset2);
+    assert(ret != FAIL);
+
+    /* release all IDs created */
+    H5Mclose(sid1);
+
+    /* close the file collectively */					    
+    H5Fclose(fid1);							    
+}
+
+/* Example of using the parallel HDF5 library to read a dataset */
+void
+phdf5read()
+{
+    hid_t fid1, fid2;		/* HDF5 file IDs */
+    hid_t acc_tpl1;		/* File access templates */
+    hid_t sid1,sid2;   		/* Dataspace ID */
+    hid_t file_dataspace;	/* File dataspace ID */
+    hid_t mem_dataspace;	/* memory dataspace ID */
+    hid_t dataset1, dataset2;	/* Dataset ID */
+    uint32 rank = SPACE1_RANK; 	/* Logical rank of dataspace */
+    size_t dims1[] = {SPACE1_DIM1,SPACE1_DIM2};   	/* dataspace dim sizes */
+    int32 data_array1[SPACE1_DIM1][SPACE1_DIM2];	/* data buffer */
+
+    int   start[SPACE1_RANK];				/* for hyperslab setting */
+    size_t count[SPACE1_RANK], stride[SPACE1_RANK];	/* for hyperslab setting */
+
+    herr_t ret;         	/* Generic return value */
+    intn   i, j;
+    int numprocs, myid;
+#ifdef HAVE_PARALLEL
+    MPI_Comm comm = MPI_COMM_WORLD;
+    MPI_Info info = MPI_INFO_NULL;
+
+    /* set up MPI parameters */
+    MPI_Comm_size(MPI_COMM_WORLD,&numprocs);
+    MPI_Comm_rank(MPI_COMM_WORLD,&myid);
+#else
+    numprocs = 1;
+    myid = 0;
+#endif
+
+
+    /* setup file access template */
+    acc_tpl1 = H5Ccreate (H5C_FILE_ACCESS);
+    assert(acc_tpl1 != FAIL);
+#ifdef HAVE_PARALLEL
+    /* set Independent Parallel access with communicator */
+    ret = H5Cset_mpi(acc_tpl1, comm, info, H5ACC_INDEPENDENT);     
+    assert(ret != FAIL);
+#endif
+
+
+    /* open the file collectively */
+    fid1=H5Fopen(FILE1,H5ACC_WRITE,acc_tpl1);
+    assert(fid1 != FAIL);
+
+    /* Release file-access template */
+    ret=H5Mclose(acc_tpl1);
+    assert(ret != FAIL);
+
+    /* open the dataset1 collectively */
+    dataset1 = H5Dopen(fid1, DATASETNAME1);
+    assert(dataset1 != FAIL);
+
+    /* open another dataset collectively */
+    dataset2 = H5Dopen(fid1, DATASETNAME1);
+    assert(dataset2 != FAIL);
+
+
+    /* set up dimensions of the slab this process accesses */
+    start[0] = myid*SPACE1_DIM1/numprocs;
+    start[1] = 0;
+    count[0] = SPACE1_DIM1/numprocs;
+    count[1] = SPACE1_DIM2;
+    stride[0] = 1;
+    stride[1] =1;
+printf("start[]=(%d,%d), count[]=(%lu,%lu), total datapoints=%lu\n",
+start[0], start[1], count[0], count[1], count[0]*count[1]);
+
+    /* create a file dataspace independently */
+    file_dataspace = H5Dget_space (dataset1);
+    assert(file_dataspace != FAIL);
+    ret=H5Pset_hyperslab(file_dataspace, start, count, stride); 
+    assert(ret != FAIL);
+
+    /* create a memory dataspace independently */
+    mem_dataspace = H5Pcreate_simple (SPACE1_RANK, count, NULL);
+    assert (mem_dataspace != FAIL);
+
+    
+
+    /* read data independently */
+    ret = H5Dread(dataset1, H5T_NATIVE_INT32, mem_dataspace, file_dataspace,
+	    H5C_DEFAULT, data_array1);
+    assert(ret != FAIL);
+
+    /* print the slab read */
+    for (i=0; i < count[0]; i++){
+	printf("Row %d: ", i+start[0]);
+	for (j=0; j < count[1]; j++){
+	    printf("%d ", data_array1[i][j]);
+	}
+	printf("\n");
+    }
+
+    /* read data independently */
+    ret = H5Dread(dataset2, H5T_NATIVE_INT32, mem_dataspace, file_dataspace,
+	    H5C_DEFAULT, data_array1);
+    assert(ret != FAIL);
+
+    /* print the slab read */
+    for (i=0; i < count[0]; i++){
+	printf("Row %d: ", i+start[0]);
+	for (j=0; j < count[1]; j++){
+	    printf("%d ", data_array1[i][j]);
+	}
+	printf("\n");
+    }
+
+    /* close dataset collectively */
+    ret=H5Dclose(dataset1);
+    assert(ret != FAIL);
+    ret=H5Dclose(dataset2);
+    assert(ret != FAIL);
+
+    /* release all IDs created */
+    H5Pclose(file_dataspace);
+
+    /* close the file collectively */
+    H5Fclose(fid1);
+}
+
+void
+usage()
+{
+    printf("Usage: testphdf5 [-r] [-w]\n");
+    printf("\t-r\b\bno read\n");
+    printf("\t-w\b\bno write\n");
+    printf("\tdefault do write then read\n");
+    printf("\n");
+}
+    
+main(int argc, char **argv)
+{
+    int numprocs, myid, namelen;
+    char processor_name[MPI_MAX_PROCESSOR_NAME];
+    int doread=1;			/* read test */
+    int dowrite=1;			/* write test */
+
+    void usage();
+#ifdef HAVE_PARALLEL
+    MPI_Init(&argc,&argv);
+    MPI_Comm_size(MPI_COMM_WORLD,&numprocs);
+    MPI_Comm_rank(MPI_COMM_WORLD,&myid);
+    MPI_Get_processor_name(processor_name,&namelen);
+pause_proc(MPI_COMM_WORLD, myid, processor_name, namelen, argc, argv);
+#endif
+
+    /* parse option */
+    while (--argc){
+	if (**(++argv) != '-'){
+	    break;
+	}else{
+	    switch(*(*argv+1)){
+		case 'r':   doread = 0; break;
+		case 'w':   dowrite = 0; break;
+		default: usage(); break;
+	    }
+	}
+    }
+
+    if (dowrite){
+	MPI_BANNER("testing PHDF5 writing dataset ...");
+	phdf5write();
+    }
+    if (doread){
+	MPI_BANNER("testing PHDF5 reading dataset ...");
+	phdf5read();
+    }
+
+    if (!(dowrite || doread))
+	usage();
+    else
+	MPI_BANNER("PHDF5 tests finished");
+
+#ifdef HAVE_PARALLEL
+    MPI_Finalize();
+#endif
+
+    return(0);
+}
+