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author | Allen Byrne <byrn@hdfgroup.org> | 2018-03-12 20:59:52 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2018-03-12 20:59:52 (GMT) |
commit | 273abad384ee081e173cbff84deed24487b228fd (patch) | |
tree | a2cf6f05acc55d2c811316f03da5f07b3941862c | |
parent | f0a45a145b5a85cc65bafaa29da25a5550108f10 (diff) | |
parent | cf110b33c825f15e8a101b5772d15ec282ff85bf (diff) | |
download | hdf5-273abad384ee081e173cbff84deed24487b228fd.zip hdf5-273abad384ee081e173cbff84deed24487b228fd.tar.gz hdf5-273abad384ee081e173cbff84deed24487b228fd.tar.bz2 |
Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit 'cf110b33c825f15e8a101b5772d15ec282ff85bf': (105 commits)
Unify the test (t_bigio.c) between hdf5_1_10 and develop
Remove comparison to NULL for variables to be freed.
Add HDfree of vector, matrix_out and matrix_out1 previously HDmalloced in coll_write_test().
merged from develop
merged from develop
removed duplicate code
Code improvement Description: - Removed memory leaks caused by accidentally invoking p_get_member_type - Added the call to test_lcpl, missed previously Platforms tested: Linux/64 (jelly) Linux/ppc64 (ostrich) Darwin (osx1010test)
Updated RELEASE.txt Description: - Wrappers for H5Lcreate_soft, H5Lcreate_hard, H5Lcopy, H5Lmove, H5Ldelete, and H5Lget_info - Class LinkCreatPropList - Fixed typo in source file Platforms tested: Linux/64 (jelly)
Updated for H5LcreatProp.[h,cpp]
Updated MANIFEST for H5LcreatProp.[h,cpp]
HDFFV-10149 continued Description: - Moved the new wrappers committed on Mar 9: 43158f3bb352f374c31556a5d0dc463a09e0b32e to H5Location and renamed some of them for overloading. This is because the loc_id in the C APIs can be file, group, dataset, named datatype, and attribute. Previous implementation was wrong following some inaccurate C API reference manual.
Re-factor coding for H5P/Sencode with libver bounds.
Removed commented out code from H5FDmpio.c, H5FDprivate.h and H5Fint.c
Upated cpp doc.
Added C++ wrappers - HDFFV-10149 Description: Added the following wrappers to class H5::Group: + H5Lcreate_soft: // Creates a soft link from link_name to target_name. void newLink(const char *target_name, const char *link_name,...) void newLink(const H5std_string& target_name,...)
Improve code Description: Added notes and changed argument to H5Fcreate to clarify the latest situation Platforms tested: Linux/64 (jelly)
Resolve compilation errors.
Add release note
Remove obsolete comments
Change CMake min to 3.10
...
253 files changed, 13475 insertions, 9104 deletions
diff --git a/CMakeInstallation.cmake b/CMakeInstallation.cmake index 0bfb2cc..4a09d2d 100644 --- a/CMakeInstallation.cmake +++ b/CMakeInstallation.cmake @@ -144,24 +144,6 @@ install ( ) #----------------------------------------------------------------------------- -# Create pkgconfig files -#----------------------------------------------------------------------------- -#foreach (libs ${LINK_LIBS}) -# set (LIBS "${LIBS} -l${libs}") -#endforeach () -#foreach (libs ${HDF5_LIBRARIES_TO_EXPORT}) -# set (HDF5LIBS "${HDF5LIBS} -l${libs}") -#endforeach () -#configure_file ( -# ${HDF_RESOURCES_DIR}/libhdf5.pc.in -# ${HDF5_BINARY_DIR}/CMakeFiles/libhdf5.pc @ONLY -#) -#install ( -# FILES ${HDF5_BINARY_DIR}/CMakeFiles/libhdf5.pc -# DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig -#) - -#----------------------------------------------------------------------------- # Configure the HDF518_Examples.cmake file and the examples #----------------------------------------------------------------------------- option (HDF5_PACK_EXAMPLES "Package the HDF5 Library Examples Compressed File" OFF) diff --git a/CMakeLists.txt b/CMakeLists.txt index e7dda17..5ac4c60 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5 C CXX) #----------------------------------------------------------------------------- @@ -671,12 +671,6 @@ if (HDF5_ENABLE_THREADSAFE) endif () endif () -# ----------------------------------------------------------------------- -# wrapper script variables -# -#set (CFLAGS "${C_DEFINES}") -#set (CXXFLAGS "${CXX_DEFINES}") - #----------------------------------------------------------------------------- # Add the HDF5 Library Target to the build #----------------------------------------------------------------------------- @@ -806,11 +800,6 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for endif () endif () - # ----------------------------------------------------------------------- - # wrapper script variables - # -# set (FCFLAGS "${Fortran_DEFINES}") - add_subdirectory (fortran) if (HDF5_BUILD_HL_LIB) if (EXISTS "${HDF5_SOURCE_DIR}/hl/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/fortran") @@ -374,6 +374,8 @@ ./c++/src/H5IntType.h ./c++/src/H5LaccProp.cpp ./c++/src/H5LaccProp.h +./c++/src/H5LcreatProp.cpp +./c++/src/H5LcreatProp.h ./c++/src/H5Library.cpp ./c++/src/H5Library.h ./c++/src/H5Location.cpp @@ -981,6 +983,7 @@ ./test/gen_bad_ohdr.c ./test/gen_bad_compound.c ./test/gen_bogus.c +./test/gen_bounds.c ./test/gen_cross.c ./test/gen_deflate.c ./test/gen_file_image.c @@ -2440,6 +2443,7 @@ #test files for h5repack ./tools/test/h5repack/testfiles/README +./tools/test/h5repack/testfiles/bounds_latest_latest.h5 ./tools/test/h5repack/testfiles/h5repack_aggr.h5 ./tools/test/h5repack/testfiles/h5repack_attr.h5 ./tools/test/h5repack/testfiles/h5repack_attr_refs.h5 @@ -3082,6 +3086,8 @@ ./config/cmake/HDF5Macros.cmake ./config/cmake/HDF5UseFortran.cmake ./config/cmake/jrunTest.cmake +./config/cmake/libh5cc.in +./config/cmake/libhdf5.pc.in ./config/cmake/libhdf5.settings.cmake.in ./config/cmake/mccacheinit.cmake ./config/cmake/patch.xml diff --git a/c++/CMakeLists.txt b/c++/CMakeLists.txt index 2d3ab0f..2c161f1 100644 --- a/c++/CMakeLists.txt +++ b/c++/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_CPP) #----------------------------------------------------------------------------- diff --git a/c++/examples/CMakeLists.txt b/c++/examples/CMakeLists.txt index 397c300..22ecb19 100644 --- a/c++/examples/CMakeLists.txt +++ b/c++/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_CPP_EXAMPLES) # -------------------------------------------------------------------- diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt index 921497f..1136d6a 100644 --- a/c++/src/CMakeLists.txt +++ b/c++/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_CPP_SRC) #----------------------------------------------------------------------------- @@ -33,6 +33,7 @@ set (CPP_SOURCES ${HDF5_CPP_SRC_SOURCE_DIR}/H5IdComponent.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.cpp + ${HDF5_CPP_SRC_SOURCE_DIR}/H5LcreatProp.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.cpp @@ -70,6 +71,7 @@ set (CPP_HDRS ${HDF5_CPP_SRC_SOURCE_DIR}/H5Include.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.h + ${HDF5_CPP_SRC_SOURCE_DIR}/H5LcreatProp.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.h @@ -139,3 +141,50 @@ if (HDF5_EXPORTED_TARGETS) INCLUDES DESTINATION include ) endif () + +#----------------------------------------------------------------------------- +# Create pkgconfig files +#----------------------------------------------------------------------------- +set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) +set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) +set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) +set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) +set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}") +set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") + +set (_PKG_CONFIG_LIBS_PRIVATE) + +set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_CPP_LIB_CORENAME}") +if (BUILD_SHARED_LIBS) + set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_CPP_LIB_CORENAME}") +endif () + +set (_PKG_CONFIG_REQUIRES "${HDF5_LIB_CORENAME}") +set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_LIB_CORENAME}") + +configure_file ( + ${HDF_RESOURCES_DIR}/libhdf5.pc.in + ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + @ONLY +) +install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig + COMPONENT cpplibraries +) + +if (NOT WIN32) + set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER}) + configure_file ( + ${HDF_RESOURCES_DIR}/libh5cc.in + ${HDF5_BINARY_DIR}/CMakeFiles/h5c++ + @ONLY + ) + install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5c++ + DESTINATION ${HDF5_INSTALL_BIN_DIR} + PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE + COMPONENT cpplibraries + ) +endif () + diff --git a/c++/src/H5AbstractDs.cpp b/c++/src/H5AbstractDs.cpp index b900b90..823e873 100644 --- a/c++/src/H5AbstractDs.cpp +++ b/c++/src/H5AbstractDs.cpp @@ -22,6 +22,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5ArrayType.cpp b/c++/src/H5ArrayType.cpp index 15ac140..49c31d2 100644 --- a/c++/src/H5ArrayType.cpp +++ b/c++/src/H5ArrayType.cpp @@ -19,6 +19,7 @@ #include "H5PropList.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -119,7 +120,6 @@ ArrayType::ArrayType(const H5Location& loc, const H5std_string& dtype_name) : Da // Closes the id on the lhs object first with setId, then copies // each data member from the rhs object. (Issue HDFFV-9562) // Programmer Binh-Minh Ribler - Mar 2016 -// Modification //-------------------------------------------------------------------------- ArrayType& ArrayType::operator=(const ArrayType& rhs) { @@ -165,9 +165,6 @@ DataType* ArrayType::decode() const ///\return Number of dimensions ///\exception H5::DataTypeIException // Programmer Binh-Minh Ribler - May 2004 -// Modification -// Apr, 2016 -// Became const. //-------------------------------------------------------------------------- int ArrayType::getArrayNDims() const { @@ -188,9 +185,6 @@ int ArrayType::getArrayNDims() const ///\return Number of dimensions ///\exception H5::DataTypeIException // Programmer Binh-Minh Ribler - May 2004 -// Modification -// Apr, 2016 -// Became const. //-------------------------------------------------------------------------- int ArrayType::getArrayDims(hsize_t* dims) const { diff --git a/c++/src/H5AtomType.cpp b/c++/src/H5AtomType.cpp index 5e709af..5c24cf9 100644 --- a/c++/src/H5AtomType.cpp +++ b/c++/src/H5AtomType.cpp @@ -19,6 +19,7 @@ #include "H5PropList.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -175,8 +176,8 @@ size_t AtomType::getPrecision() const ///\param precision - IN: Number of bits of precision ///\exception H5::DataTypeIException ///\par Description -/// For information, please see C layer Reference Manuat at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-SetPrecision +/// For information, please refer to the H5Tset_precision API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void AtomType::setPrecision(size_t precision) const @@ -195,8 +196,8 @@ void AtomType::setPrecision(size_t precision) const ///\return Offset value ///\exception H5::DataTypeIException ///\par Description -/// For information, please see C layer Reference Manuat at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-GetOffset +/// For information, please refer to the H5Tget_offset API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 // Modification // 12/05/00: due to C API change @@ -222,8 +223,8 @@ int AtomType::getOffset() const ///\param offset - IN: Offset of first significant bit ///\exception H5::DataTypeIException ///\par Description -/// For information, please see C layer Reference Manuat at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-SetOffset +/// For information, please refer to the H5Tset_offset API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void AtomType::setOffset(size_t offset) const diff --git a/c++/src/H5Attribute.cpp b/c++/src/H5Attribute.cpp index cbf3029..d90857f 100644 --- a/c++/src/H5Attribute.cpp +++ b/c++/src/H5Attribute.cpp @@ -27,6 +27,7 @@ #include "H5FcreatProp.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5CommonFG.cpp b/c++/src/H5CommonFG.cpp index af5ba0e..979816b 100644 --- a/c++/src/H5CommonFG.cpp +++ b/c++/src/H5CommonFG.cpp @@ -22,6 +22,7 @@ #include "H5DxferProp.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5CompType.cpp b/c++/src/H5CompType.cpp index d357fbc..3731fd4 100644 --- a/c++/src/H5CompType.cpp +++ b/c++/src/H5CompType.cpp @@ -20,6 +20,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -303,7 +304,7 @@ DataType CompType::getMemberDataType(unsigned member_num) const ArrayType CompType::getMemberArrayType(unsigned member_num) const { try { - ArrayType arraytype(p_get_member_type(member_num)); + ArrayType arraytype; f_DataType_setId(&arraytype, p_get_member_type(member_num)); return(arraytype); } @@ -323,10 +324,10 @@ ArrayType CompType::getMemberArrayType(unsigned member_num) const //-------------------------------------------------------------------------- CompType CompType::getMemberCompType(unsigned member_num) const { - try { - CompType comptype(p_get_member_type(member_num)); + try { + CompType comptype; f_DataType_setId(&comptype, p_get_member_type(member_num)); - return(comptype); + return(comptype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberCompType", E.getDetailMsg()); @@ -344,10 +345,10 @@ CompType CompType::getMemberCompType(unsigned member_num) const //-------------------------------------------------------------------------- EnumType CompType::getMemberEnumType(unsigned member_num) const { - try { - EnumType enumtype(p_get_member_type(member_num)); + try { + EnumType enumtype; f_DataType_setId(&enumtype, p_get_member_type(member_num)); - return(enumtype); + return(enumtype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberEnumType", E.getDetailMsg()); @@ -365,10 +366,10 @@ EnumType CompType::getMemberEnumType(unsigned member_num) const //-------------------------------------------------------------------------- IntType CompType::getMemberIntType(unsigned member_num) const { - try { - IntType inttype(p_get_member_type(member_num)); + try { + IntType inttype; f_DataType_setId(&inttype, p_get_member_type(member_num)); - return(inttype); + return(inttype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberIntType", E.getDetailMsg()); @@ -386,10 +387,10 @@ IntType CompType::getMemberIntType(unsigned member_num) const //-------------------------------------------------------------------------- FloatType CompType::getMemberFloatType(unsigned member_num) const { - try { - FloatType floatype(p_get_member_type(member_num)); + try { + FloatType floatype; f_DataType_setId(&floatype, p_get_member_type(member_num)); - return(floatype); + return(floatype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberFloatType", E.getDetailMsg()); @@ -407,10 +408,10 @@ FloatType CompType::getMemberFloatType(unsigned member_num) const //-------------------------------------------------------------------------- StrType CompType::getMemberStrType(unsigned member_num) const { - try { - StrType strtype(p_get_member_type(member_num)); + try { + StrType strtype; f_DataType_setId(&strtype, p_get_member_type(member_num)); - return(strtype); + return(strtype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberStrType", E.getDetailMsg()); @@ -428,10 +429,10 @@ StrType CompType::getMemberStrType(unsigned member_num) const //-------------------------------------------------------------------------- VarLenType CompType::getMemberVarLenType(unsigned member_num) const { - try { - VarLenType varlentype(p_get_member_type(member_num)); + try { + VarLenType varlentype; f_DataType_setId(&varlentype, p_get_member_type(member_num)); - return(varlentype); + return(varlentype); } catch (DataTypeIException& E) { throw DataTypeIException("CompType::getMemberVarLenType", E.getDetailMsg()); diff --git a/c++/src/H5Cpp.h b/c++/src/H5Cpp.h index 09914e8..b9da80a 100644 --- a/c++/src/H5Cpp.h +++ b/c++/src/H5Cpp.h @@ -25,6 +25,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5CppDoc.h b/c++/src/H5CppDoc.h index bfab9cd..6eb85bf 100644 --- a/c++/src/H5CppDoc.h +++ b/c++/src/H5CppDoc.h @@ -26,12 +26,9 @@ * * The C++ API provides C++ wrappers for the HDF5 C Library. * - * It is assumed that the user has knowledge of the - * <a href="https://support.hdfgroup.org/HDF5/doc/H5.format.html"> - * HDF5 file format</a> and its components. - * For more information on the HDF5 C Library, see the - * <a href="https://support.hdfgroup.org/HDF5/doc/index.html"> - * HDF5 Software Documentation</a> page. + * It is assumed that the user has knowledge of the HDF5 file format and its + * components. For more information on the HDF5 C Library, please refer to + * the HDF5 Software Documentation page. * * Because the HDF5 C Library maps very well to * the object oriented design approach, classes in the C++ API can @@ -51,15 +48,13 @@ Datatype Interface (H5T) DataType and subclasses \endverbatim * - * This <a href="https://support.hdfgroup.org/HDF5/doc/cpplus_RM/C2Cppfunction_map.mht"> + * This <a href="./C2Cppfunction_map.mht"> * table </a> provides a map from the C APIs to the C++ member functions. * <br /> * \section install_sec Installation * * The HDF5 C++ API is included with the HDF5 source code and can * be obtained from - * <a href="https://support.hdfgroup.org/HDF5/release/obtainsrc.html"> - * https://support.hdfgroup.org/HDF5/release/obtainsrc.html</a>. * * Please refer to the release_docs/INSTALL file under the top directory * of the HDF5 source code for information about installing, building, diff --git a/c++/src/H5DataSet.cpp b/c++/src/H5DataSet.cpp index 32377bc..fb9b57e 100644 --- a/c++/src/H5DataSet.cpp +++ b/c++/src/H5DataSet.cpp @@ -28,6 +28,7 @@ #include "H5OcreatProp.h" #include "H5DxferProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -90,9 +91,6 @@ DataSet::DataSet(const DataSet& original) : H5Object(), AbstractDs(), id(origina /// \c loc can be DataSet, Group, H5File, or named DataType, that /// is a datatype that has been named by DataType::commit. // Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// Jul, 2008 -// Added for application convenience. //-------------------------------------------------------------------------- DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), AbstractDs(), id(H5I_INVALID_HID) { @@ -109,9 +107,6 @@ DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, co ///\param plist - IN: Property list - default to PropList::DEFAULT ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// Jul, 2008 -// Added for application convenience. //-------------------------------------------------------------------------- DataSet::DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), AbstractDs(), id(H5I_INVALID_HID) { @@ -577,10 +572,8 @@ int DataSet::iterateElems(void* buf, const DataType& type, const DataSpace& spac ///\param size - IN: Array containing the new magnitude of each dimension ///\exception H5::DataSetIException ///\par Description -/// For more information, please see the Description section in -/// C layer Reference Manual at: -///\par -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5D.html#Dataset-Extend +/// For information, please refer to the H5Dset_extent API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataSet::extend(const hsize_t* size) const @@ -600,7 +593,6 @@ void DataSet::extend(const hsize_t* size) const ///\param space - IN: Dataspace describing memory buffer & containing selection to use ///\exception H5::DataSetIException // Programmer Binh-Minh Ribler - 2014 -// Modification //-------------------------------------------------------------------------- void DataSet::fillMemBuf(const void *fill, const DataType& fill_type, void *buf, const DataType& buf_type, const DataSpace& space) const { diff --git a/c++/src/H5DataSpace.cpp b/c++/src/H5DataSpace.cpp index 379de2f..b563da4 100644 --- a/c++/src/H5DataSpace.cpp +++ b/c++/src/H5DataSpace.cpp @@ -466,9 +466,8 @@ hssize_t DataSpace::getSelectElemNpoints () const ///\param buf - IN: List of element points selected ///\exception H5::DataSpaceIException ///\par Description -/// For more information, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectElemPointList +/// For information, please refer to the C API +/// H5Sget_select_elem_pointlist in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataSpace::getSelectElemPointlist (hsize_t startpoint, hsize_t numpoints, hsize_t *buf) const @@ -490,9 +489,8 @@ void DataSpace::getSelectElemPointlist (hsize_t startpoint, hsize_t numpoints, h /// the coordinates of the diagonally opposite corner ///\exception H5::DataSpaceIException ///\par Description -/// For more information, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectBounds +/// For information, please refer to the H5Sget_select_bounds API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataSpace::getSelectBounds (hsize_t* start, hsize_t* end) const @@ -516,9 +514,8 @@ void DataSpace::getSelectBounds (hsize_t* start, hsize_t* end) const /// specifying the coordinates of the elements being selected ///\exception H5::DataSpaceIException ///\par Description -/// For more information, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectElements +/// For information, please refer to the H5Sselect_elements API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataSpace::selectElements (H5S_seloper_t op, const size_t num_elements, const hsize_t *coord) const @@ -598,9 +595,8 @@ bool DataSpace::selectValid () const ///\param block - IN: Size of block in the hyperslab - default to \c NULL ///\exception H5::DataSpaceIException ///\par Description -/// For more information, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectHyperslab +/// For information, please refer to the H5Sselect_hyperslab API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataSpace::selectHyperslab(H5S_seloper_t op, const hsize_t *count, const hsize_t *start, const hsize_t *stride, const hsize_t *block) const diff --git a/c++/src/H5DataType.cpp b/c++/src/H5DataType.cpp index 444a77a..032937d 100644 --- a/c++/src/H5DataType.cpp +++ b/c++/src/H5DataType.cpp @@ -28,6 +28,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -96,9 +97,6 @@ DataType::DataType(const H5T_class_t type_class, size_t size) : H5Object(), enco ///\param plist - IN: Property list - default to PropList::DEFAULT ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// Jul, 2008 -// Added for application convenience. //-------------------------------------------------------------------------- DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), encoded_buf(NULL), buf_size(0) { @@ -247,6 +245,7 @@ void DataType::copy(const DataSet& dset) throw DataTypeIException(inMemFunc("copy"), "H5Tcopy failed"); } +#ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: DataType::p_decode // Purpose Returns an id of a type by decoding the binary object @@ -275,6 +274,7 @@ hid_t DataType::p_decode() const return(encoded_dtype_id); } } +#endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: DataType::decode @@ -653,8 +653,8 @@ DataType DataType::getSuper() const /// destination datatypes. ///\exception H5::DataTypeIException ///\par Description -/// For more information, please see: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-Register +/// For information, please refer to the H5Tregister API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DataType::registerFunc(H5T_pers_t pers, const char* name, const DataType& dest, H5T_conv_t func) const diff --git a/c++/src/H5DcreatProp.cpp b/c++/src/H5DcreatProp.cpp index fd3cd17..6ed77e3 100644 --- a/c++/src/H5DcreatProp.cpp +++ b/c++/src/H5DcreatProp.cpp @@ -20,6 +20,7 @@ #include "H5PropList.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -158,8 +159,8 @@ int DSetCreatPropList::getChunk(int max_ndims, hsize_t* dim) const ///\param layout - IN: Type of storage layout for raw data ///\exception H5::PropListIException ///\par Description -/// For information on valid layout types, please refer to -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetLayout +/// For information, please refer to the H5Pset_layout API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DSetCreatPropList::setLayout(H5D_layout_t layout) const @@ -233,9 +234,8 @@ void DSetCreatPropList::setDeflate(int level) const ///\par Description /// The associate C function sets an SZIP compression filter, /// H5Z_FILTER_SZIP, for a dataset. For more information about -/// SZIP and usage, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSzip +/// SZIP and usage, please refer to the H5Pset_szip API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - Jan, 2007 //-------------------------------------------------------------------------- void DSetCreatPropList::setSzip(unsigned int options_mask, unsigned int pixels_per_block) const @@ -255,9 +255,8 @@ void DSetCreatPropList::setSzip(unsigned int options_mask, unsigned int pixels_p ///\par Description /// The associate C function sets an Nbit compression filter, /// H5Z_FILTER_NBIT, for a dataset. For more information about -/// Nbit compression, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-setNbit +/// Nbit compression, please refer to the H5Pset_nbit API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - Apr, 2016 //-------------------------------------------------------------------------- void DSetCreatPropList::setNbit() const @@ -284,8 +283,7 @@ void DSetCreatPropList::setNbit() const /// according to the actual dataset datatype. ///\par /// For information on setting fill value, please refer to the -/// C layer Reference Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFillValue +/// H5Pset_fill_value API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DSetCreatPropList::setFillValue(const DataType& fvalue_type, const void* value) const @@ -534,9 +532,8 @@ bool DSetCreatPropList::allFiltersAvail() const /// ///\exception H5::PropListIException ///\par Description -/// Please refer to the Reference Manual of \c H5Pset_shuffle for -/// details. -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetShuffle +/// For information, please refer to the H5Pset_shuffle API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void DSetCreatPropList::setShuffle() const @@ -752,7 +749,8 @@ void DSetCreatPropList::getExternal(unsigned idx, size_t name_size, char* name, /// an unlimited selection ///\exception H5::PropListIException ///\par Description -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetVirtual +/// For information, please refer to the H5Pset_virtual API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - Mar, 2017 //-------------------------------------------------------------------------- void DSetCreatPropList::setVirtual(const DataSpace& vspace, const char *src_fname, const char *src_dsname, const DataSpace& sspace) const @@ -779,7 +777,8 @@ void DSetCreatPropList::setVirtual(const DataSpace& vspace, const char *src_fnam /// an unlimited selection ///\exception H5::PropListIException ///\par Description -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetVirtual +/// For information, please refer to the H5Pset_virtual API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - Mar, 2017 //-------------------------------------------------------------------------- void DSetCreatPropList::setVirtual(const DataSpace& vspace, const H5std_string src_fname, const H5std_string src_dsname, const DataSpace& sspace) const diff --git a/c++/src/H5DxferProp.cpp b/c++/src/H5DxferProp.cpp index 3a72b28..21e18e7 100644 --- a/c++/src/H5DxferProp.cpp +++ b/c++/src/H5DxferProp.cpp @@ -434,8 +434,8 @@ void DSetMemXferPropList::getVlenMemManager(H5MM_allocate_t& alloc_func, void** ///\param size - IN: Maximum size, in bytes, of the small data block. ///\exception H5::PropListIException ///\par Description -/// For detail, please refer to the C layer Reference Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSmallData +/// For detail, please refer to the H5Pset_small_data_block_size +/// API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void DSetMemXferPropList::setSmallDataBlockSize(hsize_t size) const @@ -473,9 +473,8 @@ hsize_t DSetMemXferPropList::getSmallDataBlockSize() const /// ///\exception H5::PropListIException ///\par Description -/// For information, please refer to the C layer Reference -/// Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetHyperVectorSize +/// For detail, please refer to the H5Pset_hyper_vector_size +/// API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void DSetMemXferPropList::setHyperVectorSize(size_t vector_size) const diff --git a/c++/src/H5EnumType.cpp b/c++/src/H5EnumType.cpp index 02ae5a3..91866d7 100644 --- a/c++/src/H5EnumType.cpp +++ b/c++/src/H5EnumType.cpp @@ -22,6 +22,7 @@ #include "H5DcreatProp.h" #include "H5DxferProp.h" #include "H5DataSpace.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5FaccProp.cpp b/c++/src/H5FaccProp.cpp index b414294..9e1098b 100644 --- a/c++/src/H5FaccProp.cpp +++ b/c++/src/H5FaccProp.cpp @@ -124,8 +124,8 @@ void FileAccPropList::setStdio() const ///\return A low-level driver ID which is the same ID used when the /// driver was set for the property list. The driver ID is /// only valid as long as the file driver remains registered. -/// Valid driver identifiers can be found at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetDriver +/// For detail on valid driver identifiers, please refer to the +/// H5Pget_driver API in the HDF5 C Reference Manual. ///\exception H5::PropListIException // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- @@ -146,9 +146,8 @@ hid_t FileAccPropList::getDriver() const ///\param new_driver_info - IN: Struct containing the driver-specific properites ///\exception H5::PropListIException ///\par Description -/// For a list of valid driver identifiers, please see the C -/// layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetDriver +/// For information, please refer to the H5Pset_driver API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setDriver(hid_t new_driver_id, const void *new_driver_info) const @@ -205,8 +204,7 @@ hsize_t FileAccPropList::getFamilyOffset() const ///\exception H5::PropListIException ///\par Description /// For more details on the use of \c H5FD_CORE driver, please -/// refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFaplCore +/// refer to the H5Pset_fapl_core API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setCore (size_t increment, hbool_t backing_store) const @@ -309,8 +307,8 @@ FileAccPropList FileAccPropList::getFamily(hsize_t& memb_size) const ///\param raw_ext - IN: Raw data filename extension as \c char* ///\exception H5::PropListIException ///\par Description -/// Temporary - For information, please refer to: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFaplSplit +/// For information, please refer to the H5Pset_fapl_split API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setSplit(const FileAccPropList& meta_plist, const FileAccPropList& raw_plist, const char* meta_ext, const char* raw_ext) const @@ -369,8 +367,8 @@ size_t FileAccPropList::getSieveBufSize() const ///\param bufsize - IN: Maximum size, in bytes, of data sieve buffer ///\exception H5::PropListIException ///\par Description -/// For detail on data sieving, please refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSieveBufSize +/// For more detail, please refer to the H5Pset_sieve_buf_size +/// API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setSieveBufSize(size_t bufsize) const @@ -389,8 +387,8 @@ void FileAccPropList::setSieveBufSize(size_t bufsize) const /// block allocations ///\exception H5::PropListIException ///\par Description -/// For more detail, please see the C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetMetaBlockSize +/// For information, please refer to the H5Pset_meta_block_size +/// API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setMetaBlockSize(hsize_t &block_size) const @@ -429,8 +427,8 @@ hsize_t FileAccPropList::getMetaBlockSize() const ///\param buf_size - IN: Size of the logging buffer ///\exception H5::PropListIException ///\par Description -/// For detail on \a flags, please refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFaplLog +/// For information, please refer to the H5Pset_fapl_log API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setLog(const char *logfile, unsigned flags, size_t buf_size) const @@ -486,8 +484,8 @@ void FileAccPropList::setSec2() const /// effect of a special case, forcing everything to be aligned. /// The parameter \a alignment must have a positive value. /// -/// For detail on \a setting alignment, please refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetAlignment +/// For more detail, please refer to the H5Pset_alignment API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileAccPropList::setAlignment(hsize_t threshold, hsize_t alignment) const @@ -523,8 +521,8 @@ void FileAccPropList::getAlignment(hsize_t &threshold, hsize_t &alignment) const ///\param dtype - IN: Type of data ///\exception H5::PropListIException ///\par Description -/// More details and valid values for \a dtype can be found at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetMultiType +/// For information, please refer to the H5Pset_multi_type API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- void FileAccPropList::setMultiType(H5FD_mem_t dtype) const @@ -542,8 +540,8 @@ void FileAccPropList::setMultiType(H5FD_mem_t dtype) const ///\return The data type property ///\exception H5::PropListIException ///\par Description -/// More details and possible returned values can be found at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetMultiType +/// For information, please refer to the H5Pget_multi_type API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - April, 2004 //-------------------------------------------------------------------------- H5FD_mem_t FileAccPropList::getMultiType() const @@ -643,8 +641,8 @@ H5F_close_degree_t FileAccPropList::getFcloseDegree() const /// on (1) or off (0). ///\exception H5::PropListIException ///\par Description -/// For detail on \a fapl, please refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetGCReferences +/// For information, please refer to the H5Pset_gc_references API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileAccPropList::setGcReferences(unsigned gc_ref) const @@ -694,8 +692,8 @@ unsigned FileAccPropList::getGcReferences() const /// \li \c H5F_LIBVER_18 /// \li \c H5F_LIBVER_LATEST (Default) /// -/// For more details, please refer to -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetLibverBounds +/// For more detail, please refer to the H5Pset_libver_bounds API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - March, 2015 //-------------------------------------------------------------------------- void FileAccPropList::setLibverBounds(H5F_libver_t libver_low, H5F_libver_t libver_high) const diff --git a/c++/src/H5FcreatProp.cpp b/c++/src/H5FcreatProp.cpp index 9674c0a..98a35cb 100644 --- a/c++/src/H5FcreatProp.cpp +++ b/c++/src/H5FcreatProp.cpp @@ -173,9 +173,8 @@ hsize_t FileCreatPropList::getUserblock() const ///\param sizeof_size - IN: Size of an object length in bytes. ///\exception H5::PropListIException ///\par Description -/// For information on setting sizes, please refer to the -/// C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSizes +/// For information, please refer to the H5Pset_sizes API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileCreatPropList::setSizes(size_t sizeof_addr, size_t sizeof_size) const @@ -214,8 +213,8 @@ void FileCreatPropList::getSizes(size_t& sizeof_addr, size_t& sizeof_size) const ///\param lk - IN: Symbol table node size ///\exception H5::PropListIException ///\par Description -/// For information, please see the C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSymK +/// For information, please refer to the H5Pset_sym_k API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileCreatPropList::setSymk(unsigned ik, unsigned lk) const @@ -235,8 +234,8 @@ void FileCreatPropList::setSymk(unsigned ik, unsigned lk) const /// ///\exception H5::PropListIException ///\par Description -/// For information, please see -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetSymK +/// For information, please refer to the H5Pget_sym_k API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileCreatPropList::getSymk(unsigned& ik, unsigned& lk) const @@ -256,8 +255,8 @@ void FileCreatPropList::getSymk(unsigned& ik, unsigned& lk) const ///\param ik - IN: 1/2 rank of chunked storage B-tree ///\exception H5::PropListIException ///\par Description -/// For information, please see the C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetIstoreK +/// For information, please refer to the H5Pset_istore_k API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void FileCreatPropList::setIstorek(unsigned ik) const @@ -276,8 +275,8 @@ void FileCreatPropList::setIstorek(unsigned ik) const ///\return 1/2 rank of chunked storage B-tree ///\exception H5::PropListIException ///\par Description -/// For information, please see -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetIstoreK +/// For information, please refer to the H5Pget_istore_k API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- unsigned FileCreatPropList::getIstorek() const @@ -306,8 +305,8 @@ unsigned FileCreatPropList::getIstorek() const /// changed and the existing strategy will be retained. /// If the given threshold value is zero, the property will not be /// changed and the existing threshold will be retained. -/// For information, please see the C layer Reference Manual at: -/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFileSpace +/// For information, please refer to the H5Pset_file_space_strategy +/// API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - Feb, 2017 //-------------------------------------------------------------------------- void FileCreatPropList::setFileSpaceStrategy(H5F_fspace_strategy_t strategy, hbool_t persist, hsize_t threshold) const diff --git a/c++/src/H5File.cpp b/c++/src/H5File.cpp index 3a0b54d..2c7ac51 100644 --- a/c++/src/H5File.cpp +++ b/c++/src/H5File.cpp @@ -27,6 +27,7 @@ #include "H5OcreatProp.h" #include "H5DxferProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -72,9 +73,8 @@ H5File::H5File() : Group(), id(H5I_INVALID_HID) {} /// exists, and fail, otherwise ///\par /// For info on file creation in the case of an already-open file, -/// please refer to the \b Special \b case section in the C layer -/// Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5F.html#File-Create +/// please refer to the \b Special \b case section of the H5Fcreate +/// API in the C Reference Manual. // Notes With a PGI compiler (~2012-2013,) the exception thrown by // p_get_file could not be caught in the applications. Added try // block here to catch then re-throw it. -BMR 2013/03/21 diff --git a/c++/src/H5FloatType.cpp b/c++/src/H5FloatType.cpp index 794c27d..9703149 100644 --- a/c++/src/H5FloatType.cpp +++ b/c++/src/H5FloatType.cpp @@ -20,6 +20,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5Group.cpp b/c++/src/H5Group.cpp index c0e0dd1..c4c7017 100644 --- a/c++/src/H5Group.cpp +++ b/c++/src/H5Group.cpp @@ -27,6 +27,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -123,26 +124,6 @@ Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const } //-------------------------------------------------------------------------- -// Function: Group overload constructor - dereference -// brief Given a reference, ref, to an hdf5 group, creates a Group objec -// param attr - IN: Specifying location where the referenced object is i -// param ref - IN: Reference pointer -// param ref_type - IN: Reference type - default to H5R_OBJECT -// param plist - IN: Property list - default to PropList::DEFAULT -// exception H5::ReferenceException -// Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// Mar, 2017 -// Removed in 1.10.1 because H5Location is Attribute's baseclass -// now. -BMR -//-------------------------------------------------------------------------- -/* Group::Group(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), id(H5I_INVALID_HID) -{ - id = H5Location::p_dereference(attr.getId(), ref, ref_type, plist, "constructor - by dereference"); -} - */ - -//-------------------------------------------------------------------------- // Function: Group::getNumObjs ///\brief Returns the number of objects in this group. ///\return Number of objects diff --git a/c++/src/H5IntType.cpp b/c++/src/H5IntType.cpp index f68e858..38191bc 100644 --- a/c++/src/H5IntType.cpp +++ b/c++/src/H5IntType.cpp @@ -20,6 +20,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5LcreatProp.cpp b/c++/src/H5LcreatProp.cpp new file mode 100644 index 0000000..4f8bffc --- /dev/null +++ b/c++/src/H5LcreatProp.cpp @@ -0,0 +1,146 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <string> + +#include "H5Include.h" +#include "H5Exception.h" +#include "H5IdComponent.h" +#include "H5PropList.h" +#include "H5LcreatProp.h" + +namespace H5 { + +#ifndef DOXYGEN_SHOULD_SKIP_THIS +// This DOXYGEN_SHOULD_SKIP_THIS block is a work-around approach to control +// the order of creation and deletion of the global constants. See Design Notes +// in "H5PredType.cpp" for information. + +// Initialize a pointer for the constant +LinkCreatPropList* LinkCreatPropList::DEFAULT_ = 0; + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList::getConstant +// Creates a LinkCreatPropList object representing the HDF5 constant +// H5P_LINK_CREATE, pointed to by LinkCreatPropList::DEFAULT_ +// exception H5::PropListIException +// Description +// If LinkCreatPropList::DEFAULT_ already points to an allocated +// object, throw a PropListIException. This scenario should not +// happen. +// December, 2016 +//-------------------------------------------------------------------------- +LinkCreatPropList* LinkCreatPropList::getConstant() +{ + // Tell the C library not to clean up, H5Library::termH5cpp will call + // H5close - more dependency if use H5Library::dontAtExit() + if (!IdComponent::H5dontAtexit_called) + { + (void) H5dont_atexit(); + IdComponent::H5dontAtexit_called = true; + } + + // If the constant pointer is not allocated, allocate it. Otherwise, + // throw because it shouldn't be. + if (DEFAULT_ == 0) + DEFAULT_ = new LinkCreatPropList(H5P_LINK_CREATE); + else + throw PropListIException("LinkCreatPropList::getConstant", "LinkCreatPropList::getConstant is being invoked on an allocated DEFAULT_"); + return(DEFAULT_); +} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList::deleteConstants +// Purpose: Deletes the constant object that LinkCreatPropList::DEFAULT_ +// points to. +// exception H5::PropListIException +// December, 2016 +//-------------------------------------------------------------------------- +void LinkCreatPropList::deleteConstants() +{ + if (DEFAULT_ != 0) + delete DEFAULT_; +} + +//-------------------------------------------------------------------------- +// Purpose: Constant for default property +//-------------------------------------------------------------------------- +const LinkCreatPropList& LinkCreatPropList::DEFAULT = *getConstant(); + +#endif // DOXYGEN_SHOULD_SKIP_THIS + +//-------------------------------------------------------------------------- +// Function: Default Constructor +///\brief Creates a file access property list +// December, 2016 +//-------------------------------------------------------------------------- +LinkCreatPropList::LinkCreatPropList() : PropList(H5P_LINK_CREATE) {} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList copy constructor +///\brief Copy Constructor: makes a copy of the original +///\param original - IN: LinkCreatPropList instance to copy +// December, 2016 +//-------------------------------------------------------------------------- +LinkCreatPropList::LinkCreatPropList(const LinkCreatPropList& original) : PropList(original) {} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList overloaded constructor +///\brief Creates a file access property list using the id of an +/// existing one. +// December, 2016 +//-------------------------------------------------------------------------- +LinkCreatPropList::LinkCreatPropList(const hid_t plist_id) : PropList(plist_id) {} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList::setCharEncoding +///\brief Sets the character encoding of the string. +///\exception H5::PropListIException +// March, 2018 +//-------------------------------------------------------------------------- +void LinkCreatPropList::setCharEncoding(H5T_cset_t encoding) const +{ + herr_t ret_value = H5Pset_char_encoding(id, encoding); + // Throw exception if H5Pset_char_encoding returns failure + if (ret_value < 0) + { + throw PropListIException("setCharEncoding", "H5Pset_char_encoding failed"); + } +} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList::getCharEncoding +///\brief Gets the character encoding of the string. +///\exception H5::PropListIException +// March, 2018 +//-------------------------------------------------------------------------- +H5T_cset_t LinkCreatPropList::getCharEncoding() const +{ + H5T_cset_t encoding; + herr_t ret_value = H5Pget_char_encoding(id, &encoding); + // Throw exception if H5Pget_char_encoding returns failure + if (ret_value < 0) + { + throw PropListIException("getCharEncoding", "H5Pget_char_encoding failed"); + } + return(encoding); +} + +//-------------------------------------------------------------------------- +// Function: LinkCreatPropList destructor +///\brief Noop destructor +// December, 2016 +//-------------------------------------------------------------------------- +LinkCreatPropList::~LinkCreatPropList() {} + +} // end namespace diff --git a/c++/src/H5LcreatProp.h b/c++/src/H5LcreatProp.h new file mode 100644 index 0000000..4ac2191 --- /dev/null +++ b/c++/src/H5LcreatProp.h @@ -0,0 +1,71 @@ +// C++ informative line for the emacs editor: -*- C++ -*- +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +// Class LinkCreatPropList represents the HDF5 file access property list and +// inherits from DataType. + +#ifndef __H5LinkCreatPropList_H +#define __H5LinkCreatPropList_H + +namespace H5 { + +/*! \class LinkCreatPropList + \brief Class LinkCreatPropList inherits from PropList and provides + wrappers for the HDF5 file access property list. +*/ +// Inheritance: PropList -> IdComponent +class H5_DLLCPP LinkCreatPropList : public PropList { + public: + ///\brief Default file access property list. + static const LinkCreatPropList& DEFAULT; + + // Creates a file access property list. + LinkCreatPropList(); + + ///\brief Returns this class name. + virtual H5std_string fromClass () const { return("LinkCreatPropList"); } + + // Copy constructor: creates a copy of a LinkCreatPropList object. + LinkCreatPropList(const LinkCreatPropList& original); + + // Creates a copy of an existing file access property list + // using the property list id. + LinkCreatPropList (const hid_t plist_id); + + // Sets the character encoding of the string. + void setCharEncoding(H5T_cset_t encoding) const; + + // Gets the character encoding of the string. + H5T_cset_t getCharEncoding() const; + + // Noop destructor + virtual ~LinkCreatPropList(); + +#ifndef DOXYGEN_SHOULD_SKIP_THIS + + // Deletes the global constant, should only be used by the library + static void deleteConstants(); + + private: + static LinkCreatPropList* DEFAULT_; + + // Creates the global constant, should only be used by the library + static LinkCreatPropList* getConstant(); + +#endif // DOXYGEN_SHOULD_SKIP_THIS + +}; // end of LinkCreatPropList +} // namespace H5 + +#endif // __H5LinkCreatPropList_H diff --git a/c++/src/H5Library.cpp b/c++/src/H5Library.cpp index 9293622..55f82f5 100644 --- a/c++/src/H5Library.cpp +++ b/c++/src/H5Library.cpp @@ -24,6 +24,7 @@ #include "H5OcreatProp.h" #include "H5DxferProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -110,8 +111,7 @@ void H5Library::getLibVersion(unsigned& majnum, unsigned& minnum, unsigned& reln ///\exception H5::LibraryIException ///\par Description /// For information about library version, please refer to -/// the C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5.html#Library-VersCheck +/// the H5check_version API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void H5Library::checkVersion(unsigned majnum, unsigned minnum, unsigned relnum) @@ -240,9 +240,8 @@ void H5Library::termH5cpp() ///\exception H5::LibraryIException ///\par Description /// Setting a value of -1 for a limit means no limit of that type. -/// For more information on free list limits, please refer to C -/// layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5.html#Library-SetFreeListLimits +/// For more information on free list limits, please refer to +/// the H5set_free_list_limits API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- void H5Library::setFreeListLimits(int reg_global_lim, int reg_list_lim, diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp index d0b5f9d..2dceb6e 100644 --- a/c++/src/H5Location.cpp +++ b/c++/src/H5Location.cpp @@ -12,6 +12,8 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include <string> +#include <iostream> +using namespace std; #include "H5private.h" // for HDmemset #include "H5Include.h" @@ -24,6 +26,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -230,7 +233,6 @@ void H5Location::setComment(const H5std_string& name, const H5std_string& commen /// It differs from the above function in that it doesn't take /// an object name. // Programmer Binh-Minh Ribler - Sep 2013 -// Modification //-------------------------------------------------------------------------- void H5Location::setComment(const char* comment) const { @@ -513,9 +515,6 @@ void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_t // from_func - IN: Name of the calling function // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// May 2008 - BMR -// Moved from IdComponent. //-------------------------------------------------------------------------- hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const PropList& plist, const char* from_func) { @@ -544,9 +543,6 @@ hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_ty ///\param plist - IN: Property list - default to PropList::DEFAULT ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 -// Modification -// May, 2008 -// Corrected missing parameters. - BMR //-------------------------------------------------------------------------- void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) { @@ -563,8 +559,6 @@ void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t // exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 // Modification -// May, 2008 -// Corrected missing parameters. -BMR // Mar, 2017 // Removed in 1.10.1 because H5Location is Attribute's baseclass // now. -BMR @@ -759,7 +753,53 @@ DataSpace H5Location::getRegion(void *ref, H5R_type_t ref_type) const //-------------------------------------------------------------------------- // Function: H5Location::createGroup -///\brief Creates a new group at this location. +///\brief Creates a new group at this location, which can be a file, +/// group, dataset, attribute, or named datatype. +///\param name - IN: Name of the group to create +///\param size_hint - IN: Indicates the number of bytes to reserve for +/// the names that will appear in the group +///\return Group instance +///\exception H5::FileIException/H5::GroupIException/H5::LocationException +///\par Description +/// The optional \a size_hint specifies how much file space to +/// reserve for storing the names that will appear in this new +/// group. If a non-positive value is provided for the \a size_hint +/// then a default size is chosen. +// Programmer Binh-Minh Ribler - 2000 +//-------------------------------------------------------------------------- +Group H5Location::createGroup(const char* name, const LinkCreatPropList& lcpl) const +{ + // Call C routine H5Gcreate2 to create the named group, giving the + // location id which can be a file id or a group id + hid_t group_id = H5Gcreate2(getId(), name, lcpl.getId(), H5P_DEFAULT, H5P_DEFAULT); + + // If the creation of the group failed, throw an exception + if (group_id < 0) + throwException("createGroup", "H5Gcreate2 failed"); + + // No failure, create and return the Group object + Group group; + H5Location *ptr = &group; + ptr->p_setId(group_id); + return(group); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::createGroup +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name. +// Programmer Binh-Minh Ribler - 2000 +//-------------------------------------------------------------------------- +Group H5Location::createGroup(const H5std_string& name, const LinkCreatPropList& lcpl) const +{ + return(createGroup( name.c_str(), lcpl)); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::createGroup +///\brief Creates a new group at this location, which can be a file, +/// group, dataset, attribute, or named datatype. ///\param name - IN: Name of the group to create ///\param size_hint - IN: Indicates the number of bytes to reserve for /// the names that will appear in the group @@ -804,7 +844,6 @@ Group H5Location::createGroup(const char* name, size_t size_hint) const // No failure, create and return the Group object Group group; - //group.p_setId(group_id); H5Location *ptr = &group; ptr->p_setId(group_id); return(group); @@ -942,6 +981,134 @@ DataSet H5Location::openDataSet(const H5std_string& name) const //-------------------------------------------------------------------------- // Function: H5Location::link +///\brief Creates a soft link from \a link_name to \a target_name. +///\param target_name - IN: Name of object, can be a non-existing object +///\param link_name - IN: Link name for the target name +///\param lcpl - IN: Link creation plist - default to LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default to LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +///\par Description +/// Note that both names are interpreted relative to the current +/// location. +/// For information on creating a soft link, please refer to the +/// H5Lcreate_soft APIs in the HDF5 C Reference Manual. +// March 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const char *target_name, const char *link_name, + const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + herr_t ret_value = -1; + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lcreate_soft(target_name, getId(), link_name, lcpl_id, lapl_id); + if (ret_value < 0) + throwException("link", "creating soft link failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a target_name and \a link_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const H5std_string& target_name, const H5std_string& + link_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + link(target_name.c_str(), link_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link +///\brief Creates a hard link from \a new_name to \a curr_name. +///\param curr_name - IN: Name of the existing object +///\param new_loc - IN: New group or root group +///\param new_name - IN: New name for the object +///\param lcpl - IN: Link creation plist - default to LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default to LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +///\par Description +/// Note that both names are interpreted relative to the +/// specified location. +/// For information on creating a hard link, please refer to the +/// H5Lcreate_hard APIs in the HDF5 C Reference Manual. +// March 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const char *curr_name, const Group& new_loc, + const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + herr_t ret_value = -1; + hid_t new_loc_id = new_loc.