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authorQuincey Koziol <koziol@hdfgroup.org>2013-02-02 01:53:32 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2013-02-02 01:53:32 (GMT)
commita3e98d0e36a0fbd6caae0a4a83863a78c2e25f50 (patch)
tree14e6c86e83d0b65e7033f9d31b0163404b41e36d
parent5140343f45312d4d2e486e6cc7645c7bc42b1267 (diff)
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[svn-r23219] Description:
Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
-rw-r--r--c++/src/H5CommonFG.cpp49
-rw-r--r--src/H5.c10
-rw-r--r--src/H5FDcore.c8
-rw-r--r--src/H5FDmulti.c110
-rw-r--r--src/H5Gint.c4
-rw-r--r--src/H5Gname.c53
-rw-r--r--src/H5system.c526
-rw-r--r--test/accum.c22
-rw-r--r--test/stab.c9
-rw-r--r--test/vfd.c219
-rw-r--r--tools/h5jam/h5unjam.c165
-rw-r--r--tools/lib/h5tools.c52
12 files changed, 623 insertions, 604 deletions
diff --git a/c++/src/H5CommonFG.cpp b/c++/src/H5CommonFG.cpp
index dcc331f..b3889a0 100644
--- a/c++/src/H5CommonFG.cpp
+++ b/c++/src/H5CommonFG.cpp
@@ -130,9 +130,7 @@ Group CommonFG::openGroup( const char* name ) const
// If the opening of the group failed, throw an exception
if( group_id < 0 )
- {
throwException("openGroup", "H5Gopen2 failed");
- }
// No failure, create and return the Group object
Group group( group_id );
@@ -174,9 +172,7 @@ DataSet CommonFG::createDataSet( const char* name, const DataType& data_type, co
// If the creation of the dataset failed, throw an exception
if( dataset_id < 0 )
- {
throwException("createDataSet", "H5Dcreate2 failed");
- }
// No failure, create and return the DataSet object
DataSet dataset( dataset_id );
@@ -270,9 +266,8 @@ void CommonFG::link( H5L_type_t link_type, const char* curr_name, const char* ne
break;
} /* end switch */
- if( ret_value < 0 ) {
+ if( ret_value < 0 )
throwException("link", "creating link failed");
- }
}
//--------------------------------------------------------------------------
@@ -300,9 +295,7 @@ void CommonFG::unlink( const char* name ) const
{
herr_t ret_value = H5Ldelete( getLocId(), name, H5P_DEFAULT );
if( ret_value < 0 )
- {
throwException("unlink", "H5Ldelete failed");
- }
}
//--------------------------------------------------------------------------
@@ -336,9 +329,7 @@ void CommonFG::move( const char* src, const char* dst ) const
{
herr_t ret_value = H5Lmove( getLocId(), src, H5L_SAME_LOC, dst, H5P_DEFAULT, H5P_DEFAULT );
if( ret_value < 0 )
- {
throwException("move", "H5Lmove failed");
- }
}
//--------------------------------------------------------------------------
@@ -371,9 +362,7 @@ void CommonFG::getObjinfo( const char* name, hbool_t follow_link, H5G_stat_t& st
{
herr_t ret_value = H5Gget_objinfo( getLocId(), name, follow_link, &statbuf );
if( ret_value < 0 )
- {
throwException("getObjinfo", "H5Gget_objinfo failed");
- }
}
//--------------------------------------------------------------------------
@@ -400,9 +389,7 @@ void CommonFG::getObjinfo( const char* name, H5G_stat_t& statbuf ) const
{
herr_t ret_value = H5Gget_objinfo( getLocId(), name, 0, &statbuf );
if( ret_value < 0 )
- {
throwException("getObjinfo", "H5Gget_objinfo failed");
- }
}
//--------------------------------------------------------------------------
@@ -440,9 +427,8 @@ H5std_string CommonFG::getLinkval( const char* name, size_t size ) const
{
ret_value = H5Lget_info(getLocId(), name, &linkinfo, H5P_DEFAULT);
if( ret_value < 0 )
- {
throwException("getLinkval", "H5Lget_info to find buffer size failed");
- }
+
val_size = linkinfo.u.val_size;
}
@@ -453,9 +439,8 @@ H5std_string CommonFG::getLinkval( const char* name, size_t size ) const
ret_value = H5Lget_val(getLocId(), name, value_C, val_size, H5P_DEFAULT);
if( ret_value < 0 )
- {
throwException("getLinkval", "H5Lget_val failed");
- }
+
value = H5std_string(value_C);
delete []value_C;
}
@@ -498,9 +483,7 @@ void CommonFG::setComment( const char* name, const char* comment ) const
{
herr_t ret_value = H5Oset_comment_by_name( getLocId(), name, comment, H5P_DEFAULT );
if( ret_value < 0 )
- {
throwException("setComment", "H5Oset_comment_by_name failed");
- }
}
//--------------------------------------------------------------------------
@@ -530,9 +513,7 @@ void CommonFG::removeComment(const char* name) const
{
herr_t ret_value = H5Oset_comment_by_name(getLocId(), name, NULL, H5P_DEFAULT);
if( ret_value < 0 )
- {
throwException("removeComment", "H5Oset_comment_by_name failed");
- }
}
//--------------------------------------------------------------------------
@@ -588,9 +569,8 @@ H5std_string CommonFG::getComment( const char* name, size_t bufsize ) const
// if H5Oget_comment_by_name returns SUCCEED, return the string comment,
// otherwise, throw an exception
if( ret_value < 0 )
- {
throwException("getComment", "H5Oget_comment_by_name failed");
- }
+
H5std_string comment = H5std_string(comment_C);
delete []comment_C;
return (comment);
@@ -628,9 +608,7 @@ void CommonFG::mount( const char* name, H5File& child, PropList& plist ) const
// Raise exception if H5Fmount returns negative value
if( ret_value < 0 )
- {
throwException("mount", "H5Fmount failed");
- }
}
//--------------------------------------------------------------------------
@@ -659,9 +637,7 @@ void CommonFG::unmount( const char* name ) const
// Raise exception if H5Funmount returns negative value
if( ret_value < 0 )
- {
throwException("unmount", "H5Funmount failed");
- }
}
//--------------------------------------------------------------------------
@@ -1006,9 +982,7 @@ hsize_t CommonFG::getNumObjs() const
herr_t ret_value = H5Gget_info(getLocId(), &ginfo);
if(ret_value < 0)
- {
throwException("getNumObjs", "H5Gget_info failed");
- }
return (ginfo.nlinks);
}
@@ -1032,9 +1006,7 @@ H5std_string CommonFG::getObjnameByIdx(hsize_t idx) const
// call H5Lget_name_by_idx with name as NULL to get its length
ssize_t name_len = H5Lget_name_by_idx(getLocId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, NULL, 0, H5P_DEFAULT);
if(name_len < 0)
- {
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
- }
// now, allocate C buffer to get the name
char* name_C = new char[name_len+1];
@@ -1067,9 +1039,8 @@ ssize_t CommonFG::getObjnameByIdx(hsize_t idx, char* name, size_t size) const
{
ssize_t name_len = H5Lget_name_by_idx(getLocId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name, size, H5P_DEFAULT);
if(name_len < 0)
- {
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
- }
+
return (name_len);
}
@@ -1085,9 +1056,8 @@ ssize_t CommonFG::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size)
char* name_C = new char[size];
ssize_t name_len = getObjnameByIdx(idx, name_C, size);
if(name_len < 0)
- {
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
- }
+
name = H5std_string(name_C);
delete []name_C;
return (name_len);
@@ -1107,9 +1077,8 @@ H5G_obj_t CommonFG::getObjTypeByIdx(hsize_t idx) const
{
H5G_obj_t obj_type = H5Gget_objtype_by_idx(getLocId(), idx);
if (obj_type == H5G_UNKNOWN)
- {
throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed");
- }
+
return (obj_type);
}
@@ -1135,9 +1104,7 @@ H5G_obj_t CommonFG::getObjTypeByIdx(hsize_t idx, char* type_name) const
case H5G_TYPE: HDstrcpy(type_name, "datatype"); break;
case H5G_UNKNOWN:
default:
- {
throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed");
- }
}
return (obj_type);
}
@@ -1163,9 +1130,7 @@ H5G_obj_t CommonFG::getObjTypeByIdx(hsize_t idx, H5std_string& type_name) const
case H5G_TYPE: type_name = H5std_string("datatype"); break;
case H5G_UNKNOWN:
default:
- {
throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed");
- }
}
return (obj_type);
}
diff --git a/src/H5.c b/src/H5.c
index 4176d96..14ec7ca 100644
--- a/src/H5.c
+++ b/src/H5.c
@@ -714,14 +714,14 @@ H5check_version(unsigned majnum, unsigned minnum, unsigned relnum)
if (!disable_version_check){
/*
- *verify if H5_VERS_INFO is consistent with the other version information.
- *Check only the first sizeof(lib_str) char. Assume the information
- *will fit within this size or enough significance.
+ * Verify if H5_VERS_INFO is consistent with the other version information.
+ * Check only the first sizeof(lib_str) char. Assume the information
+ * will fit within this size or enough significance.
