Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol

10 files changed, 209 insertions, 93 deletions

diff --git a/MANIFEST b/MANIFEST
index 00f16fc..144b165 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -92,8 +92,12 @@
 ./bin/timekeeper      _DO_NOT_DISTRIBUTE_
 ./bin/trace
 ./bin/yodconfigure
+./bin/batch/knl_ctestP.sl
+./bin/batch/knl_ctestS.sl
 ./bin/batch/knl_ctestSP.sl
 ./bin/batch/knl_H5detect.sl.in.cmake
+./bin/batch/sbatch_ctestS.sl
+./bin/batch/sbatch_ctestP.sl
 ./bin/batch/sbatch_ctestSP.sl
 ./bin/pkgscrpts/h5rmflags                  _DO_NOT_DISTRIBUTE_
 ./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl  _DO_NOT_DISTRIBUTE_
@@ -3193,6 +3197,7 @@
 ./config/cmake/UseJavaSymlinks.cmake
 ./config/cmake/userblockTest.cmake
 ./config/cmake/vfdTest.cmake
+./config/cmake/wait_H5Tinit.cmake
 
 ./config/cmake_ext_mod/ConfigureChecks.cmake
 ./config/cmake_ext_mod/CTestCustom.cmake
diff --git a/bin/batch/knl_ctestP.sl b/bin/batch/knl_ctestP.sl
new file mode 100644
index 0000000..3a03fe2
--- /dev/null
+++ b/bin/batch/knl_ctestP.sl
@@ -0,0 +1,18 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,flat
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd build
+#run parallel tests except t_cache_image test
+CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/knl_ctestS.sl b/bin/batch/knl_ctestS.sl
new file mode 100644
index 0000000..5b77c5b
--- /dev/null
+++ b/bin/batch/knl_ctestS.sl
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,flat
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd build
+CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/sbatch_ctestP.sl b/bin/batch/sbatch_ctestP.sl
new file mode 100644
index 0000000..e967dce
--- /dev/null
+++ b/bin/batch/sbatch_ctestP.sl
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+
+cd build
+CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/sbatch_ctestS.sl b/bin/batch/sbatch_ctestS.sl
new file mode 100644
index 0000000..a103356
--- /dev/null
+++ b/bin/batch/sbatch_ctestS.sl
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+
+cd build
+CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"
diff --git a/bin/batch/sbatch_ctestSP.sl b/bin/batch/sbatch_ctestSP.sl
index 56da347..5d79d9b 100644
--- a/bin/batch/sbatch_ctestSP.sl
+++ b/bin/batch/sbatch_ctestSP.sl
@@ -1,6 +1,5 @@
 #!/bin/bash
 
-#SBATCH -p knl -C quad,flat
 #SBATCH --nodes=1
 #SBATCH -t 01:00:00
 #SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,8 +7,6 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-module load cmake
-module load craype-hugepages4M
 
 cd build
 CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index 43cd48d..9534b1e 100755
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -36,10 +36,6 @@ if (NOT SITE_OS_NAME)
   message (STATUS "Dashboard script uname output: ${osname}-${osrel}-${cpu}\n")

 

   set (CTEST_BUILD_NAME  "${osname}-${osrel}-${cpu}")

-  if (SITE_BUILDNAME_SUFFIX)

-    set (CTEST_BUILD_NAME  "${SITE_BUILDNAME_SUFFIX}-${CTEST_BUILD_NAME}")

-  endif ()

-  set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS}")

 else ()

   ## machine name provided

   ## --------------------------

@@ -48,11 +44,11 @@ else ()
   else ()

     set (CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_COMPILER_NAME}")

   endif ()

-  if (SITE_BUILDNAME_SUFFIX)

-    set (CTEST_BUILD_NAME "${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX}")

-  endif ()

-  set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")

 endif ()

+if (SITE_BUILDNAME_SUFFIX)
+  set (CTEST_BUILD_NAME  "${SITE_BUILDNAME_SUFFIX}-${CTEST_BUILD_NAME}")
+endif ()
+set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
 

 #-----------------------------------------------------------------------------

 # MAC machines need special option

@@ -158,7 +154,12 @@ endif ()
 # Use multiple CPU cores to build

 include (ProcessorCount)

 ProcessorCount (N)

-if (NOT N EQUAL 0)