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lcreate_hard(getId(), curr_name, new_loc.getId(), new_name, H5P_DEFAULT, H5P_DEFAULT); + if (ret_value < 0) + throwException("link", "creating link failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a curr_name and \a new_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const H5std_string& curr_name, const Group& new_loc, + const H5std_string& new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + link(curr_name.c_str(), new_loc, new_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link +///\brief Creates a hard link from \a new_name to \a curr_name - can be +/// used to pass in H5L_SAME_LOC. +///\param curr_name - IN: Name of the existing object +///\param loc_id - IN: Group or root group ID, or H5L_SAME_LOC +///\param new_name - IN: New name for the link +///\param lcpl - IN: Link creation plist - default to LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default to LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +///\par Description +/// Note that both names are interpreted relative to the +/// specified location. +/// For information on creating a hard link, please refer to the +/// H5Lcreate_hard APIs in the HDF5 C Reference Manual. +// March 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const char *curr_name, const hid_t same_loc, + const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + herr_t ret_value = -1; + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lcreate_hard(getId(), curr_name, same_loc, new_name, H5P_DEFAULT, H5P_DEFAULT); + + if (ret_value < 0) + throwException("link", "creating link failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a curr_name and \a new_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::link(const H5std_string& curr_name, const hid_t same_loc, + const H5std_string& new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + link(curr_name.c_str(), same_loc, new_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::link ///\brief Creates a link of the specified type from \a new_name to /// \a curr_name. ///\param link_type - IN: Link type; possible values are @@ -955,12 +1122,14 @@ DataSet H5Location::openDataSet(const H5std_string& name) const /// Note that both names are interpreted relative to the /// specified location. /// For information on creating hard link and soft link, please -/// refer to the C layer Reference Manual at: -/// http://hdfgroup.org/HDF5/doc/RM/RM_H5L.html#Link-CreateHard and -/// http://hdfgroup.org/HDF5/doc/RM/RM_H5L.html#Link-CreateSoft +/// refer to the H5Lcreate_hard and H5Lcreate_soft APIs in the +/// HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 // Modification // 2007: QAK modified to use H5L APIs - BMR +// Mar 2018: Inadequate functionality, new hard link is only in +// H5L_SAME_LOC. This function will be retired in favor of +// its replacement. - BMR //-------------------------------------------------------------------------- void H5Location::link(H5L_type_t link_type, const char* curr_name, const char* new_name) const { @@ -1000,65 +1169,245 @@ void H5Location::link(H5L_type_t link_type, const H5std_string& curr_name, const } //-------------------------------------------------------------------------- -// Function: H5Location::unlink -///\brief Removes the specified name at this location. -///\param name - IN: Name of the object to be removed -///\exception H5::FileIException/H5::GroupIException/H5::LocationException -// Programmer Binh-Minh Ribler - 2000 -// Modification -// 2007: QAK modified to use H5L APIs - BMR +// Function: H5Location::copyLink +///\brief Copies a link from one group to another. +///\param src_name - IN: Original name +///\param dst - IN: Destination location +///\param dst_name - IN: New name +///\param lcpl - IN: Link creation plist - default LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +// March, 2018 //-------------------------------------------------------------------------- -void H5Location::unlink(const char* name) const +void H5Location::copyLink(const char *src_name, + const Group& dst, const char *dst_name, const LinkCreatPropList& lcpl, + const LinkAccPropList& lapl) const { - herr_t ret_value = H5Ldelete(getId(), name, H5P_DEFAULT); + herr_t ret_value; + hid_t dst_id = dst.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lcopy(getId(), src_name, dst_id, dst_name, lcpl_id, lapl_id); + if(ret_value < 0) + throwException("copyLink", "H5Lcopy failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::copyLink +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a src_name and \a dst_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::copyLink(const H5std_string& src_name, + const Group& dst, const H5std_string& dst_name, const LinkCreatPropList& lcpl, + const LinkAccPropList& lapl) const +{ + copyLink(src_name.c_str(), dst, dst_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::copyLink +///\brief Copies a link from a group in the same location. +///\param src_name - IN: Original name +///\param dst_name - IN: New name +///\param lcpl - IN: Link creation plist - default LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::copyLink(const char *src_name, + const char *dst_name, const LinkCreatPropList& lcpl, + const LinkAccPropList& lapl) const +{ + herr_t ret_value; + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lcopy(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id); + if(ret_value < 0) + throwException("copyLink", "H5Lcopy H5L_SAME_LOC failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::copyLink +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a src_name and \a dst_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::copyLink(const H5std_string& src_name, + const H5std_string& dst_name, const LinkCreatPropList& lcpl, + const LinkAccPropList& lapl) const +{ + copyLink(src_name.c_str(), dst_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::moveLink +///\brief Renames a link in this group and moves it to a new location. +///\param src_name - IN: Original name +///\param dst - IN: Destination location +///\param dst_name - IN: New name +///\param lcpl - IN: Link creation plist - default LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +///\note +/// Exercise care in moving groups as it is possible to render +/// data in a file inaccessible with H5Location::moveLink. Please refer +/// to the Group Interface in the HDF5 User's Guide for details. +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::moveLink(const char* src_name, const Group& dst, const char* dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + herr_t ret_value; + hid_t dst_id = dst.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lmove(getId(), src_name, dst_id, dst_name, lcpl_id, lapl_id); if (ret_value < 0) - throwException("unlink", "H5Ldelete failed"); + throwException("moveLink", "H5Lmove failed"); } //-------------------------------------------------------------------------- -// Function: H5Location::unlink +// Function: H5Location::moveLink ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an -/// \c H5std_string for \a name. -// Programmer Binh-Minh Ribler - 2000 +/// \c H5std_string for \a src_name and \a dst_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::moveLink(const H5std_string& src_name, const Group& dst, const H5std_string& dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + moveLink(src_name.c_str(), dst, dst_name.c_str(), lcpl, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::moveLink +///\brief Renames a link in this group. +///\param src_name - IN: Original name +///\param dst_name - IN: New name +///\param lcpl - IN: Link creation plist - default LinkCreatPropList::DEFAULT +///\param lapl - IN: Link access plist - default LinkAccPropList::DEFAULT +///\exception H5::FileIException or H5::GroupIException +///\note +/// Exercise care in moving groups as it is possible to render +/// data in a file inaccessible with H5Location::moveLink. Please refer +/// to the Group Interface in the HDF5 User's Guide for details. +// March, 2018 //-------------------------------------------------------------------------- -void H5Location::unlink(const H5std_string& name) const +void H5Location::moveLink(const char* src_name, const char* dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const { - unlink(name.c_str()); + herr_t ret_value; + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); + + ret_value = H5Lmove(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id); + if (ret_value < 0) + throwException("moveLink", "H5Lmove H5L_SAME_LOC failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::moveLink +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a src_name and \a dst_name. +///\exception H5::FileIException or H5::GroupIException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::moveLink(const H5std_string& src_name, const H5std_string& dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +{ + moveLink(src_name.c_str(), dst_name.c_str(), lcpl, lapl); } //-------------------------------------------------------------------------- // Function: H5Location::move -///\brief Renames an object at this location. +///\brief Renames an object at this location. - Deprecated due to inadequate functionality ///\param src - IN: Object's original name ///\param dst - IN: Object's new name ///\exception H5::FileIException/H5::GroupIException/H5::LocationException ///\note /// Exercise care in moving groups as it is possible to render /// data in a file inaccessible with H5Location::move. Please refer -/// to the Group Interface in the HDF5 User's Guide for details at: -/// https://www.hdfgroup.org/HDF5/doc/UG/HDF5_Users_Guide-Responsive%20HTML5/index.html#t=HDF5_Users_Guide%2FGroups%2FHDF5_Groups.htm -// Programmer Binh-Minh Ribler - 2000 +/// to the Group Interface in the HDF5 User's Guide for details. // Modification -// 2007: QAK modified to use H5L APIs - BMR +// 2007: QAK modified to use H5L APIs - BMR +// 2018: Will be replaced by H5Location::moveLink() -BMR //-------------------------------------------------------------------------- void H5Location::move(const char* src, const char* dst) const { - herr_t ret_value = H5Lmove(getId(), src, H5L_SAME_LOC, dst, H5P_DEFAULT, H5P_DEFAULT); - if (ret_value < 0) - throwException("move", "H5Lmove failed"); + moveLink(src, dst, LinkCreatPropList::DEFAULT, LinkAccPropList::DEFAULT); } //-------------------------------------------------------------------------- // Function: H5Location::move ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above function in that it takes an -/// \c H5std_string for \a src and \a dst. -// Programmer Binh-Minh Ribler - 2000 +/// \c H5std_string for \a src and \a dst. - Deprecated due to inadequate functionality +// Modification +// 2018: Will be replaced by H5Location::moveLink() -BMR //-------------------------------------------------------------------------- void H5Location::move(const H5std_string& src, const H5std_string& dst) const { - move(src.c_str(), dst.c_str()); + moveLink(src.c_str(), dst.c_str(), LinkCreatPropList::DEFAULT, LinkAccPropList::DEFAULT); +} + +#if 0 +//-------------------------------------------------------------------------- +// Function: H5Location::deleteLink +///\brief Removes the specified link from this group. +///\param name - IN: Name of the object to be removed +///\exception H5::FileIException/H5::GroupIException/H5::LocationException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::deleteLink(const char* name, const LinkAccPropList& lapl) const +{ + herr_t ret_value = H5Ldelete(getId(), name, H5P_DEFAULT); + if (ret_value < 0) + throwException("deleteLink", "H5Ldelete failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::deleteLink +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name. +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::deleteLink(const H5std_string& name, const LinkAccPropList& lapl) const +{ + deleteLink(name.c_str()); +} + +#endif +//-------------------------------------------------------------------------- +// Function: H5Location::unlink +///\brief Removes the specified link from this group. +///\param name - IN: Name of the object to be removed +///\exception H5::FileIException/H5::GroupIException/H5::LocationException +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::unlink(const char* name, const LinkAccPropList& lapl) const +{ + herr_t ret_value = H5Ldelete(getId(), name, lapl.getId()); + if (ret_value < 0) + throwException("unlink", "H5Ldelete failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::unlink +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a name. +// March, 2018 +//-------------------------------------------------------------------------- +void H5Location::unlink(const H5std_string& name, const LinkAccPropList& lapl) const +{ + unlink(name.c_str(), lapl); } #ifndef H5_NO_DEPRECATED_SYMBOLS @@ -1070,10 +1419,9 @@ void H5Location::move(const H5std_string& src, const H5std_string& dst) const ///\param statbuf - OUT: Buffer to return information about the object ///\exception H5::FileIException/H5::GroupIException/H5::LocationException ///\par Description -/// For more information, please refer to the C layer Reference -/// Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5G.html#Group-GetObjinfo -// Programmer Binh-Minh Ribler - 2000 +/// For information, please refer to the H5Gget_objinfo API in +/// the HDF5 C Reference Manual. +// 2000 //-------------------------------------------------------------------------- void H5Location::getObjinfo(const char* name, hbool_t follow_link, H5G_stat_t& statbuf) const { @@ -1099,8 +1447,7 @@ void H5Location::getObjinfo(const H5std_string& name, hbool_t follow_link, H5G_s ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above functions in that it doesn't have /// the paramemter \a follow_link. -// Programmer Binh-Minh Ribler - Nov, 2005 -// Note: need to modify to use H5Oget_info and H5Lget_info - BMR +// Nov, 2005 //-------------------------------------------------------------------------- void H5Location::getObjinfo(const char* name, H5G_stat_t& statbuf) const { @@ -1123,13 +1470,44 @@ void H5Location::getObjinfo(const H5std_string& name, H5G_stat_t& statbuf) const #endif /* H5_NO_DEPRECATED_SYMBOLS */ //-------------------------------------------------------------------------- +// Function: H5Location::getLinkInfo +///\brief Returns the information of the named link. +///\param link_name - IN: Symbolic link to the object +///\param size - IN: Maximum number of characters of value to be returned +///\return Name of the object +///\exception H5::FileIException/H5::GroupIException/H5::LocationException +// 2000 +//-------------------------------------------------------------------------- +H5L_info_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& lapl) const +{ + H5L_info_t linkinfo; // link info structure + + herr_t ret_value = H5Lget_info(getId(), link_name, &linkinfo, lapl.getId()); + if (ret_value < 0) + throwException("getLinkInfo", "H5Lget_info to find buffer size failed"); + + return(linkinfo); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getLinkInfo +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes an +/// \c H5std_string for \a link_name. +//-------------------------------------------------------------------------- +H5L_info_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl) const +{ + return(getLinkInfo(link_name.c_str(), lapl)); +} + +//-------------------------------------------------------------------------- // Function: H5Location::getLinkval ///\brief Returns the name of the object that the symbolic link points to. ///\param name - IN: Symbolic link to the object ///\param size - IN: Maximum number of characters of value to be returned ///\return Name of the object ///\exception H5::FileIException/H5::GroupIException/H5::LocationException -// Programmer Binh-Minh Ribler - 2000 +// 2000 //-------------------------------------------------------------------------- H5std_string H5Location::getLinkval(const char* name, size_t size) const { @@ -1435,8 +1813,8 @@ ssize_t H5Location::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size /// \li \c H5O_TYPE_GROUP /// \li \c H5O_TYPE_DATASET /// \li \c H5O_TYPE_NAMED_DATATYPE -/// Refer to the C API documentation for more details: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5O.html#Object-GetInfo +/// For information, please refer to the H5Oget_info_by_name API in +/// the HDF5 C Reference Manual. ///\exception H5::FileIException/H5::GroupIException/H5::LocationException /// Exception will be thrown when: /// - an error returned by the C API @@ -1501,8 +1879,8 @@ H5O_type_t H5Location::childObjType(const H5std_string& objname) const /// \li \c H5O_TYPE_GROUP /// \li \c H5O_TYPE_DATASET /// \li \c H5O_TYPE_NAMED_DATATYPE -/// Refer to the C API documentation for more details: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5O.html#Object-GetInfo +/// For information, please refer to the H5Oget_info_by_idx API in +/// the HDF5 C Reference Manual. ///\exception H5::FileIException/H5::GroupIException/H5::LocationException /// Exception will be thrown when: /// - an error returned by the C API @@ -1679,7 +2057,7 @@ H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx, H5std_string& type_name) cons // Programmer Binh-Minh Ribler - 2000 // Modification // August 2017 - BMR -// Keep Group::throwException and H5File::throwException to +// Keep H5Location::throwException and H5File::throwException to // maintain backward compatibility. For other subclasses, throw // LocationException. //-------------------------------------------------------------------------- diff --git a/c++/src/H5Location.h b/c++/src/H5Location.h index e5fbc84..19c49ea 100644 --- a/c++/src/H5Location.h +++ b/c++/src/H5Location.h @@ -90,6 +90,10 @@ class H5_DLLCPP H5Location : public IdComponent { // Retrieves a dataspace with the region pointed to selected. DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const; + // Create a new group with using link create property list. + Group createGroup(const char* name, const LinkCreatPropList& lcpl) const; + Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl) const; + // From CommonFG // Creates a new group at this location which can be a file // or another group. @@ -109,6 +113,9 @@ class H5_DLLCPP H5Location : public IdComponent { DataSet openDataSet(const char* name) const; DataSet openDataSet(const H5std_string& name) const; + H5L_info_t getLinkInfo(const char* link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + H5L_info_t getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + // Returns the value of a symbolic link. H5std_string getLinkval(const char* link_name, size_t size=0) const; H5std_string getLinkval(const H5std_string& link_name, size_t size=0) const; @@ -154,26 +161,95 @@ class H5_DLLCPP H5Location : public IdComponent { int iterateElems(const H5std_string& name, int *idx, H5G_iterate_t op, void *op_data); #endif /* H5_NO_DEPRECATED_SYMBOLS */ + // Creates a soft link from link_name to target_name. + void link(const char *target_name, const char *link_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void link(const H5std_string& target_name, + const H5std_string& link_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Creates a hard link from new_name to curr_name. + void link(const char *curr_name, + const Group& new_loc, const char *new_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void link(const H5std_string& curr_name, + const Group& new_loc, const H5std_string& new_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Creates a hard link from new_name to curr_name in same location. + void link(const char *curr_name, + const hid_t same_loc, const char *new_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void link(const H5std_string& curr_name, + const hid_t same_loc, const H5std_string& new_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + // Creates a link of the specified type from new_name to current_name; // both names are interpreted relative to the specified location id. + // Deprecated due to inadequate functionality. void link(H5L_type_t link_type, const char* curr_name, const char* new_name) const; void link(H5L_type_t link_type, const H5std_string& curr_name, const H5std_string& new_name) const; - // Removes the specified name at this location. - void unlink(const char* name) const; - void unlink(const H5std_string& name) const; + // Removes the specified link from this location. + void unlink(const char *link_name, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void unlink(const H5std_string& link_name, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; // Mounts the file 'child' onto this location. void mount(const char* name, const H5File& child, const PropList& plist) const; - //void mount(const char* name, H5File& child, PropList& plist) const; // removed from 1.8.18 and 1.10.1 void mount(const H5std_string& name, const H5File& child, const PropList& plist) const; - //void mount(const H5std_string& name, H5File& child, PropList& plist) const; // removed from 1.8.18 and 1.10.1 // Unmounts the file named 'name' from this parent location. void unmount(const char* name) const; void unmount(const H5std_string& name) const; + // Copies a link from a group to another. + void copyLink(const char *src_name, + const Group& dst, const char *dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void copyLink(const H5std_string& src_name, + const Group& dst, const H5std_string& dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Makes a copy of a link in the same group. + void copyLink(const char *src_name, const char *dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void copyLink(const H5std_string& src_name, + const H5std_string& dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Renames a link in this group and moves to a new location. + void moveLink(const char* src_name, + const Group& dst, const char* dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void moveLink(const H5std_string& src_name, + const Group& dst, const H5std_string& dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + + // Renames a link in this group. + void moveLink(const char* src_name, const char* dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + void moveLink(const H5std_string& src_name, + const H5std_string& dst_name, + const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) const; + // Renames an object at this location. + // Deprecated due to inadequate functionality. void move(const char* src, const char* dst) const; void move(const H5std_string& src, const H5std_string& dst) const; diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp index 3eed168..27881c4 100644 --- a/c++/src/H5Object.cpp +++ b/c++/src/H5Object.cpp @@ -23,6 +23,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -224,9 +225,8 @@ Attribute H5Object::openAttribute(const unsigned int idx) const ///\par Description /// The signature of user_op is /// void (*)(H5::H5Location&, H5std_string, void*). -/// For information, please refer to the C layer Reference Manual -/// at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5A.html#Annot-Iterate +/// For information, please refer to the H5Aiterate2 API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_data) @@ -421,7 +421,6 @@ ssize_t H5Object::getObjName(char *obj_name, size_t buf_size) const ///\return Name of the object ///\exception H5::Exception // Programmer Binh-Minh Ribler - Mar, 2014 -// Modification //-------------------------------------------------------------------------- H5std_string H5Object::getObjName() const { diff --git a/c++/src/H5OcreatProp.cpp b/c++/src/H5OcreatProp.cpp index ec6c08e..121198c 100644 --- a/c++/src/H5OcreatProp.cpp +++ b/c++/src/H5OcreatProp.cpp @@ -113,8 +113,7 @@ ObjCreatPropList::ObjCreatPropList(const hid_t plist_id) : PropList(plist_id) {} ///\par Description /// If \c max_compact is set to 0, dense storage will be used. /// For more detail about on attribute storage, please refer to the -/// C layer Reference Manual at: -/// https://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetAttrPhaseChange +/// H5Pset_attr_phase_change API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - September 2015 //-------------------------------------------------------------------------- void ObjCreatPropList::setAttrPhaseChange(unsigned max_compact, unsigned min_dense) const @@ -137,8 +136,7 @@ void ObjCreatPropList::setAttrPhaseChange(unsigned max_compact, unsigned min_den ///\par Description /// If \c max_compact is set to 0, dense storage will be used. /// For more detail about on attribute storage, please refer to the -/// C layer Reference Manual at: -/// https://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetAttrPhaseChange +/// H5Pget_attr_phase_change API in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - September 2015 //-------------------------------------------------------------------------- void ObjCreatPropList::getAttrPhaseChange(unsigned& max_compact, unsigned& min_dense) const @@ -166,8 +164,8 @@ void ObjCreatPropList::getAttrPhaseChange(unsigned& max_compact, unsigned& min_d /// tracked not indexed. Note that HDF5 currently provides no /// mechanism to turn on attribute creation order tracking at object /// creation time and to build the index later. -/// The C layer Reference Manual at can be found at: -/// https://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetAttrCreationOrder +/// For detail, please refer to the H5Pset_attr_creation_order API +/// in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - September 2015 //-------------------------------------------------------------------------- void ObjCreatPropList::setAttrCrtOrder(unsigned crt_order_flags) const @@ -188,8 +186,8 @@ void ObjCreatPropList::setAttrCrtOrder(unsigned crt_order_flags) const ///\par Description /// When no flag is set, i.e. crt_order_flags = 0, attribute /// creation order is neither tracked not indexed. -/// The C layer Reference Manual at can be found at: -/// https://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-GetAttrCreationOrder +/// For detail, please refer to the H5Pget_attr_creation_order API +/// in the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - September 2015 //-------------------------------------------------------------------------- unsigned ObjCreatPropList::getAttrCrtOrder() const diff --git a/c++/src/H5PredType.cpp b/c++/src/H5PredType.cpp index 53d525c..704a617 100644 --- a/c++/src/H5PredType.cpp +++ b/c++/src/H5PredType.cpp @@ -19,6 +19,7 @@ #include "H5PropList.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/H5StrType.cpp b/c++/src/H5StrType.cpp index d2d87e9..4c0b3d2 100644 --- a/c++/src/H5StrType.cpp +++ b/c++/src/H5StrType.cpp @@ -20,6 +20,7 @@ #include "H5OcreatProp.h" #include "H5DcreatProp.h" #include "H5DxferProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" @@ -281,8 +282,8 @@ H5T_str_t StrType::getStrpad() const ///\param strpad - IN: String padding type ///\exception H5::DataTypeIException ///\par Description -/// For detail, please refer to the C layer Reference Manual at: -/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-SetStrpad +/// For information, please refer to the H5Tset_strpad API in +/// the HDF5 C Reference Manual. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- void StrType::setStrpad(H5T_str_t strpad) const diff --git a/c++/src/H5VarLenType.cpp b/c++/src/H5VarLenType.cpp index 5b29682..188ee41 100644 --- a/c++/src/H5VarLenType.cpp +++ b/c++/src/H5VarLenType.cpp @@ -19,6 +19,7 @@ #include "H5PropList.h" #include "H5OcreatProp.h" #include "H5DcreatProp.h" +#include "H5LcreatProp.h" #include "H5LaccProp.h" #include "H5Location.h" #include "H5Object.h" diff --git a/c++/src/Makefile.am b/c++/src/Makefile.am index efe17dc..c02a9e7 100644 --- a/c++/src/Makefile.am +++ b/c++/src/Makefile.am @@ -32,27 +32,29 @@ bin_SCRIPTS=h5c++ # Source files for the library libhdf5_cpp_la_SOURCES=H5Exception.cpp H5IdComponent.cpp \ - H5DataSpace.cpp H5PropList.cpp H5Library.cpp \ - H5FaccProp.cpp H5FcreatProp.cpp H5LaccProp.cpp \ - H5DxferProp.cpp H5DcreatProp.cpp H5Location.cpp \ - H5AbstractDs.cpp H5Attribute.cpp H5Object.cpp \ - H5OcreatProp.cpp H5DataType.cpp H5AtomType.cpp \ - H5PredType.cpp H5EnumType.cpp H5IntType.cpp \ - H5FloatType.cpp H5StrType.cpp H5ArrayType.cpp \ - H5VarLenType.cpp H5CompType.cpp H5DataSet.cpp \ - H5CommonFG.cpp H5Group.cpp H5File.cpp + H5DataSpace.cpp H5PropList.cpp H5Library.cpp \ + H5FaccProp.cpp H5FcreatProp.cpp H5LcreatProp.cpp \ + H5LaccProp.cpp H5DxferProp.cpp H5DcreatProp.cpp \ + H5Location.cpp H5AbstractDs.cpp H5Attribute.cpp \ + H5Object.cpp H5OcreatProp.cpp H5DataType.cpp \ + H5AtomType.cpp H5PredType.cpp H5EnumType.cpp \ + H5IntType.cpp H5FloatType.cpp H5StrType.cpp \ + H5ArrayType.cpp H5VarLenType.cpp H5CompType.cpp \ + H5DataSet.cpp H5CommonFG.cpp H5Group.cpp H5File.cpp # HDF5 C++ library depends on HDF5 Library. libhdf5_cpp_la_LIBADD=$(LIBHDF5) # Public headers -include_HEADERS=H5Cpp.h H5AbstractDs.h H5AtomType.h H5Attribute.h H5Classes.h \ - H5CommonFG.h H5CompType.h H5DataSet.h H5DataSpace.h H5DataType.h \ - H5OcreatProp.h H5DcreatProp.h H5DxferProp.h H5EnumType.h \ - H5Exception.h H5FaccProp.h H5FcreatProp.h H5File.h H5FloatType.h \ - H5Group.h H5IdComponent.h H5Include.h H5IntType.h H5LaccProp.h \ - H5Library.h H5Location.h H5Object.h H5PredType.h H5PropList.h \ - H5StrType.h H5CppDoc.h H5ArrayType.h H5VarLenType.h +include_HEADERS=H5Cpp.h H5AbstractDs.h H5AtomType.h H5Attribute.h \ + H5Classes.h H5CommonFG.h H5CompType.h H5DataSet.h \ + H5DataSpace.h H5DataType.h H5OcreatProp.h H5DcreatProp.h\ + H5DxferProp.h H5EnumType.h H5Exception.h H5FaccProp.h \ + H5FcreatProp.h H5File.h H5FloatType.h H5Group.h \ + H5IdComponent.h H5Include.h H5IntType.h H5LcreatProp.h \ + H5LaccProp.h H5Library.h H5Location.h H5Object.h \ + H5PredType.h H5PropList.h H5StrType.h H5CppDoc.h \ + H5ArrayType.h H5VarLenType.h # h5c++ and libhdf5.settings are generated during configure. Remove only when # distclean. diff --git a/c++/src/cpp_doc_config b/c++/src/cpp_doc_config index be77db7..3654e28 100644 --- a/c++/src/cpp_doc_config +++ b/c++/src/cpp_doc_config @@ -32,7 +32,7 @@ DOXYFILE_ENCODING = UTF-8 # title of most generated pages and in a few other places. # The default value is: My Project. -PROJECT_NAME = "HDF5 C++ API" +PROJECT_NAME = # The PROJECT_NUMBER tag can be used to enter a project or revision number. This # could be handy for archiving the generated documentation or if some version @@ -51,7 +51,7 @@ PROJECT_BRIEF = # and the maximum width should not exceed 200 pixels. Doxygen will copy the logo # to the output directory. -PROJECT_LOGO = ./header_files/hdf_logo.jpg +PROJECT_LOGO = # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path # into which the generated documentation will be written. If a relative path is diff --git a/c++/src/footer.html b/c++/src/footer.html index ba37ee7..5ad9b7c 100644 --- a/c++/src/footer.html +++ b/c++/src/footer.html @@ -11,8 +11,8 @@ </address> </td><td width="5%"> </td> <td align="right"> - <a href="https://www.hdfgroup.org/HDF5/doc/Copyright.html">Copyright</a> by - <a href="https://www.hdfgroup.org">The HDF Group</a> + Copyright by + The HDF Group <br> and the Board of Trustees of the University of Illinois </td> diff --git a/c++/test/CMakeLists.txt b/c++/test/CMakeLists.txt index 5194865..b4fb0fc 100644 --- a/c++/test/CMakeLists.txt +++ b/c++/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_CPP_TEST) # -------------------------------------------------------------------- # Notes: When creating unit test executables they should be prefixed diff --git a/c++/test/tlinks.cpp b/c++/test/tlinks.cpp index e348d64..b8560aa 100644 --- a/c++/test/tlinks.cpp +++ b/c++/test/tlinks.cpp @@ -323,11 +323,9 @@ static const char *FILENAME[] = { * Purpose Test building a file with assorted links. * * Return Success: 0 - * * Failure: -1 * - * Programmer Binh-Minh Ribler - * October 16, 2009 + * October 16, 2009 *------------------------------------------------------------------------- */ static void test_basic_links(hid_t fapl_id, hbool_t new_format) @@ -434,7 +432,369 @@ static void test_basic_links(hid_t fapl_id, hbool_t new_format) { issue_fail_msg("test_basic_links()", __LINE__, __FILE__, E.getCDetailMsg()); } -} +} // test_basic_links + + +/*------------------------------------------------------------------------- + * Function: test_lcpl + * + * Purpose: Tests link creation property lists, specifically, the + * character encoding property. + * + * Return: Success: 0 + * Failure: number of errors + * March, 2018 + *------------------------------------------------------------------------- + */ +const H5std_string GROUP1NAME("First_group"); +const H5std_string GROUP2NAME("Second_group"); +static void +test_lcpl(hid_t fapl_id, hbool_t new_format) +{ + H5L_info_t linfo; + char filename[1024]; + hsize_t dims[2]; + + if(new_format) + SUBTEST("Link creation property lists (w/new group format)") + else + SUBTEST("Link creation property lists") + + try + { + FileAccPropList fapl(fapl_id); + + // Create a new file. + h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename); + H5File file(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl); + + // Create and link a group with the default LCPL. + Group grp_1(file.createGroup(GROUP1NAME)); + grp_1.close(); + + // Check that its character encoding is the default. + linfo = file.getLinkInfo(GROUP1NAME); + if(linfo.cset != H5T_CSET_ASCII) + throw InvalidActionException("H5Lget_info", "Character encoding is not default"); + + // Create and commit a datatype with the default LCPL. + IntType dtype(PredType::NATIVE_INT); + dtype.commit(file, "/type"); + dtype.close(); + + // Check that its character encoding is the default. + linfo = file.getLinkInfo("/type"); + verify_val(linfo.cset, H5T_CSET_ASCII, "Character encoding is not default", __LINE__, __FILE__); + + // Create a simple dataspace. + dims[0] = H5L_DIM1; + dims[1] = H5L_DIM2; + DataSpace dspace(2 ,dims); + + // Create a dataset using the default LCPL. + DataSet dset(file.createDataSet("/dataset", PredType::NATIVE_INT, dspace)); + dset.close(); + + // Check that its character encoding is the default. + linfo = file.getLinkInfo("/dataset"); + verify_val(linfo.cset, H5T_CSET_ASCII, "Character encoding is not default", __LINE__, __FILE__); + + // Create a link creation property list with the UTF-8 character encoding. + LinkCreatPropList lcpl; + lcpl.setCharEncoding(H5T_CSET_UTF8); + + // Create and link a group with the new LCPL. + Group grp_2(file.createGroup(GROUP2NAME, lcpl)); + grp_2.close(); + + // Check that its character encoding is UTF-8. + linfo = file.getLinkInfo(GROUP2NAME); + verify_val(linfo.cset, H5T_CSET_UTF8, "Character encoding is not UTF-8", __LINE__, __FILE__); + + PASSED(); + } // end of try block + catch (Exception& E) + { + issue_fail_msg("test_num_links()", __LINE__, __FILE__, E.getCDetailMsg()); + } +} // end test_lcpl() + + +/*------------------------------------------------------------------------- + * Function: test_move + * + * Purpose: Tests wrappers of H5Lmove() + * + * Return: Success: 0 + * Failure: number of errors + * March, 2018 + *------------------------------------------------------------------------- + */ +static void +test_move(hid_t fapl_id, hbool_t new_format) +{ + char filename[1024]; + + if(new_format) + SUBTEST("Group::moveLink (w/new group format)") + else + SUBTEST("Group::moveLink") + + try + { + FileAccPropList fapl(fapl_id); + + // Create two new files + h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename); + H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl); + h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename); + H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl); + + // Create groups in first file + Group grp_1(file_a.createGroup(GROUP1NAME)); + Group grp_2(file_a.createGroup(GROUP2NAME)); + Group grp_move(grp_1.createGroup("group_move")); + + // Create hard and soft links + grp_1.link(H5L_TYPE_HARD, "group_move", "hard"); + grp_2.link(H5L_TYPE_SOFT, "/First_group/group_copy", "soft"); + + // Move a group across files, should fail + try { + grp_1.moveLink("group_move", file_b, "group_new_name"); + + // Should throw an exception but didn't + H5_FAILED(); + cerr << " Group group_move should not be moved across files" << endl; + } catch (Exception& E) { + // expected + } + + // Move a soft link across files, should succeed + grp_2.moveLink("soft", file_b, "soft_new_name"); + if(file_b.exists("soft_new_name") != TRUE) + throw InvalidActionException("H5File::exists", "grp1/soft doesn't exist"); + + // Move a group across groups in the same file while renaming it + grp_1.moveLink("group_move", grp_2, "group_new_name"); + + // Open the group just moved to the new location. */ + Group moved_grp = grp_2.openGroup("group_new_name"); + moved_grp.close(); + + // Verify that the group is no longer in the original location + try { + moved_grp = grp_1.openGroup("group_move"); + + // Should throw an exception but didn't + H5_FAILED(); + cerr << " Group group_move should not be in original location" << endl; + } catch (Exception& E) { + // expected + } + + // Use H5Lmove to rename a group without moving it + H5std_string new_name("group_new_name"); + H5std_string newer_name("group_newer_name"); + grp_2.moveLink(new_name, newer_name); + + // Open the group + moved_grp = grp_2.openGroup("group_newer_name"); + moved_grp.close(); + + // Use H5Lmove to move a group without renaming it + grp_2.moveLink(newer_name, grp_1, newer_name); + + // Open the group + moved_grp = grp_1.openGroup("group_newer_name"); + moved_grp.close(); + + // Move the group while giving long paths + file_a.moveLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name"); + + // Open the group just moved to the new location + moved_grp = grp_2.openGroup("group_newest_name"); + moved_grp.close(); + + // Verify that the groups are not in previous locations + try { + moved_grp = grp_1.openGroup("group_newer_name"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_newer_name should not be in GROUP1NAME" << endl; + } catch (Exception& E) { + // expected + } + try { + moved_grp = grp_2.openGroup("group_newer_name"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_newer_name should not be in GROUP2NAME" << endl; + } catch (Exception& E) { + // expected + } + try { + moved_grp = grp_2.openGroup("group_new_name"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_new_name should not be in GROUP2NAME" << endl; + } catch (Exception& E) { + // expected + } + try { + moved_grp = grp_1.openGroup("group_copy"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_copy should not be in GROUP1NAME" << endl; + } catch (Exception& E) { + // expected + } + PASSED(); + } // end of try block + catch (Exception& E) + { + issue_fail_msg("test_num_links()", __LINE__, __FILE__, E.getCDetailMsg()); + } +} // test_move + +/*------------------------------------------------------------------------- + * Function: test_copy + * + * Purpose: Tests wrappers of H5Lcopy() + * + * Return: Success: 0 + * Failure: number of errors + * March, 2018 + *------------------------------------------------------------------------- + */ +static void test_copy(hid_t fapl_id, hbool_t new_format) +{ + char filename[1024]; + + if(new_format) + SUBTEST("Group::copyLink (w/new group format)") + else + SUBTEST("Group::copyLink") + + try + { + // Create two new files + h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename); + H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id); + h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename); + H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id); + + // Create groups in first file + Group grp_1(file_a.createGroup(GROUP1NAME)); + Group grp_2(file_a.createGroup(GROUP2NAME)); + Group grp_move(grp_1.createGroup("group_copy")); + + // Create hard and soft links + grp_1.link("group_copy", H5L_SAME_LOC, "hard"); + grp_2.link("/First_group/group_copy", "soft"); + + // Copy a group across files, should fail + try { + grp_1.copyLink("group_copy", file_b, "group_new_name"); + } catch (Exception& E) { + // expected + } + + // Copy a soft link across files, should succeed + grp_2.copyLink("soft", file_b, "soft_new_name"); + if (file_b.exists("soft_new_name") != TRUE) + throw InvalidActionException("H5File::exists", "soft_new_name doesn't exist"); + + // Move a group across groups in the same file while renaming it + H5std_string copy_name("group_copy"); + H5std_string new_name("group_new_name"); + grp_1.copyLink(copy_name, grp_2, new_name); + + // Open the group just moved to the new location. + Group moved_grp(grp_2.openGroup("group_new_name")); + moved_grp.close(); + + // Verify that the group is also in the original location + moved_grp = grp_1.openGroup("group_copy"); + moved_grp.close(); + + // Create a group in the same location with a different name + grp_2.copyLink("group_new_name", "group_newer_name"); + + // Open the group + moved_grp = grp_2.openGroup("group_newer_name"); + moved_grp.close(); + + // Verify that the group is also in the original location + moved_grp = grp_2.openGroup("group_new_name"); + moved_grp.close(); + + // Use H5Lcopy to copy to a different location with the same name + grp_2.copyLink("group_newer_name", grp_1, "group_newer_name"); + + // Open the group + moved_grp = grp_1.openGroup("group_newer_name"); + moved_grp.close(); + + // Verify that the group is still in the previous location + moved_grp = grp_2.openGroup("group_new_name"); + moved_grp.close(); + + // Copy the group while giving long paths + file_a.copyLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name"); + + // Open the newest group just moved to the new location + moved_grp = grp_2.openGroup("group_newest_name"); + moved_grp.close(); + + // Verify that the group is still in all previous original locations + moved_grp = grp_1.openGroup("group_newer_name"); + moved_grp.close(); + + moved_grp = grp_2.openGroup("group_newer_name"); + moved_grp.close(); + + moved_grp = grp_2.openGroup("group_new_name"); + moved_grp.close(); + + moved_grp = grp_1.openGroup("group_copy"); + moved_grp.close(); + + // Delete "group_newer_name" from group 2, then try to open it. + grp_2.unlink("group_newer_name"); + try { + moved_grp = grp_2.openGroup("group_newer_name"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_newer_name should not be in GROUP2NAME" << endl; + } catch (Exception& E) { + // expected + } + + // Delete "group_copy" from group 1, then try to open it. + grp_1.unlink("group_copy"); + try { + moved_grp = grp_1.openGroup("group_copy"); + moved_grp.close(); + + H5_FAILED(); // Should throw an exception but didn't + cerr << " Group group_copy should not be in GROUP1NAME" << endl; + } catch (Exception& E) { + // expected + } + + PASSED(); + } // end of try block + catch (Exception& E) + { + issue_fail_msg("test_num_links()", __LINE__, __FILE__, E.getCDetailMsg()); + } +} // test_copy /*------------------------------------------------------------------------- @@ -443,11 +803,9 @@ static void test_basic_links(hid_t fapl_id, hbool_t new_format) * Purpose Test setting and getting limit of number of links * * Return Success: 0 - * * Failure: -1 * - * Programmer Binh-Minh Ribler - * October 16, 2009 + * October 16, 2009 *------------------------------------------------------------------------- */ static void test_num_links(hid_t fapl_id, hbool_t new_format) @@ -491,8 +849,7 @@ static void test_num_links(hid_t fapl_id, hbool_t new_format) * * Return None * - * Programmer Binh-Minh Ribler - * October 16, 2009 + * October 16, 2009 *------------------------------------------------------------------------- */ extern "C" @@ -516,9 +873,10 @@ void test_links() if((fapl2_id = H5Pcopy(fapl_id)) < 0) throw Exception("test_links", "H5Pcopy failed"); - /* Set the "use the latest version of the format" bounds for creating objects in the file */ + /* Set the "use the latest version of the format" bounds for creating + objects in the file */ if(H5Pset_libver_bounds(fapl2_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) - throw Exception("test_links", "H5Pset_libver_bounds failed"); + throw Exception("test_links", "H5Pset_libver_bounds failed"); /* Loop over using new group format */ for(new_format = FALSE; new_format <= TRUE; new_format++) @@ -534,124 +892,11 @@ void test_links() /* General tests... (on both old & new format groups */ // FileAccPropList may be passed in instead of fapl id test_basic_links(my_fapl_id, new_format); -#if 0 -// these tests are from the C test links.c and left here for future -// implementation of H5L API - nerrors += test_basic_links(fapl_id, new_format) < 0 ? 1 : 0; - nerrors += cklinks(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += new_links(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += ck_new_links(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += long_links(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += toomany(my_fapl, new_format) < 0 ? 1 : 0; - - /* Test new H5L link creation routine */ - nerrors += test_lcpl(my_fapl, new_format); - nerrors += test_move(my_fapl, new_format); - nerrors += test_copy(my_fapl, new_format); - nerrors += test_move_preserves(my_fapl, new_format); -#ifndef H5_NO_DEPRECATED_SYMBOLS - nerrors += test_deprec(my_fapl, new_format); -#endif /* H5_NO_DEPRECATED_SYMBOLS */ - nerrors += external_link_root(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_path(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_mult(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_self(envval, my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_pingpong(envval, my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_toomany(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_dangling(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_recursive(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_query(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_unlink_compact(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_unlink_dense(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_move(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_ride(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_closing(envval, my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_endian(new_format) < 0 ? 1 : 0; - nerrors += external_link_strong(my_fapl, new_format) < 0 ? 1 : 0; - - /* tests for external link */ - nerrors += external_link_env(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_prefix(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_abs_mainpath(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_rel_mainpath(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_cwd(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_abstar(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_abstar_cur(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_reltar(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_chdir(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_set_elink_fapl1(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_set_elink_fapl2(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_set_elink_fapl3(new_format) < 0 ? 1 : 0; - nerrors += external_set_elink_acc_flags(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_set_elink_cb(my_fapl, new_format) < 0 ? 1 : 0; - -#ifdef H5_HAVE_WINDOW_PATH - nerrors += external_link_win1(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win2(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win3(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win4(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win5(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win6(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win7(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win8(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += external_link_win9(my_fapl, new_format) < 0 ? 1 : 0; -#endif - /* These tests assume that external links are a form of UD links, - * so assume that everything that passed for external links - * above has already been tested for UD links. - */ - if(new_format == TRUE) { - nerrors += ud_hard_links(fapl2) < 0 ? 1 : 0; /* requires new format groups */ - nerrors += ud_link_reregister(fapl2) < 0 ? 1 : 0; /* requires new format groups */ - } /* end if */ - - nerrors += ud_callbacks(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += ud_link_errors(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += lapl_udata(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += lapl_nlinks(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += linkinfo(my_fapl, new_format) < 0 ? 1 : 0; - - /* Misc. extra tests, useful for both new & old format files */ - nerrors += link_visit(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += link_visit_by_name(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += obj_visit(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += obj_visit_by_name(my_fapl, new_format) < 0 ? 1 : 0; - nerrors += obj_visit_stop(my_fapl, new_format) < 0 ? 1 : 0; - - /* Keep this test last, it's testing files that are used above */ - /* do not do this for files used by external link tests */ - nerrors += check_all_closed(my_fapl, new_format, EXTSTOP) < 0 ? 1 : 0; -#endif // 0 + test_move(my_fapl_id, new_format); + test_copy(my_fapl_id, new_format); + test_lcpl(my_fapl_id, new_format); } /* end for */ -#if 0 - /* New group revision feature tests */ - nerrors += corder_create_empty(fapl2) < 0 ? 1 : 0; -/* XXX: when creation order indexing is fully working, go back and add checks -* to these tests to make certain that the creation order values are -* correct. -*/ - nerrors += corder_create_compact(fapl2) < 0 ? 1 : 0; - nerrors += corder_create_dense(fapl2) < 0 ? 1 : 0; - nerrors += corder_transition(fapl2) < 0 ? 1 : 0; - nerrors += corder_delete(fapl2) < 0 ? 1 : 0; - nerrors += link_info_by_idx(fapl2) < 0 ? 1 : 0; - nerrors += delete_by_idx(fapl2) < 0 ? 1 : 0; - nerrors += link_iterate(fapl2) < 0 ? 1 : 0; - nerrors += open_by_idx(fapl2) < 0 ? 1 : 0; - nerrors += object_info(fapl2) < 0 ? 1 : 0; - nerrors += group_info(fapl2) < 0 ? 1 : 0; - nerrors += timestamps(fapl2) < 0 ? 1 : 0; - - /* Test new API calls on old-style groups */ - nerrors += link_info_by_idx_old(fapl) < 0 ? 1 : 0; - nerrors += delete_by_idx_old(fapl) < 0 ? 1 : 0; - nerrors += link_iterate_old(fapl) < 0 ? 1 : 0; - nerrors += open_by_idx_old(fapl) < 0 ? 1 : 0; - nerrors += object_info_old(fapl) < 0 ? 1 : 0; - nerrors += group_info_old(fapl) < 0 ? 1 : 0; - -#endif /* Close 2nd FAPL */ H5Pclose(fapl2_id); @@ -683,5 +928,9 @@ extern "C" void cleanup_links() { HDremove(FILENAME[0]); + HDremove(FILENAME[1]); } + + + diff --git a/config/cmake/CTestScript.cmake b/config/cmake/CTestScript.cmake index 27ae3a0..0269ba8 100755 --- a/config/cmake/CTestScript.cmake +++ b/config/cmake/CTestScript.cmake @@ -9,7 +9,7 @@ # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR) +cmake_minimum_required (VERSION 3.10) ######################################################## # For any comments please contact cdashhelp@hdfgroup.org # diff --git a/config/cmake/HDF518_Examples.cmake.in b/config/cmake/HDF518_Examples.cmake.in index 0e81217..1f4f479 100644 --- a/config/cmake/HDF518_Examples.cmake.in +++ b/config/cmake/HDF518_Examples.cmake.in @@ -9,7 +9,7 @@ # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR) +cmake_minimum_required (VERSION 3.10) ############################################################################################################### # This script will build and run the examples from a folder # Execute from a command line: diff --git a/config/cmake/HDF5_Examples.cmake.in b/config/cmake/HDF5_Examples.cmake.in index 6453b16..eb57685 100644 --- a/config/cmake/HDF5_Examples.cmake.in +++ b/config/cmake/HDF5_Examples.cmake.in @@ -9,7 +9,7 @@ # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR) +cmake_minimum_required (VERSION 3.10) ############################################################################################################### # This script will build and run the examples from a folder # Execute from a command line: diff --git a/config/cmake/UseJava.cmake b/config/cmake/UseJava.cmake index c70f52e..60b1758 100644 --- a/config/cmake/UseJava.cmake +++ b/config/cmake/UseJava.cmake @@ -19,6 +19,7 @@ # [VERSION version] # [OUTPUT_NAME name] # [OUTPUT_DIR dir] +# [GENERATE_NATIVE_HEADERS target [DESTINATION dir]] # ) # # This command creates a <target_name>.jar. It compiles the given @@ -34,6 +35,14 @@ # The default OUTPUT_DIR can also be changed by setting the variable # CMAKE_JAVA_TARGET_OUTPUT_DIR. # +# Optionally, using option GENERATE_NATIVE_HEADERS, native header files can be generated +# for methods declared as native. These files provide the connective glue that allow your +# Java and C code to interact. An INTERFACE target will be created for an easy usage +# of generated files. Sub-option DESTINATION can be used to specify output directory for +# generated header files. +# +# GENERATE_NATIVE_HEADERS option requires, at least, version 1.8 of the JDK. +# # Additional instructions: # # :: @@ -167,6 +176,22 @@ # # # +# :: +# +# For an optimum usage of option GENERATE_NATIVE_HEADERS, it is recommended to +# include module JNI before any call to add_jar. The produced target for native +# headers can then be used to compile C/C++ sources with command +# target_link_libraries. +# +# +# :: +# +# find_package(JNI) +# add_jar(foo foo.java GENERATE_NATIVE_HEADERS foo-native) +# add_library(bar bar.cpp) +# target_link_libraries(bar PRIVATE foo-native) +# +# # Target Properties: # # :: @@ -358,6 +383,10 @@ # Create C header files from java classes. These files provide the connective glue # that allow your Java and C code to interact. # +# This command will no longer be supported starting with version 1.10 of the JDK due +# to the `suppression of javah tool <http://openjdk.java.net/jeps/313>`_. +# Command ``add_jar(GENERATE_NATIVE_HEADERS)`` must be used instead. +# # There are two main signatures for create_javah. The first signature # returns generated files through variable specified by GENERATED_FILES option: # @@ -449,7 +478,7 @@ function(add_jar _TARGET_NAME) cmake_parse_arguments(_add_jar "" "VERSION;OUTPUT_DIR;OUTPUT_NAME;ENTRY_POINT;MANIFEST" - "SOURCES;INCLUDE_JARS" + "SOURCES;INCLUDE_JARS;GENERATE_NATIVE_HEADERS" ${ARGN} ) @@ -495,6 +524,31 @@ function(add_jar _TARGET_NAME) get_filename_component (_MANIFEST_VALUE "${_add_jar_MANIFEST}" ABSOLUTE) endif () + unset (_GENERATE_NATIVE_HEADERS) + if (_add_jar_GENERATE_NATIVE_HEADERS) + # Raise an error if JDK version is less than 1.8 because javac -h is not supported + # by earlier versions. + if ("${Java_VERSION}" VERSION_LESS 1.8) + message (FATAL_ERROR "ADD_JAR: GENERATE_NATIVE_HEADERS is not supported with this version of Java.") + endif() + cmake_parse_arguments (_add_jar_GENERATE_NATIVE_HEADERS "" "DESTINATION" "" ${_add_jar_GENERATE_NATIVE_HEADERS}) + if (NOT _add_jar_GENERATE_NATIVE_HEADERS_UNPARSED_ARGUMENTS) + message (FATAL_ERROR "ADD_JAR: GENERATE_NATIVE_HEADERS: missing required argument.") + endif() + list (LENGTH _add_jar_GENERATE_NATIVE_HEADERS_UNPARSED_ARGUMENTS length) + if (length GREATER 1) + list (REMOVE_AT _add_jar_GENERATE_NATIVE_HEADERS_UNPARSED_ARGUMENTS 0) + message (FATAL_ERROR "ADD_JAR: GENERATE_NATIVE_HEADERS: ${_add_jar_GENERATE_NATIVE_HEADERS_UNPARSED_ARGUMENTS}: unexpected argument(s).") + endif() + if (NOT _add_jar_GENERATE_NATIVE_HEADERS_DESTINATION) + set (_add_jar_GENERATE_NATIVE_HEADERS_DESTINATION "${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${_TARGET_NAME}.dir/native_headers") + endif() + + set (_GENERATE_NATIVE_HEADERS_TARGET ${_add_jar_GENERATE_NATIVE_HEADERS_UNPARSED_ARGUMENTS}) + set (_GENERATE_NATIVE_HEADERS_OUTPUT_DIR "${_add_jar_GENERATE_NATIVE_HEADERS_DESTINATION}") + set (_GENERATE_NATIVE_HEADERS -h "${_GENERATE_NATIVE_HEADERS_OUTPUT_DIR}") + endif() + if (LIBRARY_OUTPUT_PATH) set(CMAKE_JAVA_LIBRARY_OUTPUT_PATH ${LIBRARY_OUTPUT_PATH}) else () @@ -626,6 +680,7 @@ function(add_jar _TARGET_NAME) ${CMAKE_JAVA_COMPILE_FLAGS} -classpath "${CMAKE_JAVA_INCLUDE_PATH_FINAL}" -d ${CMAKE_JAVA_CLASS_OUTPUT_PATH} + ${_GENERATE_NATIVE_HEADERS} ${_JAVA_SOURCES_FILELISTS} COMMAND ${CMAKE_COMMAND} -E touch ${CMAKE_JAVA_CLASS_OUTPUT_PATH}/java_compiled_${_TARGET_NAME} DEPENDS ${_JAVA_COMPILE_FILES} ${_JAVA_COMPILE_FILELISTS} ${_JAVA_COMPILE_DEPENDS} @@ -736,6 +791,17 @@ function(add_jar _TARGET_NAME) ${CMAKE_JAVA_CLASS_OUTPUT_PATH} ) + if (_GENERATE_NATIVE_HEADERS) + # create an INTERFACE library encapsulating include directory for generated headers + add_library (${_GENERATE_NATIVE_HEADERS_TARGET} INTERFACE) + target_include_directories (${_GENERATE_NATIVE_HEADERS_TARGET} INTERFACE + "${_GENERATE_NATIVE_HEADERS_OUTPUT_DIR}" + ${JNI_INCLUDE_DIRS}) + # this INTERFACE library depends on jar generation + add_dependencies (${_GENERATE_NATIVE_HEADERS_TARGET} ${_TARGET_NAME}) + + set_property (DIRECTORY PROPERTY ADDITIONAL_MAKE_CLEAN_FILES "${_GENERATE_NATIVE_HEADERS_OUTPUT_DIR}") + endif() endfunction() function(INSTALL_JAR _TARGET_NAME) @@ -1307,6 +1373,12 @@ function(create_javadoc _target) endfunction() function (create_javah) + if ("${Java_VERSION}" VERSION_GREATER_EQUAL 1.10) + message (FATAL_ERROR "create_javah: not supported with this Java version. Use add_jar(GENERATE_NATIVE_HEADERS) instead.") + elseif ("${Java_VERSION}" VERSION_GREATER_EQUAL 1.8) + message (DEPRECATION "create_javah: this command will no longer be supported starting with version 1.10 of JDK. Update your project by using command add_jar(GENERATE_NATIVE_HEADERS) instead.") + endif() + cmake_parse_arguments(_create_javah "" "TARGET;GENERATED_FILES;OUTPUT_NAME;OUTPUT_DIR" diff --git a/config/cmake/libh5cc.in b/config/cmake/libh5cc.in new file mode 100755 index 0000000..f462d56 --- /dev/null +++ b/config/cmake/libh5cc.in @@ -0,0 +1,32 @@ +#! /bin/sh +## +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +## + +prg=$0 +if [ ! -e "$prg" ]; then + case $prg in + (*/*) exit 1;; + (*) prg=$(command -v -- "$prg") || exit;; + esac +fi +dir=$( + cd -P -- "$(dirname -- "$prg")/.." && pwd -P +) || exit +prg=$dir/$(basename -- "$prg") || exit + +printf '%s\n' "$prg" +printf 'dir is %s\n' "$dir" + +export PKG_CONFIG_PATH=$dir/lib/pkgconfig + +@_PKG_CONFIG_COMPILER@ `pkg-config --define-variable=prefix=$dir --cflags --libs @_PKG_CONFIG_LIBNAME@-@_PKG_CONFIG_VERSION@` $@ diff --git a/config/cmake/libhdf5.pc.in b/config/cmake/libhdf5.pc.in new file mode 100755 index 0000000..4a2ebaa --- /dev/null +++ b/config/cmake/libhdf5.pc.in @@ -0,0 +1,14 @@ +prefix=@_PKG_CONFIG_PREFIX@ +exec_prefix=@_PKG_CONFIG_EXEC_PREFIX@ +libdir=@_PKG_CONFIG_LIBDIR@ +includedir=@_PKG_CONFIG_INCLUDEDIR@ + +Name: @_PKG_CONFIG_LIBNAME@ +Description: HDF5 (Hierarchical Data Format 5) Software Library +Version: @_PKG_CONFIG_VERSION@ + +Cflags: -I${includedir} +Libs: -L${libdir} @_PKG_CONFIG_SH_LIBS@ +Requires: @_PKG_CONFIG_REQUIRES@ +Libs.private: @_PKG_CONFIG_LIBS_PRIVATE@ @_PKG_CONFIG_LIBS@ +Requires.private: @_PKG_CONFIG_REQUIRES_PRIVATE@ diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake index cfad6f1..670196b 100755 --- a/config/cmake/scripts/CTestScript.cmake +++ b/config/cmake/scripts/CTestScript.cmake @@ -9,7 +9,7 @@ # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR)