*/
- sprintf(lib_str, "HDF5 library version: %d.%d.%d",
+ HDsnprintf(lib_str, sizeof(lib_str), "HDF5 library version: %d.%d.%d",
H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE);
if(*substr) {
- HDstrcat(lib_str, "-");
+ HDstrncat(lib_str, "-", 1);
HDstrncat(lib_str, substr, (sizeof(lib_str) - HDstrlen(lib_str)) - 1);
} /* end if */
if (HDstrcmp(lib_str, H5_lib_vers_info_g)){
diff --git a/src/H5FDcore.c b/src/H5FDcore.c
index 03cc15e..43c8945 100644
--- a/src/H5FDcore.c
+++ b/src/H5FDcore.c
@@ -570,6 +570,14 @@ H5FD_core_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
ret_value = (H5FD_t *)file;
done:
+ if(!ret_value && file) {
+ if(file->fd >= 0)
+ HDclose(file->fd);
+ H5MM_xfree(file->name);
+ H5MM_xfree(file->mem);
+ H5MM_xfree(file);
+ } /* end if */
+
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_core_open() */
diff --git a/src/H5FDmulti.c b/src/H5FDmulti.c
index 16934e3..c2701c4 100644
--- a/src/H5FDmulti.c
+++ b/src/H5FDmulti.c
@@ -77,6 +77,7 @@
#define H5FD_MULTI_DXPL_PROP_NAME "H5FD_MULTI_DXPL"
#define H5FD_MULTI_DXPL_PROP_SIZE sizeof(H5FD_multi_dxpl_t)
+#define H5FD_MULT_MAX_FILE_NAME_LEN 1024
/* The driver identification number, initialized at runtime */
static hid_t H5FD_MULTI_g = 0;
@@ -207,12 +208,14 @@ static char *
my_strdup(const char *s)
{
char *x;
+ size_t str_len;
if(!s)
return NULL;
- if(NULL == (x = (char *)malloc(strlen(s) + 1)))
+ str_len = strlen(s) + 1;
+ if(NULL == (x = (char *)malloc(str_len)))
return NULL;
- strcpy(x, s);
+ memcpy(x, s, str_len);
return x;
}
@@ -301,7 +304,7 @@ H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id,
H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
hid_t memb_fapl[H5FD_MEM_NTYPES];
const char *memb_name[H5FD_MEM_NTYPES];
- char meta_name[1024], raw_name[1024];
+ char meta_name[H5FD_MULT_MAX_FILE_NAME_LEN], raw_name[H5FD_MULT_MAX_FILE_NAME_LEN];
haddr_t memb_addr[H5FD_MEM_NTYPES];
/*NO TRACE*/
@@ -324,25 +327,39 @@ H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id,
/* The names */
/* process meta filename */
- if (meta_ext){
- if (strstr(meta_ext, "%s"))
- strcpy(meta_name, meta_ext);
+ if(meta_ext) {
+ if(strstr(meta_ext, "%s")) {
+ /* Note: this doesn't accommodate for when the '%s' in the user's
+ * string is at a position >sizeof(meta_name) - QK & JK - 2013/01/17
+ */
+ strncpy(meta_name, meta_ext, sizeof(meta_name));
+ meta_name[sizeof(meta_name) - 1] = '\0';
+ }
else
- sprintf(meta_name, "%%s%s", meta_ext);
+ snprintf(meta_name, sizeof(meta_name), "%%s%s", meta_ext);
+ }
+ else {
+ strncpy(meta_name, "%s.meta", sizeof(meta_name));
+ meta_name[sizeof(meta_name) - 1] = '\0';
}
- else
- strcpy(meta_name, "%s.meta");
memb_name[H5FD_MEM_SUPER] = meta_name;
/* process raw filename */
- if (raw_ext){
- if (strstr(raw_ext, "%s"))
- strcpy(raw_name, raw_ext);
+ if(raw_ext) {
+ if(strstr(raw_ext, "%s")) {
+ /* Note: this doesn't accommodate for when the '%s' in the user's
+ * string is at a position >sizeof(raw_name) - QK & JK - 2013/01/17
+ */
+ strncpy(raw_name, raw_ext, sizeof(raw_name));
+ raw_name[sizeof(raw_name) - 1] = '\0';
+ }
else
- sprintf(raw_name, "%%s%s", raw_ext);
+ snprintf(raw_name, sizeof(raw_name), "%%s%s", raw_ext);
+ }
+ else {
+ strncpy(raw_name, "%s.raw", sizeof(raw_name));
+ raw_name[sizeof(raw_name) - 1] = '\0';
}
- else
- strcpy(raw_name, "%s.raw");
memb_name[H5FD_MEM_DRAW] = raw_name;
/* The sizes */
@@ -471,7 +488,7 @@ H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map,
if (!memb_name) {
assert(strlen(letters)==H5FD_MEM_NTYPES);
for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; mt=(H5FD_mem_t)(mt+1)) {
- sprintf(_memb_name[mt], "%%s-%c.h5", letters[mt]);
+ snprintf(_memb_name[mt], sizeof(_memb_name[mt]), "%%s-%c.h5", letters[mt]);
_memb_name_ptrs[mt] = _memb_name[mt];
}
memb_name = _memb_name_ptrs;
@@ -573,12 +590,11 @@ H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map/*out*/,
memb_fapl[mt] = fa->memb_fapl[mt]; /*default or bad ID*/
}
}
- if (memb_name) {
- for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; mt=(H5FD_mem_t)(mt+1)) {
- if (fa->memb_name[mt]) {
- memb_name[mt] = (char *)malloc(strlen(fa->memb_name[mt])+1);
- strcpy(memb_name[mt], fa->memb_name[mt]);
- } else
+ if(memb_name) {
+ for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) {
+ if(fa->memb_name[mt])
+ memb_name[mt] = my_strdup(fa->memb_name[mt]);
+ else
memb_name[mt] = NULL;
}
}
@@ -969,17 +985,17 @@ H5FD_multi_sb_encode(H5FD_t *_file, char *name/*out*/,
p += sizeof(haddr_t);
nseen++;
} END_MEMBERS;
- if (H5Tconvert(H5T_NATIVE_HADDR, H5T_STD_U64LE, nseen*2, buf+8, NULL,
- H5P_DEFAULT)<0)
+ if (H5Tconvert(H5T_NATIVE_HADDR, H5T_STD_U64LE, nseen*2, buf+8, NULL, H5P_DEFAULT)<0)
H5Epush_ret(func, H5E_ERR_CLS, H5E_DATATYPE, H5E_CANTCONVERT, "can't convert superblock info", -1)
/* Encode all name templates */
p = buf + 8 + nseen*2*8;
UNIQUE_MEMBERS(file->fa.memb_map, mt) {
size_t n = strlen(file->fa.memb_name[mt]) + 1;
- strcpy((char *)p, file->fa.memb_name[mt]);
+ strncpy((char *)p, file->fa.memb_name[mt], n);
p += n;
- for (i=n; i%8; i++) *p++ = '\0';
+ for (i=n; i%8; i++)
+ *p++ = '\0';
} END_MEMBERS;
return 0;
@@ -1209,19 +1225,21 @@ H5FD_multi_fapl_copy(const void *_old_fa)
ALL_MEMBERS(mt) {
if (old_fa->memb_fapl[mt]>=0) {
new_fa->memb_fapl[mt] = H5Pcopy(old_fa->memb_fapl[mt]);
- if (new_fa->memb_fapl[mt]<0) nerrors++;
+ if(new_fa->memb_fapl[mt]<0)
+ nerrors++;
}
if (old_fa->memb_name[mt]) {
- new_fa->memb_name[mt] = (char *)malloc(strlen(old_fa->memb_name[mt])+1);
+ new_fa->memb_name[mt] = my_strdup(old_fa->memb_name[mt]);
assert(new_fa->memb_name[mt]);
- strcpy(new_fa->memb_name[mt], old_fa->memb_name[mt]);
}
} END_MEMBERS;
if (nerrors) {
ALL_MEMBERS(mt) {
- if (new_fa->memb_fapl[mt]>=0) (void)H5Pclose(new_fa->memb_fapl[mt]);
- if (new_fa->memb_name[mt]) free(new_fa->memb_name[mt]);
+ if (new_fa->memb_fapl[mt]>=0)
+ (void)H5Pclose(new_fa->memb_fapl[mt]);
+ if (new_fa->memb_name[mt])
+ free(new_fa->memb_name[mt]);
} END_MEMBERS;
free(new_fa);
H5Epush_ret(func, H5E_ERR_CLS, H5E_INTERNAL, H5E_BADVALUE, "invalid freespace objects", NULL)
@@ -2191,7 +2209,7 @@ compute_next(H5FD_multi_t *file)
static int
open_members(H5FD_multi_t *file)
{
- char tmp[1024];
+ char tmp[H5FD_MULT_MAX_FILE_NAME_LEN];
int nerrors=0;
static const char *func="(H5FD_multi)open_members"; /* Function Name for error reporting */
@@ -2199,30 +2217,28 @@ open_members(H5FD_multi_t *file)
H5Eclear2(H5E_DEFAULT);
UNIQUE_MEMBERS(file->fa.memb_map, mt) {
- if (file->memb[mt]) continue; /*already open*/
+ if(file->memb[mt])
+ continue; /*already open*/
assert(file->fa.memb_name[mt]);
- sprintf(tmp, file->fa.memb_name[mt], file->name);
+ /* Note: This truncates the user's filename down to only sizeof(tmp)
+ * characters. -QK & JK, 2013/01/17
+ */
+ snprintf(tmp, sizeof(tmp), file->fa.memb_name[mt], file->name);
#ifdef H5FD_MULTI_DEBUG
- if (file->flags & H5F_ACC_DEBUG) {
- fprintf(stderr, "H5FD_MULTI: open member %d \"%s\"\n",
- (int)mt, tmp);
- }
+ if(file->flags & H5F_ACC_DEBUG)
+ fprintf(stderr, "H5FD_MULTI: open member %d \"%s\"\n", (int)mt, tmp);
#endif
H5E_BEGIN_TRY {
- file->memb[mt] = H5FDopen(tmp, file->flags, file->fa.memb_fapl[mt],
- HADDR_UNDEF);
+ file->memb[mt] = H5FDopen(tmp, file->flags, file->fa.memb_fapl[mt], HADDR_UNDEF);
} H5E_END_TRY;
- if (!file->memb[mt]) {
+ if(!file->memb[mt]) {
#ifdef H5FD_MULTI_DEBUG
- if (file->flags & H5F_ACC_DEBUG) {
- fprintf(stderr, "H5FD_MULTI: open failed for member %d\n",
- (int)mt);
- }
+ if(file->flags & H5F_ACC_DEBUG)
+ fprintf(stderr, "H5FD_MULTI: open failed for member %d\n", (int)mt);
#endif
- if (!file->fa.relax || (file->flags & H5F_ACC_RDWR)) {
+ if(!file->fa.relax || (file->flags & H5F_ACC_RDWR))
nerrors++;
- }
}
} END_MEMBERS;
if (nerrors)
diff --git a/src/H5Gint.c b/src/H5Gint.c
index ad2e57e..fe8b995 100644
--- a/src/H5Gint.c
+++ b/src/H5Gint.c
@@ -928,7 +928,7 @@ H5G_visit_cb(const H5O_link_t *lnk, void *_udata)
/* Build the link's relative path name */
HDassert(udata->path[old_path_len] == '\0');
- HDstrcpy(&(udata->path[old_path_len]), lnk->name);
+ HDstrncpy(&(udata->path[old_path_len]), lnk->name, link_name_len + 1);
udata->curr_path_len += link_name_len;
/* Construct the link info from the link message */
@@ -992,7 +992,7 @@ H5G_visit_cb(const H5O_link_t *lnk, void *_udata)
/* Add the path separator to the current path */
HDassert(udata->path[udata->curr_path_len] == '\0');
- HDstrcpy(&(udata->path[udata->curr_path_len]), "/");
+ HDstrncpy(&(udata->path[udata->curr_path_len]), "/", 2);
udata->curr_path_len++;
/* Attempt to get the link info for this group */
diff --git a/src/H5Gname.c b/src/H5Gname.c
index 576d866..6619c86 100644
--- a/src/H5Gname.c
+++ b/src/H5Gname.c
@@ -293,7 +293,9 @@ static H5RS_str_t *
H5G_build_fullpath(const char *prefix, const char *name)