+if (NOT N EQUAL 0)
+  if (MAX_PROC_COUNT)
+    if (N GREATER MAX_PROC_COUNT)
+      set (N ${MAX_PROC_COUNT})
+    endif ()
+  endif ()
   if (NOT WIN32)

     set (CTEST_BUILD_FLAGS -j${N})

   endif ()

@@ -189,10 +190,10 @@ endforeach ()
 #-----------------------------------------------------------------------------

 # Initialize the CTEST commands

 #------------------------------

-if(CMAKE_GENERATOR_TOOLSET)

-  set(CTEST_CONFIGURE_TOOLSET  "-T${CMAKE_GENERATOR_TOOLSET}")

+if (CMAKE_GENERATOR_TOOLSET)

+  set (CTEST_CONFIGURE_TOOLSET  "-T${CMAKE_GENERATOR_TOOLSET}")

 else ()

-  set(CTEST_CONFIGURE_TOOLSET  "")

+  set (CTEST_CONFIGURE_TOOLSET  "")

 endif()

 if (LOCAL_MEMCHECK_TEST)

   find_program (CTEST_MEMORYCHECK_COMMAND NAMES valgrind)

@@ -266,41 +267,64 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
       if (NOT LOCAL_BATCH_TEST)
         ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
       else ()
-        execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_NAME})
+        file(STRINGS ${CTEST_BINARY_DIRECTORY}/Testing/TAG TAG_CONTENTS REGEX "^2([0-9]+)[-]([0-9]+)$")
+        execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_SOURCE_DIRECTORY}/bin/batch/${LOCAL_BATCH_SCRIPT_NAME})
+        message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+        execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+        while(result)
+          ctest_sleep(60)
+          execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+        endwhile(result)
+        if (LOCAL_BATCH_SCRIPT_PARALLEL_NAME)
+          if (LOCAL_SUBMIT)
+            ctest_submit (PARTS Test)
+          endif ()
+          message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for serial tests. Renaming to SerialTest.xml")
+          file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/SerialTest.xml)
+          unset(result CACHE)
+          execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_SOURCE_DIRECTORY}/bin/batch/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+          message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+          execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+          while(result)
+            ctest_sleep(60)
+            execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+          endwhile(result)
+          message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for parallel tests.")
+        endif()
       endif ()
-      if (LOCAL_SUBMIT)

-        ctest_submit (PARTS Test)

-      endif ()

-      if (${res} LESS 0 OR ${res} GREATER 0)

-        file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")

-      endif ()

-    else ()

-      ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})

-      if (LOCAL_SUBMIT)

-        ctest_submit (PARTS MemCheck)

-      endif ()

-    endif ()

-    if (LOCAL_COVERAGE_TEST)

-      ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)

-      if (LOCAL_SUBMIT)

-        ctest_submit (PARTS Coverage)

-      endif ()

-    endif ()

-  endif ()

-

-  if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)

-    ##-----------------------------------------------

-    ## Package the product

-    ##-----------------------------------------------

-    execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V

-      WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}

-      RESULT_VARIABLE cpackResult

-      OUTPUT_VARIABLE cpackLog

-      ERROR_VARIABLE cpackLog.err

-    )

-    file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")

-    if (cpackResult GREATER 0)

-      file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")

-    endif ()

-  endif ()

-#-----------------------------------------------------------------------------

+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS Test)
+      endif ()
+      if (${res} LESS 0 OR ${res} GREATER 0)
+        file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")
+      endif ()
+    else ()
+      ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS MemCheck)
+      endif ()
+    endif ()
+    if (LOCAL_COVERAGE_TEST)
+      ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS Coverage)
+      endif ()
+    endif ()
+  endif ()
+
+  if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)
+    ##-----------------------------------------------
+    ## Package the product
+    ##-----------------------------------------------
+    execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V
+      WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
+      RESULT_VARIABLE cpackResult
+      OUTPUT_VARIABLE cpackLog
+      ERROR_VARIABLE cpackLog.err
+    )
+    file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
+    if (cpackResult GREATER 0)
+      file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")
+    endif ()
+  endif ()
+#-----------------------------------------------------------------------------
diff --git a/config/cmake/scripts/HDF5options.cmake b/config/cmake/scripts/HDF5options.cmake
index 629d277..6d1a57a 100755
--- a/config/cmake/scripts/HDF5options.cmake
+++ b/config/cmake/scripts/HDF5options.cmake
@@ -17,8 +17,12 @@
 ### uncomment/comment and change the following lines for other configuration options
 