+cmake_minimum_required (VERSION 3.10)
########################################################
# This dashboard is maintained by The HDF Group
# For any comments please contact cdashhelp@hdfgroup.org
diff --git a/config/cmake/scripts/HDF5config.cmake b/config/cmake/scripts/HDF5config.cmake index 8f219f3..3dddbca 100755 --- a/config/cmake/scripts/HDF5config.cmake +++ b/config/cmake/scripts/HDF5config.cmake @@ -15,7 +15,7 @@ ### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log ###
#############################################################################################
-cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR)
+cmake_minimum_required (VERSION 3.10)
############################################################################
# Usage:
# ctest -S HDF5config.cmake,OPTION=VALUE -C Release -VV -O test.log
diff --git a/config/cmake_ext_mod/FindMPI.cmake b/config/cmake_ext_mod/FindMPI.cmake deleted file mode 100644 index d01dd35..0000000 --- a/config/cmake_ext_mod/FindMPI.cmake +++ /dev/null @@ -1,1514 +0,0 @@ -# Distributed under the OSI-approved BSD 3-Clause License. See https://cmake.org/licensing for details. - -#.rst: -# FindMPI -# ------- -# -# Find a Message Passing Interface (MPI) implementation. -# -# The Message Passing Interface (MPI) is a library used to write -# high-performance distributed-memory parallel applications, and is -# typically deployed on a cluster. MPI is a standard interface (defined -# by the MPI forum) for which many implementations are available. -# -# Variables for using MPI -# ^^^^^^^^^^^^^^^^^^^^^^^ -# -# The module exposes the components ``C``, ``CXX``, ``MPICXX`` and ``Fortran``. -# Each of these controls the various MPI languages to search for. -# The difference between ``CXX`` and ``MPICXX`` is that ``CXX`` refers to the -# MPI C API being usable from C++, whereas ``MPICXX`` refers to the MPI-2 C++ API -# that was removed again in MPI-3. -# -# Depending on the enabled components the following variables will be set: -# -# ``MPI_FOUND`` -# Variable indicating that MPI settings for all requested languages have been found. -# If no components are specified, this is true if MPI settings for all enabled languages -# were detected. Note that the ``MPICXX`` component does not affect this variable. -# ``MPI_VERSION`` -# Minimal version of MPI detected among the requested languages, or all enabled languages -# if no components were specified. -# -# This module will set the following variables per language in your -# project, where ``<lang>`` is one of C, CXX, or Fortran: -# -# ``MPI_<lang>_FOUND`` -# Variable indicating the MPI settings for ``<lang>`` were found and that -# simple MPI test programs compile with the provided settings. -# ``MPI_<lang>_COMPILER`` -# MPI compiler for ``<lang>`` if such a program exists. -# ``MPI_<lang>_COMPILE_OPTIONS`` -# Compilation options for MPI programs in ``<lang>``, given as a :ref:`;-list <CMake Language Lists>`. -# ``MPI_<lang>_COMPILE_DEFINITIONS`` -# Compilation definitions for MPI programs in ``<lang>``, given as a :ref:`;-list <CMake Language Lists>`. -# ``MPI_<lang>_INCLUDE_DIRS`` -# Include path(s) for MPI header. -# ``MPI_<lang>_LINK_FLAGS`` -# Linker flags for MPI programs. -# ``MPI_<lang>_LIBRARIES`` -# All libraries to link MPI programs against. -# -# Additionally, the following :prop_tgt:`IMPORTED` targets are defined: -# -# ``MPI::MPI_<lang>`` -# Target for using MPI from ``<lang>``. -# -# The following variables indicating which bindings are present will be defined: -# -# ``MPI_MPICXX_FOUND`` -# Variable indicating whether the MPI-2 C++ bindings are present (introduced in MPI-2, removed with MPI-3). -# ``MPI_Fortran_HAVE_F77_HEADER`` -# True if the Fortran 77 header ``mpif.h`` is available. -# ``MPI_Fortran_HAVE_F90_MODULE`` -# True if the Fortran 90 module ``mpi`` can be used for accessing MPI (MPI-2 and higher only). -# ``MPI_Fortran_HAVE_F08_MODULE`` -# True if the Fortran 2008 ``mpi_f08`` is available to MPI programs (MPI-3 and higher only). -# -# If possible, the MPI version will be determined by this module. The facilities to detect the MPI version -# were introduced with MPI-1.2, and therefore cannot be found for older MPI versions. -# -# ``MPI_<lang>_VERSION_MAJOR`` -# Major version of MPI implemented for ``<lang>`` by the MPI distribution. -# ``MPI_<lang>_VERSION_MINOR`` -# Minor version of MPI implemented for ``<lang>`` by the MPI distribution. -# ``MPI_<lang>_VERSION`` -# MPI version implemented for ``<lang>`` by the MPI distribution. -# -# Note that there's no variable for the C bindings being accessible through ``mpi.h``, since the MPI standards -# always have required this binding to work in both C and C++ code. -# -# For running MPI programs, the module sets the following variables -# -# ``MPIEXEC_EXECUTABLE`` -# Executable for running MPI programs, if such exists. -# ``MPIEXEC_NUMPROC_FLAG`` -# Flag to pass to ``mpiexec`` before giving it the number of processors to run on. -# ``MPIEXEC_MAX_NUMPROCS`` -# Number of MPI processors to utilize. Defaults to the number -# of processors detected on the host system. -# ``MPIEXEC_PREFLAGS`` -# Flags to pass to ``mpiexec`` directly before the executable to run. -# ``MPIEXEC_POSTFLAGS`` -# Flags to pass to ``mpiexec`` after other flags. -# -# Variables for locating MPI -# ^^^^^^^^^^^^^^^^^^^^^^^^^^ -# -# This module performs a three step search for an MPI implementation: -# -# 1. Check if the compiler has MPI support built-in. This is the case if the user passed a -# compiler wrapper as ``CMAKE_<LANG>_COMPILER`` or if they're on a Cray system. -# 2. Attempt to find an MPI compiler wrapper and determine the compiler information from it. -# 3. Try to find an MPI implementation that does not ship such a wrapper by guessing settings. -# Currently, only Microsoft MPI and MPICH2 on Windows are supported. -# -# For controlling the second step, the following variables may be set: -# -# ``MPI_<lang>_COMPILER`` -# Search for the specified compiler wrapper and use it. -# ``MPI_<lang>_COMPILER_FLAGS`` -# Flags to pass to the MPI compiler wrapper during interrogation. Some compiler wrappers -# support linking debug or tracing libraries if a specific flag is passed and this variable -# may be used to obtain them. -# ``MPI_COMPILER_FLAGS`` -# Used to initialize ``MPI_<lang>_COMPILER_FLAGS`` if no language specific flag has been given. -# Empty by default. -# ``MPI_EXECUTABLE_SUFFIX`` -# A suffix which is appended to all names that are being looked for. For instance you may set this -# to ``.mpich`` or ``.openmpi`` to prefer the one or the other on Debian and its derivatives. -# -# In order to control the guessing step, the following variable may be set: -# -# ``MPI_GUESS_LIBRARY_NAME`` -# Valid values are ``MSMPI`` and ``MPICH2``. If set, only the given library will be searched for. -# By default, ``MSMPI`` will be preferred over ``MPICH2`` if both are available. -# This also sets ``MPI_SKIP_COMPILER_WRAPPER`` to ``true``, which may be overridden. -# -# Each of the search steps may be skipped with the following control variables: -# -# ``MPI_ASSUME_NO_BUILTIN_MPI`` -# If true, the module assumes that the compiler itself does not provide an MPI implementation and -# skips to step 2. -# ``MPI_SKIP_COMPILER_WRAPPER`` -# If true, no compiler wrapper will be searched for. -# ``MPI_SKIP_GUESSING`` -# If true, the guessing step will be skipped. -# -# Additionally, the following control variable is available to change search behavior: -# -# ``MPI_CXX_SKIP_MPICXX`` -# Add some definitions that will disable the MPI-2 C++ bindings. -# Currently supported are MPICH, Open MPI, Platform MPI and derivatives thereof, -# for example MVAPICH or Intel MPI. -# -# If the find procedure fails for a variable ``MPI_<lang>_WORKS``, then the settings detected by or passed to -# the module did not work and even a simple MPI test program failed to compile. -# -# If all of these parameters were not sufficient to find the right MPI implementation, a user may -# disable the entire autodetection process by specifying both a list of libraries in ``MPI_<lang>_LIBRARIES`` -# and a list of include directories in ``MPI_<lang>_ADDITIONAL_INCLUDE_DIRS``. -# Any other variable may be set in addition to these two. The module will then validate the MPI settings and store the -# settings in the cache. -# -# Cache variables for MPI -# ^^^^^^^^^^^^^^^^^^^^^^^ -# -# The variable ``MPI_<lang>_INCLUDE_DIRS`` will be assembled from the following variables. -# For C and CXX: -# -# ``MPI_<lang>_HEADER_DIR`` -# Location of the ``mpi.h`` header on disk. -# -# For Fortran: -# -# ``MPI_Fortran_F77_HEADER_DIR`` -# Location of the Fortran 77 header ``mpif.h``, if it exists. -# ``MPI_Fortran_MODULE_DIR`` -# Location of the ``mpi`` or ``mpi_f08`` modules, if available. -# -# For all languages the following variables are additionally considered: -# -# ``MPI_<lang>_ADDITIONAL_INCLUDE_DIRS`` -# A :ref:`;-list <CMake Language Lists>` of paths needed in addition to the normal include directories. -# ``MPI_<include_name>_INCLUDE_DIR`` -# Path variables for include folders referred to by ``<include_name>``. -# ``MPI_<lang>_ADDITIONAL_INCLUDE_VARS`` -# A :ref:`;-list <CMake Language Lists>` of ``<include_name>`` that will be added to the include locations of ``<lang>``. -# -# The variable ``MPI_<lang>_LIBRARIES`` will be assembled from the following variables: -# -# ``MPI_<lib_name>_LIBRARY`` -# The location of a library called ``<lib_name>`` for use with MPI. -# ``MPI_<lang>_LIB_NAMES`` -# A :ref:`;-list <CMake Language Lists>` of ``<lib_name>`` that will be added to the include locations of ``<lang>``. -# -# Usage of mpiexec -# ^^^^^^^^^^^^^^^^ -# -# When using ``MPIEXEC_EXECUTABLE`` to execute MPI applications, you should typically -# use all of the ``MPIEXEC_EXECUTABLE`` flags as follows: -# -# :: -# -# ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} -# ${MPIEXEC_PREFLAGS} EXECUTABLE ${MPIEXEC_POSTFLAGS} ARGS -# -# where ``EXECUTABLE`` is the MPI program, and ``ARGS`` are the arguments to -# pass to the MPI program. -# -# Advanced variables for using MPI -# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -# -# The module can perform some advanced feature detections upon explicit request. -# -# **Important notice:** The following checks cannot be performed without *executing* an MPI test program. -# Consider the special considerations for the behavior of :command:`try_run` during cross compilation. -# Moreover, running an MPI program can cause additional issues, like a firewall notification on some systems. -# You should only enable these detections if you absolutely need the information. -# -# If the following variables are set to true, the respective search will be performed: -# -# ``MPI_DETERMINE_Fortran_CAPABILITIES`` -# Determine for all available Fortran bindings what the values of ``MPI_SUBARRAYS_SUPPORTED`` and -# ``MPI_ASYNC_PROTECTS_NONBLOCKING`` are and make their values available as ``MPI_Fortran_<binding>_SUBARRAYS`` -# and ``MPI_Fortran_<binding>_ASYNCPROT``, where ``<binding>`` is one of ``F77_HEADER``, ``F90_MODULE`` and -# ``F08_MODULE``. -# ``MPI_DETERMINE_LIBRARY_VERSION`` -# For each language, find the output of ``MPI_Get_library_version`` and make it available as ``MPI_<lang>_LIBRARY_VERSION``. -# This information is usually tied to the runtime component of an MPI implementation and might differ depending on ``<lang>``. -# Note that the return value is entirely implementation defined. This information might be used to identify -# the MPI vendor and for example pick the correct one of multiple third party binaries that matches the MPI vendor. -# -# Backward Compatibility -# ^^^^^^^^^^^^^^^^^^^^^^ -# -# For backward compatibility with older versions of FindMPI, these -# variables are set, but deprecated: -# -# :: -# -# MPI_COMPILER MPI_LIBRARY MPI_EXTRA_LIBRARY -# MPI_COMPILE_FLAGS MPI_INCLUDE_PATH MPI_LINK_FLAGS -# MPI_LIBRARIES -# -# In new projects, please use the ``MPI_<lang>_XXX`` equivalents. -# Additionally, the following variables are deprecated: -# -# ``MPI_<lang>_COMPILE_FLAGS`` -# Use ``MPI_<lang>_COMPILE_OPTIONS`` and ``MPI_<lang>_COMPILE_DEFINITIONS`` instead. -# ``MPI_<lang>_INCLUDE_PATH`` -# For consumption use ``MPI_<lang>_INCLUDE_DIRS`` and for specifying folders use ``MPI_<lang>_ADDITIONAL_INCLUDE_DIRS`` instead. -# ``MPIEXEC`` -# Use ``MPIEXEC_EXECUTABLE`` instead. - -cmake_policy(PUSH) -cmake_policy(SET CMP0057 NEW) # if IN_LIST - -# include this to handle the QUIETLY and REQUIRED arguments -include(${CMAKE_ROOT}/Modules/FindPackageHandleStandardArgs.cmake) -include(GetPrerequisites) - -# Generic compiler names -set(_MPI_C_GENERIC_COMPILER_NAMES mpicc mpcc mpicc_r mpcc_r) -set(_MPI_CXX_GENERIC_COMPILER_NAMES mpicxx mpiCC mpcxx mpCC mpic++ mpc++ - mpicxx_r mpiCC_r mpcxx_r mpCC_r mpic++_r mpc++_r) -set(_MPI_Fortran_GENERIC_COMPILER_NAMES mpif95 mpif95_r mpf95 mpf95_r - mpif90 mpif90_r mpf90 mpf90_r - mpif77 mpif77_r mpf77 mpf77_r - mpifc) - -# GNU compiler names -set(_MPI_GNU_C_COMPILER_NAMES mpigcc mpgcc mpigcc_r mpgcc_r) -set(_MPI_GNU_CXX_COMPILER_NAMES mpig++ mpg++ mpig++_r mpg++_r mpigxx) -set(_MPI_GNU_Fortran_COMPILER_NAMES mpigfortran mpgfortran mpigfortran_r mpgfortran_r - mpig77 mpig77_r mpg77 mpg77_r) - -# Intel MPI compiler names on Windows -if(WIN32) - list(APPEND _MPI_C_GENERIC_COMPILER_NAMES mpicc.bat) - list(APPEND _MPI_CXX_GENERIC_COMPILER_NAMES mpicxx.bat) - list(APPEND _MPI_Fortran_GENERIC_COMPILER_NAMES mpifc.bat) - - # Intel MPI compiler names - set(_MPI_Intel_C_COMPILER_NAMES mpiicc.bat) - set(_MPI_Intel_CXX_COMPILER_NAMES mpiicpc.bat) - set(_MPI_Intel_Fortran_COMPILER_NAMES mpiifort.bat mpif77.bat mpif90.bat) - - # Intel MPI compiler names for MSMPI - set(_MPI_MSVC_C_COMPILER_NAMES mpicl.bat) - set(_MPI_MSVC_CXX_COMPILER_NAMES mpicl.bat) -else() - # Intel compiler names - set(_MPI_Intel_C_COMPILER_NAMES mpiicc) - set(_MPI_Intel_CXX_COMPILER_NAMES mpiicpc mpiicxx mpiic++) - set(_MPI_Intel_Fortran_COMPILER_NAMES mpiifort mpiif95 mpiif90 mpiif77) -endif() - -# PGI compiler names -set(_MPI_PGI_C_COMPILER_NAMES mpipgcc mppgcc) -set(_MPI_PGI_CXX_COMPILER_NAMES mpipgCC mppgCC) -set(_MPI_PGI_Fortran_COMPILER_NAMES mpipgf95 mpipgf90 mppgf95 mppgf90 mpipgf77 mppgf77) - -# XLC MPI Compiler names -set(_MPI_XL_C_COMPILER_NAMES mpxlc mpxlc_r mpixlc mpixlc_r) -set(_MPI_XL_CXX_COMPILER_NAMES mpixlcxx mpixlC mpixlc++ mpxlcxx mpxlc++ mpixlc++ mpxlCC - mpixlcxx_r mpixlC_r mpixlc++_r mpxlcxx_r mpxlc++_r mpixlc++_r mpxlCC_r) -set(_MPI_XL_Fortran_COMPILER_NAMES mpixlf95 mpixlf95_r mpxlf95 mpxlf95_r - mpixlf90 mpixlf90_r mpxlf90 mpxlf90_r - mpixlf77 mpixlf77_r mpxlf77 mpxlf77_r - mpixlf mpixlf_r mpxlf mpxlf_r) - -# Prepend vendor-specific compiler wrappers to the list. If we don't know the compiler, -# attempt all of them. -# By attempting vendor-specific compiler names first, we should avoid situations where the compiler wrapper -# stems from a proprietary MPI and won't know which compiler it's being used for. For instance, Intel MPI -# controls its settings via the I_MPI_CC environment variables if the generic name is being used. -# If we know which compiler we're working with, we can use the most specialized wrapper there is in order to -# pick up the right settings for it. -foreach (LANG IN ITEMS C CXX Fortran) - set(_MPI_${LANG}_COMPILER_NAMES "") - foreach (id IN ITEMS GNU Intel MSVC PGI XL) - if (NOT CMAKE_${LANG}_COMPILER_ID OR CMAKE_${LANG}_COMPILER_ID STREQUAL id) - list(APPEND _MPI_${LANG}_COMPILER_NAMES ${_MPI_${id}_${LANG}_COMPILER_NAMES}${MPI_EXECUTABLE_SUFFIX}) - endif() - unset(_MPI_${id}_${LANG}_COMPILER_NAMES) - endforeach() - list(APPEND _MPI_${LANG}_COMPILER_NAMES ${_MPI_${LANG}_GENERIC_COMPILER_NAMES}${MPI_EXECUTABLE_SUFFIX}) - unset(_MPI_${LANG}_GENERIC_COMPILER_NAMES) -endforeach() - -# Names to try for mpiexec -# Only mpiexec commands are guaranteed to behave as described in the standard, -# mpirun commands are not covered by the standard in any way whatsoever. -# lamexec is the executable for LAM/MPI, srun is for SLURM or Open MPI with SLURM support. -# srun -n X <executable> is however a valid command, so it behaves 'like' mpiexec. -set(_MPIEXEC_NAMES_BASE mpiexec mpiexec.hydra mpiexec.mpd mpirun lamexec srun) - -unset(_MPIEXEC_NAMES) -foreach(_MPIEXEC_NAME IN LISTS _MPIEXEC_NAMES_BASE) - list(APPEND _MPIEXEC_NAMES "${_MPIEXEC_NAME}${MPI_EXECUTABLE_SUFFIX}") -endforeach() -unset(_MPIEXEC_NAMES_BASE) - -function (_MPI_check_compiler LANG QUERY_FLAG OUTPUT_VARIABLE RESULT_VARIABLE) - if(DEFINED MPI_${LANG}_COMPILER_FLAGS) - separate_arguments(_MPI_COMPILER_WRAPPER_OPTIONS NATIVE_COMMAND "${MPI_${LANG}_COMPILER_FLAGS}") - else() - separate_arguments(_MPI_COMPILER_WRAPPER_OPTIONS NATIVE_COMMAND "${MPI_COMPILER_FLAGS}") - endif() - execute_process( - COMMAND ${MPI_${LANG}_COMPILER} ${_MPI_COMPILER_WRAPPER_OPTIONS} ${QUERY_FLAG} - OUTPUT_VARIABLE WRAPPER_OUTPUT OUTPUT_STRIP_TRAILING_WHITESPACE - ERROR_VARIABLE WRAPPER_OUTPUT ERROR_STRIP_TRAILING_WHITESPACE - RESULT_VARIABLE WRAPPER_RETURN) - # Some compiler wrappers will yield spurious zero return values, for example - # Intel MPI tolerates unknown arguments and if the MPI wrappers loads a shared - # library that has invalid or missing version information there would be warning - # messages emitted by ld.so in the compiler output. In either case, we'll treat - # the output as invalid. - if("${WRAPPER_OUTPUT}" MATCHES "undefined reference|unrecognized|need to set|no version information available|command not found") - set(WRAPPER_RETURN 255) - endif() - # Ensure that no error output might be passed upwards. - if(NOT WRAPPER_RETURN EQUAL 0) - unset(WRAPPER_OUTPUT) - endif() - set(${OUTPUT_VARIABLE} "${WRAPPER_OUTPUT}" PARENT_SCOPE) - set(${RESULT_VARIABLE} "${WRAPPER_RETURN}" PARENT_SCOPE) -endfunction() - -function (_MPI_interrogate_compiler lang) - unset(MPI_COMPILE_CMDLINE) - unset(MPI_LINK_CMDLINE) - - unset(MPI_COMPILE_OPTIONS_WORK) - unset(MPI_COMPILE_DEFINITIONS_WORK) - unset(MPI_INCLUDE_DIRS_WORK) - unset(MPI_LINK_FLAGS_WORK) - unset(MPI_LIB_NAMES_WORK) - unset(MPI_LIB_FULLPATHS_WORK) - - # Check whether the -showme:compile option works. This indicates that we have either Open MPI - # or a newer version of LAM/MPI, and implies that -showme:link will also work. - # Open MPI also supports -show, but separates linker and compiler information - _MPI_check_compiler(${LANG} "-showme:compile" MPI_COMPILE_CMDLINE MPI_COMPILER_RETURN) - if (MPI_COMPILER_RETURN EQUAL 0) - _MPI_check_compiler(${LANG} "-showme:link" MPI_LINK_CMDLINE MPI_COMPILER_RETURN) - - if (NOT MPI_COMPILER_RETURN EQUAL 0) - unset(MPI_COMPILE_CMDLINE) - endif() - endif() - - # MPICH and MVAPICH offer -compile-info and -link-info. - # For modern versions, both do the same as -show. However, for old versions, they do differ - # when called for mpicxx and mpif90 and it's necessary to use them over -show in order to find the - # removed MPI C++ bindings. - if (NOT MPI_COMPILER_RETURN EQUAL 0) - _MPI_check_compiler(${LANG} "-compile-info" MPI_COMPILE_CMDLINE MPI_COMPILER_RETURN) - - if (MPI_COMPILER_RETURN EQUAL 0) - _MPI_check_compiler(${LANG} "-link-info" MPI_LINK_CMDLINE MPI_COMPILER_RETURN) - - if (NOT MPI_COMPILER_RETURN EQUAL 0) - unset(MPI_COMPILE_CMDLINE) - endif() - endif() - endif() - - # MPICH, MVAPICH2 and Intel MPI just use "-show". Open MPI also offers this, but the - # -showme commands are more specialized. - if (NOT MPI_COMPILER_RETURN EQUAL 0) - _MPI_check_compiler(${LANG} "-show" MPI_COMPILE_CMDLINE MPI_COMPILER_RETURN) - endif() - - # Older versions of LAM/MPI have "-showme". Open MPI also supports this. - # Unknown to MPICH, MVAPICH and Intel MPI. - if (NOT MPI_COMPILER_RETURN EQUAL 0) - _MPI_check_compiler(${LANG} "-showme" MPI_COMPILE_CMDLINE MPI_COMPILER_RETURN) - endif() - - if (NOT (MPI_COMPILER_RETURN EQUAL 0) OR NOT (DEFINED MPI_COMPILE_CMDLINE)) - # Cannot interrogate this compiler, so exit. - set(MPI_${LANG}_WRAPPER_FOUND FALSE PARENT_SCOPE) - return() - endif() - unset(MPI_COMPILER_RETURN) - - # We have our command lines, but we might need to copy MPI_COMPILE_CMDLINE - # into MPI_LINK_CMDLINE, if we didn't find the link line. - if (NOT DEFINED MPI_LINK_CMDLINE) - set(MPI_LINK_CMDLINE "${MPI_COMPILE_CMDLINE}") - endif() - - # At this point, we obtained some output from a compiler wrapper that works. - # We'll now try to parse it into variables with meaning to us. - if("${LANG}" STREQUAL "Fortran") - # Some MPICH-1 and MVAPICH-1 versions return a three command answer for Fortran, consisting - # out of a symlink command for mpif.h, the actual compiler command and a deletion of the - # created symlink. We need to detect that case, remember the include path and drop the - # symlink/deletion operation to obtain the link/compile lines we'd usually expect. - if("${MPI_COMPILE_CMDLINE}" MATCHES "^ln -s ([^\" ]+|\"[^\"]+\") mpif.h") - get_filename_component(MPI_INCLUDE_DIRS_WORK "${CMAKE_MATCH_1}" DIRECTORY) - string(REGEX REPLACE "^ln -s ([^\" ]+|\"[^\"]+\") mpif.h\n" "" MPI_COMPILE_CMDLINE "${MPI_COMPILE_CMDLINE}") - string(REGEX REPLACE "^ln -s ([^\" ]+|\"[^\"]+\") mpif.h\n" "" MPI_LINK_CMDLINE "${MPI_LINK_CMDLINE}") - string(REGEX REPLACE "\nrm -f mpif.h$" "" MPI_COMPILE_CMDLINE "${MPI_COMPILE_CMDLINE}") - string(REGEX REPLACE "\nrm -f mpif.h$" "" MPI_LINK_CMDLINE "${MPI_LINK_CMDLINE}") - endif() - endif() - - # The Intel MPI wrapper on Linux will emit some objcopy commands after its compile command - # if -static_mpi was passed to the wrapper. To avoid spurious matches, we need to drop these lines. - if(UNIX) - string(REGEX REPLACE "(^|\n)objcopy[^\n]+(\n|$)" "" MPI_COMPILE_CMDLINE "${MPI_COMPILE_CMDLINE}") - string(REGEX REPLACE "(^|\n)objcopy[^\n]+(\n|$)" "" MPI_LINK_CMDLINE "${MPI_LINK_CMDLINE}") - endif() - - # Extract compile options from the compile command line. - string(REGEX MATCHALL "(^| )-f([^\" ]+|\"[^\"]+\")" MPI_ALL_COMPILE_OPTIONS "${MPI_COMPILE_CMDLINE}") - - foreach(_MPI_COMPILE_OPTION IN LISTS MPI_ALL_COMPILE_OPTIONS) - string(REGEX REPLACE "^ " "" _MPI_COMPILE_OPTION "${_MPI_COMPILE_OPTION}") - # Ignore -fstack-protector directives: These occur on MPICH and MVAPICH when the libraries - # themselves were built with this flag. However, this flag is unrelated to using MPI, and - # we won't match the accompanying --param-ssp-size and -Wp,-D_FORTIFY_SOURCE flags and therefore - # produce inconsistent results with the regularly flags. - # Similarly, aliasing flags do not belong into our flag array. - if(NOT "${_MPI_COMPILE_OPTION}" MATCHES "^-f(stack-protector|(no-|)strict-aliasing|PI[CE]|pi[ce])") - list(APPEND MPI_COMPILE_OPTIONS_WORK "${_MPI_COMPILE_OPTION}") - endif() - endforeach() - - # Same deal, with the definitions. We also treat arguments passed to the preprocessor directly. - string(REGEX MATCHALL "(^| )(-Wp,|-Xpreprocessor |)[-/]D([^\" ]+|\"[^\"]+\")" MPI_ALL_COMPILE_DEFINITIONS "${MPI_COMPILE_CMDLINE}") - - foreach(_MPI_COMPILE_DEFINITION IN LISTS MPI_ALL_COMPILE_DEFINITIONS) - string(REGEX REPLACE "^ ?(-Wp,|-Xpreprocessor )?[-/]D" "" _MPI_COMPILE_DEFINITION "${_MPI_COMPILE_DEFINITION}") - string(REPLACE "\"" "" _MPI_COMPILE_DEFINITION "${_MPI_COMPILE_DEFINITION}") - if(NOT "${_MPI_COMPILE_DEFINITION}" MATCHES "^_FORTIFY_SOURCE.*") - list(APPEND MPI_COMPILE_DEFINITIONS_WORK "${_MPI_COMPILE_DEFINITION}") - endif() - endforeach() - - # Extract include paths from compile command line - string(REGEX MATCHALL "(^| )[-/]I([^\" ]+|\"[^\"]+\")" MPI_ALL_INCLUDE_PATHS "${MPI_COMPILE_CMDLINE}") - - # If extracting failed to work, we'll try using -showme:incdirs. - if (NOT MPI_ALL_INCLUDE_PATHS) - _MPI_check_compiler(${LANG} "-showme:incdirs" MPI_INCDIRS_CMDLINE MPI_INCDIRS_COMPILER_RETURN) - if(MPI_INCDIRS_COMPILER_RETURN) - separate_arguments(MPI_ALL_INCLUDE_PATHS NATIVE_COMMAND "${MPI_INCDIRS_CMDLINE}") - endif() - endif() - - foreach(_MPI_INCLUDE_PATH IN LISTS MPI_ALL_INCLUDE_PATHS) - string(REGEX REPLACE "^ ?[-/]I" "" _MPI_INCLUDE_PATH "${_MPI_INCLUDE_PATH}") - string(REPLACE "\"" "" _MPI_INCLUDE_PATH "${_MPI_INCLUDE_PATH}") - get_filename_component(_MPI_INCLUDE_PATH "${_MPI_INCLUDE_PATH}" REALPATH) - list(APPEND MPI_INCLUDE_DIRS_WORK "${_MPI_INCLUDE_PATH}") - endforeach() - - # Extract linker paths from the link command line - string(REGEX MATCHALL "(^| )(-Wl,|-Xlinker |)(-L|[/-]LIBPATH:|[/-]libpath:)([^\" ]+|\"[^\"]+\")" MPI_ALL_LINK_PATHS "${MPI_LINK_CMDLINE}") - - # If extracting failed to work, we'll try using -showme:libdirs. - if (NOT MPI_ALL_LINK_PATHS) - _MPI_check_compiler(${LANG} "-showme:libdirs" MPI_LIBDIRS_CMDLINE MPI_LIBDIRS_COMPILER_RETURN) - if(MPI_LIBDIRS_COMPILER_RETURN) - separate_arguments(MPI_ALL_LINK_PATHS NATIVE_COMMAND "${MPI_LIBDIRS_CMDLINE}") - endif() - endif() - - foreach(_MPI_LPATH IN LISTS MPI_ALL_LINK_PATHS) - string(REGEX REPLACE "^ ?(-Wl,|-Xlinker )?(-L|[/-]LIBPATH:|[/-]libpath:)" "" _MPI_LPATH "${_MPI_LPATH}") - string(REPLACE "\"" "" _MPI_LPATH "${_MPI_LPATH}") - get_filename_component(_MPI_LPATH "${_MPI_LPATH}" REALPATH) - list(APPEND MPI_LINK_DIRECTORIES_WORK "${_MPI_LPATH}") - endforeach() - - # Extract linker flags from the link command line - string(REGEX MATCHALL "(^| )(-Wl,|-Xlinker )([^\" ]+|\"[^\"]+\")" MPI_ALL_LINK_FLAGS "${MPI_LINK_CMDLINE}") - - foreach(_MPI_LINK_FLAG IN LISTS MPI_ALL_LINK_FLAGS) - string(STRIP "${_MPI_LINK_FLAG}" _MPI_LINK_FLAG) - # MPI might be marked to build with non-executable stacks but this should not propagate. - if (NOT "${_MPI_LINK_FLAG}" MATCHES "(-Wl,|-Xlinker )-z,noexecstack") - if (MPI_LINK_FLAGS_WORK) - string(APPEND MPI_LINK_FLAGS_WORK " ${_MPI_LINK_FLAG}") - else() - set(MPI_LINK_FLAGS_WORK "${_MPI_LINK_FLAG}") - endif() - endif() - endforeach() - - # Extract the set of libraries to link against from the link command - # line - string(REGEX MATCHALL "(^| )-l([^\" ]+|\"[^\"]+\")" MPI_LIBNAMES "${MPI_LINK_CMDLINE}") - - foreach(_MPI_LIB_NAME IN LISTS MPI_LIBNAMES) - string(REGEX REPLACE "^ ?-l" "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - string(REPLACE "\"" "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - get_filename_component(_MPI_LIB_PATH "${_MPI_LIB_NAME}" DIRECTORY) - if(NOT "${_MPI_LIB_PATH}" STREQUAL "") - list(APPEND MPI_LIB_FULLPATHS_WORK "${_MPI_LIB_NAME}") - else() - list(APPEND MPI_LIB_NAMES_WORK "${_MPI_LIB_NAME}") - endif() - endforeach() - - if(WIN32) - # A compiler wrapper on Windows will just have the name of the - # library to link on its link line, potentially with a full path - string(REGEX MATCHALL "(^| )([^\" ]+\\.lib|\"[^\"]+\\.lib\")" MPI_LIBNAMES "${MPI_LINK_CMDLINE}") - foreach(_MPI_LIB_NAME IN LISTS MPI_LIBNAMES) - string(REGEX REPLACE "^ " "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - string(REPLACE "\"" "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - get_filename_component(_MPI_LIB_PATH "${_MPI_LIB_NAME}" DIRECTORY) - if(NOT "${_MPI_LIB_PATH}" STREQUAL "") - list(APPEND MPI_LIB_FULLPATHS_WORK "${_MPI_LIB_NAME}") - else() - list(APPEND MPI_LIB_NAMES_WORK "${_MPI_LIB_NAME}") - endif() - endforeach() - else() - # On UNIX platforms, archive libraries can be given with full path. - string(REGEX MATCHALL "(^| )([^\" ]+\\.a|\"[^\"]+\\.a\")" MPI_LIBFULLPATHS "${MPI_LINK_CMDLINE}") - foreach(_MPI_LIB_NAME IN LISTS MPI_LIBFULLPATHS) - string(REGEX REPLACE "^ " "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - string(REPLACE "\"" "" _MPI_LIB_NAME "${_MPI_LIB_NAME}") - get_filename_component(_MPI_LIB_PATH "${_MPI_LIB_NAME}" DIRECTORY) - if(NOT "${_MPI_LIB_PATH}" STREQUAL "") - list(APPEND MPI_LIB_FULLPATHS_WORK "${_MPI_LIB_NAME}") - else() - list(APPEND MPI_LIB_NAMES_WORK "${_MPI_LIB_NAME}") - endif() - endforeach() - endif() - - # An MPI compiler wrapper could have its MPI libraries in the implictly - # linked directories of the compiler itself. - if(DEFINED CMAKE_${LANG}_IMPLICIT_LINK_DIRECTORIES) - list(APPEND MPI_LINK_DIRECTORIES_WORK "${CMAKE_${LANG}_IMPLICIT_LINK_DIRECTORIES}") - endif() - - # Determine full path names for all of the libraries that one needs - # to link against in an MPI program - unset(MPI_PLAIN_LIB_NAMES_WORK) - foreach(_MPI_LIB_NAME IN LISTS MPI_LIB_NAMES_WORK) - get_filename_component(_MPI_PLAIN_LIB_NAME "${_MPI_LIB_NAME}" NAME_WE) - list(APPEND MPI_PLAIN_LIB_NAMES_WORK "${_MPI_PLAIN_LIB_NAME}") - find_library(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY - NAMES "${_MPI_LIB_NAME}" "lib${_MPI_LIB_NAME}" - HINTS ${MPI_LINK_DIRECTORIES_WORK} - DOC "Location of the ${_MPI_PLAIN_LIB_NAME} library for MPI" - ) - mark_as_advanced(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY) - endforeach() - - # Deal with the libraries given with full path next - unset(MPI_DIRECT_LIB_NAMES_WORK) - foreach(_MPI_LIB_FULLPATH IN LISTS MPI_LIB_FULLPATHS_WORK) - get_filename_component(_MPI_PLAIN_LIB_NAME "${_MPI_LIB_FULLPATH}" NAME_WE) - get_filename_component(_MPI_LIB_NAME "${_MPI_LIB_FULLPATH}" NAME) - get_filename_component(_MPI_LIB_PATH "${_MPI_LIB_FULLPATH}" DIRECTORY) - list(APPEND MPI_DIRECT_LIB_NAMES_WORK "${_MPI_PLAIN_LIB_NAME}") - find_library(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY - NAMES "${_MPI_LIB_NAME}" - HINTS ${_MPI_LIB_PATH} - DOC "Location of the ${_MPI_PLAIN_LIB_NAME} library for MPI" - ) - mark_as_advanced(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY) - endforeach() - if(MPI_DIRECT_LIB_NAMES_WORK) - set(MPI_PLAIN_LIB_NAMES_WORK "${MPI_DIRECT_LIB_NAMES_WORK};${MPI_PLAIN_LIB_NAMES_WORK}") - endif() - - # MPI might require pthread to work. The above mechanism wouldn't detect it, but we need to - # link it in that case. -lpthread is covered by the normal library treatment on the other hand. - if("${MPI_COMPILE_CMDLINE}" MATCHES "-pthread") - list(APPEND MPI_COMPILE_OPTIONS_WORK "-pthread") - if(MPI_LINK_FLAGS_WORK) - string(APPEND MPI_LINK_FLAGS_WORK " -pthread") - else() - set(MPI_LINK_FLAGS_WORK "-pthread") - endif() - endif() - - if(MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS) - list(APPEND MPI_COMPILE_DEFINITIONS_WORK "${MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS}") - endif() - if(MPI_${LANG}_EXTRA_COMPILE_OPTIONS) - list(APPEND MPI_COMPILE_OPTIONS_WORK "${MPI_${LANG}_EXTRA_COMPILE_OPTIONS}") - endif() - if(MPI_${LANG}_EXTRA_LIB_NAMES) - list(APPEND MPI_PLAIN_LIB_NAMES_WORK "${MPI_${LANG}_EXTRA_LIB_NAMES}") - endif() - - # If we found MPI, set up all of the appropriate cache entries - if(NOT MPI_${LANG}_COMPILE_OPTIONS) - set(MPI_${LANG}_COMPILE_OPTIONS ${MPI_COMPILE_OPTIONS_WORK} CACHE STRING "MPI ${LANG} compilation options" FORCE) - endif() - if(NOT MPI_${LANG}_COMPILE_DEFINITIONS) - set(MPI_${LANG}_COMPILE_DEFINITIONS ${MPI_COMPILE_DEFINITIONS_WORK} CACHE STRING "MPI ${LANG} compilation definitions" FORCE) - endif() - if(NOT MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_INCLUDE_DIRS_WORK} CACHE STRING "MPI ${LANG} additional include directories" FORCE) - endif() - if(NOT MPI_${LANG}_LINK_FLAGS) - set(MPI_${LANG}_LINK_FLAGS ${MPI_LINK_FLAGS_WORK} CACHE STRING "MPI ${LANG} linker flags" FORCE) - endif() - if(NOT MPI_${LANG}_LIB_NAMES) - set(MPI_${LANG}_LIB_NAMES ${MPI_PLAIN_LIB_NAMES_WORK} CACHE STRING "MPI ${LANG} libraries to link against" FORCE) - endif() - set(MPI_${LANG}_WRAPPER_FOUND TRUE PARENT_SCOPE) -endfunction() - -function(_MPI_guess_settings LANG) - set(MPI_GUESS_FOUND FALSE) - # Currently only MSMPI and MPICH2 on Windows are supported, so we can skip this search if we're not targeting that. - if(WIN32) - # MSMPI - - # The environment variables MSMPI_INC and MSMPILIB32/64 are the only ways of locating the MSMPI_SDK, - # which is installed separately from the runtime. Thus it's possible to have mpiexec but not MPI headers - # or import libraries and vice versa. - if(NOT MPI_GUESS_LIBRARY_NAME OR "${MPI_GUESS_LIBRARY_NAME}" STREQUAL "MSMPI") - # We first attempt to locate the msmpi.lib. Should be find it, we'll assume that the MPI present is indeed - # Microsoft MPI. - if("${CMAKE_SIZEOF_VOID_P}" EQUAL 8) - set(MPI_MSMPI_LIB_PATH "$ENV{MSMPI_LIB64}") - set(MPI_MSMPI_INC_PATH_EXTRA "$ENV{MSMPI_INC}/x64") - else() - set(MPI_MSMPI_LIB_PATH "$ENV{MSMPI_LIB32}") - set(MPI_MSMPI_INC_PATH_EXTRA "$ENV{MSMPI_INC}/x86") - endif() - - find_library(MPI_msmpi_LIBRARY - NAMES msmpi - HINTS ${MPI_MSMPI_LIB_PATH} - DOC "Location of the msmpi library for Microsoft MPI") - mark_as_advanced(MPI_msmpi_LIBRARY) - - if(MPI_msmpi_LIBRARY) - # Next, we attempt to locate the MPI header. Note that for Fortran we know that mpif.h is a way - # MSMPI can be used and therefore that header has to be present. - if(NOT MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - get_filename_component(MPI_MSMPI_INC_DIR "$ENV{MSMPI_INC}" REALPATH) - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "${MPI_MSMPI_INC_DIR}" CACHE STRING "MPI ${LANG} additional include directories" FORCE) - unset(MPI_MSMPI_INC_DIR) - endif() - - # For MSMPI, one can compile the MPI module by building the mpi.f90 shipped with the MSMPI SDK, - # thus it might be present or provided by the user. Figuring out which is supported is done later on. - # The PGI Fortran compiler for instance ships a prebuilt set of modules in its own include folder. - # Should a user be employing PGI or have built its own set and provided it via cache variables, the - # splitting routine would have located the module files. - - # For C and C++, we're done here (MSMPI does not ship the MPI-2 C++ bindings) - however, for Fortran - # we need some extra library to glue Fortran support together: - # MSMPI ships 2-4 Fortran libraries, each for different Fortran compiler behaviors. The library names - # ending with a c are using the cdecl calling convention, whereas those ending with an s are for Fortran - # implementations using stdcall. Therefore, the 64-bit MSMPI only ships those ending in 'c', whereas the 32-bit - # has both variants available. - # The second difference is the last but one letter, if it's an e(nd), the length of a string argument is - # passed by the Fortran compiler after all other arguments on the parameter list, if it's an m(ixed), - # it's passed immediately after the string address. - - # To summarize: - # - msmpifec: CHARACTER length passed after the parameter list and using cdecl calling convention - # - msmpifmc: CHARACTER length passed directly after string address and using cdecl calling convention - # - msmpifes: CHARACTER length passed after the parameter list and using stdcall calling convention - # - msmpifms: CHARACTER length passed directly after string address and using stdcall calling convention - # 32-bit MSMPI ships all four libraries, 64-bit MSMPI ships only the first two. - - # As is, Intel Fortran and PGI Fortran both use the 'ec' variant of the calling convention, whereas - # the old Compaq Visual Fortran compiler defaulted to the 'ms' version. It's possible to make Intel Fortran - # use the CVF calling convention using /iface:cvf, but we assume - and this is also assumed in FortranCInterface - - # this isn't the case. It's also possible to make CVF use the 'ec' variant, using /iface=(cref,nomixed_str_len_arg). - - # Our strategy is now to locate all libraries, but enter msmpifec into the LIB_NAMES array. - # Should this not be adequate it's a straightforward way for a user to change the LIB_NAMES array and - # have his library found. Still, this should not be necessary outside of exceptional cases, as reasoned. - if ("${LANG}" STREQUAL "Fortran") - set(MPI_MSMPI_CALLINGCONVS c) - if("${CMAKE_SIZEOF_VOID_P}" EQUAL 4) - list(APPEND MPI_MSMPI_CALLINGCONVS s) - endif() - foreach(mpistrlenpos IN ITEMS e m) - foreach(mpicallingconv IN LISTS MPI_MSMPI_CALLINGCONVS) - find_library(MPI_msmpif${mpistrlenpos}${mpicallingconv}_LIBRARY - NAMES msmpif${mpistrlenpos}${mpicallingconv} - HINTS "${MPI_MSMPI_LIB_PATH}" - DOC "Location of the msmpi${mpistrlenpos}${mpicallingconv} library for Microsoft MPI") - mark_as_advanced(MPI_msmpif${mpistrlenpos}${mpicallingconv}_LIBRARY) - endforeach() - endforeach() - if(NOT MPI_${LANG}_LIB_NAMES) - set(MPI_${LANG}_LIB_NAMES "msmpi;msmpifec" CACHE STRING "MPI ${LANG} libraries to link against" FORCE) - endif() - - # At this point we're *not* done. MSMPI requires an additional include file for Fortran giving the value - # of MPI_AINT. This file is called mpifptr.h located in the x64 and x86 subfolders, respectively. - find_path(MPI_mpifptr_INCLUDE_DIR - NAMES "mpifptr.h" - HINTS "${MPI_MSMPI_INC_PATH_EXTRA}" - DOC "Location of the mpifptr.h extra header for Microsoft MPI") - if(NOT MPI_${LANG}_ADDITIONAL_INCLUDE_VARS) - set(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS "mpifptr" CACHE STRING "MPI ${LANG} additional include directory variables, given in the form MPI_<name>_INCLUDE_DIR." FORCE) - endif() - mark_as_advanced(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS MPI_mpifptr_INCLUDE_DIR) - else() - if(NOT MPI_${LANG}_LIB_NAMES) - set(MPI_${LANG}_LIB_NAMES "msmpi" CACHE STRING "MPI ${LANG} libraries to link against" FORCE) - endif() - endif() - mark_as_advanced(MPI_${LANG}_LIB_NAMES) - set(MPI_GUESS_FOUND TRUE) - endif() - endif() - - # At this point there's not many MPIs that we could still consider. - # OpenMPI 1.6.x and below supported Windows, but these ship compiler wrappers that still work. - # The only other relevant MPI implementation without a wrapper is MPICH2, which had Windows support in 1.4.1p1 and older. - if(NOT MPI_GUESS_LIBRARY_NAME OR "${MPI_GUESS_LIBRARY_NAME}" STREQUAL "MPICH2") - set(MPI_MPICH_PREFIX_PATHS - "$ENV{ProgramW6432}/MPICH2/lib" - "[HKEY_LOCAL_MACHINE\\SOFTWARE\\MPICH\\SMPD;binary]/../lib" - "[HKEY_LOCAL_MACHINE\\SOFTWARE\\MPICH2;Path]/lib" - ) - - # All of C, C++ and Fortran will need mpi.lib, so we'll look for this first - find_library(MPI_mpi_LIBRARY - NAMES mpi - HINTS ${MPI_MPICH_PREFIX_PATHS}) - mark_as_advanced(MPI_mpi_LIBRARY) - # If we found mpi.lib, we detect the rest of MPICH2 - if(MPI_mpi_LIBRARY) - set(MPI_MPICH_LIB_NAMES "mpi") - # If MPI-2 C++ bindings are requested, we need to locate cxx.lib as well. - # Otherwise, MPICH_SKIP_MPICXX will be defined and these bindings aren't needed. - if("${LANG}" STREQUAL "CXX" AND NOT MPI_CXX_SKIP_MPICXX) - find_library(MPI_cxx_LIBRARY - NAMES cxx - HINTS ${MPI_MPICH_PREFIX_PATHS}) - mark_as_advanced(MPI_cxx_LIBRARY) - list(APPEND MPI_MPICH_LIB_NAMES "cxx") - # For Fortran, MPICH2 provides three different libraries: - # fmpich2.lib which uses uppercase symbols and cdecl, - # fmpich2s.lib which uses uppercase symbols and stdcall (32-bit only), - # fmpich2g.lib which uses lowercase symbols with double underscores and cdecl. - # fmpich2s.lib would be useful for Compaq Visual Fortran, fmpich2g.lib has to be used with GNU g77 and is also - # provided in the form of an .a archive for MinGW and Cygwin. From our perspective, fmpich2.lib is the only one - # we need to try, and if it doesn't work with the given Fortran compiler we'd find out later on during validation - elseif("${LANG}" STREQUAL "Fortran") - find_library(MPI_fmpich2_LIBRARY - NAMES fmpich2 - HINTS ${MPI_MPICH_PREFIX_PATHS}) - find_library(MPI_fmpich2s_LIBRARY - NAMES fmpich2s - HINTS ${MPI_MPICH_PREFIX_PATHS}) - find_library(MPI_fmpich2g_LIBRARY - NAMES fmpich2g - HINTS ${MPI_MPICH_PREFIX_PATHS}) - mark_as_advanced(MPI_fmpich2_LIBRARY MPI_fmpich2s_LIBRARY MPI_fmpich2g_LIBRARY) - list(APPEND MPI_MPICH_LIB_NAMES "fmpich2") - endif() - - if(NOT MPI_${LANG}_LIB_NAMES) - set(MPI_${LANG}_LIB_NAMES "${MPI_MPICH_LIB_NAMES}" CACHE STRING "MPI ${LANG} libraries to link against" FORCE) - endif() - unset(MPI_MPICH_LIB_NAMES) - - if(NOT MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - # For MPICH2, the include folder would be in ../include relative to the library folder. - get_filename_component(MPI_MPICH_ROOT_DIR "${MPI_mpi_LIBRARY}" DIRECTORY) - get_filename_component(MPI_MPICH_ROOT_DIR "${MPI_MPICH_ROOT_DIR}" DIRECTORY) - if(IS_DIRECTORY "${MPI_MPICH_ROOT_DIR}/include") - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "${MPI_MPICH_ROOT_DIR}/include" CACHE STRING "MPI ${LANG} additional include directory variables, given in the form MPI_<name>_INCLUDE_DIR." FORCE) - endif() - unset(MPI_MPICH_ROOT_DIR) - endif() - set(MPI_GUESS_FOUND TRUE) - endif() - unset(MPI_MPICH_PREFIX_PATHS) - endif() - endif() - set(MPI_${LANG}_GUESS_FOUND "${MPI_GUESS_FOUND}" PARENT_SCOPE) -endfunction() - -function(_MPI_adjust_compile_definitions LANG) - if("${LANG}" STREQUAL "CXX") - # To disable the C++ bindings, we need to pass some definitions since the mpi.h header has to deal with both C and C++ - # bindings in MPI-2. - if(MPI_CXX_SKIP_MPICXX AND NOT MPI_${LANG}_COMPILE_DEFINITIONS MATCHES "SKIP_MPICXX") - # MPICH_SKIP_MPICXX is being used in MPICH and derivatives like MVAPICH or Intel MPI - # OMPI_SKIP_MPICXX is being used in Open MPI - # _MPICC_H is being used for IBM Platform MPI - list(APPEND MPI_${LANG}_COMPILE_DEFINITIONS "MPICH_SKIP_MPICXX" "OMPI_SKIP_MPICXX" "_MPICC_H") - set(MPI_${LANG}_COMPILE_DEFINITIONS "${MPI_${LANG}_COMPILE_DEFINITIONS}" CACHE STRING "MPI ${LANG} compilation definitions" FORCE) - endif() - endif() -endfunction() - -macro(_MPI_assemble_libraries LANG) - set(MPI_${LANG}_LIBRARIES "") - # Only for libraries do we need to check whether the compiler's linking stage is separate. - if(NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}" OR NOT MPI_${LANG}_WORKS_IMPLICIT) - foreach(mpilib IN LISTS MPI_${LANG}_LIB_NAMES) - list(APPEND MPI_${LANG}_LIBRARIES ${MPI_${mpilib}_LIBRARY}) - endforeach() - endif() -endmacro() - -macro(_MPI_assemble_include_dirs LANG) - if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}") - set(MPI_${LANG}_INCLUDE_DIRS "") - else() - set(MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS}") - if("${LANG}" MATCHES "(C|CXX)") - if(MPI_${LANG}_HEADER_DIR) - list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_HEADER_DIR}") - endif() - else() # Fortran - if(MPI_${LANG}_F77_HEADER_DIR) - list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_F77_HEADER_DIR}") - endif() - if(MPI_${LANG}_MODULE_DIR AND NOT "${MPI_${LANG}_MODULE_DIR}" IN_LIST MPI_${LANG}_INCLUDE_DIRS) - list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_MODULE_DIR}") - endif() - endif() - if(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS) - foreach(MPI_ADDITIONAL_INC_DIR IN LISTS MPI_${LANG}_ADDITIONAL_INCLUDE_VARS) - list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${MPI_ADDITIONAL_INC_DIR}_INCLUDE_DIR}") - endforeach() - endif() - endif() -endmacro() - -function(_MPI_split_include_dirs LANG) - if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}") - return() - endif() - # Backwards compatibility: Search INCLUDE_PATH if given. - if(MPI_${LANG}_INCLUDE_PATH) - list(APPEND MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "${MPI_${LANG}_INCLUDE_PATH}") - endif() - - # We try to find the headers/modules among those paths (and system paths) - # For C/C++, we just need to have a look for mpi.h. - if("${LANG}" MATCHES "(C|CXX)") - find_path(MPI_${LANG}_HEADER_DIR "mpi.h" - HINTS ${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS} - ) - mark_as_advanced(MPI_${LANG}_HEADER_DIR) - if(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - list(REMOVE_ITEM MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "${MPI_${LANG}_HEADER_DIR}") - endif() - # Fortran is more complicated here: An implementation could provide - # any of the Fortran 77/90/2008 APIs for MPI. For example, MSMPI - # only provides Fortran 77 and - if mpi.f90 is built - potentially - # a Fortran 90 module. - elseif("${LANG}" STREQUAL "Fortran") - find_path(MPI_${LANG}_F77_HEADER_DIR "mpif.h" - HINTS ${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS} - ) - find_path(MPI_${LANG}_MODULE_DIR - NAMES "mpi.mod" "mpi_f08.mod" - HINTS ${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS} - ) - if(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - list(REMOVE_ITEM MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS - "${MPI_${LANG}_F77_HEADER_DIR}" - "${MPI_${LANG}_MODULE_DIR}" - ) - endif() - mark_as_advanced(MPI_${LANG}_F77_HEADER_DIR MPI_${LANG}_MODULE_DIR) - endif() - # Remove duplicates and default system directories from the list. - if(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - list(REMOVE_DUPLICATES MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS) - foreach(MPI_IMPLICIT_INC_DIR IN LISTS CMAKE_${LANG}_IMPLICIT_LINK_DIRECTORIES) - list(REMOVE_ITEM MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_IMPLICIT_INC_DIR}) - endforeach() - endif() - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS} CACHE STRING "MPI ${LANG} additional include directories" FORCE) -endfunction() - -macro(_MPI_create_imported_target LANG) - if(NOT TARGET MPI::MPI_${LANG}) - add_library(MPI::MPI_${LANG} INTERFACE IMPORTED) - endif() - - set_property(TARGET MPI::MPI_${LANG} PROPERTY INTERFACE_COMPILE_OPTIONS "${MPI_${LANG}_COMPILE_OPTIONS}") - set_property(TARGET MPI::MPI_${LANG} PROPERTY INTERFACE_COMPILE_DEFINITIONS "${MPI_${LANG}_COMPILE_DEFINITIONS}") - - set_property(TARGET MPI::MPI_${LANG} PROPERTY INTERFACE_LINK_LIBRARIES "") - if(MPI_${LANG}_LINK_FLAGS) - set_property(TARGET MPI::MPI_${LANG} APPEND PROPERTY INTERFACE_LINK_LIBRARIES "${MPI_${LANG}_LINK_FLAGS}") - endif() - # If the compiler links MPI implicitly, no libraries will be found as they're contained within - # CMAKE_<LANG>_IMPLICIT_LINK_LIBRARIES already. - if(MPI_${LANG}_LIBRARIES) - set_property(TARGET MPI::MPI_${LANG} APPEND PROPERTY INTERFACE_LINK_LIBRARIES "${MPI_${LANG}_LIBRARIES}") - endif() - # Given the new design of FindMPI, INCLUDE_DIRS will always be located, even under implicit linking. - set_property(TARGET MPI::MPI_${LANG} PROPERTY INTERFACE_INCLUDE_DIRECTORIES "${MPI_${LANG}_INCLUDE_DIRS}") -endmacro() - -function(_MPI_try_staged_settings LANG MPI_TEST_FILE_NAME MODE RUN_BINARY) - set(WORK_DIR "${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/FindMPI") - set(SRC_DIR "${CMAKE_CURRENT_LIST_DIR}/FindMPI") - set(BIN_FILE "${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/FindMPI/${MPI_TEST_FILE_NAME}_${LANG}.bin") - unset(MPI_TEST_COMPILE_DEFINITIONS) - if("${LANG}" STREQUAL "Fortran") - if("${MODE}" STREQUAL "F90_MODULE") - set(MPI_Fortran_INCLUDE_LINE "use mpi\n implicit none") - elseif("${MODE}" STREQUAL "F08_MODULE") - set(MPI_Fortran_INCLUDE_LINE "use mpi_f08\n implicit none") - else() # F77 header - set(MPI_Fortran_INCLUDE_LINE "implicit none\n include 'mpif.h'") - endif() - configure_file("${SRC_DIR}/${MPI_TEST_FILE_NAME}.f90.in" "${WORK_DIR}/${MPI_TEST_FILE_NAME}.f90" @ONLY) - set(MPI_TEST_SOURCE_FILE "${WORK_DIR}/${MPI_TEST_FILE_NAME}.f90") - elseif("${LANG}" STREQUAL "CXX") - configure_file("${SRC_DIR}/${MPI_TEST_FILE_NAME}.c" "${WORK_DIR}/${MPI_TEST_FILE_NAME}.cpp" COPYONLY) - set(MPI_TEST_SOURCE_FILE "${WORK_DIR}/${MPI_TEST_FILE_NAME}.cpp") - if("${MODE}" STREQUAL "TEST_MPICXX") - set(MPI_TEST_COMPILE_DEFINITIONS TEST_MPI_MPICXX) - endif() - else() # C - set(MPI_TEST_SOURCE_FILE "${SRC_DIR}/${MPI_TEST_FILE_NAME}.c") - endif() - if(RUN_BINARY) - try_run(MPI_RUN_RESULT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE} MPI_RESULT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE} - "${CMAKE_BINARY_DIR}" SOURCES "${MPI_TEST_SOURCE_FILE}" - COMPILE_DEFINITIONS ${MPI_TEST_COMPILE_DEFINITIONS} - LINK_LIBRARIES MPI::MPI_${LANG} - RUN_OUTPUT_VARIABLE MPI_RUN_OUTPUT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE}) - set(MPI_RUN_OUTPUT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE} "${MPI_RUN_OUTPUT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE}}" PARENT_SCOPE) - else() - try_compile(MPI_RESULT_${LANG}_${MPI_TEST_FILE_NAME}_${MODE} - "${CMAKE_BINARY_DIR}" SOURCES "${MPI_TEST_SOURCE_FILE}" - COMPILE_DEFINITIONS ${MPI_TEST_COMPILE_DEFINITIONS} - LINK_LIBRARIES MPI::MPI_${LANG} - COPY_FILE "${BIN_FILE}") - endif() -endfunction() - -macro(_MPI_check_lang_works LANG) - # For Fortran we may have by the MPI-3 standard an implementation that provides: - # - the mpi_f08 module - # - *both*, the mpi module and 'mpif.h' - # Since older MPI standards (MPI-1) did not define anything but 'mpif.h', we need to check all three individually. - if( NOT MPI_${LANG}_WORKS ) - if("${LANG}" STREQUAL "Fortran") - set(MPI_Fortran_INTEGER_LINE "(kind=MPI_INTEGER_KIND)") - _MPI_try_staged_settings(${LANG} test_mpi F77_HEADER FALSE) - _MPI_try_staged_settings(${LANG} test_mpi F90_MODULE FALSE) - _MPI_try_staged_settings(${LANG} test_mpi F08_MODULE FALSE) - - set(MPI_${LANG}_WORKS FALSE) - - foreach(mpimethod IN ITEMS F77_HEADER F08_MODULE F90_MODULE) - if(MPI_RESULT_${LANG}_test_mpi_${mpimethod}) - set(MPI_${LANG}_WORKS TRUE) - set(MPI_${LANG}_HAVE_${mpimethod} TRUE) - else() - set(MPI_${LANG}_HAVE_${mpimethod} FALSE) - endif() - endforeach() - # MPI-1 versions had no MPI_INTGER_KIND defined, so we need to try without it. - # However, MPI-1 also did not define the Fortran 90 and 08 modules, so we only try the F77 header. - unset(MPI_Fortran_INTEGER_LINE) - if(NOT MPI_${LANG}_WORKS) - _MPI_try_staged_settings(${LANG} test_mpi F77_HEADER_NOKIND FALSE) - if(MPI_RESULT_${LANG}_test_mpi_F77_HEADER_NOKIND) - set(MPI_${LANG}_WORKS TRUE) - set(MPI_${LANG}_HAVE_F77_HEADER TRUE) - endif() - endif() - else() - _MPI_try_staged_settings(${LANG} test_mpi normal FALSE) - # If 'test_mpi' built correctly, we've found valid MPI settings. There might not be MPI-2 C++ support, but there can't - # be MPI-2 C++ support without the C bindings being present, so checking for them is sufficient. - set(MPI_${LANG}_WORKS "${MPI_RESULT_${LANG}_test_mpi_normal}") - endif() - endif() -endmacro() - -# Some systems install various MPI implementations in separate folders in some MPI prefix -# This macro enumerates all such subfolders and adds them to the list of hints that will be searched. -macro(MPI_search_mpi_prefix_folder PREFIX_FOLDER) - if(EXISTS "${PREFIX_FOLDER}") - file(GLOB _MPI_folder_children RELATIVE "${PREFIX_FOLDER}" "${PREFIX_FOLDER}/*") - foreach(_MPI_folder_child IN LISTS _MPI_folder_children) - if(IS_DIRECTORY "${PREFIX_FOLDER}/${_MPI_folder_child}") - list(APPEND MPI_HINT_DIRS "${PREFIX_FOLDER}/${_MPI_folder_child}") - endif() - endforeach() - endif() -endmacro() - -set(MPI_HINT_DIRS ${MPI_HOME} $ENV{MPI_HOME} $ENV{I_MPI_ROOT}) -if("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "Linux") - # SUSE Linux Enterprise Server stores its MPI implementations under /usr/lib64/mpi/gcc/<name> - # We enumerate the subfolders and append each as a prefix - MPI_search_mpi_prefix_folder("/usr/lib64/mpi/gcc") -elseif("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "Windows") - # MSMPI stores its runtime in a special folder, this adds the possible locations to the hints. - list(APPEND MPI_HINT_DIRS $ENV{MSMPI_BIN} "[HKEY_LOCAL_MACHINE\\SOFTWARE\\Microsoft\\MPI;InstallRoot]") -elseif("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "FreeBSD") - # FreeBSD ships mpich under the normal system paths - but available openmpi implementations - # will be found in /usr/local/mpi/<name> - MPI_search_mpi_prefix_folder("/usr/local/mpi") -endif() - -# Most MPI distributions have some form of mpiexec or mpirun which gives us something we can look for. -# The MPI standard does not mandate the existence of either, but instead only makes requirements if a distribution -# ships an mpiexec program (mpirun executables are not regulated by the standard). -find_program(MPIEXEC_EXECUTABLE - NAMES ${_MPIEXEC_NAMES} - PATH_SUFFIXES bin sbin - HINTS ${MPI_HINT_DIRS} - DOC "Executable for running MPI programs.") - -# call get_filename_component twice to remove mpiexec and the directory it exists in (typically bin). -# This gives us a fairly reliable base directory to search for /bin /lib and /include from. -get_filename_component(_MPI_BASE_DIR "${MPIEXEC_EXECUTABLE}" PATH) -get_filename_component(_MPI_BASE_DIR "${_MPI_BASE_DIR}" PATH) - -# According to the MPI standard, section 8.8 -n is a guaranteed, and the only guaranteed way to -# launch an MPI process using mpiexec if such a program exists. -set(MPIEXEC_NUMPROC_FLAG "-n" CACHE STRING "Flag used by MPI to specify the number of processes for mpiexec; the next option will be the number of processes.") -set(MPIEXEC_PREFLAGS "" CACHE STRING "These flags will be directly before the executable that is being run by mpiexec.") -set(MPIEXEC_POSTFLAGS "" CACHE STRING "These flags will be placed after all flags passed to mpiexec.") - -# Set the number of processes to the physical processor count -cmake_host_system_information(RESULT _MPIEXEC_NUMPROCS QUERY NUMBER_OF_PHYSICAL_CORES) -set(MPIEXEC_MAX_NUMPROCS "${_MPIEXEC_NUMPROCS}" CACHE STRING "Maximum number of processors available to run MPI applications.") -unset(_MPIEXEC_NUMPROCS) -mark_as_advanced(MPIEXEC_EXECUTABLE MPIEXEC_NUMPROC_FLAG MPIEXEC_PREFLAGS MPIEXEC_POSTFLAGS MPIEXEC_MAX_NUMPROCS) - -#============================================================================= -# Backward compatibility input hacks. Propagate the FindMPI hints to C and -# CXX if the respective new versions are not defined. Translate the old -# MPI_LIBRARY and MPI_EXTRA_LIBRARY to respective MPI_${LANG}_LIBRARIES. -# -# Once we find the new variables, we translate them back into their old -# equivalents below. -if(NOT MPI_IGNORE_LEGACY_VARIABLES) - foreach (LANG IN ITEMS C CXX) - # Old input variables. - set(_MPI_OLD_INPUT_VARS COMPILER COMPILE_FLAGS INCLUDE_PATH LINK_FLAGS) - - # Set new vars based on their old equivalents, if the new versions are not already set. - foreach (var ${_MPI_OLD_INPUT_VARS}) - if (NOT MPI_${LANG}_${var} AND MPI_${var}) - set(MPI_${LANG}_${var} "${MPI_${var}}") - endif() - endforeach() - - # Chop the old compile flags into options and definitions - - unset(MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS) - unset(MPI_${LANG}_EXTRA_COMPILE_OPTIONS) - if(MPI_${LANG}_COMPILE_FLAGS) - separate_arguments(MPI_SEPARATE_FLAGS NATIVE_COMMAND "${MPI_${LANG}_COMPILE_FLAGS}") - foreach(_MPI_FLAG IN LISTS MPI_SEPARATE_FLAGS) - if("${_MPI_FLAG}" MATCHES "^ *[-/D]([^ ]+)") - list(APPEND MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS "${CMAKE_MATCH_1}") - else() - list(APPEND MPI_${LANG}_EXTRA_COMPILE_OPTIONS "${_MPI_FLAG}") - endif() - endforeach() - unset(MPI_SEPARATE_FLAGS) - endif() - - # If a list of libraries was given, we'll split it into new-style cache variables - unset(MPI_${LANG}_EXTRA_LIB_NAMES) - if(NOT MPI_${LANG}_LIB_NAMES) - foreach(_MPI_LIB IN LISTS MPI_${LANG}_LIBRARIES MPI_LIBRARY MPI_EXTRA_LIBRARY) - if(_MPI_LIB) - get_filename_component(_MPI_PLAIN_LIB_NAME "${_MPI_LIB}" NAME_WE) - get_filename_component(_MPI_LIB_NAME "${_MPI_LIB}" NAME) - get_filename_component(_MPI_LIB_DIR "${_MPI_LIB}" DIRECTORY) - list(APPEND MPI_${LANG}_EXTRA_LIB_NAMES "${_MPI_PLAIN_LIB_NAME}") - find_library(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY - NAMES "${_MPI_LIB_NAME}" "lib${_MPI_LIB_NAME}" - HINTS ${_MPI_LIB_DIR} $ENV{MPI_LIB} - DOC "Location of the ${_MPI_PLAIN_LIB_NAME} library for MPI" - ) - mark_as_advanced(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY) - endif() - endforeach() - endif() - endforeach() -endif() -#============================================================================= - -unset(MPI_VERSION) -unset(MPI_VERSION_MAJOR) -unset(MPI_VERSION_MINOR) - -unset(_MPI_MIN_VERSION) - -# If