{
char *full_path; /* Full user path built */
+ size_t orig_path_len; /* Original length of the path */
size_t path_len; /* Length of the path */
+ size_t name_len; /* Length of the name */
unsigned need_sep; /* Flag to indicate if separator is needed */
H5RS_str_t *ret_value; /* Return value */
@@ -304,7 +306,7 @@ H5G_build_fullpath(const char *prefix, const char *name)
HDassert(name);
/* Get the length of the prefix */
- path_len = HDstrlen(prefix);
+ orig_path_len = path_len = HDstrlen(prefix);
/* Determine if there is a trailing separator in the name */
if(prefix[path_len - 1] == '/')
@@ -313,20 +315,21 @@ H5G_build_fullpath(const char *prefix, const char *name)
need_sep = 1;
/* Add in the length needed for the '/' separator and the relative path */
- path_len += HDstrlen(name) + need_sep;
+ name_len = HDstrlen(name);
+ path_len += name_len + need_sep;
/* Allocate space for the path */
if(NULL == (full_path = (char *)H5FL_BLK_MALLOC(str_buf, path_len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
/* Build full path */
- HDstrcpy(full_path, prefix);
+ HDstrncpy(full_path, prefix, orig_path_len + 1);
if(need_sep)
- HDstrcat(full_path, "/");
- HDstrcat(full_path, name);
+ HDstrncat(full_path, "/", 1);
+ HDstrncat(full_path, name, name_len);
/* Create reference counted string for path */
- if((ret_value = H5RS_own(full_path)) == NULL)
+ if(NULL == (ret_value = H5RS_own(full_path)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
done:
@@ -423,7 +426,7 @@ H5G_build_fullpath_refstr_refstr(const H5RS_str_t *prefix_r, const H5RS_str_t *n
herr_t
H5G__name_init(H5G_name_t *name, const char *path)
{
- FUNC_ENTER_PACKAGE
+ FUNC_ENTER_PACKAGE_NOERR
/* Check arguments */
HDassert(name);
@@ -717,6 +720,7 @@ H5G_name_move_path(H5RS_str_t **path_r_ptr, const char *full_suffix, const char
path_len = HDstrlen(path);
if(full_suffix_len < path_len) {
const char *dst_suffix; /* Destination suffix that changes */
+ size_t dst_suffix_len; /* Length of destination suffix */
const char *src_suffix; /* Source suffix that changes */
size_t path_prefix_len; /* Length of path prefix */
const char *path_prefix2; /* 2nd prefix for path */
@@ -747,25 +751,26 @@ H5G_name_move_path(H5RS_str_t **path_r_ptr, const char *full_suffix, const char
/* Determine destination suffix */
dst_suffix = dst_path + (common_prefix_len - 1);
+ dst_suffix_len = HDstrlen(dst_suffix);
/* Compute path prefix before src suffix*/
path_prefix2 = path;
path_prefix2_len = path_prefix_len - HDstrlen(src_suffix);
/* Allocate space for the new path */
- new_path_len = path_prefix2_len + HDstrlen(dst_suffix) + full_suffix_len;
+ new_path_len = path_prefix2_len + dst_suffix_len + full_suffix_len;
if(NULL == (new_path = (char *)H5FL_BLK_MALLOC(str_buf, new_path_len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Create the new path */
if(path_prefix2_len > 0) {
HDstrncpy(new_path, path_prefix2, path_prefix2_len);
- HDstrcpy(new_path + path_prefix2_len, dst_suffix);
+ HDstrncpy(new_path + path_prefix2_len, dst_suffix, dst_suffix_len + 1);
} /* end if */
else
- HDstrcpy(new_path, dst_suffix);
+ HDstrncpy(new_path, dst_suffix, dst_suffix_len + 1);
if(full_suffix_len > 0)
- HDstrcat(new_path, full_suffix);
+ HDstrncat(new_path, full_suffix, full_suffix_len);
/* Release previous path */
H5RS_decr(*path_r_ptr);
@@ -887,23 +892,25 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
if(obj_in_child) {
const char *full_path; /* Full path of current object */
const char *src_path; /* Full path of source object */
+ size_t src_path_len; /* Length of source full path */
char *new_full_path; /* New full path of object */
size_t new_full_len; /* Length of new full path */
/* Get pointers to paths of interest */
full_path = H5RS_get_str(obj_path->full_path_r);
src_path = H5RS_get_str(names->src_full_path_r);
+ src_path_len = HDstrlen(src_path);
/* Build new full path */
/* Allocate space for the new full path */
- new_full_len = HDstrlen(src_path) + HDstrlen(full_path);
+ new_full_len = src_path_len + HDstrlen(full_path);
if(NULL == (new_full_path = (char *)H5FL_BLK_MALLOC(str_buf, new_full_len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Create the new full path */
- HDstrcpy(new_full_path, src_path);
- HDstrcat(new_full_path, full_path);
+ HDstrncpy(new_full_path, src_path, src_path_len + 1);
+ HDstrncat(new_full_path, full_path, new_full_len);
/* Release previous full path */
H5RS_decr(obj_path->full_path_r);
@@ -931,6 +938,7 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
if(obj_in_child) {
const char *full_path; /* Full path of current object */
const char *full_suffix; /* Full path after source path */
+ size_t full_suffix_len; /* Length of full path after source path */
const char *src_path; /* Full path of source object */
char *new_full_path; /* New full path of object */
@@ -940,13 +948,14 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
/* Construct full path suffix */
full_suffix = full_path + HDstrlen(src_path);
+ full_suffix_len = HDstrlen(full_suffix);
/* Build new full path */
/* Create the new full path */
- if(NULL == (new_full_path = (char *)H5FL_BLK_MALLOC(str_buf, HDstrlen(full_suffix) + 1)))
+ if(NULL == (new_full_path = (char *)H5FL_BLK_MALLOC(str_buf, full_suffix_len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
- HDstrcpy(new_full_path, full_suffix);
+ HDstrncpy(new_full_path, full_suffix, full_suffix_len + 1);
/* Release previous full path */
H5RS_decr(obj_path->full_path_r);
@@ -992,10 +1001,12 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
if(H5G_common_path(obj_path->full_path_r, names->src_full_path_r)) {
const char *full_path; /* Full path of current object */
const char *full_suffix; /* Suffix of full path, after src_path */
+ size_t full_suffix_len; /* Length of suffix of full path after src_path*/
char *new_full_path; /* New full path of object */
size_t new_full_len; /* Length of new full path */
const char *src_path; /* Full path of source object */
const char *dst_path; /* Full path of destination object */
+ size_t dst_path_len; /* Length of destination's full path */
/* Sanity check */
HDassert(names->dst_full_path_r);
@@ -1004,6 +1015,7 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
full_path = H5RS_get_str(obj_path->full_path_r);
src_path = H5RS_get_str(names->src_full_path_r);
dst_path = H5RS_get_str(names->dst_full_path_r);
+ dst_path_len = HDstrlen(dst_path);
/* Make certain that the source and destination names are full (not relative) paths */
HDassert(*src_path == '/');
@@ -1011,6 +1023,7 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
/* Get pointer to "full suffix" */
full_suffix = full_path + HDstrlen(src_path);
+ full_suffix_len = HDstrlen(full_suffix);
/* Update the user path, if one exists */
if(obj_path->user_path_r)
@@ -1020,13 +1033,13 @@ H5G_name_replace_cb(void *obj_ptr, hid_t obj_id, void *key)
/* Build new full path */
/* Allocate space for the new full path */
- new_full_len = HDstrlen(dst_path) + HDstrlen(full_suffix);
+ new_full_len = dst_path_len + full_suffix_len;
if(NULL == (new_full_path = (char *)H5FL_BLK_MALLOC(str_buf, new_full_len + 1)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Create the new full path */
- HDstrcpy(new_full_path, dst_path);
- HDstrcat(new_full_path, full_suffix);
+ HDstrncpy(new_full_path, dst_path, dst_path_len + 1);
+ HDstrncat(new_full_path, full_suffix, full_suffix_len);
/* Release previous full path */
H5RS_decr(obj_path->full_path_r);
@@ -1318,7 +1331,7 @@ H5G_get_name_by_addr(hid_t file, hid_t lapl_id, hid_t dxpl_id, const H5O_loc_t *
/* If there's a buffer provided, copy into it, up to the limit of its size */
if(name) {
/* Copy the initial path separator */
- HDstrcpy(name, "/");
+ HDstrncpy(name, "/", 2);
/* Append the rest of the path */
/* (less one character, for the initial path separator) */
diff --git a/src/H5system.c b/src/H5system.c
index c0baee1..83cecba 100644
--- a/src/H5system.c
+++ b/src/H5system.c
@@ -122,24 +122,24 @@ HDfprintf(FILE *stream, const char *fmt, ...)
va_start (ap, fmt);
while (*fmt) {
- fwidth = prec = 0;
- zerofill = 0;
- leftjust = 0;
- plussign = 0;
- prefix = 0;
- ldspace = 0;
- modifier[0] = '\0';
-
- if ('%'==fmt[0] && '%'==fmt[1]) {
- HDputc ('%', stream);
- fmt += 2;
- nout++;
- } else if ('%'==fmt[0]) {
- s = fmt + 1;
-
- /* Flags */
- while(HDstrchr ("-+ #", *s)) {
- switch(*s) {
+ fwidth = prec = 0;
+ zerofill = 0;
+ leftjust = 0;
+ plussign = 0;
+ prefix = 0;
+ ldspace = 0;
+ modifier[0] = '\0';
+
+ if ('%'==fmt[0] && '%'==fmt[1]) {
+ HDputc ('%', stream);
+ fmt += 2;
+ nout++;
+ } else if ('%'==fmt[0]) {
+ s = fmt + 1;
+
+ /* Flags */
+ while(HDstrchr ("-+ #", *s)) {
+ switch(*s) {
case '-':
leftjust = 1;
break;
@@ -155,244 +155,251 @@ HDfprintf(FILE *stream, const char *fmt, ...)