 #############################################################################################
+####      maximum parallel processor count for build and test       ####
+#set (MAX_PROC_COUNT 8)
+
+#############################################################################################
 ####      alternate toolsets       ####
-#set(CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
+#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
 
 #############################################################################################
 ####      Only build static libraries       ####
@@ -50,54 +54,54 @@ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTA
 ####      ext libraries       ####
 
 ### ext libs from tgz
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
 ### ext libs from git
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
 ### ext libs on system
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
 
 ### disable ext zlib building
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
 ### disable ext szip building
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
 
 ####      package examples       ####
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.10.9-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.10.9-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
 
 #############################################################################################
 ### enable parallel builds
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
 
 #############################################################################################
 ### enable thread-safety builds
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
 
 #############################################################################################
 ### disable test program builds
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
 
 #############################################################################################
 ### disable packaging
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
 ### Create install package with external libraries (szip, zlib)
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
 
 #############################################################################################
 ### use a toolchain file
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
 
 #############################################################################################
diff --git a/config/cmake/wait_H5Tinit.cmake b/config/cmake/wait_H5Tinit.cmake
new file mode 100644
index 0000000..c0b4d06
--- /dev/null
+++ b/config/cmake/wait_H5Tinit.cmake
@@ -0,0 +1,11 @@
+cmake_minimum_required (VERSION 3.10)
+
+message(STATUS "Check for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+while(H5TI_result)
+  ctest_sleep(30)
+  message(STATUS "Checking again for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+  execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+endwhile(H5TI_result)
+file (TOUCH "${HDF5_BINARY_DIR}/H5Tinit_created")
+message(STATUS "Found ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 341fa7a..f1193b8 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -948,39 +948,46 @@ if (NOT EXISTS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c)
         ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT} ESCAPE_QUOTES @ONLY
     )
     add_custom_command (
-        OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+        OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
         COMMAND ${HDF5_BATCH_CMD}
         ARGS ${HDF5_BINARY_DIR}/${HDF5_BATCH_H5DETECT_SCRIPT}
+        COMMAND ${CMAKE_COMMAND}
+        ARGS -E echo "Executed batch command to create H5Tinit.c"
         DEPENDS H5detect
         WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}
     )
+    add_custom_target (gen_H5Tinit
+        COMMAND ${CMAKE_COMMAND} -P ${HDF5_SOURCE_DIR}/config/cmake/wait_H5Tinit.cmake
+    )
+    if (BUILD_SHARED_LIBS)
+      add_custom_command (
+          OUTPUT     ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
+          COMMAND    ${CMAKE_COMMAND}
+          ARGS       -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
+          DEPENDS    gen_H5Tinit ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit_created
+      )
+      set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
+    endif ()
   else ()
     add_custom_command (
-        OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+        OUTPUT ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
         COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR}$<TARGET_FILE:H5detect>
-        ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
+        ARGS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
         DEPENDS H5detect
         WORKING_DIRECTORY ${HDF5_GENERATED_SOURCE_DIR}
     )
+    if (BUILD_SHARED_LIBS)
+      add_custom_command (
+          OUTPUT     ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
+          COMMAND    ${CMAKE_COMMAND}
+          ARGS       -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
+          DEPENDS    ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
+      )
+      set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
+    endif ()
   endif ()
-  add_custom_target (gen_H5Tinit ALL DEPENDS ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp)
-  add_custom_command (
-      OUTPUT     ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
-      COMMAND    ${CMAKE_COMMAND}
-      ARGS       -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp" "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c"
-      DEPENDS    gen_H5Tinit ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.tmp
-  )
   set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c PROPERTIES GENERATED TRUE)
 endif ()
-if (BUILD_SHARED_LIBS)
-  add_custom_command (
-      OUTPUT     ${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c
-      COMMAND    ${CMAKE_COMMAND}
-      ARGS       -E copy_if_different "${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c" "${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c"
-      DEPENDS    ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c
-  )
-  set_source_files_properties (${HDF5_GENERATED_SOURCE_DIR}/shared/H5Tinit.c PROPERTIES GENERATED TRUE)
-endif ()
 
 add_executable (H5make_libsettings ${HDF5_SRC_DIR}/H5make_libsettings.c)
 target_include_directories(H5make_libsettings PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")