the user specified a library name we assume they prefer that library over a wrapper. If not, they can disable skipping manually. -if(NOT DEFINED MPI_SKIP_COMPILER_WRAPPER AND MPI_GUESS_LIBRARY_NAME) - set(MPI_SKIP_COMPILER_WRAPPER TRUE) -endif() - -# This loop finds the compilers and sends them off for interrogation. -foreach(LANG IN ITEMS C CXX Fortran) - if(CMAKE_${LANG}_COMPILER_LOADED) - if(NOT MPI_FIND_COMPONENTS) - set(_MPI_FIND_${LANG} TRUE) - elseif( ${LANG} IN_LIST MPI_FIND_COMPONENTS) - set(_MPI_FIND_${LANG} TRUE) - elseif( ${LANG} STREQUAL CXX AND NOT MPI_CXX_SKIP_MPICXX AND MPICXX IN_LIST MPI_FIND_COMPONENTS ) - set(_MPI_FIND_${LANG} TRUE) - else() - set(_MPI_FIND_${LANG} FALSE) - endif() - else() - set(_MPI_FIND_${LANG} FALSE) - endif() - if(_MPI_FIND_${LANG}) - if( ${LANG} STREQUAL CXX AND NOT MPICXX IN_LIST MPI_FIND_COMPONENTS ) - set(MPI_CXX_SKIP_MPICXX FALSE CACHE BOOL "If true, the MPI-2 C++ bindings are disabled using definitions.") - mark_as_advanced(MPI_CXX_SKIP_MPICXX) - endif() - if(NOT (MPI_${LANG}_LIB_NAMES AND (MPI_${LANG}_INCLUDE_PATH OR MPI_${LANG}_INCLUDE_DIRS OR MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS))) - set(MPI_${LANG}_TRIED_IMPLICIT FALSE) - set(MPI_${LANG}_WORKS_IMPLICIT FALSE) - if(NOT MPI_${LANG}_COMPILER AND NOT MPI_ASSUME_NO_BUILTIN_MPI) - # Should the imported targets be empty, we effectively try whether the compiler supports MPI on its own, which is the case on e.g. - # Cray PrgEnv. - _MPI_create_imported_target(${LANG}) - _MPI_check_lang_works(${LANG}) - - # If the compiler can build MPI code on its own, it functions as an MPI compiler and we'll set the variable to point to it. - if(MPI_${LANG}_WORKS) - set(MPI_${LANG}_COMPILER "${CMAKE_${LANG}_COMPILER}" CACHE FILEPATH "MPI compiler for ${LANG}" FORCE) - set(MPI_${LANG}_WORKS_IMPLICIT TRUE) - endif() - set(MPI_${LANG}_TRIED_IMPLICIT TRUE) - endif() - - if(NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}" OR NOT MPI_${LANG}_WORKS) - set(MPI_${LANG}_WRAPPER_FOUND FALSE) - set(MPI_PINNED_COMPILER FALSE) - - if(NOT MPI_SKIP_COMPILER_WRAPPER) - if(MPI_${LANG}_COMPILER) - # If the user supplies a compiler *name* instead of an absolute path, assume that we need to find THAT compiler. - if (NOT IS_ABSOLUTE "${MPI_${LANG}_COMPILER}") - # Get rid of our default list of names and just search for the name the user wants. - set(_MPI_${LANG}_COMPILER_NAMES "${MPI_${LANG}_COMPILER}") - unset(MPI_${LANG}_COMPILER CACHE) - endif() - # If the user specifies a compiler, we don't want to try to search libraries either. - set(MPI_PINNED_COMPILER TRUE) - endif() - - # If we have an MPI base directory, we'll try all compiler names in that one first. - # This should prevent mixing different MPI environments - if(_MPI_BASE_DIR) - find_program(MPI_${LANG}_COMPILER - NAMES ${_MPI_${LANG}_COMPILER_NAMES} - PATH_SUFFIXES bin sbin - HINTS ${_MPI_BASE_DIR} - NO_DEFAULT_PATH - DOC "MPI compiler for ${LANG}" - ) - endif() - - # If the base directory did not help (for example because the mpiexec isn't in the same directory as the compilers), - # we shall try searching in the default paths. - find_program(MPI_${LANG}_COMPILER - NAMES ${_MPI_${LANG}_COMPILER_NAMES} - PATH_SUFFIXES bin sbin - DOC "MPI compiler for ${LANG}" - ) - - if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}") - set(MPI_PINNED_COMPILER TRUE) - - # If we haven't made the implicit compiler test yet, perform it now. - if(NOT MPI_${LANG}_TRIED_IMPLICIT) - _MPI_create_imported_target(${LANG}) - _MPI_check_lang_works(${LANG}) - endif() - - # Should the MPI compiler not work implicitly for MPI, still interrogate it. - # Otherwise, MPI compilers for which CMake has separate linking stages, e.g. Intel MPI on Windows where link.exe is being used - # directly during linkage instead of CMAKE_<LANG>_COMPILER will not work. - if(NOT MPI_${LANG}_WORKS) - set(MPI_${LANG}_WORKS_IMPLICIT FALSE) - _MPI_interrogate_compiler(${LANG}) - else() - set(MPI_${LANG}_WORKS_IMPLICIT TRUE) - endif() - elseif(MPI_${LANG}_COMPILER) - _MPI_interrogate_compiler(${LANG}) - endif() - endif() - - if(NOT MPI_SKIP_GUESSING AND NOT MPI_${LANG}_WRAPPER_FOUND AND NOT MPI_PINNED_COMPILER) - # For C++, we may use the settings for C. Should a given compiler wrapper for C++ not exist, but one for C does, we copy over the - # settings for C. An MPI distribution that is in this situation would be IBM Platform MPI. - if("${LANG}" STREQUAL "CXX" AND MPI_C_WRAPPER_FOUND) - set(MPI_${LANG}_COMPILE_OPTIONS ${MPI_C_COMPILE_OPTIONS} CACHE STRING "MPI ${LANG} compilation options" ) - set(MPI_${LANG}_COMPILE_DEFINITIONS ${MPI_C_COMPILE_DEFINITIONS} CACHE STRING "MPI ${LANG} compilation definitions" ) - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_C_INCLUDE_DIRS} CACHE STRING "MPI ${LANG} additional include directories") - set(MPI_${LANG}_LINK_FLAGS ${MPI_C_LINK_FLAGS} CACHE STRING "MPI ${LANG} linker flags" ) - set(MPI_${LANG}_LIB_NAMES ${MPI_C_LIB_NAMES} CACHE STRING "MPI ${LANG} libraries to link against" ) - else() - _MPI_guess_settings(${LANG}) - endif() - endif() - endif() - endif() - - _MPI_split_include_dirs(${LANG}) - _MPI_assemble_include_dirs(${LANG}) - _MPI_assemble_libraries(${LANG}) - - _MPI_adjust_compile_definitions(${LANG}) - # We always create imported targets even if they're empty - _MPI_create_imported_target(${LANG}) - - if(NOT MPI_${LANG}_WORKS) - _MPI_check_lang_works(${LANG}) - endif() - - # Next, we'll initialize the MPI variables that have not been previously set. - set(MPI_${LANG}_COMPILE_OPTIONS "" CACHE STRING "MPI ${LANG} compilation flags" ) - set(MPI_${LANG}_COMPILE_DEFINITIONS "" CACHE STRING "MPI ${LANG} compilation definitions" ) - set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "" CACHE STRING "MPI ${LANG} additional include directories") - set(MPI_${LANG}_LINK_FLAGS "" CACHE STRING "MPI ${LANG} linker flags" ) - if(NOT MPI_${LANG}_COMPILER STREQUAL CMAKE_${LANG}_COMPILER) - set(MPI_${LANG}_LIB_NAMES "" CACHE STRING "MPI ${LANG} libraries to link against" ) - endif() - mark_as_advanced(MPI_${LANG}_COMPILE_OPTIONS MPI_${LANG}_COMPILE_DEFINITIONS MPI_${LANG}_LINK_FLAGS - MPI_${LANG}_LIB_NAMES MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS MPI_${LANG}_COMPILER) - - # If we've found MPI, then we'll perform additional analysis: Determine the MPI version, MPI library version, supported - # MPI APIs (i.e. MPI-2 C++ bindings). For Fortran we also need to find specific parameters if we're under MPI-3. - if(MPI_${LANG}_WORKS) - if("${LANG}" STREQUAL "CXX" AND NOT DEFINED MPI_MPICXX_FOUND) - if(NOT MPI_CXX_SKIP_MPICXX AND NOT MPI_CXX_VALIDATE_SKIP_MPICXX) - _MPI_try_staged_settings(${LANG} test_mpi MPICXX FALSE) - if(MPI_RESULT_${LANG}_test_mpi_MPICXX) - set(MPI_MPICXX_FOUND TRUE) - else() - set(MPI_MPICXX_FOUND FALSE) - endif() - else() - set(MPI_MPICXX_FOUND FALSE) - endif() - endif() - - # At this point, we know the bindings present but not the MPI version or anything else. - if(NOT DEFINED MPI_${LANG}_VERSION) - unset(MPI_${LANG}_VERSION_MAJOR) - unset(MPI_${LANG}_VERSION_MINOR) - endif() - set(MPI_BIN_FOLDER ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/FindMPI) - - # For Fortran, we'll want to use the most modern MPI binding to test capabilities other than the - # Fortran parameters, since those depend on the method of consumption. - # For C++, we can always use the C bindings, and should do so, since the C++ bindings do not exist in MPI-3 - # whereas the C bindings do, and the C++ bindings never offered any feature advantage over their C counterparts. - if("${LANG}" STREQUAL "Fortran") - if(MPI_${LANG}_HAVE_F08_MODULE) - set(MPI_${LANG}_HIGHEST_METHOD F08_MODULE) - elseif(MPI_${LANG}_HAVE_F90_MODULE) - set(MPI_${LANG}_HIGHEST_METHOD F90_MODULE) - else() - set(MPI_${LANG}_HIGHEST_METHOD F77_HEADER) - endif() - - # Another difference between C and Fortran is that we can't use the preprocessor to determine whether MPI_VERSION - # and MPI_SUBVERSION are provided. These defines did not exist in MPI 1.0 and 1.1 and therefore might not - # exist. For C/C++, test_mpi.c will handle the MPI_VERSION extraction, but for Fortran, we need mpiver.f90. - if(NOT DEFINED MPI_${LANG}_VERSION) - _MPI_try_staged_settings(${LANG} mpiver ${MPI_${LANG}_HIGHEST_METHOD} FALSE) - if(MPI_RESULT_${LANG}_mpiver_${MPI_${LANG}_HIGHEST_METHOD}) - file(STRINGS ${MPI_BIN_FOLDER}/mpiver_${LANG}.bin _MPI_VERSION_STRING LIMIT_COUNT 1 REGEX "INFO:MPI-VER") - if("${_MPI_VERSION_STRING}" MATCHES ".*INFO:MPI-VER\\[([0-9]+)\\.([0-9]+)\\].*") - set(MPI_${LANG}_VERSION_MAJOR "${CMAKE_MATCH_1}") - set(MPI_${LANG}_VERSION_MINOR "${CMAKE_MATCH_2}") - set(MPI_${LANG}_VERSION "${MPI_${LANG}_VERSION_MAJOR}.${MPI_${LANG}_VERSION_MINOR}") - endif() - endif() - endif() - - # Finally, we want to find out which capabilities a given interface supports, compare the MPI-3 standard. - # This is determined by interface specific parameters MPI_SUBARRAYS_SUPPORTED and MPI_ASYNC_PROTECTS_NONBLOCKING - # and might vary between the different methods of consumption. - if(MPI_DETERMINE_Fortran_CAPABILITIES AND NOT MPI_Fortran_CAPABILITIES_DETERMINED) - foreach(mpimethod IN ITEMS F08_MODULE F90_MODULE F77_HEADER) - if(MPI_${LANG}_HAVE_${mpimethod}) - set(MPI_${LANG}_${mpimethod}_SUBARRAYS FALSE) - set(MPI_${LANG}_${mpimethod}_ASYNCPROT FALSE) - _MPI_try_staged_settings(${LANG} fortranparam_mpi ${mpimethod} TRUE) - if(MPI_RESULT_${LANG}_fortranparam_mpi_${mpimethod} AND - NOT "${MPI_RUN_RESULT_${LANG}_fortranparam_mpi_${mpimethod}}" STREQUAL "FAILED_TO_RUN") - if("${MPI_RUN_OUTPUT_${LANG}_fortranparam_mpi_${mpimethod}}" MATCHES - ".*INFO:SUBARRAYS\\[ *([TF]) *\\]-ASYNCPROT\\[ *([TF]) *\\].*") - if("${CMAKE_MATCH_1}" STREQUAL "T") - set(MPI_${LANG}_${mpimethod}_SUBARRAYS TRUE) - endif() - if("${CMAKE_MATCH_2}" STREQUAL "T") - set(MPI_${LANG}_${mpimethod}_ASYNCPROT TRUE) - endif() - endif() - endif() - endif() - endforeach() - set(MPI_Fortran_CAPABILITIES_DETERMINED TRUE) - endif() - else() - set(MPI_${LANG}_HIGHEST_METHOD normal) - - # By the MPI-2 standard, MPI_VERSION and MPI_SUBVERSION are valid for both C and C++ bindings. - if(NOT DEFINED MPI_${LANG}_VERSION) - file(STRINGS ${MPI_BIN_FOLDER}/test_mpi_${LANG}.bin _MPI_VERSION_STRING LIMIT_COUNT 1 REGEX "INFO:MPI-VER") - if("${_MPI_VERSION_STRING}" MATCHES ".*INFO:MPI-VER\\[([0-9]+)\\.([0-9]+)\\].*") - set(MPI_${LANG}_VERSION_MAJOR "${CMAKE_MATCH_1}") - set(MPI_${LANG}_VERSION_MINOR "${CMAKE_MATCH_2}") - set(MPI_${LANG}_VERSION "${MPI_${LANG}_VERSION_MAJOR}.${MPI_${LANG}_VERSION_MINOR}") - endif() - endif() - endif() - - unset(MPI_BIN_FOLDER) - - # At this point, we have dealt with determining the MPI version and parameters for each Fortran method available. - # The one remaining issue is to determine which MPI library is installed. - # Determining the version and vendor of the MPI library is only possible via MPI_Get_library_version() at runtime, - # and therefore we cannot do this while cross-compiling (a user may still define MPI_<lang>_LIBRARY_VERSION_STRING - # themselves and we'll attempt splitting it, which is equivalent to provide the try_run output). - # It's also worth noting that the installed version string can depend on the language, or on the system the binary - # runs on if MPI is not statically linked. - if(MPI_DETERMINE_LIBRARY_VERSION AND NOT MPI_${LANG}_LIBRARY_VERSION_STRING) - _MPI_try_staged_settings(${LANG} libver_mpi ${MPI_${LANG}_HIGHEST_METHOD} TRUE) - if(MPI_RESULT_${LANG}_libver_mpi_${MPI_${LANG}_HIGHEST_METHOD} AND - "${MPI_RUN_RESULT_${LANG}_libver_mpi_${MPI_${LANG}_HIGHEST_METHOD}}" EQUAL "0") - string(STRIP "${MPI_RUN_OUTPUT_${LANG}_libver_mpi_${MPI_${LANG}_HIGHEST_METHOD}}" - MPI_${LANG}_LIBRARY_VERSION_STRING) - else() - set(MPI_${LANG}_LIBRARY_VERSION_STRING "NOTFOUND") - endif() - endif() - endif() - - set(MPI_${LANG}_FIND_QUIETLY ${MPI_FIND_QUIETLY}) - set(MPI_${LANG}_FIND_VERSION ${MPI_FIND_VERSION}) - set(MPI_${LANG}_FIND_VERSION_EXACT ${MPI_FIND_VERSION_EXACT}) - - unset(MPI_${LANG}_REQUIRED_VARS) - if (NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}") - foreach(mpilibname IN LISTS MPI_${LANG}_LIB_NAMES) - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${mpilibname}_LIBRARY") - endforeach() - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_LIB_NAMES") - if("${LANG}" STREQUAL "Fortran") - # For Fortran we only need one of the module or header directories to have *some* support for MPI. - if(NOT MPI_${LANG}_MODULE_DIR) - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_F77_HEADER_DIR") - endif() - if(NOT MPI_${LANG}_F77_HEADER_DIR) - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_MODULE_DIR") - endif() - else() - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_HEADER_DIR") - endif() - if(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS) - foreach(mpiincvar IN LISTS MPI_${LANG}_ADDITIONAL_INCLUDE_VARS) - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${mpiincvar}_INCLUDE_DIR") - endforeach() - endif() - # Append the works variable now. If the settings did not work, this will show up properly. - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_WORKS") - else() - # If the compiler worked implicitly, use its path as output. - # Should the compiler variable be set, we also require it to work. - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_COMPILER") - if(MPI_${LANG}_COMPILER) - list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${LANG}_WORKS") - endif() - endif() - find_package_handle_standard_args(MPI_${LANG} REQUIRED_VARS ${MPI_${LANG}_REQUIRED_VARS} - VERSION_VAR MPI_${LANG}_VERSION) - - if(DEFINED MPI_${LANG}_VERSION) - if(NOT _MPI_MIN_VERSION OR _MPI_MIN_VERSION VERSION_GREATER MPI_${LANG}_VERSION) - set(_MPI_MIN_VERSION MPI_${LANG}_VERSION) - endif() - endif() - endif() -endforeach() - -unset(_MPI_REQ_VARS) -foreach(LANG IN ITEMS C CXX Fortran) - if((NOT MPI_FIND_COMPONENTS AND CMAKE_${LANG}_COMPILER_LOADED) OR LANG IN_LIST MPI_FIND_COMPONENTS) - list(APPEND _MPI_REQ_VARS "MPI_${LANG}_FOUND") - endif() -endforeach() - -if(MPICXX IN_LIST MPI_FIND_COMPONENTS) - list(APPEND _MPI_REQ_VARS "MPI_MPICXX_FOUND") -endif() - -find_package_handle_standard_args(MPI - REQUIRED_VARS ${_MPI_REQ_VARS} - VERSION_VAR ${_MPI_MIN_VERSION} - HANDLE_COMPONENTS) - -#============================================================================= -# More backward compatibility stuff - -# For compatibility reasons, we also define MPIEXEC -set(MPIEXEC "${MPIEXEC_EXECUTABLE}") - -# Copy over MPI_<LANG>_INCLUDE_PATH from the assembled INCLUDE_DIRS. -foreach(LANG IN ITEMS C CXX Fortran) - if(MPI_${LANG}_FOUND) - set(MPI_${LANG}_INCLUDE_PATH "${MPI_${LANG}_INCLUDE_DIRS}") - unset(MPI_${LANG}_COMPILE_FLAGS) - if(MPI_${LANG}_COMPILE_OPTIONS) - set(MPI_${LANG}_COMPILE_FLAGS "${MPI_${LANG}_COMPILE_OPTIONS}") - endif() - if(MPI_${LANG}_COMPILE_DEFINITIONS) - foreach(_MPI_DEF IN LISTS MPI_${LANG}_COMPILE_DEFINITIONS) - string(APPEND MPI_${LANG}_COMPILE_FLAGS " -D${_MPI_DEF}") - endforeach() - endif() - endif() -endforeach() - -# Bare MPI sans ${LANG} vars are set to CXX then C, depending on what was found. -# This mimics the behavior of the old language-oblivious FindMPI. -set(_MPI_OLD_VARS COMPILER INCLUDE_PATH COMPILE_FLAGS LINK_FLAGS LIBRARIES) -if (MPI_CXX_FOUND) - foreach (var ${_MPI_OLD_VARS}) - set(MPI_${var} ${MPI_CXX_${var}}) - endforeach() -elseif (MPI_C_FOUND) - foreach (var ${_MPI_OLD_VARS}) - set(MPI_${var} ${MPI_C_${var}}) - endforeach() -endif() - -# Chop MPI_LIBRARIES into the old-style MPI_LIBRARY and MPI_EXTRA_LIBRARY, and set them in cache. -if (MPI_LIBRARIES) - list(GET MPI_LIBRARIES 0 MPI_LIBRARY_WORK) - set(MPI_LIBRARY "${MPI_LIBRARY_WORK}") - unset(MPI_LIBRARY_WORK) -else() - set(MPI_LIBRARY "MPI_LIBRARY-NOTFOUND") -endif() - -list(LENGTH MPI_LIBRARIES MPI_NUMLIBS) -if (MPI_NUMLIBS GREATER 1) - set(MPI_EXTRA_LIBRARY_WORK "${MPI_LIBRARIES}") - list(REMOVE_AT MPI_EXTRA_LIBRARY_WORK 0) - set(MPI_EXTRA_LIBRARY "${MPI_EXTRA_LIBRARY_WORK}") - unset(MPI_EXTRA_LIBRARY_WORK) -else() - set(MPI_EXTRA_LIBRARY "MPI_EXTRA_LIBRARY-NOTFOUND") -endif() -set(MPI_IGNORE_LEGACY_VARIABLES TRUE) -#============================================================================= - -# unset these vars to cleanup namespace -unset(_MPI_OLD_VARS) -unset(_MPI_PREFIX_PATH) -unset(_MPI_BASE_DIR) -foreach (lang C CXX Fortran) - unset(_MPI_${LANG}_COMPILER_NAMES) -endforeach() - -cmake_policy(POP) diff --git a/config/cmake_ext_mod/FindMPI/fortranparam_mpi.f90.in b/config/cmake_ext_mod/FindMPI/fortranparam_mpi.f90.in deleted file mode 100644 index 30f912c..0000000 --- a/config/cmake_ext_mod/FindMPI/fortranparam_mpi.f90.in +++ /dev/null @@ -1,4 +0,0 @@ - program mpi_ver - @MPI_Fortran_INCLUDE_LINE@ - print *, 'INFO:SUBARRAYS[', MPI_SUBARRAYS_SUPPORTED, ']-ASYNCPROT[', MPI_ASYNC_PROTECTS_NONBLOCKING, ']' - end program mpi_ver diff --git a/config/cmake_ext_mod/FindMPI/libver_mpi.c b/config/cmake_ext_mod/FindMPI/libver_mpi.c deleted file mode 100644 index be9d19d..0000000 --- a/config/cmake_ext_mod/FindMPI/libver_mpi.c +++ /dev/null @@ -1,19 +0,0 @@ -#include <mpi.h> - -#ifdef __cplusplus -#include <cstdio> -#else -#include <stdio.h> -#endif - -int main(int argc, char* argv[]) -{ - char mpilibver_str[MPI_MAX_LIBRARY_VERSION_STRING]; - int mpilibver_len; - MPI_Get_library_version(mpilibver_str, &mpilibver_len); -#ifdef __cplusplus - std::puts(mpilibver_str); -#else - puts(mpilibver_str); -#endif -} diff --git a/config/cmake_ext_mod/FindMPI/libver_mpi.f90.in b/config/cmake_ext_mod/FindMPI/libver_mpi.f90.in deleted file mode 100644 index 7938587..0000000 --- a/config/cmake_ext_mod/FindMPI/libver_mpi.f90.in +++ /dev/null @@ -1,7 +0,0 @@ - program mpi_ver - @MPI_Fortran_INCLUDE_LINE@ - character(len=MPI_MAX_LIBRARY_VERSION_STRING) :: mpilibver_str - integer(kind=MPI_INTEGER_KIND) :: ierror, reslen - call MPI_GET_LIBRARY_VERSION(mpilibver_str, reslen, ierror) - print *, mpilibver_str - end program mpi_ver diff --git a/config/cmake_ext_mod/FindMPI/mpiver.f90.in b/config/cmake_ext_mod/FindMPI/mpiver.f90.in deleted file mode 100644 index a254523..0000000 --- a/config/cmake_ext_mod/FindMPI/mpiver.f90.in +++ /dev/null @@ -1,10 +0,0 @@ - program mpi_ver - @MPI_Fortran_INCLUDE_LINE@ - integer(kind=kind(MPI_VERSION)), parameter :: zero = ichar('0') - character, dimension(17), parameter :: mpiver_str =& - (/ 'I', 'N', 'F', 'O', ':', 'M', 'P', 'I', '-', 'V', 'E', 'R', '[', & - char(zero + MPI_VERSION), & - '.', & - char(zero + MPI_SUBVERSION), ']' /) - print *, mpiver_str - end program mpi_ver diff --git a/config/cmake_ext_mod/FindMPI/test_mpi.c b/config/cmake_ext_mod/FindMPI/test_mpi.c deleted file mode 100644 index b8a308a..0000000 --- a/config/cmake_ext_mod/FindMPI/test_mpi.c +++ /dev/null @@ -1,37 +0,0 @@ -#include <mpi.h> - -#ifdef __cplusplus -#include <cstdio> -#else -#include <stdio.h> -#endif - -#if defined(MPI_VERSION) && defined(MPI_SUBVERSION) -const char mpiver_str[] = { 'I', 'N', - 'F', 'O', - ':', 'M', - 'P', 'I', - '-', 'V', - 'E', 'R', - '[', ('0' + MPI_VERSION), - '.', ('0' + MPI_SUBVERSION), - ']', '\0' }; -#endif - -int main(int argc, char* argv[]) -{ -#if defined(MPI_VERSION) && defined(MPI_SUBVERSION) -#ifdef __cplusplus - std::puts(mpiver_str); -#else - puts(mpiver_str); -#endif -#endif -#ifdef TEST_MPI_MPICXX - MPI::MPI_Init(&argc, &argv); - MPI::MPI_Finalize(); -#else - MPI_Init(&argc, &argv); - MPI_Finalize(); -#endif -} diff --git a/config/cmake_ext_mod/FindMPI/test_mpi.f90.in b/config/cmake_ext_mod/FindMPI/test_mpi.f90.in deleted file mode 100644 index 4d43a04..0000000 --- a/config/cmake_ext_mod/FindMPI/test_mpi.f90.in +++ /dev/null @@ -1,6 +0,0 @@ - program hello - @MPI_Fortran_INCLUDE_LINE@ - integer@MPI_Fortran_INTEGER_LINE@ ierror - call MPI_INIT(ierror) - call MPI_FINALIZE(ierror) - end program diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt index e9430d9..4da8405 100644 --- a/examples/CMakeLists.txt +++ b/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_EXAMPLES) #----------------------------------------------------------------------------- diff --git a/fortran/CMakeLists.txt b/fortran/CMakeLists.txt index 7864f2d..8c7b8f6 100644 --- a/fortran/CMakeLists.txt +++ b/fortran/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_F90 C CXX Fortran) if (H5_HAVE_PARALLEL) diff --git a/fortran/examples/CMakeLists.txt b/fortran/examples/CMakeLists.txt index 9adf8bd..8b7333a 100644 --- a/fortran/examples/CMakeLists.txt +++ b/fortran/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_F90_EXAMPLES C CXX Fortran) # -------------------------------------------------------------------- # Notes: When creating examples they should be prefixed diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt index 9bf1719..64cf739 100644 --- a/fortran/src/CMakeLists.txt +++ b/fortran/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_F90_SRC C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt index 67d377f..b71a8eb 100644 --- a/fortran/test/CMakeLists.txt +++ b/fortran/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_FORTRAN_TESTS C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/fortran/testpar/CMakeLists.txt b/fortran/testpar/CMakeLists.txt index b1cf9d2..979d305 100644 --- a/fortran/testpar/CMakeLists.txt +++ b/fortran/testpar/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_FORTRAN_TESTPAR C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/hl/CMakeLists.txt b/hl/CMakeLists.txt index eac6df0..54d5976 100644 --- a/hl/CMakeLists.txt +++ b/hl/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL C CXX) #----------------------------------------------------------------------------- diff --git a/hl/c++/CMakeLists.txt b/hl/c++/CMakeLists.txt index c5b4a72..71e5bb3 100644 --- a/hl/c++/CMakeLists.txt +++ b/hl/c++/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_CPP) #----------------------------------------------------------------------------- diff --git a/hl/c++/examples/CMakeLists.txt b/hl/c++/examples/CMakeLists.txt index bf96fba..25158f2 100644 --- a/hl/c++/examples/CMakeLists.txt +++ b/hl/c++/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_CPP_EXAMPLES) #----------------------------------------------------------------------------- diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt index 0f187c5..c0cc09e 100644 --- a/hl/c++/src/CMakeLists.txt +++ b/hl/c++/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_CPP_SRC) #----------------------------------------------------------------------------- @@ -69,3 +69,50 @@ if (HDF5_EXPORTED_TARGETS) INCLUDES DESTINATION include ) endif () + +#----------------------------------------------------------------------------- +# Create pkgconfig files +#----------------------------------------------------------------------------- +set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) +set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) +set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) +set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) +set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}") +set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") + +set (_PKG_CONFIG_LIBS_PRIVATE) + +set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_CPP_LIB_CORENAME}") +if (BUILD_SHARED_LIBS) + set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_HL_CPP_LIB_CORENAME}") +endif () + +set (_PKG_CONFIG_REQUIRES "${HDF5_HL_LIB_CORENAME}") +set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_HL_LIB_CORENAME}") + +configure_file ( + ${HDF_RESOURCES_DIR}/libhdf5.pc.in + ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_HL_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + @ONLY +) +install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_HL_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig + COMPONENT hlcpplibraries +) + +if (NOT WIN32) + set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER}) + configure_file ( + ${HDF_RESOURCES_DIR}/libh5cc.in + ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++ + @ONLY + ) + install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++ + DESTINATION ${HDF5_INSTALL_BIN_DIR} + PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE + COMPONENT hlcpplibraries + ) +endif () + diff --git a/hl/c++/test/CMakeLists.txt b/hl/c++/test/CMakeLists.txt index 28b5eb8..b48d147 100644 --- a/hl/c++/test/CMakeLists.txt +++ b/hl/c++/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_CPP_TEST) #----------------------------------------------------------------------------- diff --git a/hl/examples/CMakeLists.txt b/hl/examples/CMakeLists.txt index dd94da0..79dfee1 100644 --- a/hl/examples/CMakeLists.txt +++ b/hl/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_EXAMPLES ) #----------------------------------------------------------------------------- diff --git a/hl/fortran/CMakeLists.txt b/hl/fortran/CMakeLists.txt index 37c5cc9..7955de2 100644 --- a/hl/fortran/CMakeLists.txt +++ b/hl/fortran/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_F90 C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/hl/fortran/examples/CMakeLists.txt b/hl/fortran/examples/CMakeLists.txt index ff0403a..411ceea 100644 --- a/hl/fortran/examples/CMakeLists.txt +++ b/hl/fortran/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_F90_EXAMPLES C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt index 7a2eff1..82be551 100644 --- a/hl/fortran/src/CMakeLists.txt +++ b/hl/fortran/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT(HDF5_HL_F90_SRC C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/hl/fortran/test/CMakeLists.txt b/hl/fortran/test/CMakeLists.txt index 1ec4b93..5c83d03 100644 --- a/hl/fortran/test/CMakeLists.txt +++ b/hl/fortran/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_FORTRAN_TESTS C CXX Fortran) #----------------------------------------------------------------------------- diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt index d21a3ea..0daa86e 100644 --- a/hl/src/CMakeLists.txt +++ b/hl/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_SRC) #----------------------------------------------------------------------------- @@ -88,3 +88,49 @@ if (HDF5_EXPORTED_TARGETS) INCLUDES DESTINATION include ) endif () + +#----------------------------------------------------------------------------- +# Create pkgconfig files +#----------------------------------------------------------------------------- +set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) +set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) +set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) +set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) +set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}") +set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") + +set (_PKG_CONFIG_LIBS_PRIVATE) + +set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_HL_LIB_CORENAME}") +if (BUILD_SHARED_LIBS) + set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_HL_LIB_CORENAME}") +endif () + +set (_PKG_CONFIG_REQUIRES "${HDF5_LIB_CORENAME}") +set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_LIB_CORENAME}") + +configure_file ( + ${HDF_RESOURCES_DIR}/libhdf5.pc.in + ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_HL_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + @ONLY +) +install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_HL_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig + COMPONENT hllibraries +) + +if (NOT WIN32) + set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER}) + configure_file ( + ${HDF_RESOURCES_DIR}/libh5cc.in + ${HDF5_BINARY_DIR}/CMakeFiles/h5chl + @ONLY + ) + install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5chl + DESTINATION ${HDF5_INSTALL_BIN_DIR} + PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE + COMPONENT hllibraries + ) +endif () diff --git a/hl/test/CMakeLists.txt b/hl/test/CMakeLists.txt index 1f2ea17..6b3c764 100644 --- a/hl/test/CMakeLists.txt +++ b/hl/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_TEST) # -------------------------------------------------------------------- # Notes: When creating unit test executables they should be prefixed diff --git a/hl/tools/CMakeLists.txt b/hl/tools/CMakeLists.txt index ab71a7e..67e0ccb 100644 --- a/hl/tools/CMakeLists.txt +++ b/hl/tools/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_TOOLS C CXX) add_subdirectory (gif2h5) diff --git a/hl/tools/gif2h5/CMakeLists.txt b/hl/tools/gif2h5/CMakeLists.txt index b50bbf7..2697dfd 100644 --- a/hl/tools/gif2h5/CMakeLists.txt +++ b/hl/tools/gif2h5/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_TOOLS_GIF2H5) #----------------------------------------------------------------------------- diff --git a/hl/tools/h5watch/CMakeLists.txt b/hl/tools/h5watch/CMakeLists.txt index a1697cd..5de655e 100644 --- a/hl/tools/h5watch/CMakeLists.txt +++ b/hl/tools/h5watch/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_HL_TOOLS_H5WATCH) #----------------------------------------------------------------------------- diff --git a/java/CMakeLists.txt b/java/CMakeLists.txt index d8cd358..fc057f7 100644 --- a/java/CMakeLists.txt +++ b/java/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT ( HDF5_JAVA C Java ) set (CMAKE_MODULE_PATH "${HDF_RESOURCES_DIR};${HDF_RESOURCES_EXT_DIR}") diff --git a/java/examples/CMakeLists.txt b/java/examples/CMakeLists.txt index d43b49f..3d1e30e 100644 --- a/java/examples/CMakeLists.txt +++ b/java/examples/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDFJAVA_EXAMPLES) add_subdirectory (datasets) diff --git a/java/examples/datasets/CMakeLists.txt b/java/examples/datasets/CMakeLists.txt index ed4559c..6a90cd1 100644 --- a/java/examples/datasets/CMakeLists.txt +++ b/java/examples/datasets/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDFJAVA_EXAMPLES_DATASETS Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/java/examples/datatypes/CMakeLists.txt b/java/examples/datatypes/CMakeLists.txt index 71cf83e..73111ed 100644 --- a/java/examples/datatypes/CMakeLists.txt +++ b/java/examples/datatypes/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDFJAVA_EXAMPLES_DATATYPES Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt index dc5d834..6b55359 100644 --- a/java/examples/groups/CMakeLists.txt +++ b/java/examples/groups/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDFJAVA_EXAMPLES_GROUPS Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/java/examples/intro/CMakeLists.txt b/java/examples/intro/CMakeLists.txt index 59fe48b..65db3fe 100644 --- a/java/examples/intro/CMakeLists.txt +++ b/java/examples/intro/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDFJAVA_EXAMPLES_INTRO Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/java/src/CMakeLists.txt b/java/src/CMakeLists.txt index 7075d32..0c00923 100644 --- a/java/src/CMakeLists.txt +++ b/java/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT ( HDF5_JAVA_SRC C Java ) #----------------------------------------------------------------------------- diff --git a/java/src/hdf/CMakeLists.txt b/java/src/hdf/CMakeLists.txt index 35b436d..ecff984 100644 --- a/java/src/hdf/CMakeLists.txt +++ b/java/src/hdf/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_JAVA_HDF) add_subdirectory (hdf5lib) diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt index 1f2587e..9506fc1 100644 --- a/java/src/hdf/hdf5lib/CMakeLists.txt +++ b/java/src/hdf/hdf5lib/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_JAVA_HDF_HDF5 Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt index 8ab275e..96e7035 100644 --- a/java/src/jni/CMakeLists.txt +++ b/java/src/jni/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_JAVA_JNI C CXX) set (HDF5_JAVA_JNI_CSRCS diff --git a/java/test/CMakeLists.txt b/java/test/CMakeLists.txt index 329c602..6158055 100644 --- a/java/test/CMakeLists.txt +++ b/java/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_JAVA_TEST Java) set (CMAKE_VERBOSE_MAKEFILE 1) diff --git a/release_docs/INSTALL b/release_docs/INSTALL index 2dcb9be..3709a58 100644 --- a/release_docs/INSTALL +++ b/release_docs/INSTALL @@ -305,7 +305,7 @@ CONTENTS to enable symbolic debugging of a production version of HDF5, one might say: - $ CFLAGS=-g ./configure --enable-production + $ CFLAGS=-g ./configure --enable-build-mode=production 4.3.5. Compiling HDF5 wrapper libraries One can optionally build the Fortran and/or C++ interfaces to the @@ -414,35 +414,35 @@ CONTENTS The library can be compiled to provide symbolic debugging support so it can be debugged with gdb, dbx, ddd, etc., or it can be compiled with various optimizations. To compile for symbolic - debugging (the default for snapshots), say `--disable-production'; - to compile with optimizations (the default for supported public - releases), say `--enable-production'. On some systems the library - can also be compiled for profiling with gprof by saying + debugging (the default for snapshots), say + `--enable-build-mode=production'; to compile with optimizations + (the default for supported public releases), + say `--enable-build-mode=production'. On some systems the + library can also be compiled for profiling with gprof by saying `--enable-production=profile'. - $ ./configure --disable-production #symbolic debugging - $ ./configure --enable-production #optimized code - $ ./configure --enable-production=profile #for use with gprof + $ ./configure --enable-build-mode=debug #symbolic debugging + $ ./configure --enable-build-mode=production #optimized code + $ ./configure --enable-production=profile #for use with gprof Regardless of whether support for symbolic debugging is enabled, the library can also perform runtime debugging of certain packages (such as type conversion execution times and extensive invariant - condition checking). To enable this debugging, supply a - comma-separated list of package names to to the `--enable-debug' - switch. See "Debugging HDF5 Applications" for a list of package - names: + condition checking). To enable this debugging, supply a + comma-separated list of package names to the `--enable-internal-debug' + switch. See "Debugging HDF5 Applications" for a list of package names: http://www.hdfgroup.org/HDF5/doc/H5.user/Debugging.html - Debugging can be disabled by saying `--disable-debug'. + Debugging can be disabled by saying `--disable-internal-debug'. The default debugging level for snapshots is a subset of the available packages; the default for supported releases is no debugging (debugging can incur a significant runtime penalty). - $ ./configure --enable-debug=s,t #debug only H5S and H5T - $ ./configure --enable-debug #debug normal packages - $ ./configure --enable-debug=all #debug all packages - $ ./configure --disable-debug #no debugging + $ ./configure --enable-internal-debug=s,t #debug only H5S and H5T + $ ./configure --enable-internal-debug #debug normal packages + $ ./configure --enable-internal-debug=all #debug all packages + $ ./configure --disable-internal-debug #no debugging HDF5 can also print a trace of all API function calls, their arguments, and the return values. To enable or disable the @@ -466,15 +466,17 @@ CONTENTS http://www.hdfgroup.org/HDF5/doc/TechNotes/ThreadSafeLibrary.html 4.3.12. Backward compatibility - The 1.8 version of the HDF5 Library can be configured to operate - identically to the v1.6 library with the + The 1.10 version of the HDF5 Library can be configured to operate + identically to the v1.8 library with the + --with-default-api-version=v18 + configure flag, or identically to the v1.6 library with the --with-default-api-version=v16 configure flag. This allows existing code to be compiled with the - v1.8 library without requiring immediate changes to the application + v1.10 library without requiring immediate changes to the application source code. For addtional configuration options and other details, see "API Compatibility Macros in HDF5": - http://www.hdfgroup.org/HDF5/doc/RM/APICompatMacros.html + https://support.hdfgroup.org/HDF5/doc/RM/APICompatMacros.html 4.4. Building The library, confidence tests, and programs can be built by diff --git a/release_docs/INSTALL_CMake.txt b/release_docs/INSTALL_CMake.txt index 87d7886..1861d92 100644 --- a/release_docs/INSTALL_CMake.txt +++ b/release_docs/INSTALL_CMake.txt @@ -648,7 +648,7 @@ adding an option (${CTEST_SCRIPT_ARG}) to the platform configuration script. ### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log ### ############################################################################################# -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR) +cmake_minimum_required (VERSION 3.10) ############################################################################ # Usage: # ctest -S HDF5config.cmake,OPTION=VALUE -C Release -VV -O test.log diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index c62e8d9..da46821 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -56,6 +56,26 @@ New Features ------------- - CMake + Change minimum version to 3.10. + + This change removes the need to support a copy of the FindMPI.cmake module, + which has been removed, along with its subfolder in the config/cmake_ext_mod + location. + + (ADB - 2018/03/09) + + - CMake + + Add pkg-config file generation + + Added pkg-config file generation for the C, C++, HL, and HL C++ libraries. + In addition, builds on linux will create h5cXXX scripts that use the pkg-config + files. This is a limited implementation of a script like autotools h5cc. + + (ADB - 2018/03/08, HDFFV-4359) + + - CMake + Refactor use of CMAKE_BUILD_TYPE for new variable, which understands the type of generator in use. @@ -204,7 +224,63 @@ New Features C++ Library: ------------ - - + - The following wrappers are added: + + + H5Lcreate_soft: + // Creates a soft link from link_name to target_name. + void link(const char *target_name, const char *link_name,...) + void link(const H5std_string& target_name,...) + + + H5Lcreate_hard: + // Creates a hard link from new_name to curr_name. + void link(const char *curr_name, const Group& new_loc,...) + void link(const H5std_string& curr_name, const Group& new_loc,...) + + // Creates a hard link from new_name to curr_name in same location. + void link(const char *curr_name, const hid_t same_loc,...) + void link(const H5std_string& curr_name, const hid_t same_loc,...) + + Note: previous version of H5Location::link will be deprecated. + + + H5Lcopy: + // Copy an object from a group of file to another. + void copyLink(const char *src_name, const Group& dst,...) + void copyLink(const H5std_string& src_name, const Group& dst,...) + + // Copy an object from a group of file to the same location. + void copyLink(const char *src_name, const char *dst_name,...) + void copyLink(const H5std_string& src_name,...) + + + H5Lmove: + // Rename an object in a group or file to a new location. + void moveLink(const char* src_name, const Group& dst,...) + void moveLink(const H5std_string& src_name, const Group& dst,...) + + // Rename an object in a group or file to the same location. + void moveLink(const char* src_name, const char* dst_name,...) + void moveLink(const H5std_string& src_name,...) + + Note: previous version H5Location::move will be deprecated. + + + H5Ldelete: + // Removes the specified link from this location. + void unlink(const char *link_name, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) + void unlink(const H5std_string& link_name, + const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) + + - Added class LinkCreatPropList + + - Added overloaded functions H5Location::createGroup to take a link + creation property list + Group createGroup(const char* name, const LinkCreatPropList& lcpl) + Group createGroup(const H5std_string& name, const LinkCreatPropList& lcpl) + - Added wrapper for H5Lget_info() to H5Location + // Returns the information of the named link. + H5L_info_t getLinkInfo(const H5std_string& link_name,...) + + (BMR - 2018/03/11, HDFFV-10149) + Java Library: ---------------- @@ -298,6 +374,18 @@ Bug Fixes since HDF5-1.10.1 release (VC - 2017/11/28, HDFFV-9947) + - H5Pset_evict_on_close in H5Pfapl.c + + Changed the minor error number from H5E_CANTSET to H5E_UNSUPPORTED for + parallel library. + (ADB - 2018/03/6, HDFFV-10414) + + - Utility function can not handle lowercase Windows drive letters + + Added call to toupper function for drive letter. + + (ADB - 2017/12/18, HDFFV-10307) + - filter plugin handling in H5PL.c and H5Z.c It was discovered that the dynamic loading process used by @@ -409,6 +497,63 @@ Bug Fixes since HDF5-1.10.1 release (RAW - 2017/12/01, HDFFV-10272) + - If an HDF5 file contains a filter pipeline message with a 'number of + filters' field that exceeds the maximum number of allowed filters, + the error handling code will attempt to dereference a NULL pointer. + + This issue was reported to The HDF Group as issue #CVE-2017-17505. + + NOTE: The HDF5 C library cannot produce such a file. This condition + should only occur in a corrupt (or deliberately altered) file + or a file created by third-party software. + + This problem arose because the error handling code assumed that + the 'number of filters' field implied that a dynamic array of that + size had already been created and that the cleanup code should + iterate over that array and clean up each element's resources. If + an error occurred before the array has been allocated, this will + not be true. + + This has been changed so that the number of filters is set to + zero on errors. Additionally, the filter array traversal in the + error handling code now requires that the filter array not be NULL. + + (DER - 2018/02/06, HDFFV-10354) + + - If an HDF5 file contains a filter pipeline message which contains + a 'number of filters' field that exceeds the actual number of + filters in the message, the HDF5 C library will read off the end of + the read buffer. + + This issue was reported to The HDF Group as issue #CVE-2017-17506. + + NOTE: The HDF5 C library cannot produce such a file. This condition + should only occur in a corrupt (or deliberately altered) file + or a file created by third-party software. + + The problem was fixed by passing the buffer size with the buffer + and ensuring that the pointer cannot be incremented off the end + of the buffer. A mismatch between the number of filters declared + and the actual number of filters will now invoke normal HDF5 + error handling. + + (DER - 2018/02/26, HDFFV-10355) + + - If an HDF5 file contains a malformed compound type which contains + a member of size zero, a division by zero error will occur while + processing the type. + + This issue was reported to The HDF Group as issue #CVE-2017-17508. + + NOTE: The HDF5 C library cannot produce such a file. This condition + should only occur in a corrupt (or deliberately altered) file + or a file created by third-party software. + + Checking for zero before dividing fixes the problem. Instead of the + division by zero, the normal HDF5 error handling is invoked. + + (DER - 2018/02/26, HDFFV-10357) + Configuration ------------- - CMake diff --git a/release_docs/USING_HDF5_CMake.txt b/release_docs/USING_HDF5_CMake.txt index 8dd47c2..b516056 100644 --- a/release_docs/USING_HDF5_CMake.txt +++ b/release_docs/USING_HDF5_CMake.txt @@ -180,7 +180,7 @@ Given the preconditions in section I, create a CMakeLists.txt file at the source root. Include the following text in the file: ########################################################## -cmake_minimum_required (VERSION 3.10.1) +cmake_minimum_required (VERSION 3.10) project (HDF5MyApp C CXX) set (LIB_TYPE STATIC) # or SHARED @@ -229,7 +229,7 @@ your application with an installed HDF5 binary. ctest use of HDF5_Examples.cmake and HDF5_Examples_options.cmake ======================================================================== -cmake_minimum_required (VERSION 3.3.2 FATAL_ERROR) +cmake_minimum_required (VERSION 3.10) ############################################################################################################### # This script will build and run the examples from a folder # Execute from a command line: diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index bf7fb07..c506ebb 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_SRC C CXX) #----------------------------------------------------------------------------- @@ -991,3 +991,51 @@ if (HDF5_EXPORTED_TARGETS) INCLUDES DESTINATION include ) endif () + +#----------------------------------------------------------------------------- +# Create pkgconfig files +#----------------------------------------------------------------------------- +set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) +set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) +set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) +set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) +set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}") +set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") + +foreach (libs ${LINK_LIBS} ${LINK_COMP_LIBS}) + set (_PKG_CONFIG_LIBS_PRIVATE "${_PKG_CONFIG_LIBS_PRIVATE} -l${libs}") +endforeach () + +set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_LIB_CORENAME}") +if (BUILD_SHARED_LIBS) + set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_LIB_CORENAME}") +endif () + +set (_PKG_CONFIG_REQUIRES) +set (_PKG_CONFIG_REQUIRES_PRIVATE) + +configure_file ( + ${HDF_RESOURCES_DIR}/libhdf5.pc.in + ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + @ONLY +) +install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc + DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig + COMPONENT libraries +) + +if (NOT WIN32) + set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER}) + configure_file ( + ${HDF_RESOURCES_DIR}/libh5cc.in + ${HDF5_BINARY_DIR}/CMakeFiles/h5cc + @ONLY + ) + install ( + FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5cc + DESTINATION ${HDF5_INSTALL_BIN_DIR} + PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE + COMPONENT libraries + ) +endif () diff --git a/src/H5Abtree2.c b/src/H5Abtree2.c index ed67e0f..8b79aa5 100644 --- a/src/H5Abtree2.c +++ b/src/H5Abtree2.c @@ -158,7 +158,7 @@ const H5B2_class_t H5A_BT2_CORDER[1]={{ /* B-tree class information */ *------------------------------------------------------------------------- */ static herr_t -H5A__dense_fh_name_cmp(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5A__dense_fh_name_cmp(const void *obj, size_t obj_len, void *_udata) { H5A_fh_ud_cmp_t *udata = (H5A_fh_ud_cmp_t *)_udata; /* User data for 'op' callback */ H5A_t *attr = NULL; /* Pointer to attribute created from heap object */ @@ -168,7 +168,7 @@ H5A__dense_fh_name_cmp(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_ud FUNC_ENTER_STATIC /* Decode attribute information */ - if(NULL == (attr = (H5A_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_ATTR_ID, (const unsigned char *)obj))) + if(NULL == (attr = (H5A_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_ATTR_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "can't decode attribute") /* Compare the string values */ diff --git a/src/H5Adense.c b/src/H5Adense.c index b1903a4..ba0578e 100644 --- a/src/H5Adense.c +++ b/src/H5Adense.c @@ -843,7 +843,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5A__dense_copy_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5A__dense_copy_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5A_fh_ud_cp_t *udata = (H5A_fh_ud_cp_t *)_udata; /* User data for fractal heap 'op' callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -857,7 +857,7 @@ H5A__dense_copy_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_uda * HDF5 routine, it could attempt to re-protect that direct block for the * heap, causing the HDF5 routine called to fail) */ - if(NULL == (udata->attr = (H5A_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_ATTR_ID, (const unsigned char *)obj))) + if(NULL == (udata->attr = (H5A_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_ATTR_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_ATTR, H5E_CANTDECODE, FAIL, "can't decode attribute") /* Set the creation order index for the attribute */ diff --git a/src/H5Aint.c b/src/H5Aint.c index f1dd41e..55c46f6 100644 --- a/src/H5Aint.c +++ b/src/H5Aint.c @@ -102,6 +102,12 @@ static herr_t H5A__attr_sort_table(H5A_attr_table_t *atable, H5_index_t idx_type /* Package Variables */ /*********************/ +/* Format version bounds for attribute */ +const unsigned H5O_attr_ver_bounds[] = { + H5O_ATTR_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_ATTR_VERSION_3, /* H5F_LIBVER_V18 */ + H5O_ATTR_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /*****************************/ /* Library Private Variables */ @@ -209,18 +215,16 @@ H5A_create(const H5G_loc_t *loc, const char *name, const H5T_t *type, if(H5T_set_loc(attr->shared->dt, loc->oloc->file, H5T_LOC_DISK) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "invalid datatype location") - /* Set the latest format for datatype, if requested */ - if(H5F_USE_LATEST_FLAGS(loc->oloc->file, H5F_LATEST_DATATYPE)) - if(H5T_set_latest_version(attr->shared->dt) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest version of datatype") + /* Set the version for datatype */ + if(H5T_set_version(loc->oloc->file, attr->shared->dt) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set version of datatype") /* Copy the dataspace for the attribute */ attr->shared->ds = H5S_copy(space, FALSE, TRUE); - /* Set the latest format for dataspace, if requested */ - if(H5F_USE_LATEST_FLAGS(loc->oloc->file, H5F_LATEST_DATASPACE)) - if(H5S_set_latest_version(attr->shared->ds) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest version of dataspace") + /* Set the version for dataspace */ + if(H5S_set_version(loc->oloc->file, attr->shared->ds) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set version of dataspace") /* Copy the object header information */ if(H5O_loc_copy(&(attr->oloc), loc->oloc, H5_COPY_DEEP) < 0) @@ -1843,11 +1847,11 @@ done: * Function: H5A_set_version * * Purpose: Sets the correct version to encode attribute with. - * Chooses the oldest version possible, unless the "use the - * latest format" flag is set. + * Chooses the oldest version possible, unless the + * file's low bound indicates otherwise. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * * Programmer: Quincey Koziol * koziol@hdfgroup.org @@ -1859,8 +1863,8 @@ herr_t H5A_set_version(const H5F_t *f, H5A_t *attr) { hbool_t type_shared, space_shared; /* Flags to indicate that shared messages are used for this attribute */ - hbool_t use_latest_format; /* Flag indicating the latest attribute version support is enabled */ - herr_t ret_value = SUCCEED; /* Return value */ + uint8_t version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -1868,9 +1872,6 @@ H5A_set_version(const H5F_t *f, H5A_t *attr) HDassert(f); HDassert(attr); - /* Get the file's 'use the latest attribute version support' flag */ - use_latest_format = H5F_USE_LATEST_FLAGS(f, H5F_LATEST_ATTRIBUTE); - /* Check whether datatype and dataspace are shared */ if(H5O_msg_is_shared(H5O_DTYPE_ID, attr->shared->dt) > 0) type_shared = TRUE; @@ -1883,14 +1884,22 @@ H5A_set_version(const H5F_t *f, H5A_t *attr) space_shared = FALSE; /* Check which version to encode attribute with */ - if(use_latest_format) - attr->shared->version = H5O_ATTR_VERSION_LATEST; /* Write out latest attribute version */ - else if(attr->shared->encoding != H5T_CSET_ASCII) - attr->shared->version = H5O_ATTR_VERSION_3; /* Write version which includes the character encoding */ + if(attr->shared->encoding != H5T_CSET_ASCII) + version = H5O_ATTR_VERSION_3; /* Write version which includes the character encoding */ else if(type_shared || space_shared) - attr->shared->version = H5O_ATTR_VERSION_2; /* Write out version with flag for indicating shared datatype or dataspace */ + version = H5O_ATTR_VERSION_2; /* Write out version with flag for indicating shared datatype or dataspace */ else - attr->shared->version = H5O_ATTR_VERSION_1; /* Write out basic version */ + version = H5O_ATTR_VERSION_1; /* Write out basic version */ + + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(version, (uint8_t)H5O_attr_ver_bounds[H5F_LOW_BOUND(f)]); + + /* Version bounds check */ + if(version > H5O_attr_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_ATTR, H5E_BADRANGE, FAIL, "attribute version out of bounds") + + /* Set the message version */ + attr->shared->version = version; done: FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Cimage.c b/src/H5Cimage.c index 53d1712..be2560f 100644 --- a/src/H5Cimage.c +++ b/src/H5Cimage.c @@ -1382,9 +1382,12 @@ H5C__prep_image_for_file_close(H5F_t *f, hid_t dxpl_id, hbool_t *image_generated * Note that under some error conditions, the superblock will be * undefined in this case as well -- if so, assume that the * superblock does not support superblock extension messages. + * Also verify that the file's high_bound is at least release + * 1.10.x, otherwise cancel the request for a cache image */ if((NULL == f->shared->sblock) || - (f->shared->sblock->super_vers < HDF5_SUPERBLOCK_VERSION_2)) { + (f->shared->sblock->super_vers < HDF5_SUPERBLOCK_VERSION_2) || + (f->shared->high_bound < H5F_LIBVER_V110)) { H5C_cache_image_ctl_t default_image_ctl = H5C__DEFAULT_CACHE_IMAGE_CTL; cache_ptr->image_ctl = default_image_ctl; diff --git a/src/H5Dint.c b/src/H5Dint.c index e45b04d..17b989e 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -623,10 +623,10 @@ done: static herr_t H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type) { - htri_t relocatable; /* Flag whether the type is relocatable */ - htri_t immutable; /* Flag whether the type is immutable */ - hbool_t use_latest_format; /* Flag indicating the 'latest datatype version support' is enabled */ - herr_t ret_value = SUCCEED; /* Return value */ + htri_t relocatable; /* Flag whether the type is relocatable */ + htri_t immutable; /* Flag whether the type is immutable */ + hbool_t use_at_least_v18; /* Flag indicating to use at least v18 format versions */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -643,17 +643,17 @@ H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type) if((immutable = H5T_is_immutable(type)) < 0) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "can't check datatype?") - /* Get the file's 'use the latest datatype version support' flag */ - use_latest_format = H5F_USE_LATEST_FLAGS(file, H5F_LATEST_DATATYPE); + /* To use at least v18 format versions or not */ + use_at_least_v18 = (H5F_LOW_BOUND(file) >= H5F_LIBVER_V18); /* Copy the datatype if it's a custom datatype or if it'll change when it's location is changed */ - if(!immutable || relocatable || use_latest_format) { + if(!immutable || relocatable || use_at_least_v18) { /* Copy datatype for dataset */ if((dset->shared->type = H5T_copy(type, H5T_COPY_ALL)) == NULL) HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy datatype") - /* Convert a datatype (if committed) to a transient type if the committed datatype's file - location is different from the file location where the dataset will be created */ + /* Convert a datatype (if committed) to a transient type if the committed datatype's file + location is different from the file location where the dataset will be created */ if(H5T_convert_committed_datatype(dset->shared->type, file) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't get shared datatype info") @@ -661,14 +661,13 @@ H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type) if(H5T_set_loc(dset->shared->type, file, H5T_LOC_DISK) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't set datatype location") - /* Set the latest format, if requested */ - if(use_latest_format) - if(H5T_set_latest_version(dset->shared->type) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set latest version of datatype") + /* Set the version for datatype */ + if(H5T_set_version(file, dset->shared->type) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set version of datatype") /* Get a datatype ID for the dataset's datatype */ - if((dset->shared->type_id = H5I_register(H5I_DATATYPE, dset->shared->type, FALSE)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register type") + if((dset->shared->type_id = H5I_register(H5I_DATATYPE, dset->shared->type, FALSE)) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register type") } /* end if */ /* Not a custom datatype, just use it directly */ else { @@ -738,7 +737,6 @@ done: static herr_t H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space) { - hbool_t use_latest_format; /* Flag indicating the 'latest dataspace version support' is enabled */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -748,9 +746,6 @@ H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space) HDassert(dset); HDassert(space); - /* Get the file's 'use the latest dataspace version support' flag */ - use_latest_format = H5F_USE_LATEST_FLAGS(file, H5F_LATEST_DATASPACE); - /* Copy dataspace for dataset */ if(NULL == (dset->shared->space = H5S_copy(space, FALSE, TRUE))) HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't copy dataspace") @@ -759,10 +754,9 @@ H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space) if(H5D__cache_dataspace_info(dset) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "can't cache dataspace info") - /* Set the latest format, if requested */ - if(use_latest_format) - if(H5S_set_latest_version(dset->shared->space) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set latest version of datatype") + /* Set the version for dataspace */ + if(H5S_set_version(file, dset->shared->space) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set latest version of datatype") /* Set the dataset's dataspace to 'all' selection */ if(H5S_select_all(dset->shared->space, TRUE) < 0) @@ -794,6 +788,7 @@ H5D__update_oh_info(H5F_t *file, hid_t dxpl_id, H5D_t *dset, hid_t dapl_id) H5D_fill_value_t fill_status; /* Fill value status */ hbool_t fill_changed = FALSE; /* Flag indicating the fill value was changed */ hbool_t layout_init = FALSE; /* Flag to indicate that chunk information was initialized */ + hbool_t use_at_least_v18; /* Flag indicating to use at least v18 format versions */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -808,6 +803,9 @@ H5D__update_oh_info(H5F_t *file, hid_t dxpl_id, H5D_t *dset, hid_t dapl_id) type = dset->shared->type; fill_prop = &dset->shared->dcpl_cache.fill; + /* To use at least v18 format versions or not */ + use_at_least_v18 = (H5F_LOW_BOUND(file) >= H5F_LIBVER_V18); + /* Retrieve "defined" status of fill value */ if(H5P_is_fill_value_defined(fill_prop, &fill_status) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't tell if fill value defined") @@ -886,8 +884,8 @@ H5D__update_oh_info(H5F_t *file, hid_t dxpl_id, H5D_t *dset, hid_t dapl_id) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update new fill value header message") /* If there is valid information for the old fill value struct, add it */ - /* (only if we aren't trying to write the 'latest fill message version support') */ - if(fill_prop->buf && !