case '#':
prefix = 1;
break;
- } /* end switch */ /*lint !e744 Switch statement doesn't _need_ default */
- s++;
- } /* end while */
-
- /* Field width */
- if (HDisdigit (*s)) {
- zerofill = ('0'==*s);
- fwidth = (int)HDstrtol (s, &rest, 10);
- s = rest;
- } else if ('*'==*s) {
- fwidth = va_arg (ap, int);
- if (fwidth<0) {
- leftjust = 1;
- fwidth = -fwidth;
- }
- s++;
- }
+ } /* end switch */ /*lint !e744 Switch statement doesn't _need_ default */
+ s++;
+ } /* end while */
+
+ /* Field width */
+ if(HDisdigit(*s)) {
+ zerofill = ('0' == *s);
+ fwidth = (int)HDstrtol (s, &rest, 10);
+ s = rest;
+ } /* end if */
+ else if ('*'==*s) {
+ fwidth = va_arg (ap, int);
+ if(fwidth < 0) {
+ leftjust = 1;
+ fwidth = -fwidth;
+ }
+ s++;
+ }
+
+ /* Precision */
+ if('.'==*s) {
+ s++;
+ if(HDisdigit(*s)) {
+ prec = (int)HDstrtol(s, &rest, 10);
+ s = rest;
+ } else if('*'==*s) {
+ prec = va_arg(ap, int);
+ s++;
+ }
+ if(prec < 1)
+ prec = 1;
+ }
+
+ /* Extra type modifiers */
+ if(HDstrchr("ZHhlqLI", *s)) {
+ switch(*s) {
+ /*lint --e{506} Don't issue warnings about constant value booleans */
+ /*lint --e{774} Don't issue warnings boolean within 'if' always evaluates false/true */
+ case 'H':
+ if(sizeof(hsize_t) < sizeof(long))
+ modifier[0] = '\0';
+ else if(sizeof(hsize_t) == sizeof(long))
+ HDstrncpy(modifier, "l", 2);
+ else
+ HDstrncpy(modifier, H5_PRINTF_LL_WIDTH, HDstrlen(H5_PRINTF_LL_WIDTH) + 1);
+ break;
- /* Precision */
- if ('.'==*s) {
- s++;
- if (HDisdigit (*s)) {
- prec = (int)HDstrtol (s, &rest, 10);
- s = rest;
- } else if ('*'==*s) {
- prec = va_arg (ap, int);
- s++;
- }
- if (prec<1) prec = 1;
- }
+ case 'Z':
+ if(sizeof(size_t) < sizeof(long))
+ modifier[0] = '\0';
+ else if(sizeof(size_t) == sizeof(long))
+ HDstrncpy(modifier, "l", 2);
+ else
+ HDstrncpy(modifier, H5_PRINTF_LL_WIDTH, HDstrlen(H5_PRINTF_LL_WIDTH) + 1);
+ break;
- /* Extra type modifiers */
- if (HDstrchr ("ZHhlqLI", *s)) {
- switch (*s) {
- /*lint --e{506} Don't issue warnings about constant value booleans */
- /*lint --e{774} Don't issue warnings boolean within 'if' always evaluates false/true */
- case 'H':
- if (sizeof(hsize_t)<sizeof(long)) {
- modifier[0] = '\0';
- } else if (sizeof(hsize_t)==sizeof(long)) {
- HDstrcpy (modifier, "l");
- } else {
- HDstrcpy (modifier, H5_PRINTF_LL_WIDTH);
- }
- break;
- case 'Z':
- if (sizeof(size_t)<sizeof(long)) {
- modifier[0] = '\0';
- } else if (sizeof(size_t)==sizeof(long)) {
- HDstrcpy (modifier, "l");
- } else {
- HDstrcpy (modifier, H5_PRINTF_LL_WIDTH);
- }
- break;
- default:
- /* Handle 'I64' modifier for Microsoft's "__int64" type */
- if(*s=='I' && *(s+1)=='6' && *(s+2)=='4') {
- modifier[0] = *s;
- modifier[1] = *(s+1);
- modifier[2] = *(s+2);
- modifier[3] = '\0';
- s+=2; /* Increment over 'I6', the '4' is taken care of below */
- } /* end if */
- else {
- /* Handle 'll' for long long types */
- if(*s=='l' && *(s+1)=='l') {
+ default:
+ /* Handle 'I64' modifier for Microsoft's "__int64" type */
+ if(*s=='I' && *(s+1)=='6' && *(s+2)=='4') {
modifier[0] = *s;
- modifier[1] = *s;
- modifier[2] = '\0';
- s++; /* Increment over first 'l', second is taken care of below */
+ modifier[1] = *(s+1);
+ modifier[2] = *(s+2);
+ modifier[3] = '\0';
+ s += 2; /* Increment over 'I6', the '4' is taken care of below */
} /* end if */
else {
- modifier[0] = *s;
- modifier[1] = '\0';
+ /* Handle 'll' for long long types */
+ if(*s=='l' && *(s+1)=='l') {
+ modifier[0] = *s;
+ modifier[1] = *s;
+ modifier[2] = '\0';
+ s++; /* Increment over first 'l', second is taken care of below */
+ } /* end if */
+ else {
+ modifier[0] = *s;
+ modifier[1] = '\0';
+ } /* end else */
} /* end else */
- } /* end else */
- break;
- }
- s++;
- }
-
- /* Conversion */
- conv = *s++;
-
- /* Create the format template */
- sprintf (format_templ, "%%%s%s%s%s%s",
- leftjust?"-":"", plussign?"+":"",
- ldspace?" ":"", prefix?"#":"", zerofill?"0":"");
- if (fwidth>0)
- sprintf (format_templ+HDstrlen(format_templ), "%d", fwidth);
- if (prec>0)
- sprintf (format_templ+HDstrlen(format_templ), ".%d", prec);
- if (*modifier)
- sprintf (format_templ+HDstrlen(format_templ), "%s", modifier);
- sprintf (format_templ+HDstrlen(format_templ), "%c", conv);
-
-
- /* Conversion */
- switch (conv) {
- case 'd':
- case 'i':
- if (!HDstrcmp(modifier, "h")) {
- short x = (short)va_arg (ap, int);
- n = fprintf (stream, format_templ, x);
- } else if (!*modifier) {
- int x = va_arg (ap, int);
- n = fprintf (stream, format_templ, x);
- } else if (!HDstrcmp (modifier, "l")) {
- long x = va_arg (ap, long);
- n = fprintf (stream, format_templ, x);
- } else {
- int64_t x = va_arg(ap, int64_t);
- n = fprintf (stream, format_templ, x);
- }
- break;
-
- case 'o':
- case 'u':
- case 'x':
- case 'X':
- if (!HDstrcmp (modifier, "h")) {
- unsigned short x = (unsigned short)va_arg (ap, unsigned int);
- n = fprintf (stream, format_templ, x);
- } else if (!*modifier) {
- unsigned int x = va_arg (ap, unsigned int); /*lint !e732 Loss of sign not really occuring */
- n = fprintf (stream, format_templ, x);
- } else if (!HDstrcmp (modifier, "l")) {
- unsigned long x = va_arg (ap, unsigned long); /*lint !e732 Loss of sign not really occuring */
- n = fprintf (stream, format_templ, x);
- } else {
- uint64_t x = va_arg(ap, uint64_t); /*lint !e732 Loss of sign not really occuring */
- n = fprintf (stream, format_templ, x);
- }
- break;
-
- case 'f':
- case 'e':
- case 'E':
- case 'g':
- case 'G':
- if (!HDstrcmp (modifier, "h")) {
- float x = (float) va_arg (ap, double);
- n = fprintf (stream, format_templ, x);
- } else if (!*modifier || !HDstrcmp (modifier, "l")) {
- double x = va_arg (ap, double);
- n = fprintf (stream, format_templ, x);
- } else {
- /*
- * Some compilers complain when `long double' and
- * `double' are the same thing.
- */
+ break;
+ }
+ s++;
+ }
+
+ /* Conversion */
+ conv = *s++;
+
+ /* Create the format template */
+ sprintf(format_templ, "%%%s%s%s%s%s", (leftjust ? "-" : ""),
+ (plussign ? "+" : ""), (ldspace ? " " : ""),
+ (prefix ? "#" : ""), (zerofill ? "0" : ""));
+ if(fwidth > 0)
+ sprintf(format_templ+HDstrlen(format_templ), "%d", fwidth);
+ if(prec > 0)
+ sprintf(format_templ+HDstrlen(format_templ), ".%d", prec);
+ if(*modifier)
+ sprintf(format_templ+HDstrlen(format_templ), "%s", modifier);
+ sprintf (format_templ+HDstrlen(format_templ), "%c", conv);
+
+
+ /* Conversion */
+ switch (conv) {
+ case 'd':
+ case 'i':
+ if(!HDstrcmp(modifier, "h")) {
+ short x = (short)va_arg (ap, int);
+ n = fprintf (stream, format_templ, x);
+ } else if(!*modifier) {
+ int x = va_arg (ap, int);
+ n = fprintf (stream, format_templ, x);
+ } else if(!HDstrcmp (modifier, "l")) {
+ long x = va_arg (ap, long);
+ n = fprintf (stream, format_templ, x);
+ } else {
+ int64_t x = va_arg(ap, int64_t);
+ n = fprintf (stream, format_templ, x);
+ }
+ break;
+
+ case 'o':
+ case 'u':
+ case 'x':
+ case 'X':
+ if(!HDstrcmp(modifier, "h")) {
+ unsigned short x = (unsigned short)va_arg (ap, unsigned int);
+ n = fprintf(stream, format_templ, x);
+ } else if(!*modifier) {
+ unsigned int x = va_arg (ap, unsigned int); /*lint !e732 Loss of sign not really occuring */
+ n = fprintf(stream, format_templ, x);
+ } else if(!HDstrcmp(modifier, "l")) {
+ unsigned long x = va_arg (ap, unsigned long); /*lint !e732 Loss of sign not really occuring */
+ n = fprintf(stream, format_templ, x);
+ } else {
+ uint64_t x = va_arg(ap, uint64_t); /*lint !e732 Loss of sign not really occuring */
+ n = fprintf(stream, format_templ, x);
+ }
+ break;
+
+ case 'f':
+ case 'e':
+ case 'E':
+ case 'g':
+ case 'G':
+ if(!HDstrcmp(modifier, "h")) {
+ float x = (float)va_arg(ap, double);
+ n = fprintf(stream, format_templ, x);
+ } else if(!*modifier || !HDstrcmp(modifier, "l")) {
+ double x = va_arg(ap, double);
+ n = fprintf(stream, format_templ, x);
+ } else {
+ /*
+ * Some compilers complain when `long double' and
+ * `double' are the same thing.