(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_FILL_MSG))) { + /* (only if we aren't using v18 format versions and above */ + if(fill_prop->buf && !use_at_least_v18) { H5O_fill_t old_fill_prop; /* Copy of fill value property, for writing as "old" fill value */ /* Shallow copy the fill value property */ @@ -922,27 +920,27 @@ H5D__update_oh_info(H5F_t *file, hid_t dxpl_id, H5D_t *dset, hid_t dapl_id) (H5P_exist_plist(dc_plist, H5O_BOGUS_MSG_ID_NAME) > 0) ) { uint8_t bogus_flags = 0; /* Flags for creating "bogus" message */ - unsigned bogus_id; /* "bogus" ID */ + unsigned bogus_id; /* "bogus" ID */ - /* Retrieve "bogus" message ID */ + /* Retrieve "bogus" message ID */ if(H5P_get(dc_plist, H5O_BOGUS_MSG_ID_NAME, &bogus_id) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get bogus ID options") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get bogus ID options") /* Retrieve "bogus" message flags */ if(H5P_get(dc_plist, H5O_BOGUS_MSG_FLAGS_NAME, &bogus_flags) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get bogus message options") /* Add a "bogus" message (for error testing). */ - if(H5O_bogus_oh(file, dxpl_id, oh, bogus_id, (unsigned)bogus_flags) < 0) + if(H5O_bogus_oh(file, dxpl_id, oh, bogus_id, (unsigned)bogus_flags) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create 'bogus' message") } /* end if */ } #endif /* H5O_ENABLE_BOGUS */ /* Add a modification time message, if using older format. */ - /* (If using the latest 'no modification time message' version support, the modification time is part of the object + /* (If using v18 format versions and above, the the modification time is part of the object * header and doesn't use a separate message -QAK) */ - if(!(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_NO_MOD_TIME_MSG))) + if(!use_at_least_v18) if(H5O_touch_oh(file, dxpl_id, oh, TRUE) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to update modification time message") @@ -1174,27 +1172,20 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, NULL, "compact dataset must have early space allocation") } /* end if */ - /* Set the latest version of the layout, pline & fill messages, if requested */ - if(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_DSET_MSG_FLAGS)) { - /* Set the latest version for the I/O pipeline message */ - if(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_PLINE_MSG)) - if(H5O_pline_set_latest_version(&new_dset->shared->dcpl_cache.pline) < 0) + /* Set the version for the I/O pipeline message */ + if(H5O_pline_set_version(file, &new_dset->shared->dcpl_cache.pline) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest version of I/O filter pipeline") - /* Set the latest version for the fill message */ - if(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_FILL_MSG)) - /* Set the latest version for the fill value message */ - if(H5O_fill_set_latest_version(&new_dset->shared->dcpl_cache.fill) < 0) + /* Set the version for the fill message */ + if(H5O_fill_set_version(file, &new_dset->shared->dcpl_cache.fill) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest version of fill value") - /* Set the latest version for the layout message */ - if(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_LAYOUT_MSG)) - /* Set the latest version for the layout message */ - if(H5D__layout_set_latest_version(&new_dset->shared->layout, new_dset->shared->space, &new_dset->shared->dcpl_cache) < 0) + /* Set the latest version for the layout message */ + if(H5D__layout_set_version(file, &new_dset->shared->layout) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest version of layout") - } /* end if */ - else if(new_dset->shared->layout.version >= H5O_LAYOUT_VERSION_4) { - /* Use latest indexing type for layout message version >= 4 */ + + if(new_dset->shared->layout.version >= H5O_LAYOUT_VERSION_4) { + /* Use latest indexing type for layout message version >= 4 */ if(H5D__layout_set_latest_indexing(&new_dset->shared->layout, new_dset->shared->space, &new_dset->shared->dcpl_cache) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, NULL, "can't set latest indexing") } /* end if */ diff --git a/src/H5Dlayout.c b/src/H5Dlayout.c index ec18e86..980b810 100644 --- a/src/H5Dlayout.c +++ b/src/H5Dlayout.c @@ -46,6 +46,12 @@ /* Package Variables */ /*********************/ +/* Format version bounds for layout */ +const unsigned H5O_layout_ver_bounds[] = { + H5O_LAYOUT_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_LAYOUT_VERSION_3, /* H5F_LIBVER_V18 */ /* H5O_LAYOUT_VERSION_DEFAULT */ + H5O_LAYOUT_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /*****************************/ /* Library Private Variables */ @@ -57,6 +63,7 @@ /*******************/ + /*------------------------------------------------------------------------- * Function: H5D__layout_set_io_ops @@ -277,49 +284,47 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__layout_set_latest_version + * Function: H5D__layout_set_version * - * Purpose: Set the encoding for a layout to the latest version. - * Part of the coding in this routine is moved to - * H5D__layout_set_latest_indexing(). + * Purpose: Set the version to encode a layout with. * * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, January 15, 2009 + * Programmer: Vailin Choi; December 2017 * *------------------------------------------------------------------------- */ herr_t -H5D__layout_set_latest_version(H5O_layout_t *layout, const H5S_t *space, - const H5D_dcpl_cache_t *dcpl_cache) +H5D__layout_set_version(H5F_t *f, H5O_layout_t *layout) { - herr_t ret_value = SUCCEED; /* Return value */ + unsigned version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_PACKAGE + FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ HDassert(layout); - HDassert(space); - HDassert(dcpl_cache); + HDassert(f); + + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(layout->version, H5O_layout_ver_bounds[H5F_LOW_BOUND(f)]); - /* Set encoding of layout to latest version */ - layout->version = H5O_LAYOUT_VERSION_LATEST; + /* Version bounds check */ + if(version > H5O_layout_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_DATASET, H5E_BADRANGE, FAIL, "layout version out of bounds") - /* Set the latest indexing type for the layout message */ - if(H5D__layout_set_latest_indexing(layout, space, dcpl_cache) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set latest indexing type") + /* Set the message version */ + layout->version = version; done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5D__layout_set_latest_version() */ +} /* end H5D__layout_set_version() */ /*------------------------------------------------------------------------- * Function: H5D__layout_set_latest_indexing * * Purpose: Set the latest indexing type for a layout message - * This is moved from H5D_layout_set_latest_version(). * * Return: Non-negative on success/Negative on failure * diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index 45f2d3a..78705c7 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -562,6 +562,9 @@ H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_BT2[1]; H5_DLLVAR const H5B2_class_t H5D_BT2[1]; H5_DLLVAR const H5B2_class_t H5D_BT2_FILT[1]; +/* Array of versions for Layout */ +H5_DLLVAR const unsigned H5O_layout_ver_bounds[H5F_LIBVER_NBOUNDS]; + /******************************/ /* Package Private Prototypes */ @@ -1477,7 +1477,8 @@ H5Fstart_swmr_write(hid_t file_id) if(file->shared->sblock->super_vers < HDF5_SUPERBLOCK_VERSION_3) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "file superblock version should be at least 3") - HDassert((file->shared->latest_flags | H5F_LATEST_LAYOUT_MSG) > 0); + + HDassert((file->shared->low_bound == H5F_LIBVER_V110) && (file->shared->high_bound == H5F_LIBVER_V110)); /* Should not be marked for SWMR writing mode already */ if(file->shared->sblock->status_flags & H5F_SUPER_SWMR_WRITE_ACCESS) @@ -1740,41 +1741,36 @@ done: /*------------------------------------------------------------------------- - * Function: H5Fset_latest_format + * Function: H5Fset_libver_bounds * - * Purpose: Enable switching the "latest format" flag while a file is open. + * Purpose: Set to a different low and high bounds while a file is open. + * This public routine is introduced in place of + * H5Fset_latest_format() starting release 1.10.2. + * See explanation for H5Fset_latest_format() in H5Fdeprec.c. * * Return: Non-negative on success/Negative on failure *------------------------------------------------------------------------- */ herr_t -H5Fset_latest_format(hid_t file_id, hbool_t latest_format) +H5Fset_libver_bounds(hid_t file_id, H5F_libver_t low, H5F_libver_t high) { H5F_t *f; /* File */ - unsigned latest_flags; /* Latest format flags for file */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE2("e", "ib", file_id, latest_format); + H5TRACE3("e", "iFvFv", file_id, low, high); /* Check args */ if(NULL == (f = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "not a file ID") - /* Check if the value is changing */ - latest_flags = H5F_USE_LATEST_FLAGS(f, H5F_LATEST_ALL_FLAGS); - if(latest_format != (H5F_LATEST_ALL_FLAGS == latest_flags)) { - /* Call the flush routine, for this file */ - if(H5F__flush(f, H5AC_ind_read_dxpl_id, H5AC_rawdata_dxpl_id, FALSE) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information") - - /* Toggle the 'latest format' flag */ - H5F_SET_LATEST_FLAGS(f, latest_format ? H5F_LATEST_ALL_FLAGS : 0); - } /* end if */ + /* Call private set_libver_bounds function */ + if(H5F_set_libver_bounds(f, low, high) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "cannot set low/high bounds") done: FUNC_LEAVE_API(ret_value) -} /* end H5Fset_latest_format() */ +} /* end H5Fset_libver_bounds() */ /*------------------------------------------------------------------------- diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c index f594d8e..08b1a3f 100644 --- a/src/H5FDmpio.c +++ b/src/H5FDmpio.c @@ -67,6 +67,12 @@ typedef struct H5FD_mpio_t { haddr_t eoa; /*end-of-address marker */ haddr_t last_eoa; /* Last known end-of-address marker */ haddr_t local_eof; /* Local end-of-file address for each process */ + herr_t do_pre_trunc_barrier; /* hack to allow us to skip */ + /* unnecessary barriers in */ + /* H5FD_mpio_trucate() without a VFD */ + /* API change. This should be removed */ + /* as soon as be make the necessary */ + /* VFD API change. */ } H5FD_mpio_t; /* Private Prototypes */ @@ -1039,6 +1045,9 @@ H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id, file->eof = H5FD_mpi_MPIOff_to_haddr(size); file->local_eof = file->eof; + /* Mark initial barriers in H5FD_mpio_truncate() as necessary */ + file->do_pre_trunc_barrier = TRUE; + /* Set return value */ ret_value=(H5FD_t*)file; @@ -1932,16 +1941,75 @@ done: /*------------------------------------------------------------------------- + * Function: H5FD_mark_pre_trunc_barrier_unecessary + * + * Purpose: Hack to allow us to avoid most unnecessary barriers + * prior in H5FD_mpio_truncate(). + * + * This function should be deleted when next we modify the + * VFD interface. This change should allow us to tell the + * truncate function to omit the initial barrier if no + * file I/O has occurred since the last barrier. + * + * Return: void + * + * + * Programmer: John Mainzer + * 12/14/17 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +void +H5FD_mpio_mark_pre_trunc_barrier_unecessary(H5FD_t *_file) +{ + H5FD_mpio_t *file = (H5FD_mpio_t*)_file; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(file); + HDassert(H5FD_MPIO == file->pub.driver_id); + + file->do_pre_trunc_barrier = FALSE; + + FUNC_LEAVE_NOAPI_VOID + +} /* end H5FD_mpio_mark_pre_trunc_barrier_unecessary() */ + + +/*------------------------------------------------------------------------- * Function: H5FD_mpio_truncate * * Purpose: Make certain the file's size matches it's allocated size * + * This is a little sticky in the mpio case, as it is not + * easy for us to track the current EOF by extracting it from + * write calls. + * + * Instead, we first check to see if the eoa has changed since + * the last call to this function. If it has, we call + * MPI_File_get_size() to determine the current EOF, and + * only call MPI_File_set_size() if this value disagrees + * with the current eoa. + * * Return: Success: Non-negative * Failure: Negative * * Programmer: Quincey Koziol * January 31, 2008 * + * Changes: Heavily reworked to avoid unnecessary MPI_File_set_size() + * calls. The hope is that these calls are superfluous in the + * typical case, allowing us to avoid truncates most of the + * time. + * + * The basic idea is to query the file system to get the + * current eof, and only truncate if the file systems + * conception of the eof disagrees with our eoa. + * + * JRM -- 10/27/17 + * *------------------------------------------------------------------------- */ static herr_t @@ -1959,35 +2027,77 @@ H5FD_mpio_truncate(H5FD_t *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_ HDassert(file); HDassert(H5FD_MPIO == file->pub.driver_id); - /* Extend the file to make sure it's large enough, then sync. - * Unfortunately, keeping track of EOF is an expensive operation, so - * we can't just check whether EOF<EOA like with other drivers. - * Therefore we'll just read the byte at EOA-1 and then write it back. */ - if(file->eoa > file->last_eoa) { - int mpi_code; /* mpi return code */ - MPI_Offset mpi_off; - - if(H5FD_mpi_haddr_to_MPIOff(file->eoa, &mpi_off) < 0) - HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "cannot convert from haddr_t to MPI_Offset") - - /* Extend the file's size */ - if(MPI_SUCCESS != (mpi_code = MPI_File_set_size(file->f, mpi_off))) - HMPI_GOTO_ERROR(FAIL, "MPI_File_set_size failed", mpi_code) - - /* Don't let any proc return until all have extended the file. - * (Prevents race condition where some processes go ahead and write - * more data to the file before all the processes have finished making - * it the shorter length, potentially truncating the file and dropping - * the new data written) + if ( !H5F_addr_eq(file->eoa, file->last_eoa) ) { + + int mpi_code; /* mpi return code */ + MPI_Offset size; + MPI_Offset needed_eof; + + /* In principle, it is possible for the size returned by the + * call to MPI_File_get_size() to depend on whether writes from + * all proceeses have completed at the time process 0 makes the + * call. + * + * In practice, most (all?) truncate calls will come after a barrier + * and with no interviening writes to the file (with the possible + * exception of sueprblock / superblock extension message updates). + * + * Unfortunately, the current VFD API doesn't let us pass in a + * flag indicating whether this particular call is unnecessary. + * To work around this, I have added the new function + * H5FD_mpio_mark_pre_trunc_barrier_unecessary() allow us to + * set a flag in H5FD_mpio_t indicating that we can skip the + * barrier. + * + * This is a pretty ugly hack, but until we revise the VFD API, + * it is about the best we can do. */ - if(MPI_SUCCESS != (mpi_code = MPI_Barrier(file->comm))) - HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code) + if (file->do_pre_trunc_barrier) { + if (MPI_SUCCESS!= (mpi_code=MPI_Barrier(file->comm))) + HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed(1)", mpi_code) + } + + /* Only processor p0 will get the filesize and broadcast it. */ + if (file->mpi_rank == 0) { + if (MPI_SUCCESS != (mpi_code=MPI_File_get_size(file->f, &size))) + HMPI_GOTO_ERROR(FAIL, "MPI_File_get_size failed", mpi_code) + } /* end if */ + + /* Broadcast file size */ + if(MPI_SUCCESS != (mpi_code = MPI_Bcast(&size, (int)sizeof(MPI_Offset), + MPI_BYTE, 0, file->comm))) + HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_code) + + if(H5FD_mpi_haddr_to_MPIOff(file->eoa, &needed_eof) < 0) + HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, \ + "cannot convert from haddr_t to MPI_Offset") + + if (size != needed_eof) /* eoa != eof. Set eof to eoa */ { + + /* Extend the file's size */ + if(MPI_SUCCESS != (mpi_code=MPI_File_set_size(file->f, needed_eof))) + HMPI_GOTO_ERROR(FAIL, "MPI_File_set_size failed", mpi_code) + + /* In general, we must wait until all processes have finished + * the truncate before any process can continue, since it is + * possible that a process would write at the end of the + * file, and this write would be discarded by the truncate. + * + * While this is an issue for a user initiated flush, it may + * not be an issue at file close. If so, we may be able to + * optimize out the following barrier in that case. + */ + if(MPI_SUCCESS != (mpi_code = MPI_Barrier(file->comm))) + HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code) + } /* Update the 'last' eoa value */ file->last_eoa = file->eoa; } /* end if */ done: + file->do_pre_trunc_barrier = TRUE; + #ifdef H5FDmpio_DEBUG if(H5FD_mpio_Debug[(int)'t']) HDfprintf(stdout, "Leaving %s\n", FUNC); diff --git a/src/H5FDprivate.h b/src/H5FDprivate.h index e758951..f7cd931 100644 --- a/src/H5FDprivate.h +++ b/src/H5FDprivate.h @@ -203,6 +203,7 @@ H5_DLL int H5FD_mpi_get_rank(const H5FD_t *file); H5_DLL int H5FD_mpi_get_size(const H5FD_t *file); H5_DLL MPI_Comm H5FD_mpi_get_comm(const H5FD_t *_file); H5_DLL herr_t H5FD_get_mpi_info(H5FD_t *file, void** file_info); +H5_DLL void H5FD_mpio_mark_pre_trunc_barrier_unecessary(H5FD_t *_file); #endif /* H5_HAVE_PARALLEL */ #endif /* !_H5FDprivate_H */ diff --git a/src/H5Fdeprec.c b/src/H5Fdeprec.c index 03f5df8..a9ffa43 100644 --- a/src/H5Fdeprec.c +++ b/src/H5Fdeprec.c @@ -143,5 +143,67 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Fget_info1() */ + +/*------------------------------------------------------------------------- + * Function: H5Fset_latest_format + * + * Purpose: Enable switching between latest or non-latest format while + * a file is open. + * This is deprecated starting release 1.10.2 and is modified + * to call the private H5F_set_libver_bounds() to set the + * bounds. + * + * Before release 1.10.2, the library supports only two + * combinations of low/high bounds: + * (earliest, latest) + * (latest, latest) + * Thus, this public routine does the job in switching + * between the two combinations listed above. + * + * Starting release 1.10.2, we add v18 to the enumerated + * define H5F_libver_t and the library supports five combinations + * as below: + * (earliest, v18) + * (earliest, v10) + * (v18, v18) + * (v18, v10) + * (v10, v10) + * So we introduce the new public routine H5Fset_libver_bounds() + * in place of H5Fset_latest_format(). + * See also RFC: Setting Bounds for Object Creation in HDF5 1.10.0. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Vailin Choi; December 2017 + * + *------------------------------------------------------------------------- + */ +herr_t +H5Fset_latest_format(hid_t file_id, hbool_t latest_format) +{ + H5F_t *f; /* File */ + H5F_libver_t low = H5F_LIBVER_LATEST; /* Low bound */ + H5F_libver_t high = H5F_LIBVER_LATEST; /* High bound */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE2("e", "ib", file_id, latest_format); + + /* Check args */ + if(NULL == (f = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) + HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "not a file ID") + + /* 'low' and 'high' are both initialized to LATEST. + If latest format is not expected, set 'low' to EARLIEST */ + if(!latest_format) + low = H5F_LIBVER_EARLIEST; + + /* Call private set_libver_bounds function to set the bounds */ + if(H5F_set_libver_bounds(f, low, high) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "cannot set low/high bounds") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Fset_latest_format() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5Ffake.c b/src/H5Ffake.c index 86c4a3d..d199cf0 100644 --- a/src/H5Ffake.c +++ b/src/H5Ffake.c @@ -15,10 +15,11 @@ /* Packages needed by this file... */ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Fpkg.h" /* File access */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Pprivate.h" /* Property lists */ /* PRIVATE PROTOTYPES */ @@ -45,7 +46,6 @@ H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id) { H5F_t *f = NULL; /* Pointer to fake file struct */ H5P_genplist_t *plist; /* Property list */ - hbool_t latest; H5F_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) @@ -62,15 +62,15 @@ H5F_fake_alloc(uint8_t sizeof_size, hid_t fapl_id) else f->shared->sizeof_size = sizeof_size; - /* Activate latest version support according to the setting in fapl_id */ + /* Set low/high bounds according to the setting in fapl_id */ /* See H5F_new() in H5Fint.c */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(fapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not file access property list") - if(H5P_get(plist, H5F_ACS_LATEST_FORMAT_NAME, &latest) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'latest format' flag") - if(latest) - f->shared->latest_flags |= H5F_LATEST_ALL_FLAGS; + if(H5P_get(plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &(f->shared->low_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'low' bound for library format versions") + if(H5P_get(plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &(f->shared->high_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'high' bound for library format versions") /* Set return value */ ret_value = f; diff --git a/src/H5Fint.c b/src/H5Fint.c index 4ef8e85..cc5931a 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -161,10 +161,10 @@ H5F_get_access_plist(H5F_t *f, hbool_t app_ref) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't sieve buffer size") if(H5P_set(new_plist, H5F_ACS_SDATA_BLOCK_SIZE_NAME, &(f->shared->sdata_aggr.alloc_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'small data' cache size") - if(f->shared->latest_flags > 0) - latest_format = TRUE; - if(H5P_set(new_plist, H5F_ACS_LATEST_FORMAT_NAME, &latest_format) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'latest format' flag") + if(H5P_set(new_plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &f->shared->low_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'low' bound for library format versions") + if(H5P_set(new_plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &f->shared->high_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'high' bound for library format versions") if(H5P_set(new_plist, H5F_ACS_METADATA_READ_ATTEMPTS_NAME, &(f->shared->read_attempts)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'read attempts ' flag") if(H5P_set(new_plist, H5F_ACS_OBJECT_FLUSH_CB_NAME, &(f->shared->object_flush)) < 0) @@ -902,13 +902,10 @@ H5F_new(H5F_file_t *shared, unsigned flags, hid_t fcpl_id, hid_t fapl_id, H5FD_t HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get garbage collect reference") if(H5P_get(plist, H5F_ACS_SIEVE_BUF_SIZE_NAME, &(f->shared->sieve_buf_size)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get sieve buffer size") - if(H5P_get(plist, H5F_ACS_LATEST_FORMAT_NAME, &latest_format) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'latest format' flag") - /* For latest format or SWMR_WRITE, activate all latest version support */ - if(latest_format) - f->shared->latest_flags |= H5F_LATEST_ALL_FLAGS; - else if(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE) - f->shared->latest_flags |= H5F_LATEST_LAYOUT_MSG; + if(H5P_get(plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &(f->shared->low_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'low' bound for library format versions") + if(H5P_get(plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &(f->shared->high_bound)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'high' bound for library format versions") if(H5P_get(plist, H5F_ACS_USE_MDC_LOGGING_NAME, &(f->shared->use_mdc_logging)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get 'use mdc logging' flag") if(H5P_get(plist, H5F_ACS_START_MDC_LOG_ON_ACCESS_NAME, &(f->shared->start_mdc_log_on_access)) < 0) @@ -1791,6 +1788,15 @@ H5F__flush_phase2(H5F_t *f, hid_t meta_dxpl_id, hid_t raw_dxpl_id, hbool_t closi HDONE_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush metadata cache") /* Truncate the file to the current allocated size */ +#ifdef H5_HAVE_PARALLEL + if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) { + /* Since we just returned from a call to H5AC_flush(), we just + * passed through a barrier. Hence we can skip the barrier on + * entry to the mpio file driver call below. + */ + H5FD_mpio_mark_pre_trunc_barrier_unecessary(f->shared->lf); + } +#endif /* H5_HAVE_PARALLEL */ if(H5FD_truncate(f->shared->lf, meta_dxpl_id, closing) < 0) /* Push error, but keep going*/ HDONE_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "low level truncate failed") @@ -2571,7 +2577,39 @@ H5F_set_store_msg_crt_idx(H5F_t *f, hbool_t flag) FUNC_LEAVE_NOAPI(SUCCEED) } /* H5F_set_store_msg_crt_idx() */ +/*------------------------------------------------------------------------- + * Function: H5F_set_libver_bounds() + * + * Purpose: Set the file's low and high bound to the input parameters + * 'low' and 'high' respectively. + * This is done only if the existing setting is different + * from the inputs. + * + * Return: SUCCEED on success, and FAIL on failure. + * + * Programmer: Vailin Choi; December 2017 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_set_libver_bounds(H5F_t * f, H5F_libver_t low, H5F_libver_t high) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Sanity checks */ + HDassert(f); + HDassert(f->shared); + + /* Set the bounds only if the existing setting is different from the inputs */ + if(f->shared->low_bound != low || f->shared->high_bound != high) { + f->shared->low_bound = low; + f->shared->high_bound = high; + } + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5F_set_libver_bounds() */ + /*------------------------------------------------------------------------- * Function: H5F_get_file_image * @@ -2908,30 +2946,3 @@ H5F_set_coll_md_read(H5F_t *f, H5P_coll_md_read_flag_t cmr) FUNC_LEAVE_NOAPI_VOID } /* H5F_set_coll_md_read() */ #endif /* H5_HAVE_PARALLEL */ - - -/*------------------------------------------------------------------------- - * Function: H5F_set_latest_flags - * - * Purpose: Set the latest_flags field with a new value. - * - * Return: Success: SUCCEED - * Failure: FAIL - *------------------------------------------------------------------------- - */ -herr_t -H5F_set_latest_flags(H5F_t *f, unsigned flags) -{ - /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ - FUNC_ENTER_NOAPI_NOINIT_NOERR - - /* Sanity check */ - HDassert(f); - HDassert(f->shared); - HDassert(0 == ((flags) & ~H5F_LATEST_ALL_FLAGS)); - - f->shared->latest_flags = flags; - - FUNC_LEAVE_NOAPI(SUCCEED) -} /* H5F_set_latest_flags() */ - diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index b50b4e5..c9aba56 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -300,7 +300,8 @@ struct H5F_file_t { hsize_t threshold; /* Threshold for alignment */ hsize_t alignment; /* Alignment */ unsigned gc_ref; /* Garbage-collect references? */ - unsigned latest_flags; /* The latest version support */ + H5F_libver_t low_bound; /* The 'low' bound of library format versions */ + H5F_libver_t high_bound; /* The 'high' bound of library format versions */ hbool_t store_msg_crt_idx; /* Store creation index for object header messages? */ unsigned ncwfs; /* Num entries on cwfs list */ struct H5HG_heap_t **cwfs; /* Global heap cache */ diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index 2410a83..dadbbac 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -275,6 +275,8 @@ typedef struct H5F_t H5F_t; /* If the module using this macro is allowed access to the private variables, access them directly */ #ifdef H5F_MODULE +#define H5F_LOW_BOUND(F) ((F)->shared->low_bound) +#define H5F_HIGH_BOUND(F) ((F)->shared->high_bound) #define H5F_INTENT(F) ((F)->shared->flags) #define H5F_OPEN_NAME(F) ((F)->open_name) #define H5F_ACTUAL_NAME(F) ((F)->actual_name) @@ -311,15 +313,12 @@ typedef struct H5F_t H5F_t; #define H5F_RDCC_W0(F) ((F)->shared->rdcc_w0) #define H5F_SIEVE_BUF_SIZE(F) ((F)->shared->sieve_buf_size) #define H5F_GC_REF(F) ((F)->shared->gc_ref) -#define H5F_USE_LATEST_FLAGS(F,FL) ((F)->shared->latest_flags & (FL)) -#define H5F_GET_LATEST_FLAGS(F) ((F)->shared->latest_flags) #define H5F_STORE_MSG_CRT_IDX(F) ((F)->shared->store_msg_crt_idx) #define H5F_SET_STORE_MSG_CRT_IDX(F, FL) ((F)->shared->store_msg_crt_idx = (FL)) #define H5F_GRP_BTREE_SHARED(F) ((F)->shared->grp_btree_shared) #define H5F_SET_GRP_BTREE_SHARED(F, RC) (((F)->shared->grp_btree_shared = (RC)) ? SUCCEED : FAIL) #define H5F_USE_TMP_SPACE(F) ((F)->shared->fs.use_tmp_space) #define H5F_IS_TMP_ADDR(F, ADDR) (H5F_addr_le((F)->shared->fs.tmp_addr, (ADDR))) -#define H5F_SET_LATEST_FLAGS(F, FL) ((F)->shared->latest_flags = (FL)) #ifdef H5_HAVE_PARALLEL #define H5F_COLL_MD_READ(F) ((F)->coll_md_read) #endif /* H5_HAVE_PARALLEL */ @@ -333,6 +332,8 @@ typedef struct H5F_t H5F_t; #define H5F_FIRST_ALLOC_DEALLOC(F) ((F)->shared->first_alloc_dealloc) #define H5F_EOA_PRE_FSM_FSALLOC(F) ((F)->shared->eoa_pre_fsm_fsalloc) #else /* H5F_MODULE */ +#define H5F_LOW_BOUND(F) (H5F_get_low_bound(F)) +#define H5F_HIGH_BOUND(F) (H5F_get_high_bound(F)) #define H5F_INTENT(F) (H5F_get_intent(F)) #define H5F_OPEN_NAME(F) (H5F_get_open_name(F)) #define H5F_ACTUAL_NAME(F) (H5F_get_actual_name(F)) @@ -369,15 +370,12 @@ typedef struct H5F_t H5F_t; #define H5F_RDCC_W0(F) (H5F_rdcc_w0(F)) #define H5F_SIEVE_BUF_SIZE(F) (H5F_sieve_buf_size(F)) #define H5F_GC_REF(F) (H5F_gc_ref(F)) -#define H5F_USE_LATEST_FLAGS(F,FL) (H5F_use_latest_flags(F,FL)) -#define H5F_GET_LATEST_FLAGS(F) (H5F_get_latest_flags(F)) #define H5F_STORE_MSG_CRT_IDX(F) (H5F_store_msg_crt_idx(F)) #define H5F_SET_STORE_MSG_CRT_IDX(F, FL) (H5F_set_store_msg_crt_idx((F), (FL))) #define H5F_GRP_BTREE_SHARED(F) (H5F_grp_btree_shared(F)) #define H5F_SET_GRP_BTREE_SHARED(F, RC) (H5F_set_grp_btree_shared((F), (RC))) #define H5F_USE_TMP_SPACE(F) (H5F_use_tmp_space(F)) #define H5F_IS_TMP_ADDR(F, ADDR) (H5F_is_tmp_addr((F), (ADDR))) -#define H5F_SET_LATEST_FLAGS(F, FL) (H5F_set_latest_flags((F), (FL))) #ifdef H5_HAVE_PARALLEL #define H5F_COLL_MD_READ(F) (H5F_coll_md_read(F)) #endif /* H5_HAVE_PARALLEL */ @@ -486,7 +484,8 @@ typedef struct H5F_t H5F_t; #define H5F_ACS_FAMILY_NEWSIZE_NAME "family_newsize" /* New member size of family driver. (private property only used by h5repart) */ #define H5F_ACS_FAMILY_TO_SEC2_NAME "family_to_sec2" /* Whether to convert family to sec2 driver. (private property only used by h5repart) */ #define H5F_ACS_MULTI_TYPE_NAME "multi_type" /* Data type in multi file driver */ -#define H5F_ACS_LATEST_FORMAT_NAME "latest_format" /* 'Use latest format version' flag */ +#define H5F_ACS_LIBVER_LOW_BOUND_NAME "libver_low_bound" /* 'low' bound of library format versions */ +#define H5F_ACS_LIBVER_HIGH_BOUND_NAME "libver_high_bound" /* 'high' bound of library format versions */ #define H5F_ACS_WANT_POSIX_FD_NAME "want_posix_fd" /* Internal: query the file descriptor from the core VFD, instead of the memory address */ #define H5F_ACS_METADATA_READ_ATTEMPTS_NAME "metadata_read_attempts" /* # of metadata read attempts */ #define H5F_ACS_OBJECT_FLUSH_CB_NAME "object_flush_cb" /* Object flush callback */ @@ -631,24 +630,6 @@ typedef struct H5F_t H5F_t; #define H5SM_TABLE_MAGIC "SMTB" /* Shared Message Table */ #define H5SM_LIST_MAGIC "SMLI" /* Shared Message List */ - -/* Latest format will activate the following latest version support */ -/* "latest_flags" in H5F_file_t */ -#define H5F_LATEST_DATATYPE 0x0001 -#define H5F_LATEST_DATASPACE 0x0002 -#define H5F_LATEST_ATTRIBUTE 0x0004 -#define H5F_LATEST_FILL_MSG 0x0008 -#define H5F_LATEST_PLINE_MSG 0x0010 -#define H5F_LATEST_LAYOUT_MSG 0x0020 -#define H5F_LATEST_NO_MOD_TIME_MSG 0x0040 -#define H5F_LATEST_STYLE_GROUP 0x0080 -#define H5F_LATEST_OBJ_HEADER 0x0100 -#define H5F_LATEST_SUPERBLOCK 0x0200 -#define H5F_LATEST_DATASPACE_SELECTION 0x0400 -#define H5F_LATEST_ALL_FLAGS (H5F_LATEST_DATATYPE | H5F_LATEST_DATASPACE | H5F_LATEST_ATTRIBUTE | H5F_LATEST_FILL_MSG | H5F_LATEST_PLINE_MSG | H5F_LATEST_LAYOUT_MSG | H5F_LATEST_NO_MOD_TIME_MSG | H5F_LATEST_STYLE_GROUP | H5F_LATEST_OBJ_HEADER | H5F_LATEST_SUPERBLOCK | H5F_LATEST_DATASPACE_SELECTION) - -#define H5F_LATEST_DSET_MSG_FLAGS (H5F_LATEST_FILL_MSG | H5F_LATEST_PLINE_MSG | H5F_LATEST_LAYOUT_MSG) - /****************************/ /* Library Private Typedefs */ /****************************/ @@ -739,7 +720,9 @@ H5_DLL H5F_t *H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id, hid_t dxpl_id); H5_DLL herr_t H5F_try_close(H5F_t *f, hbool_t *was_closed/*out*/); -/* Functions than retrieve values from the file struct */ +/* Functions that retrieve values from the file struct */ +H5_DLL H5F_libver_t H5F_get_low_bound(const H5F_t *f); +H5_DLL H5F_libver_t H5F_get_high_bound(const H5F_t *f); H5_DLL unsigned H5F_get_intent(const H5F_t *f); H5_DLL char *H5F_get_open_name(const H5F_t *f); H5_DLL char *H5F_get_actual_name(const H5F_t *f); @@ -786,11 +769,11 @@ H5_DLL unsigned H5F_gc_ref(const H5F_t *f); H5_DLL unsigned H5F_use_latest_flags(const H5F_t *f, unsigned fl); H5_DLL hbool_t H5F_store_msg_crt_idx(const H5F_t *f); H5_DLL herr_t H5F_set_store_msg_crt_idx(H5F_t *f, hbool_t flag); +H5_DLL herr_t H5F_set_libver_bounds(H5F_t * f, H5F_libver_t low, H5F_libver_t high); H5_DLL struct H5UC_t *H5F_grp_btree_shared(const H5F_t *f); H5_DLL herr_t H5F_set_grp_btree_shared(H5F_t *f, struct H5UC_t *rc); H5_DLL hbool_t H5F_use_tmp_space(const H5F_t *f); H5_DLL hbool_t H5F_is_tmp_addr(const H5F_t *f, haddr_t addr); -H5_DLL herr_t H5F_set_latest_flags(H5F_t *f, unsigned flags); H5_DLL hsize_t H5F_get_alignment(const H5F_t *f); H5_DLL hsize_t H5F_get_threshold(const H5F_t *f); #ifdef H5_HAVE_PARALLEL diff --git a/src/H5Fpublic.h b/src/H5Fpublic.h index 1594cb2..d333fa7 100644 --- a/src/H5Fpublic.h +++ b/src/H5Fpublic.h @@ -173,12 +173,17 @@ typedef struct H5F_sect_info_t { hsize_t size; /* Size of free space section */ } H5F_sect_info_t; -/* Library's file format versions */ +/* Library's format versions */ typedef enum H5F_libver_t { - H5F_LIBVER_EARLIEST, /* Use the earliest possible format for storing objects */ - H5F_LIBVER_LATEST /* Use the latest possible format available for storing objects*/ + H5F_LIBVER_ERROR = -1, + H5F_LIBVER_EARLIEST = 0, /* Use the earliest possible format for storing objects */ + H5F_LIBVER_V18 = 1, /* Use the latest v18 format for storing objects */ + H5F_LIBVER_V110 = 2, /* Use the latest v10 format for storing objects */ + H5F_LIBVER_NBOUNDS } H5F_libver_t; +#define H5F_LIBVER_LATEST H5F_LIBVER_V110 + /* File space handling strategy */ typedef enum H5F_fspace_strategy_t { H5F_FSPACE_STRATEGY_FSM_AGGR = 0, /* Mechanisms: free-space managers, aggregators, and virtual file drivers */ @@ -255,7 +260,7 @@ H5_DLL herr_t H5Fstart_swmr_write(hid_t file_id); H5_DLL ssize_t H5Fget_free_sections(hid_t file_id, H5F_mem_t type, size_t nsects, H5F_sect_info_t *sect_info/*out*/); H5_DLL herr_t H5Fclear_elink_file_cache(hid_t file_id); -H5_DLL herr_t H5Fset_latest_format(hid_t file_id, hbool_t latest_format); +H5_DLL herr_t H5Fset_libver_bounds(hid_t file_id, H5F_libver_t low, H5F_libver_t high); H5_DLL herr_t H5Fstart_mdc_logging(hid_t file_id); H5_DLL herr_t H5Fstop_mdc_logging(hid_t file_id); H5_DLL herr_t H5Fget_mdc_logging_status(hid_t file_id, @@ -295,6 +300,7 @@ typedef struct H5F_info1_t { /* Function prototypes */ H5_DLL herr_t H5Fget_info1(hid_t obj_id, H5F_info1_t *finfo); +H5_DLL herr_t H5Fset_latest_format(hid_t file_id, hbool_t latest_format); #endif /* H5_NO_DEPRECATED_SYMBOLS */ diff --git a/src/H5Fquery.c b/src/H5Fquery.c index 235a26d..f7e222e 100644 --- a/src/H5Fquery.c +++ b/src/H5Fquery.c @@ -97,6 +97,56 @@ H5F_get_intent(const H5F_t *f) /*------------------------------------------------------------------------- + * Function: H5F_get_low_bound + * + * Purpose: Quick and dirty routine to retrieve the file's low_bound. + * (Mainly added to stop non-file routines from poking about in the + * H5F_t data structure) + * + * Return: low_bound on success/abort on failure (shouldn't fail) + * + * Programmer: Vailin Choi; June 2016 + * + *------------------------------------------------------------------------- + */ +H5F_libver_t +H5F_get_low_bound(const H5F_t *f) +{ + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(f); + + FUNC_LEAVE_NOAPI(f->shared->low_bound) +} /* end H5F_get_low_bound() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_get_high_bound + * + * Purpose: Quick and dirty routine to retrieve the file's high_bound. + * (Mainly added to stop non-file routines from poking about in the + * H5F_t data structure) + * + * Return: high_bound on success/abort on failure (shouldn't fail) + * + * Programmer: Vailin Choi; June 2016 + * + *------------------------------------------------------------------------- + */ +H5F_libver_t +H5F_get_high_bound(const H5F_t *f) +{ + /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + HDassert(f); + + FUNC_LEAVE_NOAPI(f->shared->high_bound) +} /* end H5F_get_high_bound() */ + + +/*------------------------------------------------------------------------- * Function: H5F_get_open_name * * Purpose: Retrieve the name used to open a file. @@ -667,9 +717,13 @@ H5F_sieve_buf_size(const H5F_t *f) * references flag" now that the generic properties are being used * to store the values. * - * Return: Success: The "garbage collect references flag" - * is returned. - * Failure: (should not happen) + * Return: Success: The "garbage collect references flag" is returned. + * Failure: (should not happen) + * + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * Jul 8 2005 + * *------------------------------------------------------------------------- */ unsigned @@ -686,63 +740,14 @@ H5F_gc_ref(const H5F_t *f) /*------------------------------------------------------------------------- - * Function: H5F_use_latest_flags + * Function: H5F_get_fc_degree * - * Purpose: Retrieve the requested 'latest version support' for the file. + * Purpose: Retrieve the 'file close degree' for the file. * - * Return: Success: Non-negative, the requested 'version support' + * Return: Success: Non-negative, the 'file close degree' * Failure: (can't happen) *------------------------------------------------------------------------- */ -unsigned -H5F_use_latest_flags(const H5F_t *f, unsigned fl) -{ - /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ - FUNC_ENTER_NOAPI_NOINIT_NOERR - - HDassert(f); - HDassert(f->shared); - - FUNC_LEAVE_NOAPI(f->shared->latest_flags & (fl)) -} /* end H5F_use_latest_flags() */ - - -/*------------------------------------------------------------------------- - * Function: H5F_get_latest_flags - * - * Purpose: Retrieve the 'latest version support' setting for the file. - * - * Return: Success: Non-negative - * Failure: (can't happen) - * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Mar 5 2007 - * - *------------------------------------------------------------------------- - */ -unsigned -H5F_get_latest_flags(const H5F_t *f) -{ - /* Use FUNC_ENTER_NOAPI_NOINIT_NOERR here to avoid performance issues */ - FUNC_ENTER_NOAPI_NOINIT_NOERR - - HDassert(f); - HDassert(f->shared); - - FUNC_LEAVE_NOAPI(f->shared->latest_flags) -} /* end H5F_get_latest_flags() */ - - -/*------------------------------------------------------------------------- - * Function: H5F_get_fc_degree - * - * Purpose: Retrieve the 'file close degree' for the file. - * - * Return: Success: Non-negative, the 'file close degree' - * Failure: (can't happen) - *------------------------------------------------------------------------- - */ H5F_close_degree_t H5F_get_fc_degree(const H5F_t *f) { diff --git a/src/H5Fsuper.c b/src/H5Fsuper.c index 0c6f9cd..4250ff0 100644 --- a/src/H5Fsuper.c +++ b/src/H5Fsuper.c @@ -59,7 +59,6 @@ static herr_t H5F__update_super_ext_driver_msg(H5F_t *f, hid_t dxpl_id); /* Package Variables */ /*********************/ - /*****************************/ /* Library Private Variables */ /*****************************/ @@ -72,6 +71,12 @@ H5FL_DEFINE(H5F_super_t); /* Local Variables */ /*******************/ +/* Format version bounds for superblock */ +static const unsigned HDF5_superblock_ver_bounds[] = { + HDF5_SUPERBLOCK_VERSION_DEF, /* H5F_LIBVER_EARLIEST */ + HDF5_SUPERBLOCK_VERSION_2, /* H5F_LIBVER_V18 */ + HDF5_SUPERBLOCK_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /*------------------------------------------------------------------------- @@ -452,13 +457,46 @@ H5F__super_read(H5F_t *f, hid_t meta_dxpl_id, hid_t raw_dxpl_id, hbool_t initial if(NULL == (sblock = (H5F_super_t *)H5AC_protect(f, meta_dxpl_id, H5AC_SUPERBLOCK, (haddr_t)0, &udata, rw_flags))) HGOTO_ERROR(H5E_FILE, H5E_CANTPROTECT, FAIL, "unable to load superblock") - if(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE) - if(sblock->super_vers < HDF5_SUPERBLOCK_VERSION_3) - HGOTO_ERROR(H5E_FILE, H5E_CANTPROTECT, FAIL, "invalid superblock version for SWMR_WRITE") + /* + * When opening a file with SWMR-write access, the library will first + * check to ensure that superblock version 3 is used. Otherwise fail + * file open. + * + * Then the library will upgrade the file's low_bound depending on + * superblock version as follows: + * --version 0 or 1: no change to low_bound + * --version 2: upgrade low_bound to at least V18 + * --version 3: upgrade low_bound to at least V110 + * + * Upgrading low_bound will give the best format versions available for + * that superblock version. Due to the possible upgrade, the fapl returned + * from H5Fget_access_plist() might indicate a low_bound higher than what + * the user originally set. + * + * After upgrading low_bound, the library will check to ensure that the + * superblock version does not exceed the version allowed by high_bound. + * Otherise fail file open. + * + * For details, please see RFC:Setting Bounds for Object Creation in HDF5 1.10.0. + */ + + /* Check to ensure that superblock version 3 is used for SWMR-write access */ + if(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE) { + if(sblock->super_vers < HDF5_SUPERBLOCK_VERSION_3) + HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "superblock version for SWMR is less than 3") + } - /* Enable all latest version support when file has v3 superblock */ + /* Upgrade low_bound to at least V18 when encountering version 2 superblock */ + if(sblock->super_vers == HDF5_SUPERBLOCK_VERSION_2) + f->shared->low_bound = MAX(H5F_LIBVER_V18, f->shared->low_bound); + + /* Upgrade low_bound to at least V110 when encountering version 3 superblock */ if(sblock->super_vers >= HDF5_SUPERBLOCK_VERSION_3) - f->shared->latest_flags |= H5F_LATEST_ALL_FLAGS; + f->shared->low_bound = MAX(H5F_LIBVER_V110, f->shared->low_bound); + + /* Version bounds check */ + if(sblock->super_vers > HDF5_superblock_ver_bounds[f->shared->high_bound]) + HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "superblock version exceeds high bound") /* Pin the superblock in the cache */ if(H5AC_pin_protected_entry(sblock) < 0) @@ -1018,14 +1056,42 @@ H5F__super_init(H5F_t *f, hid_t dxpl_id) f->shared->fs_page_size == H5F_FILE_SPACE_PAGE_SIZE_DEF)) non_default_fs_settings = TRUE; - /* Bump superblock version if latest superblock version support is enabled */ - if(H5F_USE_LATEST_FLAGS(f, H5F_LATEST_SUPERBLOCK)) - super_vers = HDF5_SUPERBLOCK_VERSION_LATEST; - /* Bump superblock version to use version 3 superblock for SWMR writing */ - else if((H5F_INTENT(f) & H5F_ACC_SWMR_WRITE)) + /* + * When creating a file with write access, the library will: + * -- set superblock version to 0, 1 or 2 based on feature enabled + * -- no change to low_bound + * When creating a file with SWMR-write access, the library will: + * (See explanation (#) below.) + * -- set superblock version to 3 + * -- upgrade low_bound to at least V110 + * + * Then the library will finalize superblock version to that allowed by + * low_bound if that is higher. + * Lastly, the library will check to ensure the superblock version does not + * exceed the version allowed by high_bound. Otherwise fail file open. + * + * For details, please see RFC:Setting Bounds for Object Creation in HDF5 1.10.0. + * + * (#) + * Version 3 superblock is introduced in 1.10 for SWMR due to the problem of + * the status_flags field in the superblock. The problem is discussed in + * jira issue SWMR-79 and also in the RFC: File Format Changes in HDF5 1.10.0. + * The file's low_bound is upgraded for SWMR so that the library will + * use the best format versions available in 1.10. + * Due to the possible upgrade, the fapl returned from H5Fget_access_plist() + * might indicate a low_bound higher than what the user originally set. + */ + + /* + * Creating a file with SWMR-write access will + * upgrade superblock version and low_bound + */ + if(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE) { super_vers = HDF5_SUPERBLOCK_VERSION_3; + f->shared->low_bound = MAX(H5F_LIBVER_V110, f->shared->low_bound); + /* Bump superblock version to create superblock extension for SOHM info */ - else if(f->shared->sohm_nindexes > 0) + } else if(f->shared->sohm_nindexes > 0) super_vers = HDF5_SUPERBLOCK_VERSION_2; /* * Bump superblock version to create superblock extension for: @@ -1043,6 +1109,13 @@ H5F__super_init(H5F_t *f, hid_t dxpl_id) else if(sblock->btree_k[H5B_CHUNK_ID] != HDF5_BTREE_CHUNK_IK_DEF) super_vers = HDF5_SUPERBLOCK_VERSION_1; + /* Finalize superblock version to that allowed by the file's low bound if higher */ + super_vers = MAX(super_vers, HDF5_superblock_ver_bounds[f->shared->low_bound]); + + /* Version bounds check */ + if(super_vers > HDF5_superblock_ver_bounds[f->shared->high_bound]) + HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "superblock version out of bounds") + /* If a newer superblock version is required, set it here */ if(super_vers != HDF5_SUPERBLOCK_VERSION_DEF) { H5P_genplist_t *c_plist; /* Property list */ @@ -1067,8 +1140,8 @@ H5F__super_init(H5F_t *f, hid_t dxpl_id) /* Sanity check the userblock size vs. the file's allocation alignment */ if(userblock_size > 0) { - /* Set up the alignment to use for page or aggr fs */ - hsize_t alignment = H5F_PAGED_AGGR(f) ? f->shared->fs_page_size : f->shared->alignment; + /* Set up the alignment to use for page or aggr fs */ + hsize_t alignment = H5F_PAGED_AGGR(f) ? f->shared->fs_page_size : f->shared->alignment; if(userblock_size < alignment) HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, FAIL, "userblock size must be > file object alignment") diff --git a/src/H5Gbtree2.c b/src/H5Gbtree2.c index 71d15e5..4702c46 100644 --- a/src/H5Gbtree2.c +++ b/src/H5Gbtree2.c @@ -155,7 +155,7 @@ const H5B2_class_t H5G_BT2_CORDER[1]={{ /* B-tree class information */ *------------------------------------------------------------------------- */ static herr_t -H5G_dense_fh_name_cmp(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_fh_name_cmp(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_cmp_t *udata = (H5G_fh_ud_cmp_t *)_udata; /* User data for 'op' callback */ H5O_link_t *lnk; /* Pointer to link created from heap object */ @@ -164,7 +164,7 @@ H5G_dense_fh_name_cmp(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_uda FUNC_ENTER_NOAPI_NOINIT /* Decode link information */ - if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link") /* Compare the string values */ diff --git a/src/H5Gdense.c b/src/H5Gdense.c index 4ae6800..de11541 100644 --- a/src/H5Gdense.c +++ b/src/H5Gdense.c @@ -599,7 +599,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_dense_lookup_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_lookup_by_idx_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_lbi_t *udata = (H5G_fh_ud_lbi_t *)_udata; /* User data for fractal heap 'op' callback */ H5O_link_t *tmp_lnk = NULL; /* Temporary pointer to link */ @@ -608,7 +608,7 @@ H5G_dense_lookup_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, vo FUNC_ENTER_NOAPI_NOINIT /* Decode link information & keep a copy */ - if(NULL == (tmp_lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (tmp_lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link") /* Copy link information */ @@ -889,7 +889,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_dense_iterate_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_iterate_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_it_t *udata = (H5G_fh_ud_it_t *)_udata; /* User data for fractal heap 'op' callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -903,7 +903,7 @@ H5G_dense_iterate_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_u * HDF5 routine, it could attempt to re-protect that direct block for the * heap, causing the HDF5 routine called to fail - QAK) */ - if(NULL == (udata->lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (udata->lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link") done: @@ -1101,7 +1101,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_dense_get_name_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_get_name_by_idx_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_gnbi_t *udata = (H5G_fh_ud_gnbi_t *)_udata; /* User data for fractal heap 'op' callback */ H5O_link_t *lnk; /* Pointer to link created from heap object */ @@ -1110,7 +1110,7 @@ H5G_dense_get_name_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, FUNC_ENTER_NOAPI_NOINIT /* Decode link information */ - if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link") /* Get the length of the name */ @@ -1308,7 +1308,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_dense_remove_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_remove_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_rm_t *udata = (H5G_fh_ud_rm_t *)_udata; /* User data for fractal heap 'op' callback */ H5O_link_t *lnk = NULL; /* Pointer to link created from heap object */ @@ -1318,7 +1318,7 @@ H5G_dense_remove_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_ud FUNC_ENTER_NOAPI_NOINIT /* Decode link information */ - if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link") /* Check for removing the link from the creation order index */ @@ -1485,7 +1485,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5G_dense_remove_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, void *_udata) +H5G_dense_remove_by_idx_fh_cb(const void *obj, size_t obj_len, void *_udata) { H5G_fh_ud_rmbi_t *udata = (H5G_fh_ud_rmbi_t *)_udata; /* User data for fractal heap 'op' callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1493,7 +1493,7 @@ H5G_dense_remove_by_idx_fh_cb(const void *obj, size_t H5_ATTR_UNUSED obj_len, vo FUNC_ENTER_NOAPI_NOINIT /* Decode link information */ - if(NULL == (udata->lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, (const unsigned char *)obj))) + if(NULL == (udata->lnk = (H5O_link_t *)H5O_msg_decode(udata->f, udata->dxpl_id, NULL, H5O_LINK_ID, obj_len, (const unsigned char *)obj))) HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, H5_ITER_ERROR, "can't decode link") /* Can't operate on link here because the fractal heap block is locked */ diff --git a/src/H5Gobj.c b/src/H5Gobj.c index d2dc83b..5f9bdc8 100644 --- a/src/H5Gobj.c +++ b/src/H5Gobj.c @@ -185,7 +185,7 @@ H5G__obj_create_real(H5F_t *f, hid_t dxpl_id, const H5O_ginfo_t *ginfo, H5G_obj_create_t *gcrt_info, H5O_loc_t *oloc/*out*/) { size_t hdr_size; /* Size of object header to request */ - hbool_t use_latest_format; /* Flag indicating the new group format should be used */ + hbool_t use_at_least_v18; /* Flag indicating the new group format should be used */ hid_t gcpl_id = gcrt_info->gcpl_id; /* Group creation property list ID */ herr_t ret_value = SUCCEED; /* Return value */ @@ -202,24 +202,23 @@ H5G__obj_create_real(H5F_t *f, hid_t dxpl_id, const H5O_ginfo_t *ginfo, /* Check for invalid access request */ if(0 == (H5F_INTENT(f) & H5F_ACC_RDWR)) - HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "no write intent on file") + HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "no write intent on file") - /* Check for using the latest version of the group format */ + /* Check for using the latest version of the group format which is introduced in v18 */ /* (add more checks for creating "new format" groups when needed) */ - if(H5F_USE_LATEST_FLAGS(f, H5F_LATEST_STYLE_GROUP) || linfo->track_corder - || (pline && pline->nused)) - use_latest_format = TRUE; + if((H5F_LOW_BOUND(f) >= H5F_LIBVER_V18) || linfo->track_corder || (pline && pline->nused)) + use_at_least_v18 = TRUE; else - use_latest_format = FALSE; + use_at_least_v18 = FALSE; /* Make certain that the creation order is being tracked if an index is * going to be built on it. */ if(linfo->index_corder && !linfo->track_corder) - HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "must track creation order to create index for it") + HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "must track creation order to create index for it") /* Check if we should be using the latest version of the group format */ - if(use_latest_format) { + if(use_at_least_v18) { H5O_link_t lnk; /* Temporary link message info for computing message size */ char null_char = '\0'; /* Character for creating null string */ size_t ginfo_size; /* Size of the group info message */ @@ -262,10 +261,10 @@ H5G__obj_create_real(H5F_t *f, hid_t dxpl_id, const H5O_ginfo_t *ginfo, * incremented if the object is added to the group directed graph. */ if(H5O_create(f, dxpl_id, hdr_size, (size_t)1, gcpl_id, oloc/*out*/) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create header") + HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create header") /* Check for format of group to create */ - if(use_latest_format) { + if(use_at_least_v18) { /* Insert link info message */ /* (Casting away const OK - QAK) */ if(H5O_msg_create(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, (void *)linfo, dxpl_id) < 0) diff --git a/src/H5HFcache.c b/src/H5HFcache.c index 069bf17..c940161 100644 --- a/src/H5HFcache.c +++ b/src/H5HFcache.c @@ -572,7 +572,7 @@ H5HF__cache_hdr_deserialize(const void *_image, size_t len, void *_udata, UINT32DECODE(image, hdr->pline_root_direct_filter_mask); /* Decode I/O filter information */ - if(NULL == (pline = (H5O_pline_t *)H5O_msg_decode(hdr->f, udata->dxpl_id, NULL, H5O_PLINE_ID, image))) + if(NULL == (pline = (H5O_pline_t *)H5O_msg_decode(hdr->f, udata->dxpl_id, NULL, H5O_PLINE_ID, len, image))) HGOTO_ERROR(H5E_HEAP, H5E_CANTDECODE, NULL, "can't decode I/O