+ */
#if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE
- long double x = va_arg (ap, long double);
- n = fprintf (stream, format_templ, x);
+ long double x = va_arg(ap, long double);
+ n = fprintf(stream, format_templ, x);
#else
- double x = va_arg (ap, double);
- n = fprintf (stream, format_templ, x);
+ double x = va_arg(ap, double);
+ n = fprintf(stream, format_templ, x);
#endif
- }
- break;
-
- case 'a':
- {
- haddr_t x = va_arg (ap, haddr_t); /*lint !e732 Loss of sign not really occuring */
- if (H5F_addr_defined(x)) {
- sprintf(format_templ, "%%%s%s%s%s%s",
- leftjust?"-":"", plussign?"+":"",
- ldspace?" ":"", prefix?"#":"",
- zerofill?"0":"");
- if (fwidth>0)
- sprintf(format_templ+HDstrlen(format_templ), "%d", fwidth);
-
- /*lint --e{506} Don't issue warnings about constant value booleans */
- /*lint --e{774} Don't issue warnings boolean within 'if' always evaluates false/true */
- if (sizeof(x)==H5_SIZEOF_INT) {
- HDstrcat(format_templ, "u");
- } else if (sizeof(x)==H5_SIZEOF_LONG) {
- HDstrcat(format_templ, "lu");
- } else if (sizeof(x)==H5_SIZEOF_LONG_LONG) {
- HDstrcat(format_templ, H5_PRINTF_LL_WIDTH);
- HDstrcat(format_templ, "u");
- }
- n = fprintf(stream, format_templ, x);
+ }
+ break;
+
+ case 'a':
+ {
+ haddr_t x = va_arg (ap, haddr_t); /*lint !e732 Loss of sign not really occuring */
+
+ if(H5F_addr_defined(x)) {
+ sprintf(format_templ, "%%%s%s%s%s%s",
+ (leftjust ? "-" : ""), (plussign ? "+" : ""),
+ (ldspace ? " " : ""), (prefix ? "#" : ""),
+ (zerofill ? "0" : ""));
+ if(fwidth > 0)
+ sprintf(format_templ + HDstrlen(format_templ), "%d", fwidth);
+
+ /*lint --e{506} Don't issue warnings about constant value booleans */
+ /*lint --e{774} Don't issue warnings boolean within 'if' always evaluates false/true */
+ if(sizeof(x) == H5_SIZEOF_INT)
+ HDstrcat(format_templ, "u");
+ else if(sizeof(x) == H5_SIZEOF_LONG)
+ HDstrcat(format_templ, "lu");
+ else if(sizeof(x) == H5_SIZEOF_LONG_LONG) {
+ HDstrcat(format_templ, H5_PRINTF_LL_WIDTH);
+ HDstrcat(format_templ, "u");
+ }
+ n = fprintf(stream, format_templ, x);
+ } else {
+ HDstrcpy(format_templ, "%");
+ if(leftjust)
+ HDstrcat(format_templ, "-");
+ if(fwidth)
+ sprintf(format_templ+HDstrlen(format_templ), "%d", fwidth);
+ HDstrcat(format_templ, "s");
+ fprintf(stream, format_templ, "UNDEF");
+ }
+ }
+ break;
+
+ case 'c':
+ {
+ char x = (char)va_arg(ap, int);
+ n = fprintf(stream, format_templ, x);
+ }
+ break;
+
+ case 's':
+ case 'p':
+ {
+ char *x = va_arg(ap, char*); /*lint !e64 Type mismatch not really occuring */
+ n = fprintf(stream, format_templ, x);
+ }
+ break;
+
+ case 'n':
+ format_templ[HDstrlen(format_templ) - 1] = 'u';
+ n = fprintf(stream, format_templ, nout);
+ break;
+
+ case 't':
+ {
+ htri_t tri_var = va_arg(ap, htri_t);
+
+ if(tri_var > 0)
+ fprintf (stream, "TRUE");
+ else if(!tri_var)
+ fprintf(stream, "FALSE");
+ else
+ fprintf(stream, "FAIL(%d)", (int)tri_var);
+ }
+ break;
+
+ default:
+ HDfputs(format_templ, stream);
+ n = (int)HDstrlen(format_templ);
+ break;
+ }
+ nout += n;
+ fmt = s;
} else {
- HDstrcpy(format_templ, "%");
- if (leftjust)
- HDstrcat(format_templ, "-");
- if (fwidth)
- sprintf(format_templ+HDstrlen(format_templ), "%d", fwidth);
- HDstrcat(format_templ, "s");
- fprintf(stream, format_templ, "UNDEF");
+ HDputc(*fmt, stream);
+ fmt++;
+ nout++;
}
}
- break;
-
- case 'c':
- {
- char x = (char)va_arg (ap, int);
- n = fprintf (stream, format_templ, x);
- }
- break;
-
- case 's':
- case 'p':
- {
- char *x = va_arg (ap, char*); /*lint !e64 Type mismatch not really occuring */
- n = fprintf (stream, format_templ, x);
- }
- break;
-
- case 'n':
- format_templ[HDstrlen(format_templ)-1] = 'u';
- n = fprintf (stream, format_templ, nout);
- break;
-
- case 't':
- {
- htri_t tri_var = va_arg (ap, htri_t);
- if (tri_var > 0) fprintf (stream, "TRUE");
- else if (!tri_var) fprintf (stream, "FALSE");
- else fprintf (stream, "FAIL(%d)", (int)tri_var);
- }
- break;
-
- default:
- HDfputs (format_templ, stream);
- n = (int)HDstrlen (format_templ);
- break;
- }
- nout += n;
- fmt = s;
- } else {
- HDputc (*fmt, stream);
- fmt++;
- nout++;
- }
- }
- va_end (ap);
+ va_end(ap);
return nout;
} /* end HDfprintf() */
@@ -713,23 +720,23 @@ H5_build_extpath(const char *name, char **extpath/*out*/)
if(NULL == (new_name = (char *)H5MM_strdup(name)))
HGOTO_ERROR(H5E_INTERNAL, H5E_NOSPACE, FAIL, "memory allocation failed")
- /*
- * Windows: name[0-1] is "<drive-letter>:"
- * Get current working directory on the drive specified in NAME
- * Unix: does not apply
+ /*
+ * Windows: name[0-1] is "<drive-letter>:"
+ * Get current working directory on the drive specified in NAME
+ * Unix: does not apply
* OpenVMS: does not apply
- */
+ */
if(CHECK_ABS_DRIVE(name)) {
drive = name[0] - 'A' + 1;
retcwd = HDgetdcwd(drive, cwdpath, MAX_PATH_LEN);
HDstrcpy(new_name, &name[2]);
} /* end if */
- /*
- * Windows: name[0] is a '/' or '\'
- * Get current drive
- * Unix: does not apply
- * OpenVMS: does not apply
- */
+ /*
+ * Windows: name[0] is a '/' or '\'
+ * Get current drive
+ * Unix: does not apply
+ * OpenVMS: does not apply
+ */
else if(CHECK_ABS_PATH(name) && (0 != (drive = HDgetdrive()))) {
sprintf(cwdpath, "%c:%c", (drive+'A'-1), name[0]);
retcwd = cwdpath;
@@ -749,7 +756,7 @@ H5_build_extpath(const char *name, char **extpath/*out*/)
if(NULL == (full_path = (char *)H5MM_malloc(path_len)))
HGOTO_ERROR(H5E_INTERNAL, H5E_NOSPACE, FAIL, "memory allocation failed")
- HDstrcpy(full_path, cwdpath);
+ HDstrncpy(full_path, cwdpath, cwdlen + 1);
#ifdef H5_VMS
/* If the file name contains relative path, cut off the beginning bracket. Also cut off the
* ending bracket of CWDPATH to combine the full path name. i.g.