pipeline filters") /* Advance past filter info to checksum */ diff --git a/src/H5HFhdr.c b/src/H5HFhdr.c index 2f01ce6..89b3b47 100644 --- a/src/H5HFhdr.c +++ b/src/H5HFhdr.c @@ -424,11 +424,9 @@ H5HF_hdr_create(H5F_t *f, hid_t dxpl_id, const H5HF_create_t *cparam) if(NULL == H5O_msg_copy(H5O_PLINE_ID, &(cparam->pline), &(hdr->pline))) HGOTO_ERROR(H5E_HEAP, H5E_CANTCOPY, HADDR_UNDEF, "can't copy I/O filter pipeline") - /* Pay attention to the latest version flag for the file */ - if(H5F_USE_LATEST_FLAGS(hdr->f, H5F_LATEST_PLINE_MSG)) - /* Set the latest version for the I/O pipeline message */ - if(H5O_pline_set_latest_version(&(hdr->pline)) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTSET, HADDR_UNDEF, "can't set latest version of I/O filter pipeline") + /* Set the version for the I/O pipeline message */ + if(H5O_pline_set_version(hdr->f, &(hdr->pline)) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTSET, HADDR_UNDEF, "can't set version of I/O filter pipeline") /* Compute the I/O filters' encoded size */ if(0 == (hdr->filter_len = (unsigned)H5O_msg_raw_size(hdr->f, H5O_PLINE_ID, FALSE, &(hdr->pline)))) @@ -72,7 +72,6 @@ /* Local Variables */ /*******************/ - /*------------------------------------------------------------------------- * Function: H5Oopen diff --git a/src/H5Oainfo.c b/src/H5Oainfo.c index d8298a4..b85337a 100644 --- a/src/H5Oainfo.c +++ b/src/H5Oainfo.c @@ -35,7 +35,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_ainfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_ainfo_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_ainfo_copy(const void *_mesg, void *_dest); static size_t H5O_ainfo_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -105,7 +105,8 @@ H5FL_DEFINE_STATIC(H5O_ainfo_t); */ static void * H5O_ainfo_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_ainfo_t *ainfo = NULL; /* Attribute info */ unsigned char flags; /* Flags for encoding attribute info */ diff --git a/src/H5Oattr.c b/src/H5Oattr.c index cb802ea..79a0a52 100644 --- a/src/H5Oattr.c +++ b/src/H5Oattr.c @@ -26,7 +26,7 @@ /* PRIVATE PROTOTYPES */ static herr_t H5O_attr_encode(H5F_t *f, uint8_t *p, const void *mesg); static void *H5O_attr_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static void *H5O_attr_copy(const void *_mesg, void *_dest); static size_t H5O_attr_size(const H5F_t *f, const void *_mesg); static herr_t H5O_attr_free(void *mesg); @@ -121,7 +121,7 @@ H5FL_EXTERN(H5S_extent_t); --------------------------------------------------------------------------*/ static void * H5O_attr_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, - unsigned *ioflags, const uint8_t *p) + unsigned *ioflags, size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5A_t *attr = NULL; H5S_extent_t *extent; /*extent dimensionality information */ @@ -185,7 +185,7 @@ H5O_attr_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned H5_ATTR_UNUSED /* Decode the attribute's datatype */ if(NULL == (attr->shared->dt = (H5T_t *)(H5O_MSG_DTYPE->decode)(f, dxpl_id, open_oh, - ((flags & H5O_ATTR_FLAG_TYPE_SHARED) ? H5O_MSG_FLAG_SHARED : 0), ioflags, p))) + ((flags & H5O_ATTR_FLAG_TYPE_SHARED) ? H5O_MSG_FLAG_SHARED : 0), ioflags, attr->shared->dt_size, p))) HGOTO_ERROR(H5E_ATTR, H5E_CANTDECODE, NULL, "can't decode attribute datatype") if(attr->shared->version < H5O_ATTR_VERSION_2) p += H5O_ALIGN_OLD(attr->shared->dt_size); @@ -200,7 +200,7 @@ H5O_attr_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned H5_ATTR_UNUSED /* Decode attribute's dataspace extent */ if((extent = (H5S_extent_t *)(H5O_MSG_SDSPACE->decode)(f, dxpl_id, open_oh, - ((flags & H5O_ATTR_FLAG_SPACE_SHARED) ? H5O_MSG_FLAG_SHARED : 0), ioflags, p)) == NULL) + ((flags & H5O_ATTR_FLAG_SPACE_SHARED) ? H5O_MSG_FLAG_SHARED : 0), ioflags, attr->shared->ds_size, p)) == NULL) HGOTO_ERROR(H5E_ATTR, H5E_CANTDECODE, NULL, "can't decode attribute dataspace") /* Copy the extent information to the dataspace */ @@ -622,14 +622,23 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5O_attr_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void H5_ATTR_UNUSED *native_src, +H5O_attr_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *native_src, hbool_t *deleted, const H5O_copy_t *cpy_info, void H5_ATTR_UNUSED *udata) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + const H5A_t *attr_src = (const H5A_t *)native_src; /* Source attribute */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT /* check args */ HDassert(deleted); HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version allowed by the destination file's high bound */ + if(attr_src->shared->version > H5O_attr_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "attribute message version out of bounds") /* If we are not copying attributes into the destination file, indicate * that this message should be deleted. @@ -637,7 +646,8 @@ H5O_attr_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void H5_ATTR_UNUSED if(cpy_info->copy_without_attr) *deleted = TRUE; - FUNC_LEAVE_NOAPI(SUCCEED) +done: + FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_attr_pre_copy_file() */ diff --git a/src/H5Obogus.c b/src/H5Obogus.c index a3531ed..02e0e6a 100644 --- a/src/H5Obogus.c +++ b/src/H5Obogus.c @@ -38,7 +38,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_bogus_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_bogus_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static size_t H5O_bogus_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); static herr_t H5O_bogus_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE * stream, @@ -111,7 +111,8 @@ const H5O_msg_class_t H5O_MSG_BOGUS_INVALID[1] = {{ */ static void * H5O_bogus_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_bogus_t *mesg = NULL; void *ret_value; /* Return value */ diff --git a/src/H5Obtreek.c b/src/H5Obtreek.c index 4fd0577..1d2b607 100644 --- a/src/H5Obtreek.c +++ b/src/H5Obtreek.c @@ -28,7 +28,7 @@ #include "H5MMprivate.h" /* Memory management */ static void *H5O_btreek_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_btreek_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_btreek_copy(const void *_mesg, void *_dest); static size_t H5O_btreek_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -79,7 +79,8 @@ const H5O_msg_class_t H5O_MSG_BTREEK[1] = {{ */ static void * H5O_btreek_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_btreek_t *mesg; /* Native message */ void *ret_value = NULL; /* Return value */ diff --git a/src/H5Ocache.c b/src/H5Ocache.c index 8f4c155..94049ef 100644 --- a/src/H5Ocache.c +++ b/src/H5Ocache.c @@ -1515,7 +1515,7 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image H5O_cont_t *cont; /* Decode continuation message */ - cont = (H5O_cont_t *)(H5O_MSG_CONT->decode)(udata->f, udata->dxpl_id, NULL, 0, &ioflags, mesg->raw); + cont = (H5O_cont_t *)(H5O_MSG_CONT->decode)(udata->f, udata->dxpl_id, NULL, 0, &ioflags, mesg->raw_size, mesg->raw); H5_CHECKED_ASSIGN(cont->chunkno, unsigned, udata->cont_msg_info->nmsgs + 1, size_t); /* the next continuation message/chunk */ /* Save 'native' form of continuation message */ @@ -1531,7 +1531,7 @@ H5O__chunk_deserialize(H5O_t *oh, haddr_t addr, size_t len, const uint8_t *image /* Decode ref. count message */ HDassert(oh->version > H5O_VERSION_1); - refcount = (H5O_refcount_t *)(H5O_MSG_REFCOUNT->decode)(udata->f, udata->dxpl_id, NULL, 0, &ioflags, mesg->raw); + refcount = (H5O_refcount_t *)(H5O_MSG_REFCOUNT->decode)(udata->f, udata->dxpl_id, NULL, 0, &ioflags, mesg->raw_size, mesg->raw); /* Save 'native' form of ref. count message */ mesg->native = refcount; diff --git a/src/H5Ocache_image.c b/src/H5Ocache_image.c index a427b49..d2b65bb 100644 --- a/src/H5Ocache_image.c +++ b/src/H5Ocache_image.c @@ -38,7 +38,7 @@ /* Callbacks for message class */ static void *H5O__mdci_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O__mdci_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O__mdci_copy(const void *_mesg, void *_dest); @@ -99,7 +99,7 @@ H5FL_DEFINE(H5O_mdci_t); static void * H5O__mdci_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, - unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED *ioflags, size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_mdci_t *mesg; /* Native message */ void *ret_value = NULL; /* Return value */ diff --git a/src/H5Ocont.c b/src/H5Ocont.c index b002a32..f9a9768 100644 --- a/src/H5Ocont.c +++ b/src/H5Ocont.c @@ -37,7 +37,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_cont_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_cont_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static size_t H5O_cont_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); static herr_t H5O_cont_free(void *mesg); @@ -90,7 +90,8 @@ H5FL_DEFINE(H5O_cont_t); */ static void * H5O_cont_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_cont_t *cont = NULL; void *ret_value = NULL; /* Return value */ diff --git a/src/H5Ocopy.c b/src/H5Ocopy.c index aa2a9e0..74c02f4 100644 --- a/src/H5Ocopy.c +++ b/src/H5Ocopy.c @@ -415,6 +415,11 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out*/, /* Initialize header information */ oh_dst->version = oh_src->version; + + /* Version bounds check for destination object header */ + if(oh_dst->version > H5O_obj_ver_bounds[H5F_HIGH_BOUND(oloc_dst->file)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "destination object header version out of bounds") + oh_dst->flags = oh_src->flags; oh_dst->link_msgs_seen = oh_src->link_msgs_seen; oh_dst->attr_msgs_seen = oh_src->attr_msgs_seen; @@ -490,6 +495,12 @@ H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out*/, /* Decode the message if necessary. */ H5O_LOAD_NATIVE(oloc_src->file, dxpl_id, 0, oh_src, mesg_src, FAIL) + /* Save destination file pointer in cpy_info so that it can be used + in the pre_copy_file callback to obtain the destination file's + high bound. The high bound is used to index into the corresponding + message's array of versions for doing version bounds check. */ + cpy_info->file_dst = oloc_dst->file; + /* Perform "pre copy" operation on message */ if((copy_type->pre_copy_file)(oloc_src->file, mesg_src->native, &(deleted[mesgno]), cpy_info, cpy_udata) < 0) @@ -871,12 +882,19 @@ done: HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to release object header") /* Free destination object header on failure */ - if(ret_value < 0 && oh_dst && !inserted) { - if(H5O__free(oh_dst) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") - if(H5O_loc_reset(oloc_dst) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") - } /* end if */ + if(ret_value < 0) { + if(oh_dst && !inserted) { + if(H5O__free(oh_dst) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") + if(H5O_loc_reset(oloc_dst) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data") + } /* end if */ + + if(addr_map == NULL && cpy_udata) { + if(obj_class && obj_class->free_copy_file_udata) + obj_class->free_copy_file_udata(cpy_udata); + } /* end if */ + } FUNC_LEAVE_NOAPI_TAG(ret_value, FAIL) } /* end H5O_copy_header_real() */ diff --git a/src/H5Odrvinfo.c b/src/H5Odrvinfo.c index b9dea26..5921be3 100644 --- a/src/H5Odrvinfo.c +++ b/src/H5Odrvinfo.c @@ -28,7 +28,7 @@ #include "H5MMprivate.h" /* Memory management */ static void *H5O_drvinfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_drvinfo_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_drvinfo_copy(const void *_mesg, void *_dest); static size_t H5O_drvinfo_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -80,7 +80,8 @@ const H5O_msg_class_t H5O_MSG_DRVINFO[1] = {{ */ static void * H5O_drvinfo_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_drvinfo_t *mesg; /* Native message */ void *ret_value = NULL; /* Return value */ diff --git a/src/H5Odtype.c b/src/H5Odtype.c index a1c24b6..c557b5c 100644 --- a/src/H5Odtype.c +++ b/src/H5Odtype.c @@ -15,22 +15,22 @@ #define H5T_FRIEND /*prevent warning from including H5Tpkg */ -#include "H5private.h" /* Generic Functions */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* Files */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Gprivate.h" /* Groups */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Opkg.h" /* Object headers */ -#include "H5Tpkg.h" /* Datatypes */ -#include "H5VMprivate.h" /* Vectors and arrays */ +#include "H5private.h" /* Generic Functions */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* Files */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Gprivate.h" /* Groups */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Opkg.h" /* Object headers */ +#include "H5Tpkg.h" /* Datatypes */ +#include "H5VMprivate.h" /* Vectors and arrays */ /* PRIVATE PROTOTYPES */ static herr_t H5O_dtype_encode(H5F_t *f, uint8_t *p, const void *mesg); static void *H5O_dtype_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static void *H5O_dtype_copy(const void *_mesg, void *_dest); static size_t H5O_dtype_size(const H5F_t *f, const void *_mesg); static herr_t H5O_dtype_reset(void *_mesg); @@ -1094,7 +1094,7 @@ done: --------------------------------------------------------------------------*/ static void * H5O_dtype_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, - unsigned *ioflags/*in,out*/, const uint8_t *p) + unsigned *ioflags/*in,out*/, size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5T_t *dt = NULL; void *ret_value = NULL; /* Return value */ @@ -1516,7 +1516,7 @@ done: */ static herr_t H5O_dtype_pre_copy_file(H5F_t *file_src, const void *mesg_src, - hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t H5_ATTR_UNUSED *cpy_info, + hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void *_udata) { const H5T_t *dt_src = (const H5T_t *)mesg_src; /* Source datatype */ @@ -1528,6 +1528,13 @@ H5O_dtype_pre_copy_file(H5F_t *file_src, const void *mesg_src, /* check args */ HDassert(file_src); HDassert(dt_src); + HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version as indicated by the destination file's high bound */ + if(dt_src->shared->version > H5O_dtype_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "datatype message version out of bounds") /* If the user data is non-NULL, assume we are copying a dataset * and check if we need to make a copy of the datatype for later in diff --git a/src/H5Oefl.c b/src/H5Oefl.c index ba7a6ee..f066964 100644 --- a/src/H5Oefl.c +++ b/src/H5Oefl.c @@ -28,7 +28,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_efl_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_efl_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_efl_copy(const void *_mesg, void *_dest); static size_t H5O_efl_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -88,7 +88,8 @@ const H5O_msg_class_t H5O_MSG_EFL[1] = {{ */ static void * H5O_efl_decode(H5F_t *f, hid_t dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_efl_t *mesg = NULL; int version; diff --git a/src/H5Ofill.c b/src/H5Ofill.c index 5419762..849435c 100644 --- a/src/H5Ofill.c +++ b/src/H5Ofill.c @@ -21,28 +21,30 @@ #include "H5Omodule.h" /* This source code file is part of the H5O module */ -#include "H5private.h" /* Generic Functions */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Opkg.h" /* Object headers */ -#include "H5Pprivate.h" /* Property lists */ -#include "H5Sprivate.h" /* Dataspaces */ +#include "H5private.h" /* Generic Functions */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Opkg.h" /* Object headers */ +#include "H5Pprivate.h" /* Property lists */ +#include "H5Sprivate.h" /* Dataspaces */ static void *H5O_fill_old_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_fill_old_encode(H5F_t *f, uint8_t *p, const void *_mesg); static size_t H5O_fill_old_size(const H5F_t *f, const void *_mesg); static void *H5O_fill_new_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_fill_new_encode(H5F_t *f, uint8_t *p, const void *_mesg); static size_t H5O_fill_new_size(const H5F_t *f, const void *_mesg); static void *H5O_fill_copy(const void *_mesg, void *_dest); static herr_t H5O_fill_reset(void *_mesg); static herr_t H5O_fill_free(void *_mesg); +static herr_t H5O_fill_pre_copy_file(H5F_t *file_src, const void *mesg_src, + hbool_t *deleted, const H5O_copy_t *cpy_info, void *udata); static herr_t H5O_fill_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream, int indent, int fwidth); @@ -105,52 +107,59 @@ static herr_t H5O_fill_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *s /* This message derives from H5O message class, for old fill value before version 1.5 */ const H5O_msg_class_t H5O_MSG_FILL[1] = {{ - H5O_FILL_ID, /*message id number */ - "fill", /*message name for debugging */ - sizeof(H5O_fill_t), /*native message size */ - H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ - H5O_fill_shared_decode, /*decode message */ - H5O_fill_shared_encode, /*encode message */ - H5O_fill_copy, /*copy the native value */ - H5O_fill_shared_size, /*raw message size */ - H5O_fill_reset, /*free internal memory */ - H5O_fill_free, /* free method */ - H5O_fill_shared_delete, /* file delete method */ - H5O_fill_shared_link, /* link method */ - NULL, /* set share method */ - NULL, /*can share method */ - NULL, /* pre copy native value to file */ - H5O_fill_shared_copy_file, /* copy native value to file */ - H5O_fill_shared_post_copy_file, /* post copy native value to file */ - NULL, /* get creation index */ - NULL, /* set creation index */ - H5O_fill_shared_debug /*debug the message */ + H5O_FILL_ID, /*message id number */ + "fill", /*message name for debugging */ + sizeof(H5O_fill_t), /*native message size */ + H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ + H5O_fill_shared_decode, /*decode message */ + H5O_fill_shared_encode, /*encode message */ + H5O_fill_copy, /*copy the native value */ + H5O_fill_shared_size, /*raw message size */ + H5O_fill_reset, /*free internal memory */ + H5O_fill_free, /* free method */ + H5O_fill_shared_delete, /* file delete method */ + H5O_fill_shared_link, /* link method */ + NULL, /* set share method */ + NULL, /*can share method */ + H5O_fill_pre_copy_file, /* pre copy native value to file */ + H5O_fill_shared_copy_file, /* copy native value to file */ + H5O_fill_shared_post_copy_file, /* post copy native value to file */ + NULL, /* get creation index */ + NULL, /* set creation index */ + H5O_fill_shared_debug /*debug the message */ }}; /* This message derives from H5O message class, for new fill value after version 1.4 */ const H5O_msg_class_t H5O_MSG_FILL_NEW[1] = {{ - H5O_FILL_NEW_ID, /*message id number */ - "fill_new", /*message name for debugging */ - sizeof(H5O_fill_t), /*native message size */ - H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ - H5O_fill_new_shared_decode, /*decode message */ - H5O_fill_new_shared_encode, /*encode message */ - H5O_fill_copy, /*copy the native value */ - H5O_fill_new_shared_size, /*raw message size */ - H5O_fill_reset, /*free internal memory */ - H5O_fill_free, /* free method */ - H5O_fill_new_shared_delete, /* file delete method */ - H5O_fill_new_shared_link, /* link method */ - NULL, /* set share method */ - NULL, /*can share method */ - NULL, /* pre copy native value to file */ - H5O_fill_new_shared_copy_file, /* copy native value to file */ - H5O_fill_new_shared_post_copy_file, /* post copy native value to file */ - NULL, /* get creation index */ - NULL, /* set creation index */ - H5O_fill_new_shared_debug /*debug the message */ + H5O_FILL_NEW_ID, /*message id number */ + "fill_new", /*message name for debugging */ + sizeof(H5O_fill_t), /*native message size */ + H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ + H5O_fill_new_shared_decode, /*decode message */ + H5O_fill_new_shared_encode, /*encode message */ + H5O_fill_copy, /*copy the native value */ + H5O_fill_new_shared_size, /*raw message size */ + H5O_fill_reset, /*free internal memory */ + H5O_fill_free, /* free method */ + H5O_fill_new_shared_delete, /* file delete method */ + H5O_fill_new_shared_link, /* link method */ + NULL, /* set share method */ + NULL, /*can share method */ + H5O_fill_pre_copy_file, /* pre copy native value to file */ + H5O_fill_new_shared_copy_file, /* copy native value to file */ + H5O_fill_new_shared_post_copy_file, /* post copy native value to file */ + NULL, /* get creation index */ + NULL, /* set creation index */ + H5O_fill_new_shared_debug /*debug the message */ }}; +/* Format version bounds for fill value */ +const unsigned H5O_fill_ver_bounds[] = { + H5O_FILL_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_FILL_VERSION_2, /* H5F_LIBVER_V18 */ + H5O_FILL_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; + /* Masks, shift values & flags for fill value message */ #define H5O_FILL_MASK_ALLOC_TIME 0x03 #define H5O_FILL_SHIFT_ALLOC_TIME 0 @@ -171,11 +180,11 @@ H5FL_BLK_EXTERN(type_conv); * Function: H5O_fill_new_decode * * Purpose: Decode a new fill value message. The new fill value - * message is fill value plus space allocation time and - * fill value writing time and whether fill value is defined. + * message is fill value plus space allocation time and + * fill value writing time and whether fill value is defined. * - * Return: Success: Ptr to new message in native struct. - * Failure: NULL + * Return: Success: Ptr to new message in native struct. + * Failure: NULL * * Programmer: Raymond Lu * Feb 26, 2002 @@ -184,7 +193,8 @@ H5FL_BLK_EXTERN(type_conv); */ static void * H5O_fill_new_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_fill_t *fill = NULL; void *ret_value = NULL; /* Return value */ @@ -195,7 +205,7 @@ H5O_fill_new_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t HDassert(p); if(NULL == (fill = H5FL_CALLOC(H5O_fill_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill value message") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill value message") /* Version */ fill->version = *p++; @@ -276,7 +286,7 @@ done: if(!ret_value && fill) { if(fill->buf) H5MM_xfree(fill->buf); - fill = H5FL_FREE(H5O_fill_t, fill); + fill = H5FL_FREE(H5O_fill_t, fill); } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -298,7 +308,8 @@ done: */ static void * H5O_fill_old_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_fill_t *fill = NULL; /* Decoded fill value message */ void *ret_value = NULL; /* Return value */ @@ -336,7 +347,7 @@ done: if(!ret_value && fill) { if(fill->buf) H5MM_xfree(fill->buf); - fill = H5FL_FREE(H5O_fill_t, fill); + fill = H5FL_FREE(H5O_fill_t, fill); } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -347,8 +358,8 @@ done: * Function: H5O_fill_new_encode * * Purpose: Encode a new fill value message. The new fill value - * message is fill value plus space allocation time and - * fill value writing time and whether fill value is defined. + * message is fill value plus space allocation time and + * fill value writing time and whether fill value is defined. * * Return: Non-negative on success/Negative on failure * @@ -481,7 +492,7 @@ H5O_fill_old_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p, const void *_fill) * whether fill value is defined. * * Return: Success: Ptr to _DEST - * Failure: NULL + * Failure: NULL * * Programmer: Raymond Lu * Feb 26, 2002 @@ -491,16 +502,16 @@ H5O_fill_old_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p, const void *_fill) static void * H5O_fill_copy(const void *_src, void *_dst) { - const H5O_fill_t *src = (const H5O_fill_t *)_src; - H5O_fill_t *dst = (H5O_fill_t *)_dst; - void *ret_value = NULL; /* Return value */ + const H5O_fill_t *src = (const H5O_fill_t *)_src; + H5O_fill_t *dst = (H5O_fill_t *)_dst; + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOINIT HDassert(src); if(!dst && NULL == (dst = H5FL_MALLOC(H5O_fill_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill message") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill message") /* Shallow copy basic fields */ *dst = *src; @@ -516,9 +527,9 @@ H5O_fill_copy(const void *_src, void *_dst) /* Copy fill value and its size */ if(src->buf) { H5_CHECK_OVERFLOW(src->size, ssize_t, size_t); - if(NULL == (dst->buf = H5MM_malloc((size_t)src->size))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill value") - HDmemcpy(dst->buf, src->buf, (size_t)src->size); + if(NULL == (dst->buf = H5MM_malloc((size_t)src->size))) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fill value") + HDmemcpy(dst->buf, src->buf, (size_t)src->size); /* Check for needing to convert/copy fill value */ if(src->type) { @@ -579,9 +590,9 @@ done: if(!ret_value && dst) { if(dst->buf) H5MM_xfree(dst->buf); - if(dst->type) + if(dst->type) H5T_close(dst->type); - if(!_dst) + if(!_dst) dst = H5FL_FREE(H5O_fill_t, dst); } /* end if */ @@ -593,13 +604,13 @@ done: * Function: H5O_fill_new_size * * Purpose: Returns the size of the raw message in bytes not counting the - * message type or size fields, but only the data fields. This - * function doesn't take into account alignment. The new fill - * value message is fill value plus space allocation time and - * fill value writing time and whether fill value is defined. + * message type or size fields, but only the data fields. This + * function doesn't take into account alignment. The new fill + * value message is fill value plus space allocation time and + * fill value writing time and whether fill value is defined. * * Return: Success: Message data size in bytes w/o alignment. - * Failure: 0 + * Failure: 0 * * Programmer: Raymond Lu * Feb 26, 2002 @@ -609,8 +620,8 @@ done: static size_t H5O_fill_new_size(const H5F_t H5_ATTR_UNUSED *f, const void *_fill) { - const H5O_fill_t *fill = (const H5O_fill_t *)_fill; - size_t ret_value = 0; /* Return value */ + const H5O_fill_t *fill = (const H5O_fill_t *)_fill; + size_t ret_value = 0; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -721,8 +732,8 @@ H5O_fill_reset_dyn(H5O_fill_t *fill) } /* end if */ fill->size = 0; if(fill->type) { - H5T_close(fill->type); - fill->type = NULL; + H5T_close(fill->type); + fill->type = NULL; } /* end if */ done: @@ -792,6 +803,42 @@ H5O_fill_free(void *fill) /*------------------------------------------------------------------------- + * Function: H5O_fill_pre_copy_file + * + * Purpose: Perform any necessary actions before copying message between + * files. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Vailin Choi; Dec 2017 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O_fill_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src, + hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void H5_ATTR_UNUSED *udata) +{ + const H5O_fill_t *fill_src = (const H5O_fill_t *)mesg_src; /* Source fill value */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* check args */ + HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version allowed by the destination file's high bound */ + if(fill_src->version > H5O_fill_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "fill value message version out of bounds") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O_fill_pre_copy_file() */ + + +/*------------------------------------------------------------------------- * Function: H5O_fill_debug * * Purpose: Prints debugging info for the message. @@ -883,11 +930,11 @@ H5O_fill_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const void "Size:", fill->size); HDfprintf(stream, "%*s%-*s ", indent, "", fwidth, "Data type:"); if(fill->type) { - H5T_debug(fill->type, stream); - fprintf(stream, "\n"); + H5T_debug(fill->type, stream); + HDfprintf(stream, "\n"); } /* end if */ else - fprintf(stream, "<dataset type>\n"); + HDfprintf(stream, "<dataset type>\n"); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_fill_debug() */ @@ -897,9 +944,9 @@ H5O_fill_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const void * Function: H5O_fill_convert * * Purpose: Convert a fill value from whatever data type it currently has - * to the specified dataset type. The `type' field of the fill - * value struct will be set to NULL to indicate that it has the - * same type as the dataset. + * to the specified dataset type. The `type' field of the fill + * value struct will be set to NULL to indicate that it has the + * same type as the dataset. * * Return: Non-negative on success/Negative on failure * @@ -925,21 +972,21 @@ H5O_fill_convert(H5O_fill_t *fill, H5T_t *dset_type, hbool_t *fill_changed, hid_ /* No-op cases */ if(!fill->buf || !fill->type || 0 == H5T_cmp(fill->type, dset_type, FALSE)) { /* Don't need datatype for fill value */ - if(fill->type) + if(fill->type) H5T_close(fill->type); - fill->type = NULL; + fill->type = NULL; /* Note that the fill value info has changed */ *fill_changed = TRUE; - HGOTO_DONE(SUCCEED); + HGOTO_DONE(SUCCEED); } /* end if */ /* * Can we convert between source and destination data types? */ if(NULL == (tpath = H5T_path_find(fill->type, dset_type, NULL, NULL, dxpl_id, FALSE))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to convert between src and dst datatypes") + HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to convert between src and dst datatypes") /* Don't bother doing anything if there will be no actual conversion */ if(!H5T_path_noop(tpath)) { @@ -997,28 +1044,39 @@ done: /*------------------------------------------------------------------------- - * Function: H5O_fill_set_latest_version + * Function: H5O_fill_set_version * - * Purpose: Set the encoding for a fill value to the latest version. + * Purpose: Set the version to encode a fill value with. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, July 24, 2007 + * Programmer: Vailin Choi; December 2017 * *------------------------------------------------------------------------- */ herr_t -H5O_fill_set_latest_version(H5O_fill_t *fill) +H5O_fill_set_version(H5F_t *f, H5O_fill_t *fill) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + unsigned version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ + HDassert(f); HDassert(fill); - /* Set encoding of fill value to latest version */ - fill->version = H5O_FILL_VERSION_LATEST; + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(fill->version, H5O_fill_ver_bounds[H5F_LOW_BOUND(f)]); - FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5O_fill_set_latest_version() */ + /* Version bounds check */ + if(version > H5O_fill_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "Filter pipeline version out of bounds") + + /* Set the message version */ + fill->version = version; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O_fill_set_version() */ diff --git a/src/H5Ofsinfo.c b/src/H5Ofsinfo.c index 4d62f49..8369ae1 100644 --- a/src/H5Ofsinfo.c +++ b/src/H5Ofsinfo.c @@ -32,7 +32,8 @@ #include "H5Opkg.h" /* Object headers */ /* PRIVATE PROTOTYPES */ -static void *H5O_fsinfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); +static void *H5O_fsinfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags, + unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_fsinfo_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_fsinfo_copy(const void *_mesg, void *_dest); static size_t H5O_fsinfo_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -86,7 +87,8 @@ H5FL_DEFINE_STATIC(H5O_fsinfo_t); */ static void * H5O_fsinfo_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_fsinfo_t *fsinfo = NULL; /* File space info message */ H5F_mem_page_t ptype; /* Memory type for iteration */ diff --git a/src/H5Oginfo.c b/src/H5Oginfo.c index 468e07a..e551f28 100644 --- a/src/H5Oginfo.c +++ b/src/H5Oginfo.c @@ -33,7 +33,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_ginfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_ginfo_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_ginfo_copy(const void *_mesg, void *_dest); static size_t H5O_ginfo_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -95,7 +95,8 @@ H5FL_DEFINE_STATIC(H5O_ginfo_t); */ static void * H5O_ginfo_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_ginfo_t *ginfo = NULL; /* Pointer to group information message */ unsigned char flags; /* Flags for encoding group info */ diff --git a/src/H5Oint.c b/src/H5Oint.c index 6ab5393..08eb28d 100644 --- a/src/H5Oint.c +++ b/src/H5Oint.c @@ -131,6 +131,13 @@ const H5O_msg_class_t *const H5O_msg_class_g[] = { #endif /* H5O_ENABLE_BOGUS */ }; +/* Format version bounds for object header */ +const unsigned H5O_obj_ver_bounds[] = { + H5O_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_VERSION_2, /* H5F_LIBVER_V18 */ + H5O_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; + /* Declare a free list to manage the H5O_t struct */ H5FL_DEFINE(H5O_t); @@ -203,6 +210,53 @@ H5O__init_package(void) /*------------------------------------------------------------------------- + * Function: H5O_set_version + * + * Purpose: Sets the correct version to encode the object header. + * Chooses the oldest version possible, unless the file's + * low bound indicates otherwise. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Vailin Choi; December 2017 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O_set_version(H5F_t *f, H5O_t *oh, uint8_t oh_flags, hbool_t store_msg_crt_idx) +{ + uint8_t version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* check arguments */ + HDassert(f); + HDassert(oh); + + /* Set the correct version to encode object header with */ + if(store_msg_crt_idx || (oh_flags & H5O_HDR_ATTR_CRT_ORDER_TRACKED)) + version = H5O_VERSION_LATEST; + else + version = H5O_VERSION_1; + + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(version, (uint8_t)H5O_obj_ver_bounds[H5F_LOW_BOUND(f)]); + + /* Version bounds check */ + if(version > H5O_obj_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "object header version out of bounds") + + /* Set the message version */ + oh->version = version; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O_set_version() */ + + +/*------------------------------------------------------------------------- * Function: H5O_create * * Purpose: Creates a new object header. Allocates space for it and @@ -263,10 +317,10 @@ H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, size_t initial_rc, /* Initialize file-specific information for object header */ store_msg_crt_idx = H5F_STORE_MSG_CRT_IDX(f); - if(H5F_USE_LATEST_FLAGS(f, H5F_LATEST_OBJ_HEADER) || store_msg_crt_idx || (oh_flags & H5O_HDR_ATTR_CRT_ORDER_TRACKED)) - oh->version = H5O_VERSION_LATEST; - else - oh->version = H5O_VERSION_1; + + if(H5O_set_version(f, oh, oh_flags, store_msg_crt_idx) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set version of objecdt header") + oh->sizeof_size = H5F_SIZEOF_SIZE(f); oh->sizeof_addr = H5F_SIZEOF_ADDR(f); oh->swmr_write = !!(H5F_INTENT(f) & H5F_ACC_SWMR_WRITE); diff --git a/src/H5Olayout.c b/src/H5Olayout.c index 1a21926..2c4c4ce 100644 --- a/src/H5Olayout.c +++ b/src/H5Olayout.c @@ -39,7 +39,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O__layout_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O__layout_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O__layout_copy(const void *_mesg, void *_dest); static size_t H5O__layout_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -47,6 +47,8 @@ static herr_t H5O__layout_reset(void *_mesg); static herr_t H5O__layout_free(void *_mesg); static herr_t H5O__layout_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg); +static herr_t H5O__layout_pre_copy_file(H5F_t *file_src, const void *mesg_src, + hbool_t *deleted, const H5O_copy_t *cpy_info, void *udata); static void *H5O__layout_copy_file(H5F_t *file_src, void *mesg_src, H5F_t *file_dst, hbool_t *recompute_size, unsigned *mesg_flags, H5O_copy_t *cpy_info, void *udata, hid_t dxpl_id); @@ -69,7 +71,7 @@ const H5O_msg_class_t H5O_MSG_LAYOUT[1] = {{ NULL, /* link method */ NULL, /* set share method */ NULL, /* can share method */ - NULL, /* pre copy native value to file */ + H5O__layout_pre_copy_file, /* pre copy native value to file */ H5O__layout_copy_file, /* copy native value to file */ NULL, /* post copy native value to file */ NULL, /* get creation index */ @@ -99,7 +101,8 @@ H5FL_DEFINE(H5O_layout_t); */ static void * H5O__layout_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_layout_t *mesg = NULL; uint8_t *heap_block = NULL; @@ -549,11 +552,11 @@ done: static herr_t H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, const void *_mesg) { - const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg; - uint8_t *heap_block = NULL; + const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg; + uint8_t *heap_block = NULL; size_t *str_size = NULL; - unsigned u; - unsigned saved_latest_flags = H5F_GET_LATEST_FLAGS(f); + unsigned u; + H5F_libver_t saved_low, saved_high; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -570,6 +573,9 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, /* Layout class */ *p++ = mesg->type; + saved_low = H5F_LOW_BOUND(f); + saved_high = H5F_HIGH_BOUND(f); + /* Write out layout class specific information */ switch(mesg->type) { case H5D_COMPACT: @@ -691,7 +697,8 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, uint32_t chksum; size_t i; - H5F_SET_LATEST_FLAGS(f, H5F_LATEST_ALL_FLAGS); + if(H5F_set_libver_bounds(f, H5F_LIBVER_V110, H5F_LIBVER_V110) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "cannot set low/high bounds") /* Allocate array for caching results of strlen */ if(NULL == (str_size = (size_t *)H5MM_malloc(2 * mesg->storage.u.virt.list_nused *sizeof(size_t)))) @@ -789,7 +796,8 @@ H5O__layout_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, } /* end switch */ done: - H5F_SET_LATEST_FLAGS(f, saved_latest_flags); + if(H5F_set_libver_bounds(f, saved_low, saved_high) < 0) + HDONE_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "cannot reset low/high bounds") heap_block = (uint8_t *)H5MM_xfree(heap_block); str_size = (size_t *)H5MM_xfree(str_size); @@ -1051,6 +1059,42 @@ done: /*------------------------------------------------------------------------- + * Function: H5O__layout_pre_copy_file + * + * Purpose: Perform any necessary actions before copying message between + * files. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Vailin Choi; Dec 2017 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5O__layout_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src, + hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void H5_ATTR_UNUSED *udata) +{ + const H5O_layout_t *layout_src = (const H5O_layout_t *)mesg_src; /* Source layout */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* check args */ + HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version allowed by the destination file's high bound */ + if(layout_src->version > H5O_layout_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "layout message version out of bounds") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O__layout_pre_copy_file() */ + + +/*------------------------------------------------------------------------- * Function: H5O__layout_copy_file * * Purpose: Copies a message from _MESG to _DEST in file diff --git a/src/H5Olinfo.c b/src/H5Olinfo.c index cac4ed1..9917927 100644 --- a/src/H5Olinfo.c +++ b/src/H5Olinfo.c @@ -37,7 +37,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_linfo_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_linfo_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_linfo_copy(const void *_mesg, void *_dest); static size_t H5O_linfo_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -114,7 +114,8 @@ H5FL_DEFINE_STATIC(H5O_linfo_t); */ static void * H5O_linfo_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_linfo_t *linfo = NULL; /* Link info */ unsigned char index_flags; /* Flags for encoding link index info */ diff --git a/src/H5Olink.c b/src/H5Olink.c index 77872ad..7e7885c 100644 --- a/src/H5Olink.c +++ b/src/H5Olink.c @@ -39,7 +39,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_link_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_link_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_link_copy(const void *_mesg, void *_dest); static size_t H5O_link_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -118,7 +118,8 @@ H5FL_DEFINE_STATIC(H5O_link_t); */ static void * H5O_link_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_link_t *lnk = NULL; /* Pointer to link message */ size_t len = 0; /* Length of a string in the message */ diff --git a/src/H5Omessage.c b/src/H5Omessage.c index 158701b..809c6e9 100644 --- a/src/H5Omessage.c +++ b/src/H5Omessage.c @@ -1811,7 +1811,7 @@ done: */ void * H5O_msg_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned type_id, - const unsigned char *buf) + size_t buf_size, const unsigned char *buf) { const H5O_msg_class_t *type; /* Actual H5O class type for the ID */ unsigned ioflags = 0; /* Flags for decode routine */ @@ -1826,7 +1826,7 @@ H5O_msg_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned type_id, HDassert(type); /* decode */ - if((ret_value = (type->decode)(f, dxpl_id, open_oh, 0, &ioflags, buf)) == NULL) + if((ret_value = (type->decode)(f, dxpl_id, open_oh, 0, &ioflags, buf_size, buf)) == NULL) HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode message") done: diff --git a/src/H5Omtime.c b/src/H5Omtime.c index 7e7baea..47bc0b1 100644 --- a/src/H5Omtime.c +++ b/src/H5Omtime.c @@ -28,12 +28,12 @@ static void *H5O_mtime_new_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_mtime_new_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static size_t H5O_mtime_new_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); static void *H5O_mtime_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_mtime_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_mtime_copy(const void *_mesg, void *_dest); static size_t H5O_mtime_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -119,7 +119,8 @@ H5FL_DEFINE(time_t); */ static void * H5O_mtime_new_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { time_t *mesg; uint32_t tmp_time; /* Temporary copy of the time */ @@ -175,7 +176,8 @@ done: */ static void * H5O_mtime_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { time_t *mesg, the_time; struct tm tm; diff --git a/src/H5Oname.c b/src/H5Oname.c index 6292883..627a0f5 100644 --- a/src/H5Oname.c +++ b/src/H5Oname.c @@ -33,7 +33,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_name_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_name_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_name_copy(const void *_mesg, void *_dest); static size_t H5O_name_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -84,7 +84,8 @@ const H5O_msg_class_t H5O_MSG_NAME[1] = {{ */ static void * H5O_name_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_name_t *mesg; void *ret_value = NULL; /* Return value */ diff --git a/src/H5Opkg.h b/src/H5Opkg.h index 109d273..e970406 100644 --- a/src/H5Opkg.h +++ b/src/H5Opkg.h @@ -63,8 +63,8 @@ ) #define H5O_ALIGN_OH(O, X) \ H5O_ALIGN_VERS((O)->version, X) -#define H5O_ALIGN_F(F, X) \ - H5O_ALIGN_VERS((H5F_USE_LATEST_FLAGS(F, H5F_LATEST_OBJ_HEADER) ? H5O_VERSION_LATEST : H5O_VERSION_1), X) +#define H5O_ALIGN_F(F, X) \ + H5O_ALIGN_VERS(MAX(H5O_VERSION_1, (uint8_t)H5O_obj_ver_bounds[H5F_LOW_BOUND(F)]), X) /* Size of checksum (on disk) */ #define H5O_SIZEOF_CHKSUM 4 @@ -136,7 +136,7 @@ #define H5O_SIZEOF_MSGHDR_OH(O) \ H5O_SIZEOF_MSGHDR_VERS((O)->version, (O)->flags & H5O_HDR_ATTR_CRT_ORDER_TRACKED) #define H5O_SIZEOF_MSGHDR_F(F, C) \ - H5O_SIZEOF_MSGHDR_VERS((H5F_USE_LATEST_FLAGS(F, H5F_LATEST_OBJ_HEADER) || H5F_STORE_MSG_CRT_IDX(F)) ? H5O_VERSION_LATEST : H5O_VERSION_1, (C)) + H5O_SIZEOF_MSGHDR_VERS(MAX((H5F_STORE_MSG_CRT_IDX(F) ? H5O_VERSION_LATEST : H5O_VERSION_1), (uint8_t)H5O_obj_ver_bounds[H5F_LOW_BOUND(F)]), (C)) /* * Size of chunk "header" for each chunk @@ -186,7 +186,7 @@ \ /* Decode the message */ \ HDassert(msg_type->decode); \ - if(NULL == ((MSG)->native = (msg_type->decode)((F), (DXPL), (OH), (MSG)->flags, &ioflags, (MSG)->raw))) \ + if(NULL == ((MSG)->native = (msg_type->decode)((F), (DXPL), (OH), (MSG)->flags, &ioflags, (MSG)->raw_size, (MSG)->raw))) \ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, ERR, "unable to decode message") \ \ /* Mark the message dirty if it was changed by decoding */ \ @@ -228,7 +228,7 @@ struct H5O_msg_class_t { const char *name; /*for debugging */ size_t native_size; /*size of native message */ unsigned share_flags; /* Message sharing settings */ - void *(*decode)(H5F_t *, hid_t, H5O_t *, unsigned, unsigned *, const uint8_t *); + void *(*decode)(H5F_t *, hid_t, H5O_t *, unsigned, unsigned *, size_t, const uint8_t *); herr_t (*encode)(H5F_t *, hbool_t, uint8_t *, const void *); void *(*copy)(const void *, void *); /*copy native value */ size_t (*raw_size)(const H5F_t *, hbool_t, const void *);/*sizeof encoded message */ @@ -556,7 +556,6 @@ H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATASET[1]; /* Datatype Object. (H5O_TYPE_NAMED_DATATYPE - 2) */ H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATATYPE[1]; - /* Package-local function prototypes */ H5_DLL herr_t H5O_msg_flush(H5F_t *f, H5O_t *oh, H5O_mesg_t *mesg); H5_DLL herr_t H5O_flush_msgs(H5F_t *f, H5O_t *oh); @@ -642,6 +641,14 @@ H5_DLL herr_t H5O_attr_link(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg H5_DLL herr_t H5O_attr_count_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, hsize_t *nattrs); +/* Arrays of versions for: + Object header, Attribute/Fill value/Filter pipeline messages */ +/* Layout/Datatype/Dataspace arrays of versions are in H5Dpkg.h, H5Tpkg.h and H5Spkg.h */ +H5_DLLVAR const unsigned H5O_obj_ver_bounds[H5F_LIBVER_NBOUNDS]; +H5_DLLVAR const unsigned H5O_attr_ver_bounds[H5F_LIBVER_NBOUNDS]; +H5_DLLVAR const unsigned H5O_fill_ver_bounds[H5F_LIBVER_NBOUNDS]; +H5_DLLVAR const unsigned H5O_pline_ver_bounds[H5F_LIBVER_NBOUNDS]; + /* Testing functions */ #ifdef H5O_TESTING H5_DLL htri_t H5O_is_attr_empty_test(hid_t oid); diff --git a/src/H5Opline.c b/src/H5Opline.c index 2e52dbb..e59e192 100644 --- a/src/H5Opline.c +++ b/src/H5Opline.c @@ -34,7 +34,7 @@ /* PRIVATE PROTOTYPES */ static herr_t H5O_pline_encode(H5F_t *f, uint8_t *p, const void *mesg); static void *H5O_pline_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static void *H5O_pline_copy(const void *_mesg, void *_dest); static size_t H5O_pline_size(const H5F_t *f, const void *_mesg); static herr_t H5O_pline_reset(void *_mesg); @@ -89,6 +89,12 @@ const H5O_msg_class_t H5O_MSG_PLINE[1] = {{ H5O_pline_shared_debug /* debug the message */ }}; +/* Format version bounds for filter pipleline */ +const unsigned H5O_pline_ver_bounds[] = { + H5O_PLINE_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_PLINE_VERSION_2, /* H5F_LIBVER_V18 */ + H5O_PLINE_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /* Declare a free list to manage the H5O_pline_t struct */ H5FL_DEFINE(H5O_pline_t); @@ -109,12 +115,14 @@ H5FL_DEFINE(H5O_pline_t); */ static void * H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t p_size, const uint8_t *p) { H5O_pline_t *pline = NULL; /* Pipeline message */ H5Z_filter_info_t *filter; /* Filter to decode */ size_t name_length; /* Length of filter name */ size_t i; /* Local index variable */ + const uint8_t *p_end = p + p_size - 1; /* End of the p buffer */ void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -124,17 +132,24 @@ H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5 /* Allocate space for I/O pipeline message */ if(NULL == (pline = H5FL_CALLOC(H5O_pline_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Version */ pline->version = *p++; if(pline->version < H5O_PLINE_VERSION_1 || pline->version > H5O_PLINE_VERSION_LATEST) - HGOTO_ERROR(H5E_PLINE, H5E_CANTLOAD, NULL, "bad version number for filter pipeline message") + HGOTO_ERROR(H5E_PLINE, H5E_CANTLOAD, NULL, "bad version number for filter pipeline message") /* Number of filters */ pline->nused = *p++; - if(pline->nused > H5Z_MAX_NFILTERS) - HGOTO_ERROR(H5E_PLINE, H5E_CANTLOAD, NULL, "filter pipeline message has too many filters") + if(pline->nused > H5Z_MAX_NFILTERS) { + + /* Reset the number of filters used to avoid array traversal in error + * handling code. + */ + pline->nused = 0; + + HGOTO_ERROR(H5E_PLINE, H5E_CANTLOAD, NULL, "filter pipeline message has too many filters") + } /* Reserved */ if(pline->version == H5O_PLINE_VERSION_1) @@ -143,12 +158,12 @@ H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5 /* Allocate array for filters */ pline->nalloc = pline->nused; if(NULL == (pline->filter = (H5Z_filter_info_t *)H5MM_calloc(pline->nalloc * sizeof(pline->filter[0])))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Decode filters */ for(i = 0, filter = &pline->filter[0]; i < pline->nused; i++, filter++) { /* Filter ID */ - UINT16DECODE(p, filter->id); + UINT16DECODE(p, filter->id); /* Length of filter name */ if(pline->version > H5O_PLINE_VERSION_1 && filter->id < H5Z_FILTER_RESERVED) @@ -160,18 +175,18 @@ H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5 } /* end if */ /* Filter flags */ - UINT16DECODE(p, filter->flags); + UINT16DECODE(p, filter->flags); /* Number of filter parameters ("client data elements") */ - UINT16DECODE(p, filter->cd_nelmts); + UINT16DECODE(p, filter->cd_nelmts); /* Filter name, if there is one */ - if(name_length) { + if(name_length) { size_t actual_name_length; /* Actual length of name */ /* Determine actual name length (without padding, but with null terminator) */ - actual_name_length = HDstrlen((const char *)p) + 1; - HDassert(actual_name_length <= name_length); + actual_name_length = HDstrlen((const char *)p) + 1; + HDassert(actual_name_length <= name_length); /* Allocate space for the filter name, or use the internal buffer */ if(actual_name_length > H5Z_COMMON_NAME_LEN) { @@ -182,12 +197,12 @@ H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5 else filter->name = filter->_name; - HDstrncpy(filter->name, (const char *)p, actual_name_length); - p += name_length; - } /* end if */ + HDstrncpy(filter->name, (const char *)p, actual_name_length); + p += name_length; + } /* end if */ /* Filter parameters */ - if(filter->cd_nelmts) { + if(filter->cd_nelmts) { size_t j; /* Local index variable */ /* Allocate space for the client data elements, or use the internal buffer */ @@ -199,15 +214,20 @@ H5O_pline_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5 else filter->cd_values = filter->_cd_values; - /* - * Read the client data values and the padding - */ - for(j = 0; j < filter->cd_nelmts; j++) - UINT32DECODE(p, filter->cd_values[j]); + /* + * Read the client data values and the padding + */ + for (j = 0; j < filter->cd_nelmts; j++) { + if (p + 4 - 1 <= p_end) + UINT32DECODE(p, filter->cd_values[j]) + else + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "ran off the end of the buffer: current p = %p, p_size = %zu, p_end = %p", p, p_size, p_end) + } + if(pline->version == H5O_PLINE_VERSION_1) if(filter->cd_nelmts % 2) p += 4; /*padding*/ - } /* end if */ + } /* end if */ } /* end for */ /* Set return value */ @@ -496,23 +516,30 @@ H5O_pline_reset(void *mesg) FUNC_ENTER_NOAPI_NOINIT_NOERR + /* NOTE: This function can be called during error processing from + * other API calls so DO NOT ASSUME THAT ANY VALUES ARE SANE. + */ + HDassert(pline); - /* Free information for each filter */ - for(i = 0; i < pline->nused; i++) { - if(pline->filter[i].name && pline->filter[i].name != pline->filter[i]._name) - HDassert((HDstrlen(pline->filter[i].name) + 1) > H5Z_COMMON_NAME_LEN); - if(pline->filter[i].name != pline->filter[i]._name) - pline->filter[i].name = (char *)H5MM_xfree(pline->filter[i].name); - if(pline->filter[i].cd_values && pline->filter[i].cd_values != pline->filter[i]._cd_values) - HDassert(pline->filter[i].cd_nelmts > H5Z_COMMON_CD_VALUES); - if(pline->filter[i].cd_values != pline->filter[i]._cd_values) - pline->filter[i].cd_values = (unsigned *)H5MM_xfree(pline->filter[i].cd_values); - } /* end for */ + /* Free the filter information and array */ + if (pline->filter) { + + /* Free information for each filter */ + for(i = 0; i < pline->nused; i++) { + if(pline->filter[i].name && pline->filter[i].name != pline->filter[i]._name) + HDassert((HDstrlen(pline->filter[i].name) + 1) > H5Z_COMMON_NAME_LEN); + if(pline->filter[i].name != pline->filter[i]._name) + pline->filter[i].name = (char *)H5MM_xfree(pline->filter[i].name); + if(pline->filter[i].cd_values && pline->filter[i].cd_values != pline->filter[i]._cd_values) + HDassert(pline->filter[i].cd_nelmts > H5Z_COMMON_CD_VALUES); + if(pline->filter[i].cd_values != pline->filter[i]._cd_values) + pline->filter[i].cd_values = (unsigned *)H5MM_xfree(pline->filter[i].cd_values); + } /* end for */ - /* Free filter array */ - if(pline->filter) + /* Free filter array */ pline->filter = (H5Z_filter_info_t *)H5MM_xfree(pline->filter); + } /* Reset # of filters */ pline->nused = pline->nalloc = 0; @@ -566,16 +593,23 @@ H5O_pline_free(void *mesg) */ static herr_t H5O_pline_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src, - hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t H5_ATTR_UNUSED *cpy_info, void *_udata) + hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void *_udata) { - const H5O_pline_t *pline_src = (const H5O_pline_t *)mesg_src; /* Source datatype */ + const H5O_pline_t *pline_src = (const H5O_pline_t *)mesg_src; /* Source pline */ H5O_copy_file_ud_common_t *udata = (H5O_copy_file_ud_common_t *)_udata; /* Object copying user data */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* check args */ HDassert(pline_src); + HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version allowed by the destination file's high bound */ + if(pline_src->version > H5O_pline_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "pline message version out of bounds") /* If the user data is non-NULL, assume we are copying a dataset or group * and make a copy of the filter pipeline for later in @@ -664,28 +698,38 @@ H5O_pline_debug(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, const voi /*------------------------------------------------------------------------- - * Function: H5O_pline_set_latest_version + * Function: H5O_pline_set_version * - * Purpose: Set the encoding for a I/O filter pipeline to the latest version. + * Purpose: Set the version to encode an I/O filter pipeline with. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, July 24, 2007 + * Programmer: Vailin Choi; December 2017 * *------------------------------------------------------------------------- */ herr_t -H5O_pline_set_latest_version(H5O_pline_t *pline) +H5O_pline_set_version(H5F_t *f, H5O_pline_t *pline) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + unsigned version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ + HDassert(f); HDassert(pline); - /* Set encoding of I/O pipeline to latest version */ - pline->version = H5O_PLINE_VERSION_LATEST; + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(pline->version, H5O_pline_ver_bounds[H5F_LOW_BOUND(f)]); - FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5O_pline_set_latest_version() */ + /* Version bounds check */ + if(version > H5O_pline_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_PLINE, H5E_BADRANGE, FAIL, "Filter pipeline version out of bounds") + /* Set the message version */ + pline->version = version; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5O_pline_set_version() */ diff --git a/src/H5Oprivate.h b/src/H5Oprivate.h index 4b74d8f..9f01a9a 100644 --- a/src/H5Oprivate.h +++ b/src/H5Oprivate.h @@ -177,7 +177,12 @@ typedef struct H5O_copy_t { H5SL_t *dst_dt_list; /* Skip list to hold committed datatypes in dest file */ hbool_t dst_dt_list_complete; /* Whether the destination datatype list is complete (i.e. not only populated with "suggestions" from H5Padd_merge_committed_dtype_path) */ H5O_t *oh_dst; /* The destination object header */ - void *shared_fo; /* The shared pointer for the object */ + H5F_t *file_dst; /* The destination file pointer */ + /* This is used in the pre_copy_file callback to obtain + the destination file's high bound. The high bound + is used to index into the corresponding message's + array of versions for doing version bounds check. */ + void *shared_fo; /* The shared pointer for the src object */ H5O_mcdt_search_cb_t mcdt_cb; /* The callback to invoke before searching the global list of committed datatypes at destination */ void *mcdt_ud; /* User data passed to callback */ } H5O_copy_t; @@ -930,7 +935,7 @@ H5_DLL herr_t H5O_msg_get_crt_index(unsigned type_id, const void *mesg, H5_DLL herr_t H5O_msg_encode(H5F_t *f, unsigned type_id, hbool_t disable_shared, unsigned char *buf, const void *obj); H5_DLL void* H5O_msg_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned type_id, const unsigned char *buf); + unsigned type_id, size_t buf_size, const unsigned char *buf); H5_DLL herr_t H5O_msg_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned type_id, void *mesg); H5_DLL herr_t H5O_msg_get_flags(const H5O_loc_t *loc, unsigned type_id, hid_t dxpl_id, uint8_t *flags); @@ -967,14 +972,14 @@ H5_DLL hsize_t H5O_efl_total_size(H5O_efl_t *efl); /* Fill value operators */ H5_DLL herr_t H5O_fill_reset_dyn(H5O_fill_t *fill); H5_DLL herr_t H5O_fill_convert(H5O_fill_t *fill, H5T_t *type, hbool_t *fill_changed, hid_t dxpl_id); -H5_DLL herr_t H5O_fill_set_latest_version(H5O_fill_t *fill); +H5_DLL herr_t H5O_fill_set_version(H5F_t * f, H5O_fill_t *fill); /* Link operators */ H5_DLL herr_t H5O_link_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg); /* Filter pipeline operators */ -H5_DLL herr_t H5O_pline_set_latest_version(H5O_pline_t *pline); +H5_DLL herr_t H5O_pline_set_version(H5F_t *f, H5O_pline_t *pline); /* Shared message operators */ H5_DLL herr_t H5O_set_shared(H5O_shared_t *dst, const H5O_shared_t *src); diff --git a/src/H5Orefcount.c b/src/H5Orefcount.c index af68417..6f052ce 100644 --- a/src/H5Orefcount.c +++ b/src/H5Orefcount.c @@ -33,7 +33,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_refcount_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_refcount_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_refcount_copy(const void *_mesg, void *_dest); static size_t H5O_refcount_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -90,7 +90,8 @@ H5FL_DEFINE_STATIC(H5O_refcount_t); */ static void * H5O_refcount_decode(H5F_t H5_ATTR_UNUSED *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_refcount_t *refcount = NULL; /* Reference count */ void *ret_value = NULL; /* Return value */ diff --git a/src/H5Osdspace.c b/src/H5Osdspace.c index 3fe5652..f5d3c61 100644 --- a/src/H5Osdspace.c +++ b/src/H5Osdspace.c @@ -26,7 +26,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_sdspace_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_sdspace_encode(H5F_t *f, uint8_t *p, const void *_mesg); static void *H5O_sdspace_copy(const void *_mesg, void *_dest); static size_t H5O_sdspace_size(const H5F_t *f, const void *_mesg); @@ -110,7 +110,8 @@ H5FL_ARR_EXTERN(hsize_t); --------------------------------------------------------------------------*/ static void * H5O_sdspace_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5S_extent_t *sdim = NULL;/* New extent dimensionality structure */ unsigned flags, version; @@ -441,7 +442,7 @@ H5O_sdspace_free(void *mesg) */ static herr_t H5O_sdspace_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src, - hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t H5_ATTR_UNUSED *cpy_info, void *_udata) + hbool_t H5_ATTR_UNUSED *deleted, const H5O_copy_t *cpy_info, void *_udata) { const H5S_extent_t *src_space_extent = (const H5S_extent_t *)mesg_src; /* Source dataspace extent */ H5D_copy_file_ud_t *udata = (H5D_copy_file_ud_t *)_udata; /* Dataset copying user data */ @@ -452,6 +453,13 @@ H5O_sdspace_pre_copy_file(H5F_t H5_ATTR_UNUSED *file_src, const void *mesg_src, /* check args */ HDassert(file_src); HDassert(src_space_extent); + HDassert(cpy_info); + HDassert(cpy_info->file_dst); + + /* Check to ensure that the version of the message to be copied does not exceed + the message version allowed by the destination file's high bound */ + if(src_space_extent->version > H5O_sdspace_ver_bounds[H5F_HIGH_BOUND(cpy_info->file_dst)]) + HGOTO_ERROR(H5E_OHDR, H5E_BADRANGE, FAIL, "dataspace message version out of bounds") /* If the user data is non-NULL, assume we are copying a dataset * and make a copy of the dataspace extent for later in the object copying diff --git a/src/H5Oshared.c b/src/H5Oshared.c index db2d0cc..9217d3d 100644 --- a/src/H5Oshared.c +++ b/src/H5Oshared.c @@ -156,7 +156,7 @@ H5O_shared_read(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned *ioflags, HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "can't read message from fractal heap.") /* Decode the message */ - if(NULL == (ret_value = (type->decode)(f, dxpl_id, open_oh, 0, ioflags, mesg_ptr))) + if(NULL == (ret_value = (type->decode)(f, dxpl_id, open_oh, 0, ioflags, mesg_size, mesg_ptr))) HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "can't decode shared message.") } /* end if */ else { diff --git a/src/H5Oshared.h b/src/H5Oshared.h index 2465e65..93cc11f 100644 --- a/src/H5Oshared.h +++ b/src/H5Oshared.h @@ -47,7 +47,7 @@ */ static H5_INLINE void * H5O_SHARED_DECODE(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags, - unsigned *ioflags, const uint8_t *p) + unsigned *ioflags, size_t p_size, const uint8_t *p) { void *ret_value = NULL; /* Return value */ @@ -67,7 +67,7 @@ H5O_SHARED_DECODE(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags, if(mesg_flags & H5O_MSG_FLAG_SHARED) { /* Retrieve native message info indirectly through shared message */ if(NULL == (ret_value = H5O_shared_decode(f, dxpl_id, open_oh, ioflags, p, H5O_SHARED_TYPE))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode shared message") + HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode shared message") /* We currently do not support automatically fixing shared messages */ #ifdef H5_STRICT_FORMAT_CHECKS @@ -79,8 +79,8 @@ H5O_SHARED_DECODE(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags, } /* end if */ else { /* Decode native message directly */ - if(NULL == (ret_value = H5O_SHARED_DECODE_REAL(f, dxpl_id, open_oh, mesg_flags, ioflags, p))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode native message") + if(NULL == (ret_value = H5O_SHARED_DECODE_REAL(f, dxpl_id, open_oh, mesg_flags, ioflags, p_size, p))) + HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode native message") } /* end else */ done: diff --git a/src/H5Oshmesg.c b/src/H5Oshmesg.c index 1cbfb05..f3fe9d1 100644 --- a/src/H5Oshmesg.c +++ b/src/H5Oshmesg.c @@ -28,7 +28,7 @@ #include "H5MMprivate.h" /* Memory management */ static void *H5O_shmesg_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_shmesg_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_shmesg_copy(const void *_mesg, void *_dest); static size_t H5O_shmesg_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -76,7 +76,8 @@ const H5O_msg_class_t H5O_MSG_SHMESG[1] = {{ */ static void * H5O_shmesg_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_shmesg_table_t *mesg; /* Native message */ void *ret_value = NULL; /* Return value */ diff --git a/src/H5Ostab.c b/src/H5Ostab.c index 5c840a6..6f02d72 100644 --- a/src/H5Ostab.c +++ b/src/H5Ostab.c @@ -36,7 +36,7 @@ /* PRIVATE PROTOTYPES */ static void *H5O_stab_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, - unsigned mesg_flags, unsigned *ioflags, const uint8_t *p); + unsigned mesg_flags, unsigned *ioflags, size_t p_size, const uint8_t *p); static herr_t H5O_stab_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg); static void *H5O_stab_copy(const void *_mesg, void *_dest); static size_t H5O_stab_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg); @@ -97,7 +97,8 @@ H5FL_DEFINE_STATIC(H5O_stab_t); */ static void * H5O_stab_decode(H5F_t *f, hid_t H5_ATTR_UNUSED dxpl_id, H5O_t H5_ATTR_UNUSED *open_oh, - unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, const uint8_t *p) + unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, + size_t H5_ATTR_UNUSED p_size, const uint8_t *p) { H5O_stab_t *stab = NULL; void *ret_value = NULL; /* Return value */ @@ -842,7 +842,8 @@ H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) H5P_genplist_t *plist; /* Property list to query */ H5P_genplist_t *fapl_plist; hid_t new_fapl_id; - hbool_t latest_format = TRUE; + H5F_libver_t low_bound = H5F_LIBVER_V110; + H5F_libver_t high_bound = H5F_LIBVER_V110; herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) @@ -852,19 +853,8 @@ H5Pencode(hid_t plist_id, void *buf, size_t *nalloc) if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list"); - /* Make a copy of the default file access property list */ - if(NULL == (fapl_plist = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") - if((new_fapl_id = H5P_copy_plist(fapl_plist, FALSE)) < 0) - HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "can't copy file access property list") - - /* Set latest format in fapl_plist */ - /* This will eventually be used by VDS to encode datasets via H5P__dcrt_layout_enc() */ - if(H5P_set(fapl_plist, H5F_ACS_LATEST_FORMAT_NAME, &latest_format) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'latest format' flag") - /* Call the internal encode routine */ - if((ret_value = H5P__encode(plist, TRUE, buf, nalloc, new_fapl_id)) < 0) + if((ret_value = H5P__encode(plist, TRUE, buf, nalloc, H5P_FILE_ACCESS_DEFAULT)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to encode property list"); done: diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index a000351..76a2658 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -374,14 +374,33 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size, void *_udata) uint8_t *tmp_p; size_t tmp_size; size_t u; /* Local index variable */ + H5P_genplist_t *fapl_plist; /* The file access property list */ + hid_t new_fapl_id; /* The file access property list ID */ + H5F_libver_t low_bound = H5F_LIBVER_V110; /* Set the low bound in fapl to latest */ + H5F_libver_t high_bound = H5F_LIBVER_V110; /* Set the high bound in fapl to latest */ herr_t ret_value = SUCCEED; /* Return value */ + FUNC_ENTER_STATIC /* Sanity check */ HDassert(layout); HDassert(size); + /* Make a copy of the default file access property list */ + if(NULL == (fapl_plist = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") + + /* Set latest format in fapl_plist */ + /* This will eventually be used by VDS to encode datasets via H5S_encode() */ + if(H5P_set(fapl_plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &low_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'low' bound for library format versions") + if(H5P_set(fapl_plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &high_bound) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set 'high' bound for library format versions") + + if((new_fapl_id = H5P_copy_plist(fapl_plist, FALSE)) < 0) + HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "can't copy file access property list") + if(NULL != *pp) { /* Encode layout type */ *(*pp)++ = (uint8_t)layout->type; @@ -427,14 +446,15 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size, void *_udata) * list before we get here. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size, udata->fapl_id) < 0) + + if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += (size_t)(*pp - tmp_p); /* Virtual dataset selection. Same notes as above apply. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size, udata->fapl_id) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, pp, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += (size_t)(*pp - tmp_p); } /* end for */ @@ -467,14 +487,14 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size, void *_udata) /* Source selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size, udata->fapl_id) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_select, &tmp_p, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += tmp_size; /* Virtual dataset selection */ tmp_size = (size_t)0; tmp_p = NULL; - if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size, udata->fapl_id) < 0) + if(H5S_encode(layout->storage.u.virt.list[u].source_dset.virtual_select, &tmp_p, &tmp_size, new_fapl_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize virtual selection") *size += tmp_size; } /* end for */ @@ -1116,7 +1136,7 @@ H5P__dcrt_fill_value_dec(const void **_pp, void *_value) dt_size = (size_t)enc_value; /* Decode type */ - if(NULL == (fill->type = H5T_decode(*pp))) + if(NULL == (fill->type = H5T_decode(dt_size, *pp))) HGOTO_ERROR(H5E_PLIST, H5E_CANTDECODE, FAIL, "can't decode fill value datatype") *pp += dt_size; } /* end if */ diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index b85b82a..13409d2 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -140,11 +140,19 @@ #define H5F_ACS_MULTI_TYPE_DEF H5FD_MEM_DEFAULT #define H5F_ACS_MULTI_TYPE_ENC H5P__facc_multi_type_enc #define H5F_ACS_MULTI_TYPE_DEC H5P__facc_multi_type_dec -/* Definition for 'use latest format version' flag */ -#define H5F_ACS_LATEST_FORMAT_SIZE sizeof(hbool_t) -#define H5F_ACS_LATEST_FORMAT_DEF FALSE -#define H5F_ACS_LATEST_FORMAT_ENC H5P__encode_hbool_t -#define H5F_ACS_LATEST_FORMAT_DEC H5P__decode_hbool_t + +/* Definition for "low" bound of library format versions */ +#define H5F_ACS_LIBVER_LOW_BOUND_SIZE sizeof(H5F_libver_t) +#define H5F_ACS_LIBVER_LOW_BOUND_DEF H5F_LIBVER_EARLIEST +#define H5F_ACS_LIBVER_LOW_BOUND_ENC H5P__facc_libver_type_enc +#define H5F_ACS_LIBVER_LOW_BOUND_DEC H5P__facc_libver_type_dec + +/* Definition for "high" bound of library format versions */ +#define H5F_ACS_LIBVER_HIGH_BOUND_SIZE sizeof(H5F_libver_t) +#define H5F_ACS_LIBVER_HIGH_BOUND_DEF H5F_LIBVER_LATEST +#define H5F_ACS_LIBVER_HIGH_BOUND_ENC H5P__facc_libver_type_enc +#define H5F_ACS_LIBVER_HIGH_BOUND_DEC H5P__facc_libver_type_dec + /* Definition for whether to query the file descriptor from the core VFD * instead of the memory address. (Private to library) */ @@ -288,6 +296,8 @@ static herr_t H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t static herr_t H5P__facc_fclose_degree_dec(const void **pp, void *value); static herr_t H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void *udata); static herr_t H5P__facc_multi_type_dec(const void **_pp, void *value); +static herr_t H5P__facc_libver_type_enc(const void *value, void **_pp, size_t *size); +static herr_t H5P__facc_libver_type_dec(const void **_pp, void *value); /* Metadata cache log location property callbacks */ static herr_t H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void *udata); @@ -352,7 +362,10 @@ static const hsize_t H5F_def_family_offset_g = H5F_ACS_FAMILY_OFFSET_DEF; static const hsize_t H5F_def_family_newsize_g = H5F_ACS_FAMILY_NEWSIZE_DEF; /* Default size of new files for family VFD */ static const hbool_t H5F_def_family_to_sec2_g = H5F_ACS_FAMILY_TO_SEC2_DEF; /* Default ?? for family VFD */ static const H5FD_mem_t H5F_def_mem_type_g = H5F_ACS_MULTI_TYPE_DEF; /* Default file space type for multi VFD */ -static const hbool_t H5F_def_latest_format_g = H5F_ACS_LATEST_FORMAT_DEF; /* Default setting for "use the latest version of the format" flag */ + +static const H5F_libver_t H5F_def_libver_low_bound_g = H5F_ACS_LIBVER_LOW_BOUND_DEF; /* Default setting for "low" bound of format version */ +static const H5F_libver_t H5F_def_libver_high_bound_g = H5F_ACS_LIBVER_HIGH_BOUND_DEF; /* Default setting for "high" bound of format version */ + static const hbool_t H5F_def_want_posix_fd_g = H5F_ACS_WANT_POSIX_FD_DEF; /* Default setting for retrieving 'handle' from core VFD */ static const unsigned H5F_def_efc_size_g = H5F_ACS_EFC_SIZE_DEF; /* Default external file cache size */ static const H5FD_file_image_info_t H5F_def_file_image_info_g = H5F_ACS_FILE_IMAGE_INFO_DEF; /* Default file image info and callbacks */ @@ -374,7 +387,7 @@ static const size_t H5F_def_page_buf_size_g = H5F_ACS_PAGE_BUFFER_SIZE_DEF; static const unsigned H5F_def_page_buf_min_meta_perc_g = H5F_ACS_PAGE_BUFFER_MIN_META_PERC_DEF; /* Default page buffer minimum metadata size */ static const unsigned H5F_def_page_buf_min_raw_perc_g = H5F_ACS_PAGE_BUFFER_MIN_RAW_PERC_DEF; /* Default page buffer minumum raw data size */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_reg_prop * @@ -491,9 +504,15 @@ H5P__facc_reg_prop(H5P_genclass_t *pclass) NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the 'use the latest version of the format' flag */ - if(H5P_register_real(pclass, H5F_ACS_LATEST_FORMAT_NAME, H5F_ACS_LATEST_FORMAT_SIZE, &H5F_def_latest_format_g, - NULL, NULL, NULL, H5F_ACS_LATEST_FORMAT_ENC, H5F_ACS_LATEST_FORMAT_DEC, + /* Register the 'low' bound of library format versions */ + if(H5P_register_real(pclass, H5F_ACS_LIBVER_LOW_BOUND_NAME, H5F_ACS_LIBVER_LOW_BOUND_SIZE, &H5F_def_libver_low_bound_g, + NULL, NULL, NULL, H5F_ACS_LIBVER_LOW_BOUND_ENC, H5F_ACS_LIBVER_LOW_BOUND_DEC, + NULL, NULL, NULL, NULL) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + + /* Register the 'high' bound of library format versions */ + if(H5P_register_real(pclass, H5F_ACS_LIBVER_HIGH_BOUND_NAME, H5F_ACS_LIBVER_HIGH_BOUND_SIZE, &H5F_def_libver_high_bound_g, + NULL, NULL, NULL, H5F_ACS_LIBVER_HIGH_BOUND_ENC, H5F_ACS_LIBVER_HIGH_BOUND_DEC, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") @@ -608,7 +627,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_reg_prop() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_alignment * @@ -666,7 +685,7 @@ done: FUNC_LEAVE_API(ret_value) } - + /*------------------------------------------------------------------------- * Function: H5Pget_alignment * @@ -707,7 +726,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_alignment() */ - + /*------------------------------------------------------------------------- * Function: H5P_set_driver * @@ -755,7 +774,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_set_driver() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_driver * @@ -798,7 +817,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_driver() */ - + /*------------------------------------------------------------------------- * Function: H5P_peek_driver * @@ -842,7 +861,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_peek_driver() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_driver * @@ -883,7 +902,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_driver() */ - + /*------------------------------------------------------------------------- * Function: H5P_peek_driver_info * @@ -925,7 +944,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_peek_driver_info() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_driver_info * @@ -965,7 +984,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_driver_info() */ - + /*------------------------------------------------------------------------- * Function: H5P__file_driver_copy * @@ -1031,7 +1050,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__file_driver_copy() */ - + /*------------------------------------------------------------------------- * Function: H5P__file_driver_free * @@ -1083,7 +1102,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__file_driver_free() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_create * @@ -1112,7 +1131,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_create() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_set * @@ -1145,7 +1164,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_set() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_get * @@ -1178,7 +1197,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_get() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_del * @@ -1207,7 +1226,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_del() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_copy * @@ -1236,7 +1255,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_copy() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_cmp * @@ -1295,7 +1314,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_cmp() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_driver_close * @@ -1324,7 +1343,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_driver_close() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_family_offset * @@ -1363,7 +1382,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_family_offset() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_family_offset * @@ -1404,7 +1423,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_family_offset() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_multi_type * @@ -1443,7 +1462,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_multi_type() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_multi_type * @@ -1484,7 +1503,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_multi_type() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_cache * @@ -1538,7 +1557,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_cache() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_cache * @@ -1590,7 +1609,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_cache() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_mdc_image_config * @@ -1634,7 +1653,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pset_mdc_image_config() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_mdc_image_config * @@ -1685,7 +1704,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pget_mdc_image_config() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_mdc_config * @@ -1729,7 +1748,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pset_mdc_config() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_mdc_config * @@ -1780,7 +1799,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pget_mdc_config() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_gc_references * @@ -1833,7 +1852,7 @@ done: FUNC_LEAVE_API(ret_value) } - + /*------------------------------------------------------------------------- * Function: H5Pget_gc_references * @@ -1876,7 +1895,7 @@ done: FUNC_LEAVE_API(ret_value) } - + /*------------------------------------------------------------------------- * Function: H5Pset_fclose_degree * @@ -1912,7 +1931,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_fclose_degree() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_fclose_degree * @@ -1947,7 +1966,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_fclose_degree() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_meta_block_size * @@ -1998,7 +2017,7 @@ done: FUNC_LEAVE_API(ret_value) } - + /*------------------------------------------------------------------------- * Function: H5Pget_meta_block_size * @@ -2042,7 +2061,7 @@ done: FUNC_LEAVE_API(ret_value) } - + /*------------------------------------------------------------------------- * Function: H5Pset_sieve_buf_size * @@ -2093,7 +2112,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_sieve_buf_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_sieve_buf_size * @@ -2136,7 +2155,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_sieve_buf_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_small_data_block_size * @@ -2182,7 +2201,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_small_data_block_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_small_data_block_size * @@ -2221,7 +2240,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_small_data_block_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_libver_bounds * @@ -2301,6 +2320,24 @@ done: * releases and then map down to the previous actual library release which * had a format change. * + * Note #3: The enumerated define for H5F_libver_t in 1.10 is: + * typedef enum H5F_libver_t { + * H5F_LIBVER_ERROR = -1, + * H5F_LIBVER_EARLIEST = 0, + * H5F_LIBVER_V18 = 1, + * H5F_LIBVER_V110 = 2, + * H5F_LIBVER_NBOUNDS + * } H5F_libver_t; + * #define H5F_LIBVER_LATEST H5F_LIBVER_V110 + * + * The library supports five pairs of (low, high) combinations via H5Pset_libver_bounds(): + * 1) H5F_LIBVER_EARLIEST, H5F_LIBVER_V18 + * 2) H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST + * 4) H5F_LIBVER_V18, H5F_LIBVER_V18 + * 4) H5F_LIBVER_V18, H5F_LIBVER_LATEST + * 5) H5F_LIBVER_LATEST, H5F_LIBVER_LATEST + * See detailed description in the RFC: Setting Bounds for Object Creation in HDF5 1.10.0. + * * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol @@ -2309,42 +2346,48 @@ done: *------------------------------------------------------------------------- */ herr_t -H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, - H5F_libver_t high) +H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, H5F_libver_t high) { H5P_genplist_t *plist; /* Property list pointer */ - hbool_t latest; /* Whether to use the latest version or not */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE3("e", "iFvFv", plist_id, low, high); /* Check args */ - /* (Note that this is _really_ restricted right now, we'll want to loosen - * this up more as we add features - QAK) - */ - if(high != H5F_LIBVER_LATEST) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid high library version bound") + if(low < 0 || low > H5F_LIBVER_LATEST) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "low bound is not valid") + + if(high < 0 || high > H5F_LIBVER_LATEST) + HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "high bound is not valid") + + /* (earliest, earliest), (latest, earliest), (v18, earliest) are not valid combinations */ + if(high == H5F_LIBVER_EARLIEST) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Invalid (low,high) combination of library version bound") + + /* (latest, v18) is not valid combination */ + if(high < low) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Invalid (low,high) combination of library version bound") /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(plist_id, H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Set values */ - latest = (hbool_t)((low == H5F_LIBVER_LATEST) ? TRUE : FALSE); - if(H5P_set(plist, H5F_ACS_LATEST_FORMAT_NAME, &latest) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set library version bounds") - + if(H5P_set(plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, &low) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set low bound for library format versions") + if(H5P_set(plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, &high) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set high bound for library format versions") done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_libver_bounds() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_libver_bounds * * Purpose: Returns the current settings for the library version format bounds - * from a file access property list. + * from a file access property list. * * Return: Non-negative on success/Negative on failure * @@ -2358,7 +2401,6 @@ H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low/*out*/, H5F_libver_t *high/*out*/) { H5P_genplist_t *plist; /* Property list pointer */ - hbool_t latest; /* Whether to use the latest version or not */ herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) @@ -2368,22 +2410,22 @@ H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low/*out*/, if(NULL == (plist = H5P_object_verify(plist_id, H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - /* Get value */ - if(H5P_get(plist, H5F_ACS_LATEST_FORMAT_NAME, &latest) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get library version bounds") + /* Get values */ + if(low) { + if(H5P_get(plist, H5F_ACS_LIBVER_LOW_BOUND_NAME, low) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get low bound for library format versions") + } - /* Check for setting values to return */ - /* (Again, this is restricted now, we'll need to open it up later -QAK) */ - if(low) - *low = latest ? H5F_LIBVER_LATEST : H5F_LIBVER_EARLIEST; - if(high) - *high = H5F_LIBVER_LATEST; + if(high) { + if(H5P_get(plist, H5F_ACS_LIBVER_HIGH_BOUND_NAME, high) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get high bound for library format versions") + } done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_libver_bounds() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_elink_file_cache_size * @@ -2421,7 +2463,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_elink_file_cache_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_elink_file_cache_size * @@ -2460,7 +2502,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_elink_file_cache_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_file_image * @@ -2541,7 +2583,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_file_image() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_file_image * @@ -2630,7 +2672,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_file_image */ - + /*------------------------------------------------------------------------- * Function: H5Pset_file_image_callbacks * @@ -2707,7 +2749,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_file_image_callbacks() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_file_image_callbacks * @@ -2763,7 +2805,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_file_image_callbacks() */ - + /*------------------------------------------------------------------------- * Function: H5P__file_image_info_copy * @@ -2841,7 +2883,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__file_image_info_copy() */ - + /*------------------------------------------------------------------------- * Function: H5P__file_image_info_free * @@ -2896,7 +2938,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__file_image_info_free() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_image_config_cmp * @@ -2939,7 +2981,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_cache_image_config_cmp() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_image_config_enc * @@ -2985,7 +3027,7 @@ H5P__facc_cache_image_config_enc(const void *value, void **_pp, size_t *size, vo FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_cache_image_config_enc() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_image_config_dec * @@ -3037,7 +3079,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_cache_image_config_dec() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_set * @@ -3070,7 +3112,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_set() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_get * @@ -3103,7 +3145,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_get() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_del * @@ -3134,7 +3176,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_del() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_copy * @@ -3164,7 +3206,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_copy() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_cmp * @@ -3223,7 +3265,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_cmp() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_file_image_info_close * @@ -3253,7 +3295,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_file_image_info_close() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_config_cmp * @@ -3365,7 +3407,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_cache_config_cmp() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_config_enc * @@ -3510,7 +3552,7 @@ H5P__facc_cache_config_enc(const void *value, void **_pp, size_t *size, void H5_ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_cache_config_enc() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_cache_config_dec * @@ -3645,7 +3687,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P__facc_cache_config_dec() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_fclose_degree_enc * @@ -3683,7 +3725,7 @@ H5P__facc_fclose_degree_enc(const void *value, void **_pp, size_t *size, void H5 FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_fclose_degree_enc() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_fclose_degree_dec * @@ -3718,7 +3760,7 @@ H5P__facc_fclose_degree_dec(const void **_pp, void *_value) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_fclose_degree_dec() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_multi_type_enc * @@ -3756,7 +3798,7 @@ H5P__facc_multi_type_enc(const void *value, void **_pp, size_t *size, void H5_AT FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_multi_type_enc() */ - + /*------------------------------------------------------------------------- * Function: H5P__facc_multi_type_dec * @@ -3791,7 +3833,78 @@ H5P__facc_multi_type_dec(const void **_pp, void *_value) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__facc_multi_type_dec() */ - + +/*------------------------------------------------------------------------- + * Function: H5P__facc_libver_type_enc + * + * Purpose: Callback routine which is called whenever the 'low' or + * 'high' bound of library format versions property in the + * file access property list is encoded. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer + * + *------------------------------------------------------------------------- + */ +static herr_t +H5P__facc_libver_type_enc(const void *value, void **_pp, size_t *size) +{ + const H5F_libver_t *type = (const H5F_libver_t *)value; /* Create local alias for values */ + uint8_t **pp = (uint8_t **)_pp; + + FUNC_ENTER_STATIC_NOERR + + /* Sanity check */ + HDassert(type); + HDassert(size); + + /* Encode */ + if(NULL != *pp) + *(*pp)++ = (uint8_t)*type; + + /* Size */ + (*size)++; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5P__facc_libver_type_enc() */ + + +/*------------------------------------------------------------------------- + * Function: H5P__facc_libver_type_dec + * + * Purpose: Callback routine which is called whenever the 'low' or + * 'high' bound of library format versions property in the + * file access property list is decoded. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: + * + *------------------------------------------------------------------------- + */ +static herr_t +H5P__facc_libver_type_dec(const void **_pp, void *_value) +{ + H5F_libver_t *type = (H5F_libver_t *)_value; + const uint8_t **pp = (const uint8_t **)_pp; + + FUNC_ENTER_STATIC_NOERR + + /* Sanity checks */ + HDassert(pp); + HDassert(*pp); + HDassert(type); + + /* Decode */ + *type = (H5F_libver_t)*(*pp)++; + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5P__facc_libver_type_dec() */ + + /*------------------------------------------------------------------------- * Function: H5Pset_core_write_tracking * @@ -3832,7 +3945,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_core_write_tracking() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_core_write_tracking * @@ -3874,7 +3987,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_core_write_tracking() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_metadata_read_attempts * @@ -3917,7 +4030,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pset_metadata_read_attempts() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_metadata_read_attempts * @@ -3958,7 +4071,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_metadata_read_attempts() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_obj_flush_cb * @@ -4002,7 +4115,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pset_obj_flush_cb() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_obj_flush_cb * @@ -4043,7 +4156,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pget_obj_flush_cb() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_mdc_log_options * @@ -4095,7 +4208,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_mdc_log_options() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_mdc_log_options * @@ -4150,7 +4263,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_mdc_log_options() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_enc * @@ -4203,7 +4316,7 @@ H5P_facc_mdc_log_location_enc(const void *value, void **_pp, size_t *size, void FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P_facc_mdc_log_location_enc() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_dec * @@ -4257,7 +4370,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_facc_mdc_log_location_dec() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_del * @@ -4280,7 +4393,7 @@ H5P_facc_mdc_log_location_del(hid_t H5_ATTR_UNUSED prop_id, const char H5_ATTR_U FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P_facc_mdc_log_location_del() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_copy * @@ -4302,7 +4415,7 @@ H5P_facc_mdc_log_location_copy(const char H5_ATTR_UNUSED *name, size_t H5_ATTR_U FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P_facc_mdc_log_location_copy() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_cmp * @@ -4334,7 +4447,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_facc_mdc_log_location_cmp() */ - + /*------------------------------------------------------------------------- * Function: H5P_facc_mdc_log_location_close * @@ -4357,7 +4470,7 @@ H5P_facc_mdc_log_location_close(const char H5_ATTR_UNUSED *name, size_t H5_ATTR_ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P_facc_mdc_log_location_close() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_evict_on_close * @@ -4405,7 +4518,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_evict_on_close() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_evict_on_close * @@ -4449,7 +4562,7 @@ done: } /* end H5Pget_evict_on_close() */ #ifdef H5_HAVE_PARALLEL - + /*------------------------------------------------------------------------- * Function: H5P__encode_coll_md_read_flag_t * @@ -4487,7 +4600,7 @@ H5P__encode_coll_md_read_flag_t(const void *value, void **_pp, size_t *size, voi FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__encode_coll_md_read_flag_t() */ - + /*------------------------------------------------------------------------- * Function: H5P__decode_coll_md_read_flag_t * @@ -4521,7 +4634,7 @@ H5P__decode_coll_md_read_flag_t(const void **_pp, void *_value) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5P__decode_coll_md_read_flag_t() */ - + /*------------------------------------------------------------------------- * Function: H5Pset_all_coll_metadata_ops * @@ -4580,7 +4693,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_all_coll_metadata_ops() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_all_coll_metadata_ops * @@ -4638,7 +4751,7 @@ done: FUNC_LEAVE_API(ret_value) } /* H5Pget_all_coll_metadata_ops */ - + /*------------------------------------------------------------------------- * Function: H5Pset_coll_metadata_write * @@ -4677,7 +4790,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_coll_metadata_write() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_coll_metadata_write * @@ -4715,7 +4828,7 @@ done: } /* end H5Pget_coll_metadata_write() */ #endif /* H5_HAVE_PARALLEL */ - + /*------------------------------------------------------------------------- * Function: H5Pset_page_buffer_size * @@ -4763,7 +4876,7 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_page_buffer_size() */ - + /*------------------------------------------------------------------------- * Function: H5Pget_page_buffer_size * @@ -59,6 +59,7 @@ /* Local Variables */ /*******************/ + /*-------------------------------------------------------------------------- NAME H5Rcreate @@ -57,6 +57,12 @@ static htri_t H5S_is_simple(const H5S_t *sdim); /* Package initialization variable */ hbool_t H5_PKG_INIT_VAR = FALSE; +/* Format version bounds for dataspace */ +const unsigned H5O_sdspace_ver_bounds[] = { + H5O_SDSPACE_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_SDSPACE_VERSION_2, /* H5F_LIBVER_V18 */ + H5O_SDSPACE_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /*****************************/ /* Library Private Variables */ @@ -84,6 +90,7 @@ static const H5I_class_t H5I_DATASPACE_CLS[1] = {{ (H5I_free_t)H5S_close /* Callback routine for closing objects of this class */ }}; + /* Flag indicating "top" of interface has been initialized */ static hbool_t H5S_top_package_initialize_s = FALSE; @@ -1723,8 +1730,8 @@ H5S_decode(const unsigned char **p) /* Decode the extent part of dataspace */ /* (pass mostly bogus file pointer and bogus DXPL) */ - if((extent = (H5S_extent_t *)H5O_msg_decode(f, H5P_DEFAULT, NULL, H5O_SDSPACE_ID, pp))==NULL) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, NULL, "can't decode object") + if((extent = (H5S_extent_t *)H5O_msg_decode(f, H5P_DEFAULT, NULL, H5O_SDSPACE_ID, extent_size, pp)) == NULL) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDECODE, NULL, "can't decode object") pp += extent_size; /* Copy the extent into dataspace structure */ @@ -2167,30 +2174,42 @@ H5S_extent_nelem(const H5S_extent_t *ext) /*------------------------------------------------------------------------- - * Function: H5S_set_latest_version + * Function: H5S_set_version * - * Purpose: Set the encoding for a dataspace to the latest version. + * Purpose: Set the version to encode a dataspace with. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, July 24, 2007 + * Programmer: Vailin Choi; December 2017 * *------------------------------------------------------------------------- */ herr_t -H5S_set_latest_version(H5S_t *ds) +H5S_set_version(H5F_t *f, H5S_t *ds) { - FUNC_ENTER_NOAPI_NOINIT_NOERR + unsigned version; /* Message version */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ + HDassert(f); HDassert(ds); - /* Set encoding of extent to latest version */ - ds->extent.version = H5O_SDSPACE_VERSION_LATEST; + /* Upgrade to the version indicated by the file's low bound if higher */ + version = MAX(ds->extent.version, H5O_sdspace_ver_bounds[H5F_LOW_BOUND(f)]); + + /* Version bounds check */ + if(version > H5O_sdspace_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_DATASET, H5E_BADRANGE, FAIL, "Dataspace version out of bounds") + + /* Set the message version */ + ds->extent.version = version; + +done: + FUNC_LEAVE_NOAPI(ret_value) - FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5S_set_latest_version() */ +} /* end H5S_set_version() */ #ifndef H5_NO_DEPRECATED_SYMBOLS @@ -70,7 +70,7 @@ static herr_t H5SM_write_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, static herr_t H5SM_decr_ref(void *record, void *op_data, hbool_t *changed); static herr_t H5SM_delete_from_index(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5SM_index_header_t *header, const H5O_shared_t * mesg, - unsigned *cache_flags, void ** /*out*/ encoded_mesg); + unsigned *cache_flags, size_t * /*out*/ mesg_size, void ** /*out*/ encoded_mesg); static herr_t H5SM_type_to_flag(unsigned type_id, unsigned *type_flag); static herr_t H5SM_read_iter_op(H5O_t *oh, H5O_mesg_t *mesg, unsigned sequence, unsigned *oh_modified, void *_udata); @@ -1549,6 +1549,7 @@ H5SM_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5O_shared_t *sh_mesg) unsigned cache_flags = H5AC__NO_FLAGS_SET; H5SM_table_cache_ud_t cache_udata; /* User-data for callback */ ssize_t index_num; + size_t mesg_size = 0; void *mesg_buf = NULL; void *native_mesg = NULL; unsigned type_id; /* Message type ID to operate on */ @@ -1578,8 +1579,8 @@ H5SM_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5O_shared_t *sh_mesg) * zero and any file space it uses needs to be freed. mesg_buf holds the * serialized form of the message. */ - if(H5SM_delete_from_index(f, dxpl_id, open_oh, &(table->indexes[index_num]), sh_mesg, &cache_flags, &mesg_buf) < 0) - HGOTO_ERROR(H5E_SOHM, H5E_CANTDELETE, FAIL, "unable to delete mesage from SOHM index") + if(H5SM_delete_from_index(f, dxpl_id, open_oh, &(table->indexes[index_num]), sh_mesg, &cache_flags, &mesg_size, &mesg_buf) < 0) + HGOTO_ERROR(H5E_SOHM, H5E_CANTDELETE, FAIL, "unable to delete mesage from SOHM index") /* Release the master SOHM table */ if(H5AC_unprotect(f, dxpl_id, H5AC_SOHM_TABLE, H5F_SOHM_ADDR(f), table, cache_flags) < 0) @@ -1591,7 +1592,7 @@ H5SM_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5O_shared_t *sh_mesg) * master table needs to be unprotected when we do this. */ if(mesg_buf) { - if(NULL == (native_mesg = H5O_msg_decode(f, dxpl_id, open_oh, type_id, (const unsigned char *)mesg_buf))) + if(NULL == (native_mesg = H5O_msg_decode(f, dxpl_id, open_oh, type_id, mesg_size, (const unsigned char *)mesg_buf))) HGOTO_ERROR(H5E_SOHM, H5E_CANTDECODE, FAIL, "can't decode shared message.") if(H5O_msg_delete(f, dxpl_id, open_oh, type_id, native_mesg) < 0) @@ -1778,7 +1779,7 @@ H5SM_decr_ref(void *record, void *op_data, hbool_t *changed) static herr_t H5SM_delete_from_index(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5SM_index_header_t *header, const H5O_shared_t *mesg, - unsigned *cache_flags, void ** /*out*/ encoded_mesg) + unsigned *cache_flags, size_t * /*out*/ mesg_size, void ** /*out*/ encoded_mesg) { H5SM_list_t *list = NULL; H5SM_mesg_key_t key; @@ -1910,6 +1911,7 @@ H5SM_delete_from_index(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, /* Return the message's encoding so anything it references can be freed */ *encoded_mesg = encoding_buf; + *mesg_size = buf_size; /* If there are no messages left in the index, delete it */ if(header->num_messages == 0) { @@ -1951,8 +1953,10 @@ done: /* Free the message encoding, if we're not returning it in encoded_mesg * or if there's been an error. */ - if(encoding_buf && (NULL == *encoded_mesg || ret_value < 0)) + if(encoding_buf && (NULL == *encoded_mesg || ret_value < 0)) { encoding_buf = H5MM_xfree(encoding_buf); + *mesg_size = 0; + } FUNC_LEAVE_NOAPI_TAG(ret_value, FAIL) } /* end H5SM_delete_from_index() */ diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 71bfa51..94b600d 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -28,6 +28,13 @@ #include "H5Spkg.h" /* Dataspace functions */ #include "H5VMprivate.h" /* Vector functions */ +/* Format version bounds for dataspace hyperslab selection */ +const unsigned H5O_sds_hyper_ver_bounds[] = { + H5S_HYPER_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5S_HYPER_VERSION_1, /* H5F_LIBVER_V18 */ + H5S_HYPER_VERSION_2 /* H5F_LIBVER_LATEST */ +}; + /* Local datatypes */ /* Static function prototypes */ @@ -1993,6 +2000,7 @@ done: H5S_hyper_set_version PURPOSE Determine the version to use for encoding hyperslab selection info + See tables 2 & 3 in the RFC: H5Sencode/H5Sdecode Format Change USAGE hssize_t H5S_hyper_set_version(space, block_count, bounds_end, f, version) const H5S_t *space: IN: The dataspace @@ -2014,21 +2022,14 @@ done: static herr_t H5S_hyper_set_version(const H5S_t *space, hsize_t block_count, hsize_t bounds_end[], H5F_t *f, uint32_t *version) { - hbool_t count_up_version = FALSE; - hbool_t bound_up_version = FALSE; - unsigned u; - herr_t ret_value = SUCCEED; /* return value */ + hbool_t count_up_version = FALSE; /* Whether number of blocks exceed (2^32 - 1) */ + hbool_t bound_up_version = FALSE; /* Whether high bounds exceed (2^32 - 1) */ + unsigned u; /* Local index veriable */ + uint32_t tmp_version; /* Temporay version */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_NOAPI_NOINIT - /* Use version 2 for unlimited selection */ - if(space->select.sel_info.hslab->unlim_dim >= 0) { - *version = H5S_HYPER_VERSION_2; - HGOTO_DONE(SUCCEED) - } - - *version = H5S_HYPER_VERSION_1; - /* Determine whether the number of blocks or the high bounds in the selection exceed (2^32 - 1) */ if(block_count > H5S_UINT32_MAX) count_up_version = TRUE; @@ -2038,17 +2039,34 @@ H5S_hyper_set_version(const H5S_t *space, hsize_t block_count, hsize_t bounds_en bound_up_version = TRUE; } - if(H5S_hyper_is_regular(space)) { - if((H5F_USE_LATEST_FLAGS(f, H5F_LATEST_DATASPACE_SELECTION) && block_count > 4) || - count_up_version || bound_up_version) - *version = H5S_HYPER_VERSION_2; - } else { /* Fail for irregular hyperslab if exceeds 32 bits */ + /* Use version 2 for unlimited selection */ + if(space->select.sel_info.hslab->unlim_dim >= 0) + tmp_version = H5S_HYPER_VERSION_2; + else if(H5S_hyper_is_regular(space)) { + + /* If exceed (2^32 -1) */ + if(count_up_version || bound_up_version) + tmp_version = H5S_HYPER_VERSION_2; + else + /* block_count < 4: version 1 */ + /* block_count >= 4: determined by low bound */ + tmp_version = (block_count < 4) ? H5S_HYPER_VERSION_1 : H5O_sds_hyper_ver_bounds[H5F_LOW_BOUND(f)]; + + } else { + /* Fail for irregular hyperslab if exceeds 32 bits */ if(count_up_version) HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The number of blocks in hyperslab selection exceeds 2^32") else if(bound_up_version) HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "The end of bounding box in hyperslab selection exceeds 2^32") + tmp_version = H5S_HYPER_VERSION_1; } + /* Version bounds check */ + if(tmp_version > H5O_sds_hyper_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "Dataspace hyperslab selection version out of bounds") + + *version = tmp_version; + done: FUNC_LEAVE_NOAPI(ret_value) } /* H5S_hyper_set_version() */ diff --git a/src/H5Spkg.h b/src/H5Spkg.h index eb52c3d..75c5e77 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -282,6 +282,10 @@ H5_DLLVAR const H5S_select_class_t H5S_sel_none[1]; */ H5_DLLVAR const H5S_select_class_t H5S_sel_point[1]; +/* Array of versions for Dataspace and hyperslab selections */ +H5_DLLVAR const unsigned H5O_sdspace_ver_bounds[H5F_LIBVER_NBOUNDS]; +H5_DLLVAR const unsigned H5O_sds_hyper_ver_bounds[H5F_LIBVER_NBOUNDS]; + /* Extent functions */ H5_DLL herr_t H5S_extent_release(H5S_extent_t *extent); H5_DLL herr_t H5S_extent_copy_real(H5S_extent_t *dst, const H5S_extent_t *src, diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index 009d877..e8a42e8 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -219,7 +219,7 @@ H5_DLL herr_t H5S_set_extent_simple(H5S_t *space, unsigned rank, H5_DLL H5S_t *H5S_create(H5S_class_t type); H5_DLL H5S_t *H5S_create_simple(unsigned rank, const hsize_t dims[/*rank*/], const hsize_t maxdims[/*rank*/]); -H5_DLL herr_t H5S_set_latest_version(H5S_t *ds); +H5_DLL herr_t H5S_set_version(H5F_t *f, H5S_t *ds); H5_DLL herr_t H5S_encode(H5S_t *obj, unsigned char **p, size_t *nalloc, hid_t fapl_id); H5_DLL H5S_t *H5S_decode(const unsigned char **p); H5_DLL herr_t H5S_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream, @@ -510,6 +510,12 @@ double H5T_NATIVE_DOUBLE_NEG_INF_g = (double)0.0f; H5FL_DEFINE(H5T_t); H5FL_DEFINE(H5T_shared_t); +/* Format version bounds for datatype */ +const unsigned H5O_dtype_ver_bounds[] = { + H5O_DTYPE_VERSION_1, /* H5F_LIBVER_EARLIEST */ + H5O_DTYPE_VERSION_3, /* H5F_LIBVER_V18 */ + H5O_DTYPE_VERSION_LATEST /* H5F_LIBVER_LATEST */ +}; /*******************/ /* Local Variables */ @@ -539,6 +545,7 @@ static const H5I_class_t H5I_DATATYPE_CLS[1] = {{ (H5I_free_t)H5T_close /* Callback routine for closing objects of this class */ }}; + /* Flag indicating "top" of interface has been initialized */ static hbool_t H5T_top_package_initialize_s = FALSE; @@ -2815,8 +2822,13 @@ H5Tdecode(const void *buf) if(buf == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "empty buffer") - /* Create datatype by decoding buffer */ - if(NULL == (dt = H5T_decode((const unsigned char *)buf))) + /* Create datatype by decoding buffer + * There is no way to get the size of the buffer, so we pass in + * SIZE_MAX and assume the caller knows what they are doing. + * Really fixing this will require an H5Tdecode2() call that + * takes a size parameter. + */ + if(NULL == (dt = H5T_decode(SIZE_MAX, (const unsigned char *)buf))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTDECODE, FAIL, "can't decode object") /* Register the type and return the ID */ @@ -2905,7 +2917,7 @@ done: *------------------------------------------------------------------------- */ H5T_t * -H5T_decode(const unsigned char *buf) +H5T_decode(size_t buf_size, const unsigned char *buf) { H5F_t *f = NULL; /* Fake file structure*/ H5T_t *ret_value = NULL; /* Return value */ @@ -2925,7 +2937,7 @@ H5T_decode(const unsigned char *buf) HGOTO_ERROR(H5E_DATATYPE, H5E_VERSION, NULL, "unknown version of encoded datatype") /* Decode the serialized datatype message */ - if(NULL == (ret_value = (H5T_t *)H5O_msg_decode(f, H5AC_noio_dxpl_id, NULL, H5O_DTYPE_ID, buf))) + if(NULL == (ret_value = (H5T_t *)H5O_msg_decode(f, H5AC_noio_dxpl_id, NULL, H5O_DTYPE_ID, buf_size, buf))) HGOTO_ERROR(H5E_DATATYPE, H5E_CANTDECODE, NULL, "can't decode object") /* Mark datatype as being in memory now */ @@ -5204,6 +5216,11 @@ H5T_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc) /* Check if the field changed size */ if(old_size != memb_type->shared->size) { + + /* Fail if the old_size is zero */ + if (0 == old_size) + HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, FAIL, "old_size of zero would cause division by zero"); + /* Adjust the size of the member */ dt->shared->u.compnd.memb[i].size = (dt->shared->u.compnd.memb[i].size*memb_type->shared->size)/old_size; @@ -5403,34 +5420,44 @@ done: /*------------------------------------------------------------------------- - * Function: H5T_set_latest_version + * Function: H5T_set_version * - * Purpose: Set the encoding for a datatype to the latest version. + * Purpose: Set the encoding for a datatype to the version indicated by + * the file's low bound if that is higher than the datatype's + * version. * * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, July 19, 2007 + * Programmer: Vailin Choi; December 2017 * *------------------------------------------------------------------------- */ herr_t -H5T_set_latest_version(H5T_t *dt) +H5T_set_version(H5F_t *f, H5T_t *dt) { - herr_t ret_value = SUCCEED; /* Return value */ + unsigned vers; /* The version */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Sanity check */ + HDassert(f); HDassert(dt); - /* Upgrade the format version for the datatype to the latest */ - if(H5T__upgrade_version(dt, H5O_DTYPE_VERSION_LATEST) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't upgrade datatype encoding") + vers = H5O_dtype_ver_bounds[H5F_LOW_BOUND(f)]; + if(vers > dt->shared->version) { + /* Upgrade the format version for the datatype */ + if(H5T__upgrade_version(dt, vers) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "can't upgrade datatype encoding") + } + + /* Version bounds check */ + if(dt->shared->version > H5O_dtype_ver_bounds[H5F_HIGH_BOUND(f)]) + HGOTO_ERROR(H5E_DATATYPE, H5E_BADRANGE, FAIL, "Datatype version out of bounds") done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5T_set_latest_version() */ +} /* end H5T_set_version() */ /*------------------------------------------------------------------------- diff --git a/src/H5Tcommit.c b/src/H5Tcommit.c index 30fbeeb..cd0597c 100644 --- a/src/H5Tcommit.c +++ b/src/H5Tcommit.c @@ -328,9 +328,9 @@ H5T__commit(H5F_t *file, H5T_t *type, hid_t tcpl_id, hid_t dxpl_id) * a named type should always succeed. */ if(H5T_STATE_NAMED == type->shared->state || H5T_STATE_OPEN == type->shared->state) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "datatype is already committed") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "datatype is already committed") if(H5T_STATE_IMMUTABLE == type->shared->state) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "datatype is immutable") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "datatype is immutable") /* Check for a "sensible" datatype to store on disk */ if(H5T_is_sensible(type) <= 0) @@ -344,15 +344,14 @@ H5T__commit(H5F_t *file, H5T_t *type, hid_t tcpl_id, hid_t dxpl_id) /* Reset datatype location and path */ if(H5O_loc_reset(&temp_oloc) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTRESET, FAIL, "unable to initialize location") + HGOTO_ERROR(H5E_SYM, H5E_CANTRESET, FAIL, "unable to initialize location") if(H5G_name_reset(&temp_path) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTRESET, FAIL, "unable to initialize path") + HGOTO_ERROR(H5E_SYM, H5E_CANTRESET, FAIL, "unable to initialize path") loc_init = TRUE; - /* Set the latest format, if requested */ - if(H5F_USE_LATEST_FLAGS(file, H5F_LATEST_DATATYPE)) - if(H5T_set_latest_version(type) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set latest version of datatype") + /* Set the version for datatype */ + if(H5T_set_version(file, type) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set version of datatype") /* Calculate message size infomation, for creating object header */ dtype_size = H5O_msg_size_f(file, tcpl_id, H5O_DTYPE_ID, type, (size_t)0); @@ -363,15 +362,15 @@ H5T__commit(H5F_t *file, H5T_t *type, hid_t tcpl_id, hid_t dxpl_id) * type message and then give the object header a name. */ if(H5O_create(file, dxpl_id, dtype_size, (size_t)1, tcpl_id, &temp_oloc) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to create datatype object header") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to create datatype object header") if(H5O_msg_create(&temp_oloc, H5O_DTYPE_ID, H5O_MSG_FLAG_CONSTANT | H5O_MSG_FLAG_DONTSHARE, H5O_UPDATE_TIME, type, dxpl_id) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to update type header message") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to update type header message") /* Copy the new object header's location into the datatype, taking ownership of it */ if(H5O_loc_copy(&(type->oloc), &temp_oloc, H5_COPY_SHALLOW) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy datatype location") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy datatype location") if(H5G_name_copy(&(type->path), &temp_path, H5_COPY_SHALLOW) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy datatype location") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to copy datatype location") loc_init = FALSE; /* Set the shared info fields */ @@ -400,12 +399,12 @@ done: if((type->shared->state == H5T_STATE_TRANSIENT || type->shared->state == H5T_STATE_RDONLY) && (type->sh_loc.type == H5O_SHARE_TYPE_COMMITTED)) { if(H5O_dec_rc_by_loc(&(type->oloc), dxpl_id) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CANTDEC, FAIL, "unable to decrement refcount on newly created object") - if(H5O_close(&(type->oloc), NULL) < 