@@ -759,15 +766,16 @@ H5_build_extpath(const char *name, char **extpath/*out*/)
*/
if(new_name[0] == '[') {
char *tmp = new_name;
+
full_path[cwdlen - 1] = '\0';
HDstrcat(full_path, ++tmp);
} /* end if */
else
- HDstrcat(full_path, new_name);
+ HDstrncat(full_path, new_name, HDstrlen(new_name));
#else
if(!CHECK_DELIMITER(cwdpath[cwdlen - 1]))
- HDstrcat(full_path, DIR_SEPS);
- HDstrcat(full_path, new_name);
+ HDstrncat(full_path, DIR_SEPS, HDstrlen(DIR_SEPS));
+ HDstrncat(full_path, new_name, HDstrlen(new_name));
#endif
} /* end if */
} /* end else */
diff --git a/test/accum.c b/test/accum.c
index e4c1bd8..488b866 100644
--- a/test/accum.c
+++ b/test/accum.c
@@ -470,8 +470,11 @@ test_free(void)
if(HDmemcmp(expect + 76, rbuf, 116 * sizeof(int32_t)) != 0) TEST_ERROR;
HDfree(wbuf);
+ wbuf = NULL;
HDfree(rbuf);
+ rbuf = NULL;
HDfree(expect);
+ expect = NULL;
if(accum_reset() < 0) FAIL_STACK_ERROR;
@@ -480,9 +483,12 @@ test_free(void)
return 0;
error:
- HDfree(wbuf);
- HDfree(rbuf);
- HDfree(expect);
+ if(wbuf)
+ HDfree(wbuf);
+ if(rbuf)
+ HDfree(rbuf);
+ if(expect)
+ HDfree(expect);
return 1;
} /* test_free */
@@ -1646,7 +1652,7 @@ unsigned
test_random_write(void)
{
uint8_t *wbuf, *rbuf; /* Buffers for reading & writing */
- unsigned long seed = 0; /* Random # seed */
+ unsigned seed = 0; /* Random # seed */
size_t *off; /* Offset of buffer segments to write */
size_t *len; /* Size of buffer segments to write */
size_t cur_off; /* Current offset */
@@ -1667,10 +1673,10 @@ test_random_write(void)
TESTING("random writes to accumulator");
/* Choose random # seed */
- seed = (unsigned long)HDtime(NULL);
+ seed = (unsigned)HDtime(NULL);
#ifdef QAK
-/* seed = (unsigned long)1155438845; */
-HDfprintf(stderr, "Random # seed was: %lu\n", seed);
+/* seed = (unsigned)1155438845; */
+HDfprintf(stderr, "Random # seed was: %u\n", seed);
#endif /* QAK */
HDsrandom(seed);
@@ -1762,7 +1768,7 @@ error:
HDfree(off);
HDfree(len);
- HDfprintf(stderr, "Random # seed was: %lu\n", seed);
+ HDfprintf(stderr, "Random # seed was: %u\n", seed);
return 1;
} /* end test_random_write() */
diff --git a/test/stab.c b/test/stab.c
index a42ee5e..48b58b1 100644
--- a/test/stab.c
+++ b/test/stab.c
@@ -539,7 +539,7 @@ long_compact(hid_t fapl2)
hid_t fid = (-1); /* File ID */
hid_t gid = (-1); /* Group ID */
hid_t gid2 = (-1); /* Group ID */
- char *objname; /* Object name */
+ char *objname = NULL; /* Object name */
char filename[NAME_BUF_SIZE];
h5_stat_size_t empty_size; /* Size of an empty file */
h5_stat_size_t file_size; /* Size of each file created */
@@ -557,7 +557,7 @@ long_compact(hid_t fapl2)
if((empty_size = h5_get_file_size(filename, fapl2)) < 0) TEST_ERROR
/* Construct very long object name template */
- if((objname = (char *)HDmalloc((size_t)(LONG_COMPACT_LENGTH + 1))) == NULL) TEST_ERROR
+ if(NULL == (objname = (char *)HDmalloc((size_t)(LONG_COMPACT_LENGTH + 1)))) TEST_ERROR
HDmemset(objname, 'a', (size_t)LONG_COMPACT_LENGTH);
objname[LONG_COMPACT_LENGTH] = '\0';
@@ -620,6 +620,7 @@ long_compact(hid_t fapl2)
/* Free object name */
HDfree(objname);
+ objname = NULL;
/* Close top group */
if(H5Gclose(gid) < 0) TEST_ERROR
@@ -645,6 +646,10 @@ error:
H5Gclose(gid);
H5Fclose(fid);
} H5E_END_TRY;
+
+ if(objname)
+ HDfree(objname);
+
return 1;
} /* end long_compact() */
diff --git a/test/vfd.c b/test/vfd.c
index ca354d9..b85c054 100644
--- a/test/vfd.c
+++ b/test/vfd.c
@@ -28,17 +28,20 @@
#define FAMILY_SIZE2 (5*KB)
#define MULTI_SIZE 128
#define CORE_INCREMENT (4*KB)
+#define DSET1_NAME "dset1"
+#define DSET1_DIM1 1024
+#define DSET1_DIM2 32
+#define DSET3_NAME "dset3"
-/*Macros for Direct VFD*/
+/* Macros for Direct VFD */
+#ifdef H5_HAVE_DIRECT
#define MBOUNDARY 512
#define FBSIZE (4*KB)
#define CBSIZE (8*KB)
#define THRESHOLD 1
-#define DSET1_NAME "dset1"
-#define DSET1_DIM1 1024
-#define DSET1_DIM2 32
#define DSET2_NAME "dset2"
#define DSET2_DIM 4
+#endif /* H5_HAVE_DIRECT */
const char *FILENAME[] = {
"sec2_file", /*0*/
@@ -165,7 +168,7 @@ test_direct(void)
size_t mbound;
size_t fbsize;
size_t cbsize;
- int *points, *check, *p1, *p2;
+ int *points = NULL, *check = NULL, *p1, *p2;
int wdata2[DSET2_DIM] = {11,12,13,14};
int rdata2[DSET2_DIM];
int i, j, n;
@@ -189,10 +192,10 @@ test_direct(void)
if(H5Pget_fapl_direct(fapl, &mbound, &fbsize, &cbsize) < 0)
TEST_ERROR;
if(mbound != MBOUNDARY || fbsize != FBSIZE || cbsize != CBSIZE)
- TEST_ERROR;
+ TEST_ERROR;
if(H5Pset_alignment(fapl, (hsize_t)THRESHOLD, (hsize_t)FBSIZE) < 0)
- TEST_ERROR;
+ TEST_ERROR;
H5E_BEGIN_TRY {
file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
@@ -235,17 +238,16 @@ test_direct(void)
/* Allocate aligned memory for data set 1. For data set 1, everything is aligned including
* memory address, size of data, and file address. */
- if(posix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
+ if(0 != HDposix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
-
- if(posix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1*DSET1_DIM2*sizeof(int)))!=0)
+ if(0 != HDposix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
/* Initialize the dset1 */
p1 = points;
for(i = n = 0; i < DSET1_DIM1; i++)
- for(j = 0; j < DSET1_DIM2; j++)
- *p1++ = n++;
+ for(j = 0; j < DSET1_DIM2; j++)
+ *p1++ = n++;
/* Create the data space1 */
dims1[0] = DSET1_DIM1;
@@ -275,13 +277,13 @@ test_direct(void)
p1 = points;
p2 = check;
for(i = 0; i < DSET1_DIM1; i++)
- for(j = 0; j < DSET1_DIM2; j++)
- if(*p1++ != *p2++) {
- H5_FAILED();
- printf(" Read different values than written in data set 1.\n");
- printf(" At index %d,%d\n", i, j);
- TEST_ERROR;
- } /* end if */
+ for(j = 0; j < DSET1_DIM2; j++)
+ if(*p1++ != *p2++) {
+ H5_FAILED();
+ printf(" Read different values than written in data set 1.\n");
+ printf(" At index %d,%d\n", i, j);
+ TEST_ERROR;
+ } /* end if */
/* Create the data space2. For data set 2, memory address and data size are not aligned. */
dims2[0] = DSET2_DIM;
@@ -308,12 +310,12 @@ test_direct(void)
/* Check that the values read are the same as the values written */
for(i = 0; i < DSET2_DIM; i++)
- if(wdata2[i] != rdata2[i]) {
- H5_FAILED();
- printf(" Read different values than written in data set 2.\n");
- printf(" At index %d\n", i);
+ if(wdata2[i] != rdata2[i]) {
+ H5_FAILED();
+ printf(" Read different values than written in data set 2.\n");
+ printf(" At index %d\n", i);
TEST_ERROR;
- } /* end if */
+ } /* end if */
if(H5Sclose(space1) < 0)
TEST_ERROR;
@@ -325,10 +327,10 @@ test_direct(void)
TEST_ERROR;
if(H5Fclose(file) < 0)
TEST_ERROR;
- if(points)
- free(points);
- if(check)
- free(check);
+ HDassert(points);
+ HDfree(points);
+ HDassert(check);
+ HDfree(check);
h5_cleanup(FILENAME, fapl);
PASSED();
@@ -336,13 +338,19 @@ test_direct(void)
error:
H5E_BEGIN_TRY {
- H5Pclose (fapl);
+ H5Pclose(fapl);
H5Sclose(space1);
H5Dclose(dset1);
H5Sclose(space2);
H5Dclose(dset2);
H5Fclose(file);
} H5E_END_TRY;
+
+ if(points)
+ HDfree(points);
+ if(check)
+ HDfree(check);
+
return -1;
#endif /*H5_HAVE_DIRECT*/
}
@@ -368,7 +376,7 @@ test_core(void)
char filename[1024];
void *fhandle=NULL;
hsize_t file_size;
- int *points, *check, *p1, *p2;
+ int *points = NULL, *check = NULL, *p1, *p2;
hid_t dset1=-1, space1=-1;
hsize_t dims1[2];
int i, j, n;
@@ -427,14 +435,16 @@ test_core(void)
TEST_ERROR;
/* Allocate memory for data set. */
- points=(int*)malloc(DSET1_DIM1*DSET1_DIM2*sizeof(int));
- check=(int*)malloc(DSET1_DIM1*DSET1_DIM2*sizeof(int));
+ if(NULL == (points = (int *)HDmalloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
+ TEST_ERROR;
+ if(NULL == (check = (int *)HDmalloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
+ TEST_ERROR;
/* Initialize the dset1 */
p1 = points;
for(i = n = 0; i < DSET1_DIM1; i++)
- for(j = 0; j < DSET1_DIM2; j++)
- *p1++ = n++;
+ for(j = 0; j < DSET1_DIM2; j++)
+ *p1++ = n++;
/* Create the data space1 */
dims1[0] = DSET1_DIM1;
@@ -464,13 +474,13 @@ test_core(void)
p1 = points;
p2 = check;
for(i = 0; i < DSET1_DIM1; i++)
- for(j = 0; j < DSET1_DIM2; j++)
- if(*p1++ != *p2++) {
- H5_FAILED();
- printf(" Read different values than written in data set 1.\n");
- printf(" At index %d,%d\n", i, j);
- TEST_ERROR;
- } /* end if */
+ for(j = 0; j < DSET1_DIM2; j++)
+ if(*p1++ != *p2++) {
+ H5_FAILED();
+ printf(" Read different values than written in data set 1.\n");
+ printf(" At index %d,%d\n", i, j);
+ TEST_ERROR;
+ } /* end if */
if(H5Dclose(dset1) < 0)
TEST_ERROR;
@@ -501,10 +511,10 @@ test_core(void)
TEST_ERROR;
/* Reallocate memory for reading buffer. */
- if(check)
- free(check);
-
- check = (int*)malloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int));
+ HDassert(check);
+ HDfree(check);
+ if(NULL == (check = (int *)HDmalloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
+ TEST_ERROR;
/* Read the data back from dset1 */
if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
@@ -514,13 +524,13 @@ test_core(void)
p1 = points;
p2 = check;
for(i = 0; i < DSET1_DIM1; i++)
- for(j = 0; j < DSET1_DIM2; j++)
- if(*p1++ != *p2++) {
- H5_FAILED();
- printf(" Read different values than written in data set 1.\n");
- printf(" At index %d,%d\n", i, j);
- TEST_ERROR;
- } /* end if */
+ for(j = 0; j < DSET1_DIM2; j++)
+ if(*p1++ != *p2++) {
+ H5_FAILED();
+ printf(" Read different values than written in data set 1.\n");
+ printf(" At index %d,%d\n", i, j);
+ TEST_ERROR;
+ } /* end if */
/* Check file size API */
if(H5Fget_filesize(file, &file_size) < 0)
@@ -537,10 +547,10 @@ test_core(void)
TEST_ERROR;
if(H5Fclose(file) < 0)
TEST_ERROR;
- if(points)
- free(points);
- if(check)
- free(check);
+ HDassert(points);
+ HDfree(points);
+ HDassert(check);
+ HDfree(check);
h5_cleanup(FILENAME, fapl);
@@ -549,9 +559,15 @@ test_core(void)
error:
H5E_BEGIN_TRY {
- H5Pclose (fapl);
+ H5Pclose(fapl);
H5Fclose(file);
} H5E_END_TRY;
+
+ if(points)
+ HDfree(points);
+ if(check)
+ HDfree(check);
+
return -1;
}
@@ -579,27 +595,30 @@ test_family_opens(char *fname, hid_t fa_pl)
int i;
/* Case 1: reopen file with 1st member file name and default property list */
- sprintf(first_name, fname, 0);
+ HDsnprintf(first_name, sizeof(first_name), fname, 0);
H5E_BEGIN_TRY {
- file=H5Fopen(first_name, H5F_ACC_RDWR, H5P_DEFAULT);
+ file = H5Fopen(first_name, H5F_ACC_RDWR, H5P_DEFAULT);
} H5E_END_TRY;
- if(file >= 0) TEST_ERROR
+ if(file >= 0)
+ TEST_ERROR
/* Case 2: reopen file with correct name template but default property list */
H5E_BEGIN_TRY {
- file=H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT);
+ file = H5Fopen(fname, H5F_ACC_RDWR, H5P_DEFAULT);
} H5E_END_TRY;
- if(file >= 0) TEST_ERROR
+ if(file >= 0)
+ TEST_ERROR
/* Case 3: reopen file with wrong member size */
if(H5Pset_fapl_family(fa_pl, (hsize_t)128, H5P_DEFAULT) < 0)
TEST_ERROR;
H5E_BEGIN_TRY {
- file=H5Fopen(fname, H5F_ACC_RDWR, fa_pl);
+ file = H5Fopen(fname, H5F_ACC_RDWR, fa_pl);
} H5E_END_TRY;
- if(file >= 0) TEST_ERROR
+ if(file >= 0)
+ TEST_ERROR
/* Case 4: reopen file with wrong name template */
HDstrcpy(wrong_name, fname);
@@ -613,9 +632,10 @@ test_family_opens(char *fname, hid_t fa_pl)
TEST_ERROR;
H5E_BEGIN_TRY {
- file=H5Fopen(wrong_name, H5F_ACC_RDWR, fa_pl);
+ file = H5Fopen(wrong_name, H5F_ACC_RDWR, fa_pl);
} H5E_END_TRY;
- if(file >= 0) TEST_ERROR
+ if(file >= 0)
+ TEST_ERROR
return 0;
@@ -704,44 +724,44 @@ test_family(void)
if((dset=H5Dcreate2(file, dname, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
- for(i=0; i<FAMILY_NUMBER; i++)
- for(j=0; j<FAMILY_SIZE; j++)
- buf[i][j] = i*10000+j;
+ for(i = 0; i < FAMILY_NUMBER; i++)
+ for(j = 0; j < FAMILY_SIZE; j++)
+ buf[i][j] = (int)((i * 10000) + j);
if(H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0)
TEST_ERROR;
/* check file handle API */
- if((fapl2=H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ if((fapl2 = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if(H5Pset_family_offset(fapl2, (hsize_t)0) < 0)
TEST_ERROR;
if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle) < 0)
TEST_ERROR;
- if(*fhandle<0)
+ if(*fhandle < 0)
TEST_ERROR;
if(H5Pset_family_offset(fapl2, (hsize_t)(FAMILY_SIZE*2)) < 0)
TEST_ERROR;
if(H5Fget_vfd_handle(file, fapl2, (void **)&fhandle2) < 0)
TEST_ERROR;
- if(*fhandle2<0)
+ if(*fhandle2 < 0)
TEST_ERROR;
/* Check file size API */
if(H5Fget_filesize(file, &file_size) < 0)
TEST_ERROR;
- /* Some data has been written. The file size should be bigger(18KB+976
+ /* Some data has been written. The file size should be bigger (18KB+976)
* bytes if int size is 4 bytes) now. */
- if(sizeof(int)<=4) {
- if(file_size<18*KB || file_size>20*KB)
- TEST_ERROR;
- } else if(sizeof(int)>=8) {
- if(file_size<32*KB || file_size>40*KB)
- TEST_ERROR;
- }
+#if H5_SIZEOF_INT <= 4
+ if(file_size < (18 * KB) || file_size > (20 * KB))
+ TEST_ERROR;
+#elif H5_SIZEOF_INT >= 8
+ if(file_size < (32 * KB) || file_size > (40 * KB))
+ TEST_ERROR;
+#endif
if(H5Sclose(space) < 0)
TEST_ERROR;
@@ -761,7 +781,7 @@ test_family(void)
if(H5Pset_fapl_family(fapl, (hsize_t)FAMILY_SIZE, H5P_DEFAULT) < 0)
TEST_ERROR;
- if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
+ if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
TEST_ERROR;
if(H5Fclose(file) < 0)
@@ -829,13 +849,13 @@ test_family_compat(void)
* Since we're going to open the files with write mode, this protects the original
* files.
*/
- sprintf(newname_individual, newname, counter);
- sprintf(pathname_individual, pathname, counter);
+ HDsnprintf(newname_individual, sizeof(newname_individual), newname, counter);
+ HDsnprintf(pathname_individual, sizeof(pathname_individual), pathname, counter);
- while (h5_make_local_copy(pathname_individual, newname_individual) >= 0) {
+ while(h5_make_local_copy(pathname_individual, newname_individual) >= 0) {
counter++;
- sprintf(newname_individual, newname, counter);
- sprintf(pathname_individual, pathname, counter);
+ HDsnprintf(newname_individual, sizeof(newname_individual), newname, counter);
+ HDsnprintf(pathname_individual, sizeof(pathname_individual), pathname, counter);
}
/* Make sure we can open the file. Use the read and write mode to flush the
@@ -888,7 +908,7 @@ error:
* reopening multi file.
*
* Return: Success: 0
- * Failure: 1
+ * Failure: -1
*
* Programmer: Raymond Lu
* Thursday, May 19, 2005
@@ -903,14 +923,14 @@ test_multi_opens(char *fname)
char sf_name[1024]; /*name string "multi_file-s.h5"*/
/* Case: reopen with the name of super file and default property list */
- sprintf(super_name, "%%s-%c.h5", 's');
- sprintf(sf_name, super_name, fname);
+ HDsnprintf(super_name, sizeof(super_name), "%%s-%c.h5", 's');
+ HDsnprintf(sf_name, sizeof(sf_name), super_name, fname);
H5E_BEGIN_TRY {
- file=H5Fopen(sf_name, H5F_ACC_RDWR, H5P_DEFAULT);
+ file = H5Fopen(sf_name, H5F_ACC_RDWR, H5P_DEFAULT);
} H5E_END_TRY;
- return 0;
+ return(file >= 0 ? -1 : 0);
}
@@ -999,11 +1019,11 @@ test_multi(void)
TEST_ERROR;
/* Reopen the file */
- if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
+ if((file = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
TEST_ERROR;
/* Create and write data set */
- if((space=H5Screate_simple(2, dims, NULL)) < 0)
+ if((space = H5Screate_simple(2, dims, NULL)) < 0)
TEST_ERROR;
/* Retrieve the access property list... */
@@ -1146,19 +1166,16 @@ error:
static herr_t
test_multi_compat(void)
{
- hid_t file=(-1), fapl, fapl2=(-1), dset=(-1), space=(-1);
- hid_t access_fapl = -1;
+ hid_t file=(-1), fapl, dset=(-1), space=(-1);
char newname[1024];
char filename_s[1024], newname_s[1024];
char filename_r[1024], newname_r[1024];
- int *fhandle2=NULL, *fhandle=NULL;
H5FD_mem_t mt, memb_map[H5FD_MEM_NTYPES];
hid_t memb_fapl[H5FD_MEM_NTYPES];
haddr_t memb_addr[H5FD_MEM_NTYPES];
const char *memb_name[H5FD_MEM_NTYPES];
char sv[H5FD_MEM_NTYPES][32];
hsize_t dims[2]={MULTI_SIZE, MULTI_SIZE};
- char dname[]="dataset2";
int i, j;
int buf[MULTI_SIZE][MULTI_SIZE];
@@ -1238,7 +1255,7 @@ test_multi_compat(void)
if((space=H5Screate_simple(2, dims, NULL)) < 0)
TEST_ERROR;
- if((dset=H5Dcreate2(file, DSET2_NAME, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ if((dset=H5Dcreate2(file, DSET3_NAME, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
for(i=0; i<MULTI_SIZE; i++)
@@ -1267,7 +1284,7 @@ test_multi_compat(void)
if(H5Dclose(dset) < 0)
TEST_ERROR;
- if((dset = H5Dopen2(file, DSET2_NAME, H5P_DEFAULT)) < 0)
+ if((dset = H5Dopen2(file, DSET3_NAME, H5P_DEFAULT)) < 0)
TEST_ERROR;
if(H5Dclose(dset) < 0)
@@ -1315,13 +1332,13 @@ test_log(void)
int *fhandle = NULL;
hsize_t file_size = 0;
unsigned int flags = H5FD_LOG_ALL;
- size_t buf_size = 0;
+ size_t buf_size = 4 * KB;
TESTING("LOG file driver");
/* Set property list and file name for log driver. */
fapl = h5_fileaccess();
- if(H5Pset_fapl_log(fapl, LOG_FILENAME, 0, buf_size) < 0)
+ if(H5Pset_fapl_log(fapl, LOG_FILENAME, flags, buf_size) < 0)
TEST_ERROR;
h5_fixname(FILENAME[6], fapl, filename, sizeof filename);
diff --git a/tools/h5jam/h5unjam.c b/tools/h5jam/h5unjam.c
index c304045..18b5f11 100644
--- a/tools/h5jam/h5unjam.c
+++ b/tools/h5jam/h5unjam.c
@@ -43,14 +43,14 @@ static const char *s_opts = "hu:i:o:d:V";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
- {"i", require_arg, 'i'}, /* input file */
- {"u", require_arg, 'u'}, /* user block file */
- {"o", require_arg, 'o'}, /* output file */
- {"delete", no_arg, 'd'}, /* delete ub */
- {"delet", no_arg, 'd'},
- {"dele", no_arg, 'd'},
- {"del", no_arg, 'd'},
- {"de", no_arg, 'd'},
+ {"i", require_arg, 'i'}, /* input file */
+ {"u", require_arg, 'u'}, /* user block file */
+ {"o", require_arg, 'o'}, /* output file */
+ {"delete", no_arg, 'd'}, /* delete ub */
+ {"delet", no_arg, 'd'},
+ {"dele", no_arg, 'd'},
+ {"del", no_arg, 'd'},
+ {"de", no_arg, 'd'},
{ NULL, 0, '\0' }
};
@@ -123,86 +123,69 @@ usage(const char *prog)
}
/*-------------------------------------------------------------------------
- * Function: leave
- *
- * Purpose: Shutdown and call exit()
- *
- * Return: Does not return
- *
- *-------------------------------------------------------------------------
- */
-static void
-leave(int ret)
-{
- if (ub_file)
- HDfree (ub_file);
- if (input_file)
- HDfree (input_file);
- if (output_file)
- HDfree (output_file);
-
- h5tools_close();
-
- HDexit(ret);
-}
-
-/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parse the command line for the h5dumper.
*
- * Return: Success:
+ * Return: Success: EXIT_SUCCESS;
*
- * Failure: Exits program with EXIT_FAILURE value.
- *
- * Programmer:
- *
- * Modifications:
+ * Failure: Exits function with EXIT_FAILURE value.
*
*-------------------------------------------------------------------------
*/
-
-static void
+static int
parse_command_line(int argc, const char *argv[])
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
- switch ((char) opt) {
- case 'o':
- output_file = HDstrdup (opt_arg);
- break;
- case 'i':
- input_file = HDstrdup (opt_arg);
- break;
- case 'u':
- ub_file = HDstrdup (opt_arg);
- break;
- case 'd':
- do_delete = TRUE;
- break;
- case 'h':
- usage(h5tools_getprogname());
- leave(EXIT_SUCCESS);
- case 'V':
- print_version(h5tools_getprogname());
- leave(EXIT_SUCCESS);
- case '?':
- default:
- usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ switch((char)opt) {
+ case 'o':
+ output_file = HDstrdup(opt_arg);
+ break;
+
+ case 'i':
+ input_file = HDstrdup(opt_arg);
+ break;
+
+ case 'u':
+ ub_file = HDstrdup(opt_arg);
+ break;
+
+ case 'd':
+ do_delete = TRUE;
+ break;
+
+ case 'h':
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+
+ case 'V':
+ print_version (h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+
+ case '?':
+ default:
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
}
- /* check for file name to be processed */
-/*
- if (argc <= opt_ind+2) {
- error_msg("missing file name\n");
- usage(h5tools_getprogname());
- HDexit(EXIT_FAILURE);
- }
-*/
+ return EXIT_SUCCESS;
+
+done:
+ if(input_file)
+ HDfree(input_file);
+ if(output_file)
+ HDfree(output_file);
+ if(ub_file)
+ HDfree(ub_file);
+
+ return EXIT_FAILURE;
}
/*-------------------------------------------------------------------------
@@ -246,13 +229,15 @@ main(int argc, const char *argv[])
/* Initialize h5tools lib */
h5tools_init();
- parse_command_line(argc, argv);
+ if(EXIT_FAILURE == parse_command_line(argc, argv))
+ goto done;
if (input_file == NULL) {
/* no user block */
error_msg("missing arguemnt for HDF5 file input.\n");
help_ref_msg(stderr);
- leave (EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
testval = H5Fis_hdf5(input_file);
@@ -286,8 +271,10 @@ main(int argc, const char *argv[])
goto done;
}
- H5Pclose(plist);
- H5Fclose(ifile);
+ status = H5Pclose(plist);
+ HDassert(status >= 0);
+ status = H5Fclose(ifile);
+ HDassert(status >= 0);
if (usize == 0) {
/* no user block to remove: message? */
@@ -320,7 +307,7 @@ main(int argc, const char *argv[])
if (ub_file == NULL) {
/* write to sdtout */
- ufid = HDdup(1);
+ ufid = STDOUT_FILENO;
}
else {
ufid = HDopen(ub_file,O_WRONLY|O_CREAT|O_TRUNC, 0644 );
@@ -371,17 +358,25 @@ main(int argc, const char *argv[])
}
done:
- if (ub_file) {
- HDfree (ub_file);
- if (ufid >= 0) HDclose(ufid);
+ if(input_file)
+ HDfree(input_file);
+ if(output_file)
+ HDfree(output_file);
+ if(ub_file) {
+ HDfree(ub_file);
+ if(ufid >= 0)
+ status = HDclose(ufid);
+ HDassert(status >= 0);
}
- if (input_file)
- HDfree (input_file);
- if (output_file)
- HDfree (output_file);
- if (h5fid >= 0) HDclose(h5fid);
- if (ifid >= 0) HDclose(ifid);
+ if(h5fid >= 0) {
+ status = HDclose(h5fid);
+ HDassert(status >= 0);
+ }
+ if(ifid >= 0) {
+ status = HDclose(ifid);
+ HDassert(status >= 0);
+ }
return h5tools_getstatus();
}
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index 66c0e64..0d9bc15 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -30,10 +30,6 @@
#include "h5tools_utils.h"
#include "H5private.h"
-#define SANITY_CHECK
-
-#define ALIGN(A,Z) ((((A) + (Z) - 1) / (Z)) * (Z))
-
/* global variables */
hid_t H5tools_ERR_STACK_g = 0;
hid_t H5tools_ERR_CLS_g = -1;
@@ -1122,7 +1118,6 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t
while(block_index > 0) {
size_t bytes_in = 0; /* # of bytes to write */
size_t bytes_wrote = 0; /* # of bytes written */
- size_t item_size = size; /* size of items in bytes */
if(block_index > sizeof(size_t))
bytes_in = sizeof(size_t);
@@ -1168,16 +1163,21 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t
break;
case H5T_COMPOUND:
{
- unsigned j;
- hid_t memb;
+ int snmembs;
unsigned nmembs;
- size_t offset;
- nmembs = H5Tget_nmembers(tid);
+ if((snmembs = H5Tget_nmembers(tid)) < 0)
+ H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers of compound failed");
+ nmembs = (unsigned)snmembs;
for (block_index = 0; block_index < block_nelmts; block_index++) {
+ unsigned j;
+
mem = ((unsigned char*)_mem) + block_index * size;
for (j = 0; j < nmembs; j++) {
+ hid_t memb;
+ size_t offset;
+
offset = H5Tget_member_offset(tid, j);
memb = H5Tget_member_type(tid, j);
@@ -1192,7 +1192,7 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t
case H5T_ARRAY:
{
int k, ndims;
- hsize_t i, dims[H5S_MAX_RANK], temp_nelmts, nelmts;
+ hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts;
hid_t memb;
/* get the array's base datatype for each element */
@@ -1219,7 +1219,6 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t
break;
case H5T_VLEN:
{
- unsigned int i;
hsize_t nelmts;
hid_t memb;
@@ -1305,10 +1304,9 @@ render_bin_output_region_data_blocks(hid_t region_id, FILE *stream,
hsize_t *start = NULL;
hsize_t *count = NULL;
hsize_t numelem;
- hsize_t numindex;
hsize_t total_size[H5S_MAX_RANK];
int jndx;
- int type_size;
+ size_t type_size;
hid_t mem_space = -1;
void *region_buf = NULL;
int blkndx;
@@ -1399,15 +1397,17 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
FILE *stream, hid_t container)
{
HERR_INIT(hbool_t, TRUE)
- hssize_t nblocks;
+ hssize_t snblocks;
+ hsize_t nblocks;
hsize_t alloc_size;
- hsize_t *ptdata = NULL;
+ hsize_t *ptdata;
int ndims;
hid_t dtype;
hid_t type_id;
- if((nblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0)
+ if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0)
H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed");
+ nblocks = (hsize_t)snblocks;
/* Print block information */
if((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
@@ -1463,13 +1463,12 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
* hssize_t npoints is the number of points in the region
*-------------------------------------------------------------------------
*/
-int
+static int
render_bin_output_region_data_points(hid_t region_space, hid_t region_id,
FILE *stream, hid_t container,
- int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
+ int ndims, hid_t type_id, hssize_t npoints)
{
hsize_t *dims1 = NULL;
- int jndx;
int type_size;
hid_t mem_space = -1;
void *region_buf = NULL;
@@ -1525,8 +1524,6 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id,
{
HERR_INIT(hbool_t, TRUE)
hssize_t npoints;
- hsize_t alloc_size;
- hsize_t *ptdata;
int ndims;
hid_t dtype;
hid_t type_id;
@@ -1538,15 +1535,6 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id,
if((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
- alloc_size = npoints * ndims * sizeof(ptdata[0]);
- HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/
- if(NULL == (ptdata = (hsize_t *)HDmalloc((size_t) alloc_size)))
- HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "Could not allocate buffer for ptdata");
-
- H5_CHECK_OVERFLOW(npoints, hssize_t, hsize_t);
- if(H5Sget_select_elem_pointlist(region_space, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
- HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Sget_select_elem_pointlist failed");
-
if((dtype = H5Dget_type(region_id)) < 0)
HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Dget_type failed");
@@ -1554,11 +1542,9 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id,
HGOTO_ERROR(FALSE, H5E_tools_min_id_g, "H5Tget_native_type failed");
render_bin_output_region_data_points(region_space, region_id,
- stream, container, ndims, type_id, npoints, ptdata);
+ stream, container, ndims, type_id, npoints);
done:
- HDfree(ptdata);
-
if(H5Tclose(type_id) < 0)
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");