0) + if(H5O_close(&(type->oloc), NULL) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CLOSEERROR, FAIL, "unable to release object header") if(H5O_delete(file, dxpl_id, type->sh_loc.u.loc.oh_addr) < 0) HDONE_ERROR(H5E_DATATYPE, H5E_CANTDELETE, FAIL, "unable to delete object header") - type->sh_loc.type = H5O_SHARE_TYPE_UNSHARED; - } /* end if */ + type->sh_loc.type = H5O_SHARE_TYPE_UNSHARED; + } /* end if */ } /* end if */ FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h index d075127..f05c021 100644 --- a/src/H5Tpkg.h +++ b/src/H5Tpkg.h @@ -332,6 +332,9 @@ typedef struct { /* Typedef for datatype iteration operations */ typedef herr_t (*H5T_operator_t)(H5T_t *dt, void *op_data/*in,out*/); +/* Array of versions for Datatype */ +H5_DLLVAR const unsigned H5O_dtype_ver_bounds[H5F_LIBVER_NBOUNDS]; + /* * Alignment information for native types. A value of N indicates that the * data must be aligned on an address ADDR such that 0 == ADDR mod N. When diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index 9171e1e..61e7c79 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -114,7 +114,7 @@ H5_DLL htri_t H5T_detect_class(const H5T_t *dt, H5T_class_t cls, hbool_t from_ap H5_DLL size_t H5T_get_size(const H5T_t *dt); H5_DLL int H5T_cmp(const H5T_t *dt1, const H5T_t *dt2, hbool_t superset); H5_DLL herr_t H5T_encode(H5T_t *obj, unsigned char *buf, size_t *nalloc); -H5_DLL H5T_t *H5T_decode(const unsigned char *buf); +H5_DLL H5T_t *H5T_decode(size_t buf_size, const unsigned char *buf); H5_DLL herr_t H5T_debug(const H5T_t *dt, FILE * stream); H5_DLL struct H5O_loc_t *H5T_oloc(H5T_t *dt); H5_DLL H5G_name_t *H5T_nameof(H5T_t *dt); @@ -136,7 +136,7 @@ H5_DLL herr_t H5T_vlen_get_alloc_info(hid_t dxpl_id, H5T_vlen_alloc_info_t **vl_ H5_DLL htri_t H5T_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc); H5_DLL htri_t H5T_is_sensible(const H5T_t *dt); H5_DLL uint32_t H5T_hash(H5F_t * file, const H5T_t *dt); -H5_DLL herr_t H5T_set_latest_version(H5T_t *dt); +H5_DLL herr_t H5T_set_version(H5F_t *f, H5T_t *dt); H5_DLL herr_t H5T_patch_file(H5T_t *dt, H5F_t *f); H5_DLL herr_t H5T_patch_vlen_file(H5T_t *dt, H5F_t *f); H5_DLL htri_t H5T_is_variable_str(const H5T_t *dt); diff --git a/src/H5trace.c b/src/H5trace.c index 7bc2724..32e05a7 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -174,26 +174,26 @@ H5_trace(const double *returning, const char *func, const char *type, ...) if(H5_debug_g.ttimes) { char tmp[128]; - sprintf(tmp, "%.6f", event_time.etime-first_time.etime); - fprintf(out, " %*s ", (int)HDstrlen(tmp), ""); + HDsprintf(tmp, "%.6f", event_time.etime-first_time.etime); + HDfprintf(out, " %*s ", (int)HDstrlen(tmp), ""); } /* end if */ for(i = 0; i < current_depth; i++) HDfputc('+', out); - fprintf(out, "%*s%s = ", 2*current_depth, "", func); + HDfprintf(out, "%*s%s = ", 2*current_depth, "", func); } /* end if */ else { /* Continue current line with return value */ - fprintf(out, " = "); + HDfprintf(out, " = "); } /* end else */ } /* end if */ else { if(current_depth>last_call_depth) HDfputs(" = <delayed>\n", out); if(H5_debug_g.ttimes) - fprintf(out, "@%.6f ", event_time.etime - first_time.etime); + HDfprintf(out, "@%.6f ", event_time.etime - first_time.etime); for(i = 0; i < current_depth; i++) HDfputc('+', out); - fprintf(out, "%*s%s(", 2*current_depth, "", func); + HDfprintf(out, "%*s%s(", 2*current_depth, "", func); } /* end else */ /* Clear array sizes */ @@ -235,7 +235,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) buf[MIN((int)sizeof(buf) - 1, n)] = '\0'; argname = buf; } /* end if */ - fprintf(out, "%s%s=", argno?", ":"", argname); + HDfprintf(out, "%s%s=", argno?", ":"", argname); } /* end if */ else argname = ""; @@ -247,9 +247,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'a': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { haddr_t addr = va_arg(ap, haddr_t); @@ -261,33 +261,33 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'b': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { /* Can't pass hbool_t to va_arg() */ hbool_t bool_var = (hbool_t)va_arg(ap, int); if(TRUE == bool_var) - fprintf(out, "TRUE"); + HDfprintf(out, "TRUE"); else if(!bool_var) - fprintf(out, "FALSE"); + HDfprintf(out, "FALSE"); else - fprintf(out, "TRUE(%u)", (unsigned)bool_var); + HDfprintf(out, "TRUE(%u)", (unsigned)bool_var); } break; case 'd': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { double dbl = va_arg(ap, double); - fprintf(out, "%g", dbl); + HDfprintf(out, "%g", dbl); } /* end else */ break; @@ -296,36 +296,36 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'a': if(ptr) { if(vp) - fprintf (out, "0x%lx", (unsigned long)vp); + HDfprintf (out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_alloc_time_t alloc_time = (H5D_alloc_time_t)va_arg(ap, int); switch(alloc_time) { case H5D_ALLOC_TIME_ERROR: - fprintf(out, "H5D_ALLOC_TIME_ERROR"); + HDfprintf(out, "H5D_ALLOC_TIME_ERROR"); break; case H5D_ALLOC_TIME_DEFAULT: - fprintf(out, "H5D_ALLOC_TIME_DEFAULT"); + HDfprintf(out, "H5D_ALLOC_TIME_DEFAULT"); break; case H5D_ALLOC_TIME_EARLY: - fprintf(out, "H5D_ALLOC_TIME_EARLY"); + HDfprintf(out, "H5D_ALLOC_TIME_EARLY"); break; case H5D_ALLOC_TIME_LATE: - fprintf(out, "H5D_ALLOC_TIME_LATE"); + HDfprintf(out, "H5D_ALLOC_TIME_LATE"); break; case H5D_ALLOC_TIME_INCR: - fprintf(out, "H5D_ALLOC_TIME_INCR"); + HDfprintf(out, "H5D_ALLOC_TIME_INCR"); break; default: - fprintf(out, "%ld", (long)alloc_time); + HDfprintf(out, "%ld", (long)alloc_time); break; } /* end switch */ } /* end else */ @@ -334,24 +334,24 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5FD_mpio_collective_opt_t opt = (H5FD_mpio_collective_opt_t)va_arg(ap, int); switch(opt) { case H5FD_MPIO_COLLECTIVE_IO: - fprintf(out, "H5FD_MPIO_COLLECTIVE_IO"); + HDfprintf(out, "H5FD_MPIO_COLLECTIVE_IO"); break; case H5FD_MPIO_INDIVIDUAL_IO: - fprintf(out, "H5FD_MPIO_INDIVIDUAL_IO"); + HDfprintf(out, "H5FD_MPIO_INDIVIDUAL_IO"); break; default: - fprintf(out, "%ld", (long)opt); + HDfprintf(out, "%ld", (long)opt); break; } /* end switch */ } /* end else */ @@ -360,32 +360,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'f': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_fill_time_t fill_time = (H5D_fill_time_t)va_arg(ap, int); switch(fill_time) { case H5D_FILL_TIME_ERROR: - fprintf(out, "H5D_FILL_TIME_ERROR"); + HDfprintf(out, "H5D_FILL_TIME_ERROR"); break; case H5D_FILL_TIME_ALLOC: - fprintf(out, "H5D_FILL_TIME_ALLOC"); + HDfprintf(out, "H5D_FILL_TIME_ALLOC"); break; case H5D_FILL_TIME_NEVER: - fprintf(out, "H5D_FILL_TIME_NEVER"); + HDfprintf(out, "H5D_FILL_TIME_NEVER"); break; case H5D_FILL_TIME_IFSET: - fprintf(out, "H5D_FILL_TIME_IFSET"); + HDfprintf(out, "H5D_FILL_TIME_IFSET"); break; default: - fprintf(out, "%ld", (long)fill_time); + HDfprintf(out, "%ld", (long)fill_time); break; } /* end switch */ } /* end else */ @@ -394,32 +394,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'F': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_fill_value_t fill_value = (H5D_fill_value_t)va_arg(ap, int); switch(fill_value) { case H5D_FILL_VALUE_ERROR: - fprintf(out, "H5D_FILL_VALUE_ERROR"); + HDfprintf(out, "H5D_FILL_VALUE_ERROR"); break; case H5D_FILL_VALUE_UNDEFINED: - fprintf(out, "H5D_FILL_VALUE_UNDEFINED"); + HDfprintf(out, "H5D_FILL_VALUE_UNDEFINED"); break; case H5D_FILL_VALUE_DEFAULT: - fprintf(out, "H5D_FILL_VALUE_DEFAULT"); + HDfprintf(out, "H5D_FILL_VALUE_DEFAULT"); break; case H5D_FILL_VALUE_USER_DEFINED: - fprintf(out, "H5D_FILL_VALUE_USER_DEFINED"); + HDfprintf(out, "H5D_FILL_VALUE_USER_DEFINED"); break; default: - fprintf(out, "%ld", (long)fill_value); + HDfprintf(out, "%ld", (long)fill_value); break; } /* end switch */ } /* end else */ @@ -428,28 +428,28 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'h': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5FD_mpio_chunk_opt_t opt = (H5FD_mpio_chunk_opt_t)va_arg(ap, int); switch(opt) { case H5FD_MPIO_CHUNK_DEFAULT: - fprintf(out, "H5FD_MPIO_CHUNK_DEFAULT"); + HDfprintf(out, "H5FD_MPIO_CHUNK_DEFAULT"); break; case H5FD_MPIO_CHUNK_ONE_IO: - fprintf(out, "H5FD_MPIO_CHUNK_ONE_IO"); + HDfprintf(out, "H5FD_MPIO_CHUNK_ONE_IO"); break; case H5FD_MPIO_CHUNK_MULTI_IO: - fprintf(out, "H5FD_MPIO_CHUNK_MULTI_IO"); + HDfprintf(out, "H5FD_MPIO_CHUNK_MULTI_IO"); break; default: - fprintf(out, "%ld", (long)opt); + HDfprintf(out, "%ld", (long)opt); break; } /* end switch */ } /* end else */ @@ -458,36 +458,36 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'i': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_mpio_actual_io_mode_t actual_io_mode = (H5D_mpio_actual_io_mode_t)va_arg(ap, int); switch(actual_io_mode) { case H5D_MPIO_NO_COLLECTIVE: - fprintf(out, "H5D_MPIO_NO_COLLECTIVE"); + HDfprintf(out, "H5D_MPIO_NO_COLLECTIVE"); break; case H5D_MPIO_CHUNK_INDEPENDENT: - fprintf(out, "H5D_MPIO_CHUNK_INDEPENDENT"); + HDfprintf(out, "H5D_MPIO_CHUNK_INDEPENDENT"); break; case H5D_MPIO_CHUNK_COLLECTIVE: - fprintf(out, "H5D_MPIO_CHUNK_COLLECTIVE"); + HDfprintf(out, "H5D_MPIO_CHUNK_COLLECTIVE"); break; case H5D_MPIO_CHUNK_MIXED: - fprintf(out, "H5D_MPIO_CHUNK_MIXED"); + HDfprintf(out, "H5D_MPIO_CHUNK_MIXED"); break; case H5D_MPIO_CONTIGUOUS_COLLECTIVE: - fprintf(out, "H5D_MPIO_CONTIGUOUS_COLLECTIVE"); + HDfprintf(out, "H5D_MPIO_CONTIGUOUS_COLLECTIVE"); break; default: - fprintf(out, "%ld", (long)actual_io_mode); + HDfprintf(out, "%ld", (long)actual_io_mode); break; } /* end switch */ } /* end else */ @@ -496,44 +496,44 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'k': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_chunk_index_t idx = (H5D_chunk_index_t)va_arg(ap, int); switch(idx) { case H5D_CHUNK_IDX_BTREE: - fprintf(out, "H5D_CHUNK_IDX_BTREE"); + HDfprintf(out, "H5D_CHUNK_IDX_BTREE"); break; case H5D_CHUNK_IDX_NONE: - fprintf(out, "H5D_CHUNK_IDX_NONE"); + HDfprintf(out, "H5D_CHUNK_IDX_NONE"); break; case H5D_CHUNK_IDX_FARRAY: - fprintf(out, "H5D_CHUNK_IDX_FARRAY"); + HDfprintf(out, "H5D_CHUNK_IDX_FARRAY"); break; case H5D_CHUNK_IDX_EARRAY: - fprintf(out, "H5D_CHUNK_IDX_EARRAY"); + HDfprintf(out, "H5D_CHUNK_IDX_EARRAY"); break; case H5D_CHUNK_IDX_BT2: - fprintf(out, "H5D_CHUNK_IDX_BT2"); + HDfprintf(out, "H5D_CHUNK_IDX_BT2"); break; case H5D_CHUNK_IDX_SINGLE: - fprintf(out, "H5D_CHUNK_IDX_SINGLE"); + HDfprintf(out, "H5D_CHUNK_IDX_SINGLE"); break; case H5D_CHUNK_IDX_NTYPES: - fprintf(out, "ERROR: H5D_CHUNK_IDX_NTYPES (invalid value)"); + HDfprintf(out, "ERROR: H5D_CHUNK_IDX_NTYPES (invalid value)"); break; default: - fprintf(out, "UNKNOWN VALUE: %ld", (long)idx); + HDfprintf(out, "UNKNOWN VALUE: %ld", (long)idx); break; } /* end switch */ } /* end else */ @@ -542,40 +542,40 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'l': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_layout_t layout = (H5D_layout_t)va_arg(ap, int); switch(layout) { case H5D_LAYOUT_ERROR: - fprintf(out, "H5D_LAYOUT_ERROR"); + HDfprintf(out, "H5D_LAYOUT_ERROR"); break; case H5D_COMPACT: - fprintf(out, "H5D_COMPACT"); + HDfprintf(out, "H5D_COMPACT"); break; case H5D_CONTIGUOUS: - fprintf(out, "H5D_CONTIGUOUS"); + HDfprintf(out, "H5D_CONTIGUOUS"); break; case H5D_CHUNKED: - fprintf(out, "H5D_CHUNKED"); + HDfprintf(out, "H5D_CHUNKED"); break; case H5D_VIRTUAL: - fprintf(out, "H5D_VIRTUAL"); + HDfprintf(out, "H5D_VIRTUAL"); break; case H5D_NLAYOUTS: - fprintf(out, "H5D_NLAYOUTS"); + HDfprintf(out, "H5D_NLAYOUTS"); break; default: - fprintf(out, "%ld", (long)layout); + HDfprintf(out, "%ld", (long)layout); break; } /* end switch */ } /* end else */ @@ -584,9 +584,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'n': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_mpio_no_collective_cause_t nocol_cause_mode = (H5D_mpio_no_collective_cause_t)va_arg(ap, int); @@ -594,65 +594,65 @@ H5_trace(const double *returning, const char *func, const char *type, ...) /* Check for all bit-flags which might be set */ if(nocol_cause_mode & H5D_MPIO_COLLECTIVE) { - fprintf(out, "H5D_MPIO_COLLECTIVE"); + HDfprintf(out, "H5D_MPIO_COLLECTIVE"); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_SET_INDEPENDENT) { - fprintf(out, "%sH5D_MPIO_SET_INDEPENDENT", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_SET_INDEPENDENT", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_DATATYPE_CONVERSION) { - fprintf(out, "%sH5D_MPIO_DATATYPE_CONVERSION", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_DATATYPE_CONVERSION", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_DATA_TRANSFORMS) { - fprintf(out, "%sH5D_MPIO_DATA_TRANSFORMS", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_DATA_TRANSFORMS", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED) { - fprintf(out, "%sH5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES) { - fprintf(out, "%sH5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ if(nocol_cause_mode & H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET) { - fprintf(out, "%sH5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET", flag_already_displayed ? " | " : ""); + HDfprintf(out, "%sH5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET", flag_already_displayed ? " | " : ""); flag_already_displayed = TRUE; } /* end if */ /* Display '<none>' if there's no flags set */ if(!flag_already_displayed) - fprintf(out, "<none>"); + HDfprintf(out, "<none>"); } /* end else */ break; case 'o': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_mpio_actual_chunk_opt_mode_t chunk_opt_mode = (H5D_mpio_actual_chunk_opt_mode_t)va_arg(ap, int); switch(chunk_opt_mode) { case H5D_MPIO_NO_CHUNK_OPTIMIZATION: - fprintf(out, "H5D_MPIO_NO_CHUNK_OPTIMIZATION"); + HDfprintf(out, "H5D_MPIO_NO_CHUNK_OPTIMIZATION"); break; case H5D_MPIO_LINK_CHUNK: - fprintf(out, "H5D_MPIO_LINK_CHUNK"); + HDfprintf(out, "H5D_MPIO_LINK_CHUNK"); break; case H5D_MPIO_MULTI_CHUNK: - fprintf(out, "H5D_MPIO_MULTI_CHUNK"); + HDfprintf(out, "H5D_MPIO_MULTI_CHUNK"); break; default: - fprintf(out, "%ld", (long)chunk_opt_mode); + HDfprintf(out, "%ld", (long)chunk_opt_mode); break; } /* end switch */ } /* end else */ @@ -661,32 +661,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_space_status_t space_status = (H5D_space_status_t)va_arg(ap, int); switch(space_status) { case H5D_SPACE_STATUS_NOT_ALLOCATED: - fprintf(out, "H5D_SPACE_STATUS_NOT_ALLOCATED"); + HDfprintf(out, "H5D_SPACE_STATUS_NOT_ALLOCATED"); break; case H5D_SPACE_STATUS_PART_ALLOCATED: - fprintf(out, "H5D_SPACE_STATUS_PART_ALLOCATED"); + HDfprintf(out, "H5D_SPACE_STATUS_PART_ALLOCATED"); break; case H5D_SPACE_STATUS_ALLOCATED: - fprintf(out, "H5D_SPACE_STATUS_ALLOCATED"); + HDfprintf(out, "H5D_SPACE_STATUS_ALLOCATED"); break; case H5D_SPACE_STATUS_ERROR: - fprintf(out, "H5D_SPACE_STATUS_ERROR"); + HDfprintf(out, "H5D_SPACE_STATUS_ERROR"); break; default: - fprintf(out, "%ld", (long)space_status); + HDfprintf(out, "%ld", (long)space_status); break; } /* end switch */ } /* end else */ @@ -695,24 +695,24 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5FD_mpio_xfer_t transfer = (H5FD_mpio_xfer_t)va_arg(ap, int); switch(transfer) { case H5FD_MPIO_INDEPENDENT: - fprintf(out, "H5FD_MPIO_INDEPENDENT"); + HDfprintf(out, "H5FD_MPIO_INDEPENDENT"); break; case H5FD_MPIO_COLLECTIVE: - fprintf(out, "H5FD_MPIO_COLLECTIVE"); + HDfprintf(out, "H5FD_MPIO_COLLECTIVE"); break; default: - fprintf(out, "%ld", (long)transfer); + HDfprintf(out, "%ld", (long)transfer); break; } /* end switch */ } /* end else */ @@ -721,35 +721,35 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'v': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5D_vds_view_t view = (H5D_vds_view_t)va_arg(ap, int); switch(view) { case H5D_VDS_ERROR: - fprintf(out, "H5D_VDS_ERROR"); + HDfprintf(out, "H5D_VDS_ERROR"); break; case H5D_VDS_FIRST_MISSING: - fprintf(out, "H5D_VDS_FIRST_MISSING"); + HDfprintf(out, "H5D_VDS_FIRST_MISSING"); break; case H5D_VDS_LAST_AVAILABLE: - fprintf(out, "H5D_VDS_LAST_AVAILABLE"); + HDfprintf(out, "H5D_VDS_LAST_AVAILABLE"); break; default: - fprintf(out, "%ld", (long)view); + HDfprintf(out, "%ld", (long)view); break; } /* end switch */ } /* end else */ break; default: - fprintf (out, "BADTYPE(D%c)", type[1]); + HDfprintf (out, "BADTYPE(D%c)", type[1]); goto error; } /* end switch */ break; @@ -757,17 +757,17 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'e': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { herr_t status = va_arg(ap, herr_t); if(status >= 0) - fprintf(out, "SUCCEED"); + HDfprintf(out, "SUCCEED"); else - fprintf(out, "FAIL"); + HDfprintf(out, "FAIL"); } /* end else */ break; @@ -776,24 +776,24 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'd': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5E_direction_t direction = (H5E_direction_t)va_arg(ap, int); switch(direction) { case H5E_WALK_UPWARD: - fprintf(out, "H5E_WALK_UPWARD"); + HDfprintf(out, "H5E_WALK_UPWARD"); break; case H5E_WALK_DOWNWARD: - fprintf(out, "H5E_WALK_DOWNWARD"); + HDfprintf(out, "H5E_WALK_DOWNWARD"); break; default: - fprintf(out, "%ld", (long)direction); + HDfprintf(out, "%ld", (long)direction); break; } /* end switch */ } /* end else */ @@ -802,45 +802,45 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'e': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5E_error2_t *error = va_arg(ap, H5E_error2_t *); - fprintf(out, "0x%lx", (unsigned long)error); + HDfprintf(out, "0x%lx", (unsigned long)error); } /* end else */ break; case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5E_type_t etype = (H5E_type_t)va_arg(ap, int); switch(etype) { case H5E_MAJOR: - fprintf(out, "H5E_MAJOR"); + HDfprintf(out, "H5E_MAJOR"); break; case H5E_MINOR: - fprintf(out, "H5E_MINOR"); + HDfprintf(out, "H5E_MINOR"); break; default: - fprintf(out, "%ld", (long)etype); + HDfprintf(out, "%ld", (long)etype); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(E%c)", type[1]); + HDfprintf(out, "BADTYPE(E%c)", type[1]); goto error; } /* end switch */ break; @@ -850,32 +850,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'd': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5F_close_degree_t degree = (H5F_close_degree_t)va_arg(ap, int); switch(degree) { case H5F_CLOSE_DEFAULT: - fprintf(out, "H5F_CLOSE_DEFAULT"); + HDfprintf(out, "H5F_CLOSE_DEFAULT"); break; case H5F_CLOSE_WEAK: - fprintf(out, "H5F_CLOSE_WEAK"); + HDfprintf(out, "H5F_CLOSE_WEAK"); break; case H5F_CLOSE_SEMI: - fprintf(out, "H5F_CLOSE_SEMI"); + HDfprintf(out, "H5F_CLOSE_SEMI"); break; case H5F_CLOSE_STRONG: - fprintf(out, "H5F_CLOSE_STRONG"); + HDfprintf(out, "H5F_CLOSE_STRONG"); break; default: - fprintf(out, "%ld", (long)degree); + HDfprintf(out, "%ld", (long)degree); break; } /* end switch */ } /* end else */ @@ -884,33 +884,33 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'f': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5F_fspace_strategy_t fs_strategy = (H5F_fspace_strategy_t)va_arg(ap, int); switch(fs_strategy) { case H5F_FSPACE_STRATEGY_FSM_AGGR: - fprintf(out, "H5F_FSPACE_STRATEGY_FSM_AGGR"); + HDfprintf(out, "H5F_FSPACE_STRATEGY_FSM_AGGR"); break; case H5F_FSPACE_STRATEGY_PAGE: - fprintf(out, "H5F_FSPACE_STRATEGY_PAGE"); + HDfprintf(out, "H5F_FSPACE_STRATEGY_PAGE"); break; case H5F_FSPACE_STRATEGY_AGGR: - fprintf(out, "H5F_FSPACE_STRATEGY_AGGR"); + HDfprintf(out, "H5F_FSPACE_STRATEGY_AGGR"); break; case H5F_FSPACE_STRATEGY_NONE: - fprintf(out, "H5F_FSPACE_STRATEGY_NONE"); + HDfprintf(out, "H5F_FSPACE_STRATEGY_NONE"); break; case H5F_FSPACE_STRATEGY_NTYPES: default: - fprintf(out, "%ld", (long)fs_strategy); + HDfprintf(out, "%ld", (long)fs_strategy); break; } /* end switch */ } /* end else */ @@ -919,49 +919,49 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'm': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5F_mem_t mem_type = (H5F_mem_t)va_arg(ap, int); switch(mem_type) { case H5FD_MEM_NOLIST: - fprintf(out, "H5FD_MEM_NOLIST"); + HDfprintf(out, "H5FD_MEM_NOLIST"); break; case H5FD_MEM_DEFAULT: - fprintf(out, "H5FD_MEM_DEFAULT"); + HDfprintf(out, "H5FD_MEM_DEFAULT"); break; case H5FD_MEM_SUPER: - fprintf(out, "H5FD_MEM_SUPER"); + HDfprintf(out, "H5FD_MEM_SUPER"); break; case H5FD_MEM_BTREE: - fprintf(out, "H5FD_MEM_BTREE"); + HDfprintf(out, "H5FD_MEM_BTREE"); break; case H5FD_MEM_DRAW: - fprintf(out, "H5FD_MEM_DRAW"); + HDfprintf(out, "H5FD_MEM_DRAW"); break; case H5FD_MEM_GHEAP: - fprintf(out, "H5FD_MEM_GHEAP"); + HDfprintf(out, "H5FD_MEM_GHEAP"); break; case H5FD_MEM_LHEAP: - fprintf(out, "H5FD_MEM_LHEAP"); + HDfprintf(out, "H5FD_MEM_LHEAP"); break; case H5FD_MEM_OHDR: - fprintf(out, "H5FD_MEM_OHDR"); + HDfprintf(out, "H5FD_MEM_OHDR"); break; case H5FD_MEM_NTYPES: default: - fprintf(out, "%ld", (long)mem_type); + HDfprintf(out, "%ld", (long)mem_type); break; } /* end switch */ } /* end else */ @@ -970,24 +970,24 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5F_scope_t scope = (H5F_scope_t)va_arg(ap, int); switch(scope) { case H5F_SCOPE_LOCAL: - fprintf(out, "H5F_SCOPE_LOCAL"); + HDfprintf(out, "H5F_SCOPE_LOCAL"); break; case H5F_SCOPE_GLOBAL: - fprintf(out, "H5F_SCOPE_GLOBAL"); + HDfprintf(out, "H5F_SCOPE_GLOBAL"); break; default: - fprintf(out, "%ld", (long)scope); + HDfprintf(out, "%ld", (long)scope); break; } /* end switch */ } /* end else */ @@ -996,40 +996,47 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ break; case 'v': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5F_libver_t libver_vers = (H5F_libver_t)va_arg(ap, int); switch(libver_vers) { case H5F_LIBVER_EARLIEST: - fprintf(out, "H5F_LIBVER_EARLIEST"); + HDfprintf(out, "H5F_LIBVER_EARLIEST"); break; - case H5F_LIBVER_LATEST: - fprintf(out, "H5F_LIBVER_LATEST"); + case H5F_LIBVER_V18: + HDfprintf(out, "H5F_LIBVER_V18"); break; + case H5F_LIBVER_V110: + HDcompile_assert(H5F_LIBVER_LATEST == H5F_LIBVER_V110); + HDfprintf(out, "H5F_LIBVER_LATEST"); + break; + + case H5F_LIBVER_ERROR: + case H5F_LIBVER_NBOUNDS: default: - fprintf(out, "%ld", (long)libver_vers); + HDfprintf(out, "%ld", (long)libver_vers); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(F%c)", type[1]); + HDfprintf(out, "BADTYPE(F%c)", type[1]); goto error; } /* end switch */ break; @@ -1040,46 +1047,46 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'o': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5G_obj_t obj_type = (H5G_obj_t)va_arg(ap, int); switch(obj_type) { case H5G_UNKNOWN: - fprintf(out, "H5G_UNKNOWN"); + HDfprintf(out, "H5G_UNKNOWN"); break; case H5G_GROUP: - fprintf(out, "H5G_GROUP"); + HDfprintf(out, "H5G_GROUP"); break; case H5G_DATASET: - fprintf(out, "H5G_DATASET"); + HDfprintf(out, "H5G_DATASET"); break; case H5G_TYPE: - fprintf(out, "H5G_TYPE"); + HDfprintf(out, "H5G_TYPE"); break; case H5G_LINK: - fprintf(out, "H5G_LINK"); + HDfprintf(out, "H5G_LINK"); break; case H5G_UDLINK: - fprintf(out, "H5G_UDLINK"); + HDfprintf(out, "H5G_UDLINK"); break; case H5G_RESERVED_5: case H5G_RESERVED_6: case H5G_RESERVED_7: - fprintf(out, "H5G_RESERVED(%ld)", (long)obj_type); + HDfprintf(out, "H5G_RESERVED(%ld)", (long)obj_type); break; default: - fprintf(out, "%ld", (long)obj_type); + HDfprintf(out, "%ld", (long)obj_type); break; } /* end switch */ } /* end else */ @@ -1088,20 +1095,20 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf (out, "0x%lx", (unsigned long)vp); + HDfprintf (out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5G_stat_t *statbuf = va_arg(ap, H5G_stat_t*); - fprintf(out, "0x%lx", (unsigned long)statbuf); + HDfprintf(out, "0x%lx", (unsigned long)statbuf); } break; #endif /* H5_NO_DEPRECATED_SYMBOLS */ default: - fprintf(out, "BADTYPE(G%c)", type[1]); + HDfprintf(out, "BADTYPE(G%c)", type[1]); goto error; } break; @@ -1109,22 +1116,22 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'h': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { hsize_t *p = (hsize_t *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) { if(H5S_UNLIMITED == p[i]) HDfprintf(out, "%sH5S_UNLIMITED", (i ? ", " : "")); else HDfprintf(out, "%s%Hu", (i ? ", " : ""), p[i]); } /* end for */ - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { hsize_t hsize = va_arg(ap, hsize_t); @@ -1143,18 +1150,18 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { hssize_t *p = (hssize_t *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%Hd", (i ? ", " : ""), p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { hssize_t hssize = va_arg(ap, hssize_t); @@ -1165,7 +1172,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - fprintf (out, "BADTYPE(H%c)", type[1]); + HDfprintf (out, "BADTYPE(H%c)", type[1]); goto error; } /* end switch */ break; @@ -1173,130 +1180,130 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'i': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { hid_t obj = va_arg(ap, hid_t); if(H5P_DEFAULT == obj) - fprintf(out, "H5P_DEFAULT"); + HDfprintf(out, "H5P_DEFAULT"); else if(obj < 0) - fprintf(out, "FAIL"); + HDfprintf(out, "FAIL"); else { switch(H5I_TYPE(obj)) { /* Use internal H5I macro instead of function call */ case H5I_UNINIT: - fprintf(out, "%ld (uninit - error)", (long)obj); + HDfprintf(out, "%ld (uninit - error)", (long)obj); break; case H5I_BADID: - fprintf(out, "%ld (error)", (long)obj); + HDfprintf(out, "%ld (error)", (long)obj); break; case H5I_FILE: - fprintf(out, "%ld (file)", (long)obj); + HDfprintf(out, "%ld (file)", (long)obj); break; case H5I_GROUP: - fprintf(out, "%ld (group)", (long)obj); + HDfprintf(out, "%ld (group)", (long)obj); break; case H5I_DATATYPE: if(obj == H5T_NATIVE_SCHAR_g) - fprintf(out, "H5T_NATIVE_SCHAR"); + HDfprintf(out, "H5T_NATIVE_SCHAR"); else if(obj == H5T_NATIVE_UCHAR_g) - fprintf(out, "H5T_NATIVE_UCHAR"); + HDfprintf(out, "H5T_NATIVE_UCHAR"); else if(obj == H5T_NATIVE_SHORT_g) - fprintf(out, "H5T_NATIVE_SHORT"); + HDfprintf(out, "H5T_NATIVE_SHORT"); else if(obj == H5T_NATIVE_USHORT_g) - fprintf(out, "H5T_NATIVE_USHORT"); + HDfprintf(out, "H5T_NATIVE_USHORT"); else if(obj == H5T_NATIVE_INT_g) - fprintf(out, "H5T_NATIVE_INT"); + HDfprintf(out, "H5T_NATIVE_INT"); else if(obj == H5T_NATIVE_UINT_g) - fprintf(out, "H5T_NATIVE_UINT"); + HDfprintf(out, "H5T_NATIVE_UINT"); else if(obj == H5T_NATIVE_LONG_g) - fprintf(out, "H5T_NATIVE_LONG"); + HDfprintf(out, "H5T_NATIVE_LONG"); else if(obj == H5T_NATIVE_ULONG_g) - fprintf(out, "H5T_NATIVE_ULONG"); + HDfprintf(out, "H5T_NATIVE_ULONG"); else if(obj == H5T_NATIVE_LLONG_g) - fprintf(out, "H5T_NATIVE_LLONG"); + HDfprintf(out, "H5T_NATIVE_LLONG"); else if(obj == H5T_NATIVE_ULLONG_g) - fprintf(out, "H5T_NATIVE_ULLONG"); + HDfprintf(out, "H5T_NATIVE_ULLONG"); else if(obj == H5T_NATIVE_FLOAT_g) - fprintf(out, "H5T_NATIVE_FLOAT"); + HDfprintf(out, "H5T_NATIVE_FLOAT"); else if(obj == H5T_NATIVE_DOUBLE_g) - fprintf(out, "H5T_NATIVE_DOUBLE"); + HDfprintf(out, "H5T_NATIVE_DOUBLE"); #if H5_SIZEOF_LONG_DOUBLE !=0 else if(obj == H5T_NATIVE_LDOUBLE_g) - fprintf(out, "H5T_NATIVE_LDOUBLE"); + HDfprintf(out, "H5T_NATIVE_LDOUBLE"); #endif else if(obj == H5T_IEEE_F32BE_g) - fprintf(out, "H5T_IEEE_F32BE"); + HDfprintf(out, "H5T_IEEE_F32BE"); else if(obj == H5T_IEEE_F32LE_g) - fprintf(out, "H5T_IEEE_F32LE"); + HDfprintf(out, "H5T_IEEE_F32LE"); else if(obj == H5T_IEEE_F64BE_g) - fprintf(out, "H5T_IEEE_F64BE"); + HDfprintf(out, "H5T_IEEE_F64BE"); else if(obj == H5T_IEEE_F64LE_g) - fprintf(out, "H5T_IEEE_F64LE"); + HDfprintf(out, "H5T_IEEE_F64LE"); else if(obj == H5T_STD_I8BE_g) - fprintf(out, "H5T_STD_I8BE"); + HDfprintf(out, "H5T_STD_I8BE"); else if(obj == H5T_STD_I8LE_g) - fprintf(out, "H5T_STD_I8LE"); + HDfprintf(out, "H5T_STD_I8LE"); else if(obj == H5T_STD_I16BE_g) - fprintf(out, "H5T_STD_I16BE"); + HDfprintf(out, "H5T_STD_I16BE"); else if(obj == H5T_STD_I16LE_g) - fprintf(out, "H5T_STD_I16LE"); + HDfprintf(out, "H5T_STD_I16LE"); else if(obj == H5T_STD_I32BE_g) - fprintf(out, "H5T_STD_I32BE"); + HDfprintf(out, "H5T_STD_I32BE"); else if(obj == H5T_STD_I32LE_g) - fprintf(out, "H5T_STD_I32LE"); + HDfprintf(out, "H5T_STD_I32LE"); else if(obj == H5T_STD_I64BE_g) - fprintf(out, "H5T_STD_I64BE"); + HDfprintf(out, "H5T_STD_I64BE"); else if(obj == H5T_STD_I64LE_g) - fprintf(out, "H5T_STD_I64LE"); + HDfprintf(out, "H5T_STD_I64LE"); else if(obj == H5T_STD_U8BE_g) - fprintf(out, "H5T_STD_U8BE"); + HDfprintf(out, "H5T_STD_U8BE"); else if(obj == H5T_STD_U8LE_g) - fprintf(out, "H5T_STD_U8LE"); + HDfprintf(out, "H5T_STD_U8LE"); else if(obj == H5T_STD_U16BE_g) - fprintf(out, "H5T_STD_U16BE"); + HDfprintf(out, "H5T_STD_U16BE"); else if(obj == H5T_STD_U16LE_g) - fprintf(out, "H5T_STD_U16LE"); + HDfprintf(out, "H5T_STD_U16LE"); else if(obj == H5T_STD_U32BE_g) - fprintf(out, "H5T_STD_U32BE"); + HDfprintf(out, "H5T_STD_U32BE"); else if(obj == H5T_STD_U32LE_g) - fprintf(out, "H5T_STD_U32LE"); + HDfprintf(out, "H5T_STD_U32LE"); else if(obj == H5T_STD_U64BE_g) - fprintf(out, "H5T_STD_U64BE"); + HDfprintf(out, "H5T_STD_U64BE"); else if(obj == H5T_STD_U64LE_g) - fprintf(out, "H5T_STD_U64LE"); + HDfprintf(out, "H5T_STD_U64LE"); else if(obj == H5T_STD_B8BE_g) - fprintf(out, "H5T_STD_B8BE"); + HDfprintf(out, "H5T_STD_B8BE"); else if(obj == H5T_STD_B8LE_g) - fprintf(out, "H5T_STD_B8LE"); + HDfprintf(out, "H5T_STD_B8LE"); else if(obj == H5T_STD_B16BE_g) - fprintf(out, "H5T_STD_B16BE"); + HDfprintf(out, "H5T_STD_B16BE"); else if(obj == H5T_STD_B16LE_g) - fprintf(out, "H5T_STD_B16LE"); + HDfprintf(out, "H5T_STD_B16LE"); else if(obj == H5T_STD_B32BE_g) - fprintf(out, "H5T_STD_B32BE"); + HDfprintf(out, "H5T_STD_B32BE"); else if(obj == H5T_STD_B32LE_g) - fprintf(out, "H5T_STD_B32LE"); + HDfprintf(out, "H5T_STD_B32LE"); else if(obj == H5T_STD_B64BE_g) - fprintf(out, "H5T_STD_B64BE"); + HDfprintf(out, "H5T_STD_B64BE"); else if(obj == H5T_STD_B64LE_g) - fprintf(out, "H5T_STD_B64LE"); + HDfprintf(out, "H5T_STD_B64LE"); else if(obj == H5T_C_S1_g) - fprintf(out, "H5T_C_S1"); + HDfprintf(out, "H5T_C_S1"); else if(obj == H5T_FORTRAN_S1_g) - fprintf(out, "H5T_FORTRAN_S1"); + HDfprintf(out, "H5T_FORTRAN_S1"); else - fprintf(out, "%ld (dtype)", (long)obj); + HDfprintf(out, "%ld (dtype)", (long)obj); break; case H5I_DATASPACE: - fprintf(out, "%ld (dspace)", (long)obj); + HDfprintf(out, "%ld (dspace)", (long)obj); /* Save the rank of simple data spaces for arrays */ /* This may generate recursive call to the library... -QAK */ { @@ -1309,47 +1316,47 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; case H5I_DATASET: - fprintf(out, "%ld (dset)", (long)obj); + HDfprintf(out, "%ld (dset)", (long)obj); break; case H5I_ATTR: - fprintf(out, "%ld (attr)", (long)obj); + HDfprintf(out, "%ld (attr)", (long)obj); break; case H5I_REFERENCE: - fprintf(out, "%ld (reference)", (long)obj); + HDfprintf(out, "%ld (reference)", (long)obj); break; case H5I_VFL: - fprintf(out, "%ld (file driver)", (long)obj); + HDfprintf(out, "%ld (file driver)", (long)obj); break; case H5I_GENPROP_CLS: - fprintf(out, "%ld (genprop class)", (long)obj); + HDfprintf(out, "%ld (genprop class)", (long)obj); break; case H5I_GENPROP_LST: - fprintf(out, "%ld (genprop list)", (long)obj); + HDfprintf(out, "%ld (genprop list)", (long)obj); break; case H5I_ERROR_CLASS: - fprintf(out, "%ld (err class)", (long)obj); + HDfprintf(out, "%ld (err class)", (long)obj); break; case H5I_ERROR_MSG: - fprintf(out, "%ld (err msg)", (long)obj); + HDfprintf(out, "%ld (err msg)", (long)obj); break; case H5I_ERROR_STACK: - fprintf(out, "%ld (err stack)", (long)obj); + HDfprintf(out, "%ld (err stack)", (long)obj); break; case H5I_NTYPES: - fprintf (out, "%ld (ntypes - error)", (long)obj); + HDfprintf (out, "%ld (ntypes - error)", (long)obj); break; default: - fprintf(out, "%ld (unknown class)", (long)obj); + HDfprintf(out, "%ld (unknown class)", (long)obj); break; } /* end switch */ } /* end else */ @@ -1361,32 +1368,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'i': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5_index_t idx_type = (H5_index_t)va_arg(ap, int); switch(idx_type) { case H5_INDEX_UNKNOWN: - fprintf(out, "H5_INDEX_UNKNOWN"); + HDfprintf(out, "H5_INDEX_UNKNOWN"); break; case H5_INDEX_NAME: - fprintf(out, "H5_INDEX_NAME"); + HDfprintf(out, "H5_INDEX_NAME"); break; case H5_INDEX_CRT_ORDER: - fprintf(out, "H5_INDEX_CRT_ORDER"); + HDfprintf(out, "H5_INDEX_CRT_ORDER"); break; case H5_INDEX_N: - fprintf(out, "H5_INDEX_N"); + HDfprintf(out, "H5_INDEX_N"); break; default: - fprintf(out, "%ld", (long)idx_type); + HDfprintf(out, "%ld", (long)idx_type); break; } /* end switch */ } /* end else */ @@ -1395,36 +1402,36 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'o': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5_iter_order_t order = (H5_iter_order_t)va_arg(ap, int); switch(order) { case H5_ITER_UNKNOWN: - fprintf(out, "H5_ITER_UNKNOWN"); + HDfprintf(out, "H5_ITER_UNKNOWN"); break; case H5_ITER_INC: - fprintf(out, "H5_ITER_INC"); + HDfprintf(out, "H5_ITER_INC"); break; case H5_ITER_DEC: - fprintf(out, "H5_ITER_DEC"); + HDfprintf(out, "H5_ITER_DEC"); break; case H5_ITER_NATIVE: - fprintf(out, "H5_ITER_NATIVE"); + HDfprintf(out, "H5_ITER_NATIVE"); break; case H5_ITER_N: - fprintf(out, "H5_ITER_N"); + HDfprintf(out, "H5_ITER_N"); break; default: - fprintf(out, "%ld", (long)order); + HDfprintf(out, "%ld", (long)order); break; } /* end switch */ } /* end else */ @@ -1433,23 +1440,23 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { int *p = (int*)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) - fprintf(out, "%s%d", (i ? ", " : ""), p[i]); - fprintf(out, "}"); + HDfprintf(out, "%s%d", (i ? ", " : ""), p[i]); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { int is = va_arg(ap, int); - fprintf (out, "%d", is); + HDfprintf (out, "%d", is); asize[argno] = is; } /* end else */ break; @@ -1457,80 +1464,80 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5I_type_t id_type = (H5I_type_t)va_arg(ap, int); switch (id_type) { case H5I_UNINIT: - fprintf(out, "H5I_UNINIT"); + HDfprintf(out, "H5I_UNINIT"); break; case H5I_BADID: - fprintf(out, "H5I_BADID"); + HDfprintf(out, "H5I_BADID"); break; case H5I_FILE: - fprintf(out, "H5I_FILE"); + HDfprintf(out, "H5I_FILE"); break; case H5I_GROUP: - fprintf(out, "H5I_GROUP"); + HDfprintf(out, "H5I_GROUP"); break; case H5I_DATATYPE: - fprintf(out, "H5I_DATATYPE"); + HDfprintf(out, "H5I_DATATYPE"); break; case H5I_DATASPACE: - fprintf(out, "H5I_DATASPACE"); + HDfprintf(out, "H5I_DATASPACE"); break; case H5I_DATASET: - fprintf(out, "H5I_DATASET"); + HDfprintf(out, "H5I_DATASET"); break; case H5I_ATTR: - fprintf(out, "H5I_ATTR"); + HDfprintf(out, "H5I_ATTR"); break; case H5I_REFERENCE: - fprintf(out, "H5I_REFERENCE"); + HDfprintf(out, "H5I_REFERENCE"); break; case H5I_VFL: - fprintf(out, "H5I_VFL"); + HDfprintf(out, "H5I_VFL"); break; case H5I_GENPROP_CLS: - fprintf(out, "H5I_GENPROP_CLS"); + HDfprintf(out, "H5I_GENPROP_CLS"); break; case H5I_GENPROP_LST: - fprintf(out, "H5I_GENPROP_LST"); + HDfprintf(out, "H5I_GENPROP_LST"); break; case H5I_ERROR_CLASS: - fprintf(out, "H5I_ERROR_CLASS"); + HDfprintf(out, "H5I_ERROR_CLASS"); break; case H5I_ERROR_MSG: - fprintf(out, "H5I_ERROR_MSG"); + HDfprintf(out, "H5I_ERROR_MSG"); break; case H5I_ERROR_STACK: - fprintf(out, "H5I_ERROR_STACK"); + HDfprintf(out, "H5I_ERROR_STACK"); break; case H5I_NTYPES: - fprintf(out, "H5I_NTYPES"); + HDfprintf(out, "H5I_NTYPES"); break; default: - fprintf(out, "%ld", (long)id_type); + HDfprintf(out, "%ld", (long)id_type); break; } /* end switch */ } /* end else */ @@ -1539,29 +1546,29 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'u': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { unsigned *p = (unsigned*)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%u", i?", ":"", p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { unsigned iu = va_arg(ap, unsigned); - fprintf(out, "%u", iu); + HDfprintf(out, "%u", iu); asize[argno] = iu; } /* end else */ break; default: - fprintf (out, "BADTYPE(I%c)", type[1]); + HDfprintf (out, "BADTYPE(I%c)", type[1]); goto error; } /* end switch */ break; @@ -1571,43 +1578,43 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'l': if(ptr) { if(vp) - fprintf (out, "0x%lx", (unsigned long)vp); + HDfprintf (out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5L_type_t link_type = (H5L_type_t)va_arg(ap, int); switch(link_type) { case H5L_TYPE_ERROR: - fprintf(out, "H5L_TYPE_ERROR"); + HDfprintf(out, "H5L_TYPE_ERROR"); break; case H5L_TYPE_HARD: - fprintf(out, "H5L_TYPE_HARD"); + HDfprintf(out, "H5L_TYPE_HARD"); break; case H5L_TYPE_SOFT: - fprintf(out, "H5L_TYPE_SOFT"); + HDfprintf(out, "H5L_TYPE_SOFT"); break; case H5L_TYPE_EXTERNAL: - fprintf(out, "H5L_TYPE_EXTERNAL"); + HDfprintf(out, "H5L_TYPE_EXTERNAL"); break; case H5L_TYPE_MAX: - fprintf(out, "H5L_TYPE_MAX"); + HDfprintf(out, "H5L_TYPE_MAX"); break; default: - fprintf(out, "%ld", (long)link_type); + HDfprintf(out, "%ld", (long)link_type); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(G%c)", type[1]); + HDfprintf(out, "BADTYPE(G%c)", type[1]); goto error; } /* end switch */ break; @@ -1617,15 +1624,15 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ #ifdef H5_HAVE_PARALLEL else { MPI_Comm comm = va_arg(ap, MPI_Comm); - fprintf(out, "%ld", (long)comm); + HDfprintf(out, "%ld", (long)comm); } /* end else */ #endif /* H5_HAVE_PARALLEL */ break; @@ -1633,15 +1640,15 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'i': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ #ifdef H5_HAVE_PARALLEL else { MPI_Info info = va_arg(ap, MPI_Info); - fprintf(out, "%ld", (long)info); + HDfprintf(out, "%ld", (long)info); } /* end else */ #endif /* H5_HAVE_PARALLEL */ break; @@ -1649,52 +1656,52 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5FD_mem_t mt = (H5FD_mem_t)va_arg(ap, int); switch(mt) { case H5FD_MEM_NOLIST: - fprintf(out, "H5FD_MEM_NOLIST"); + HDfprintf(out, "H5FD_MEM_NOLIST"); break; case H5FD_MEM_DEFAULT: - fprintf(out, "H5FD_MEM_DEFAULT"); + HDfprintf(out, "H5FD_MEM_DEFAULT"); break; case H5FD_MEM_SUPER: - fprintf(out, "H5FD_MEM_SUPER"); + HDfprintf(out, "H5FD_MEM_SUPER"); break; case H5FD_MEM_BTREE: - fprintf(out, "H5FD_MEM_BTREE"); + HDfprintf(out, "H5FD_MEM_BTREE"); break; case H5FD_MEM_DRAW: - fprintf(out, "H5FD_MEM_DRAW"); + HDfprintf(out, "H5FD_MEM_DRAW"); break; case H5FD_MEM_GHEAP: - fprintf(out, "H5FD_MEM_GHEAP"); + HDfprintf(out, "H5FD_MEM_GHEAP"); break; case H5FD_MEM_LHEAP: - fprintf(out, "H5FD_MEM_LHEAP"); + HDfprintf(out, "H5FD_MEM_LHEAP"); break; case H5FD_MEM_OHDR: - fprintf(out, "H5FD_MEM_OHDR"); + HDfprintf(out, "H5FD_MEM_OHDR"); break; case H5FD_MEM_NTYPES: - fprintf(out, "H5FD_MEM_NTYPES"); + HDfprintf(out, "H5FD_MEM_NTYPES"); break; default: - fprintf(out, "%ld", (long)mt); + HDfprintf(out, "%ld", (long)mt); break; } /* end switch */ } /* end else */ @@ -1708,14 +1715,14 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'o': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { off_t offset = va_arg(ap, off_t); - fprintf (out, "%ld", (long)offset); + HDfprintf (out, "%ld", (long)offset); } /* end else */ break; @@ -1724,43 +1731,43 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5O_type_t objtype = (H5O_type_t)va_arg(ap, int); switch(objtype) { case H5O_TYPE_UNKNOWN: - fprintf(out, "H5O_TYPE_UNKNOWN"); + HDfprintf(out, "H5O_TYPE_UNKNOWN"); break; case H5O_TYPE_GROUP: - fprintf(out, "H5O_TYPE_GROUP"); + HDfprintf(out, "H5O_TYPE_GROUP"); break; case H5O_TYPE_DATASET: - fprintf(out, "H5O_TYPE_DATASET"); + HDfprintf(out, "H5O_TYPE_DATASET"); break; case H5O_TYPE_NAMED_DATATYPE: - fprintf(out, "H5O_TYPE_NAMED_DATATYPE"); + HDfprintf(out, "H5O_TYPE_NAMED_DATATYPE"); break; case H5O_TYPE_NTYPES: - fprintf(out, "H5O_TYPE_TYPES"); + HDfprintf(out, "H5O_TYPE_TYPES"); break; default: - fprintf(out, "BADTYPE(%ld)", (long)objtype); + HDfprintf(out, "BADTYPE(%ld)", (long)objtype); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(S%c)", type[1]); + HDfprintf(out, "BADTYPE(S%c)", type[1]); goto error; } /* end switch */ break; @@ -1768,9 +1775,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'p': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { hid_t pclass_id = va_arg(ap, hid_t); @@ -1781,20 +1788,20 @@ H5_trace(const double *returning, const char *func, const char *type, ...) /* (This may generate recursive call to the library... -QAK) */ if(NULL != (pclass = (H5P_genclass_t *)H5I_object(pclass_id)) && NULL != (class_name = H5P_get_class_name(pclass))) { - fprintf(out, "%s", class_name); + HDfprintf(out, "%s", class_name); H5MM_xfree(class_name); } /* end if */ else - fprintf(out, "%ld", (long)pclass_id); + HDfprintf(out, "%ld", (long)pclass_id); } /* end else */ break; case 'r': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { hobj_ref_t ref = va_arg(ap, hobj_ref_t); @@ -1808,39 +1815,39 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5R_type_t reftype = (H5R_type_t)va_arg(ap, int); switch(reftype) { case H5R_BADTYPE: - fprintf(out, "H5R_BADTYPE"); + HDfprintf(out, "H5R_BADTYPE"); break; case H5R_OBJECT: - fprintf(out, "H5R_OBJECT"); + HDfprintf(out, "H5R_OBJECT"); break; case H5R_DATASET_REGION: - fprintf(out, "H5R_DATASET_REGION"); + HDfprintf(out, "H5R_DATASET_REGION"); break; case H5R_MAXTYPE: - fprintf(out, "H5R_MAXTYPE"); + HDfprintf(out, "H5R_MAXTYPE"); break; default: - fprintf(out, "BADTYPE(%ld)", (long)reftype); + HDfprintf(out, "BADTYPE(%ld)", (long)reftype); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(S%c)", type[1]); + HDfprintf(out, "BADTYPE(S%c)", type[1]); goto error; } break; @@ -1850,32 +1857,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5S_class_t cls = (H5S_class_t)va_arg(ap, int); switch(cls) { case H5S_NO_CLASS: - fprintf(out, "H5S_NO_CLASS"); + HDfprintf(out, "H5S_NO_CLASS"); break; case H5S_SCALAR: - fprintf(out, "H5S_SCALAR"); + HDfprintf(out, "H5S_SCALAR"); break; case H5S_SIMPLE: - fprintf(out, "H5S_SIMPLE"); + HDfprintf(out, "H5S_SIMPLE"); break; case H5S_NULL: - fprintf(out, "H5S_NULL"); + HDfprintf(out, "H5S_NULL"); break; default: - fprintf(out, "%ld", (long)cls); + HDfprintf(out, "%ld", (long)cls); break; } /* end switch */ } /* end else */ @@ -1884,56 +1891,56 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5S_seloper_t so = (H5S_seloper_t)va_arg(ap, int); switch(so) { case H5S_SELECT_NOOP: - fprintf(out, "H5S_NOOP"); + HDfprintf(out, "H5S_NOOP"); break; case H5S_SELECT_SET: - fprintf(out, "H5S_SELECT_SET"); + HDfprintf(out, "H5S_SELECT_SET"); break; case H5S_SELECT_OR: - fprintf(out, "H5S_SELECT_OR"); + HDfprintf(out, "H5S_SELECT_OR"); break; case H5S_SELECT_AND: - fprintf(out, "H5S_SELECT_AND"); + HDfprintf(out, "H5S_SELECT_AND"); break; case H5S_SELECT_XOR: - fprintf(out, "H5S_SELECT_XOR"); + HDfprintf(out, "H5S_SELECT_XOR"); break; case H5S_SELECT_NOTB: - fprintf(out, "H5S_SELECT_NOTB"); + HDfprintf(out, "H5S_SELECT_NOTB"); break; case H5S_SELECT_NOTA: - fprintf(out, "H5S_SELECT_NOTA"); + HDfprintf(out, "H5S_SELECT_NOTA"); break; case H5S_SELECT_APPEND: - fprintf(out, "H5S_SELECT_APPEND"); + HDfprintf(out, "H5S_SELECT_APPEND"); break; case H5S_SELECT_PREPEND: - fprintf(out, "H5S_SELECT_PREPEND"); + HDfprintf(out, "H5S_SELECT_PREPEND"); break; case H5S_SELECT_INVALID: - fprintf(out, "H5S_SELECT_INVALID"); + HDfprintf(out, "H5S_SELECT_INVALID"); break; default: - fprintf(out, "%ld", (long)so); + HDfprintf(out, "%ld", (long)so); break; } /* end switch */ } /* end else */ @@ -1942,47 +1949,47 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5S_sel_type st = (H5S_sel_type)va_arg(ap, int); switch(st) { case H5S_SEL_ERROR: - fprintf(out, "H5S_SEL_ERROR"); + HDfprintf(out, "H5S_SEL_ERROR"); break; case H5S_SEL_NONE: - fprintf(out, "H5S_SEL_NONE"); + HDfprintf(out, "H5S_SEL_NONE"); break; case H5S_SEL_POINTS: - fprintf(out, "H5S_SEL_POINTS"); + HDfprintf(out, "H5S_SEL_POINTS"); break; case H5S_SEL_HYPERSLABS: - fprintf(out, "H5S_SEL_HYPERSLABS"); + HDfprintf(out, "H5S_SEL_HYPERSLABS"); break; case H5S_SEL_ALL: - fprintf(out, "H5S_SEL_ALL"); + HDfprintf(out, "H5S_SEL_ALL"); break; case H5S_SEL_N: - fprintf(out, "H5S_SEL_N"); + HDfprintf(out, "H5S_SEL_N"); break; default: - fprintf(out, "%ld", (long)st); + HDfprintf(out, "%ld", (long)st); break; } /* end switch */ } /* end else */ break; default: - fprintf(out, "BADTYPE(S%c)", type[1]); + HDfprintf(out, "BADTYPE(S%c)", type[1]); goto error; } /* end switch */ break; @@ -1990,14 +1997,14 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { const char *str = va_arg(ap, const char *); - fprintf(out, "\"%s\"", str); + HDfprintf(out, "\"%s\"", str); } /* end else */ break; @@ -2006,24 +2013,24 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_cset_t cset = (H5T_cset_t)va_arg(ap, int); switch(cset) { case H5T_CSET_ERROR: - fprintf(out, "H5T_CSET_ERROR"); + HDfprintf(out, "H5T_CSET_ERROR"); break; case H5T_CSET_ASCII: - fprintf(out, "H5T_CSET_ASCII"); + HDfprintf(out, "H5T_CSET_ASCII"); break; case H5T_CSET_UTF8: - fprintf(out, "H5T_CSET_UTF8"); + HDfprintf(out, "H5T_CSET_UTF8"); break; case H5T_CSET_RESERVED_2: @@ -2040,11 +2047,11 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5T_CSET_RESERVED_13: case H5T_CSET_RESERVED_14: case H5T_CSET_RESERVED_15: - fprintf(out, "H5T_CSET_RESERVED_%ld", (long)cset); + HDfprintf(out, "H5T_CSET_RESERVED_%ld", (long)cset); break; default: - fprintf(out, "%ld", (long)cset); + HDfprintf(out, "%ld", (long)cset); break; } /* end switch */ } /* end else */ @@ -2053,28 +2060,28 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'd': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_direction_t direct = (H5T_direction_t)va_arg(ap, int); switch(direct) { case H5T_DIR_DEFAULT: - fprintf(out, "H5T_DIR_DEFAULT"); + HDfprintf(out, "H5T_DIR_DEFAULT"); break; case H5T_DIR_ASCEND: - fprintf(out, "H5T_DIR_ASCEND"); + HDfprintf(out, "H5T_DIR_ASCEND"); break; case H5T_DIR_DESCEND: - fprintf(out, "H5T_DIR_DESCEND"); + HDfprintf(out, "H5T_DIR_DESCEND"); break; default: - fprintf(out, "%ld", (long)direct); + HDfprintf(out, "%ld", (long)direct); break; } /* end switch */ } /* end else */ @@ -2083,28 +2090,28 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'e': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_pers_t pers = (H5T_pers_t)va_arg(ap, int); switch(pers) { case H5T_PERS_DONTCARE: - fprintf(out, "H5T_PERS_DONTCARE"); + HDfprintf(out, "H5T_PERS_DONTCARE"); break; case H5T_PERS_SOFT: - fprintf(out, "H5T_PERS_SOFT"); + HDfprintf(out, "H5T_PERS_SOFT"); break; case H5T_PERS_HARD: - fprintf(out, "H5T_PERS_HARD"); + HDfprintf(out, "H5T_PERS_HARD"); break; default: - fprintf(out, "%ld", (long)pers); + HDfprintf(out, "%ld", (long)pers); break; } /* end switch */ } /* end else */ @@ -2113,32 +2120,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'n': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_norm_t norm = (H5T_norm_t)va_arg(ap, int); switch(norm) { case H5T_NORM_ERROR: - fprintf(out, "H5T_NORM_ERROR"); + HDfprintf(out, "H5T_NORM_ERROR"); break; case H5T_NORM_IMPLIED: - fprintf(out, "H5T_NORM_IMPLIED"); + HDfprintf(out, "H5T_NORM_IMPLIED"); break; case H5T_NORM_MSBSET: - fprintf(out, "H5T_NORM_MSBSET"); + HDfprintf(out, "H5T_NORM_MSBSET"); break; case H5T_NORM_NONE: - fprintf(out, "H5T_NORM_NONE"); + HDfprintf(out, "H5T_NORM_NONE"); break; default: - fprintf(out, "%ld", (long)norm); + HDfprintf(out, "%ld", (long)norm); break; } /* end switch */ } /* end else */ @@ -2147,40 +2154,40 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'o': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_order_t order = (H5T_order_t)va_arg(ap, int); switch(order) { case H5T_ORDER_ERROR: - fprintf(out, "H5T_ORDER_ERROR"); + HDfprintf(out, "H5T_ORDER_ERROR"); break; case H5T_ORDER_LE: - fprintf(out, "H5T_ORDER_LE"); + HDfprintf(out, "H5T_ORDER_LE"); break; case H5T_ORDER_BE: - fprintf(out, "H5T_ORDER_BE"); + HDfprintf(out, "H5T_ORDER_BE"); break; case H5T_ORDER_VAX: - fprintf(out, "H5T_ORDER_VAX"); + HDfprintf(out, "H5T_ORDER_VAX"); break; case H5T_ORDER_MIXED: - fprintf(out, "H5T_ORDER_MIXED"); + HDfprintf(out, "H5T_ORDER_MIXED"); break; case H5T_ORDER_NONE: - fprintf(out, "H5T_ORDER_NONE"); + HDfprintf(out, "H5T_ORDER_NONE"); break; default: - fprintf(out, "%ld", (long)order); + HDfprintf(out, "%ld", (long)order); break; } /* end switch */ } /* end else */ @@ -2189,36 +2196,36 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'p': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_pad_t pad = (H5T_pad_t)va_arg(ap, int); switch(pad) { case H5T_PAD_ERROR: - fprintf(out, "H5T_PAD_ERROR"); + HDfprintf(out, "H5T_PAD_ERROR"); break; case H5T_PAD_ZERO: - fprintf(out, "H5T_PAD_ZERO"); + HDfprintf(out, "H5T_PAD_ZERO"); break; case H5T_PAD_ONE: - fprintf(out, "H5T_PAD_ONE"); + HDfprintf(out, "H5T_PAD_ONE"); break; case H5T_PAD_BACKGROUND: - fprintf(out, "H5T_PAD_BACKGROUND"); + HDfprintf(out, "H5T_PAD_BACKGROUND"); break; case H5T_NPAD: - fprintf(out, "H5T_NPAD"); + HDfprintf(out, "H5T_NPAD"); break; default: - fprintf(out, "%ld", (long)pad); + HDfprintf(out, "%ld", (long)pad); break; } /* end switch */ } /* end else */ @@ -2227,32 +2234,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 's': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_sign_t sign = (H5T_sign_t)va_arg(ap, int); switch(sign) { case H5T_SGN_ERROR: - fprintf(out, "H5T_SGN_ERROR"); + HDfprintf(out, "H5T_SGN_ERROR"); break; case H5T_SGN_NONE: - fprintf(out, "H5T_SGN_NONE"); + HDfprintf(out, "H5T_SGN_NONE"); break; case H5T_SGN_2: - fprintf(out, "H5T_SGN_2"); + HDfprintf(out, "H5T_SGN_2"); break; case H5T_NSGN: - fprintf(out, "H5T_NSGN"); + HDfprintf(out, "H5T_NSGN"); break; default: - fprintf(out, "%ld", (long)sign); + HDfprintf(out, "%ld", (long)sign); break; } /* end switch */ } /* end else */ @@ -2261,68 +2268,68 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_class_t type_class = (H5T_class_t)va_arg(ap, int); switch(type_class) { case H5T_NO_CLASS: - fprintf(out, "H5T_NO_CLASS"); + HDfprintf(out, "H5T_NO_CLASS"); break; case H5T_INTEGER: - fprintf(out, "H5T_INTEGER"); + HDfprintf(out, "H5T_INTEGER"); break; case H5T_FLOAT: - fprintf(out, "H5T_FLOAT"); + HDfprintf(out, "H5T_FLOAT"); break; case H5T_TIME: - fprintf(out, "H5T_TIME"); + HDfprintf(out, "H5T_TIME"); break; case H5T_STRING: - fprintf(out, "H5T_STRING"); + HDfprintf(out, "H5T_STRING"); break; case H5T_BITFIELD: - fprintf(out, "H5T_BITFIELD"); + HDfprintf(out, "H5T_BITFIELD"); break; case H5T_OPAQUE: - fprintf(out, "H5T_OPAQUE"); + HDfprintf(out, "H5T_OPAQUE"); break; case H5T_COMPOUND: - fprintf(out, "H5T_COMPOUND"); + HDfprintf(out, "H5T_COMPOUND"); break; case H5T_REFERENCE: - fprintf(out, "H5T_REFERENCE"); + HDfprintf(out, "H5T_REFERENCE"); break; case H5T_ENUM: - fprintf(out, "H5T_ENUM"); + HDfprintf(out, "H5T_ENUM"); break; case H5T_VLEN: - fprintf(out, "H5T_VLEN"); + HDfprintf(out, "H5T_VLEN"); break; case H5T_ARRAY: - fprintf(out, "H5T_ARRAY"); + HDfprintf(out, "H5T_ARRAY"); break; case H5T_NCLASSES: - fprintf(out, "H5T_NCLASSES"); + HDfprintf(out, "H5T_NCLASSES"); break; default: - fprintf(out, "%ld", (long)type_class); + HDfprintf(out, "%ld", (long)type_class); break; } /* end switch */ } /* end else */ @@ -2331,28 +2338,28 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'z': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5T_str_t str = (H5T_str_t)va_arg(ap, int); switch(str) { case H5T_STR_ERROR: - fprintf(out, "H5T_STR_ERROR"); + HDfprintf(out, "H5T_STR_ERROR"); break; case H5T_STR_NULLTERM: - fprintf(out, "H5T_STR_NULLTERM"); + HDfprintf(out, "H5T_STR_NULLTERM"); break; case H5T_STR_NULLPAD: - fprintf(out, "H5T_STR_NULLPAD"); + HDfprintf(out, "H5T_STR_NULLPAD"); break; case H5T_STR_SPACEPAD: - fprintf(out, "H5T_STR_SPACEPAD"); + HDfprintf(out, "H5T_STR_SPACEPAD"); break; case H5T_STR_RESERVED_3: @@ -2368,18 +2375,18 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case H5T_STR_RESERVED_13: case H5T_STR_RESERVED_14: case H5T_STR_RESERVED_15: - fprintf(out, "H5T_STR_RESERVED(%ld)",(long)str); + HDfprintf(out, "H5T_STR_RESERVED(%ld)",(long)str); break; default: - fprintf(out, "%ld", (long)str); + HDfprintf(out, "%ld", (long)str); break; } /* end switch */ } /* end else */ break; default: - fprintf (out, "BADTYPE(T%c)", type[1]); + HDfprintf (out, "BADTYPE(T%c)", type[1]); goto error; } /* end switch */ break; @@ -2387,19 +2394,19 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 't': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { htri_t tri_var = va_arg (ap, htri_t); if(tri_var>0) - fprintf (out, "TRUE"); + HDfprintf (out, "TRUE"); else if(!tri_var) - fprintf (out, "FALSE"); + HDfprintf (out, "FALSE"); else - fprintf(out, "FAIL(%d)", (int)tri_var); + HDfprintf(out, "FAIL(%d)", (int)tri_var); } /* end else */ break; @@ -2408,23 +2415,23 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'l': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { unsigned long *p = (unsigned long *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%lu", i?", ":"", p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { unsigned long iul = va_arg(ap, unsigned long); - fprintf(out, "%lu", iul); + HDfprintf(out, "%lu", iul); asize[argno] = (hssize_t)iul; } /* end else */ break; @@ -2432,29 +2439,29 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'L': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { unsigned long long *p = (unsigned long long *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%llu", i?", ":"", p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { unsigned long long iull = va_arg(ap, unsigned long long); - fprintf(out, "%llu", iull); + HDfprintf(out, "%llu", iull); asize[argno] = (hssize_t)iull; } /* end else */ break; default: - fprintf (out, "BADTYPE(U%c)", type[1]); + HDfprintf (out, "BADTYPE(U%c)", type[1]); goto error; } /* end switch */ break; @@ -2462,48 +2469,48 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'x': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { void **p = (void**)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) { if(p[i]) - fprintf(out, "%s0x%lx", (i ? ", " : ""), (unsigned long)(p[i])); + HDfprintf(out, "%s0x%lx", (i ? ", " : ""), (unsigned long)(p[i])); else - fprintf(out, "%sNULL", (i ? ", " : "")); + HDfprintf(out, "%sNULL", (i ? ", " : "")); } /* end for */ - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { vp = va_arg (ap, void *); if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end else */ break; case 'z': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { size_t *p = (size_t *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%Zu", (i ? ", " : ""), p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { size_t size = va_arg(ap, size_t); @@ -2518,28 +2525,28 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'a': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5Z_SO_scale_type_t scale_type = (H5Z_SO_scale_type_t)va_arg(ap, int); switch(scale_type) { case H5Z_SO_FLOAT_DSCALE: - fprintf(out, "H5Z_SO_FLOAT_DSCALE"); + HDfprintf(out, "H5Z_SO_FLOAT_DSCALE"); break; case H5Z_SO_FLOAT_ESCALE: - fprintf(out, "H5Z_SO_FLOAT_ESCALE"); + HDfprintf(out, "H5Z_SO_FLOAT_ESCALE"); break; case H5Z_SO_INT: - fprintf(out, "H5Z_SO_INT"); + HDfprintf(out, "H5Z_SO_INT"); break; default: - fprintf(out, "%ld", (long)scale_type); + HDfprintf(out, "%ld", (long)scale_type); break; } /* end switch */ } /* end else */ @@ -2548,68 +2555,68 @@ H5_trace(const double *returning, const char *func, const char *type, ...) case 'c': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5Z_class2_t *filter = va_arg(ap, H5Z_class2_t*); - fprintf(out, "0x%lx", (unsigned long)filter); + HDfprintf(out, "0x%lx", (unsigned long)filter); } /* end else */ break; case 'e': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5Z_EDC_t edc = (H5Z_EDC_t)va_arg(ap, int); if(H5Z_DISABLE_EDC == edc) - fprintf(out, "H5Z_DISABLE_EDC"); + HDfprintf(out, "H5Z_DISABLE_EDC"); else if (H5Z_ENABLE_EDC == edc) - fprintf(out, "H5Z_ENABLE_EDC"); + HDfprintf(out, "H5Z_ENABLE_EDC"); else - fprintf(out, "%ld", (long)edc); + HDfprintf(out, "%ld", (long)edc); } /* end else */ break; case 'f': if(ptr) { if(vp) - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { H5Z_filter_t id = va_arg(ap, H5Z_filter_t); if(H5Z_FILTER_DEFLATE == id) - fprintf(out, "H5Z_FILTER_DEFLATE"); + HDfprintf(out, "H5Z_FILTER_DEFLATE"); else - fprintf(out, "%ld", (long)id); + HDfprintf(out, "%ld", (long)id); } /* end else */ break; case 's': if(ptr) { if(vp) { - fprintf(out, "0x%lx", (unsigned long)vp); + HDfprintf(out, "0x%lx", (unsigned long)vp); if(asize_idx >= 0 && asize[asize_idx] >= 0) { ssize_t *p = (ssize_t *)vp; - fprintf(out, " {"); + HDfprintf(out, " {"); for(i = 0; i < asize[asize_idx]; i++) HDfprintf(out, "%s%Zd", (i ? ", " : ""), p[i]); - fprintf(out, "}"); + HDfprintf(out, "}"); } /* end if */ } /* end if */ else - fprintf(out, "NULL"); + HDfprintf(out, "NULL"); } /* end if */ else { ssize_t ssize = va_arg(ap, ssize_t); @@ -2620,32 +2627,32 @@ H5_trace(const double *returning, const char *func, const char *type, ...) break; default: - fprintf(out, "BADTYPE(Z%c)", type[1]); + HDfprintf(out, "BADTYPE(Z%c)", type[1]); goto error; } /* end switch */ break; default: if(HDisupper(type[0])) - fprintf(out, "BADTYPE(%c%c)", type[0], type[1]); + HDfprintf(out, "BADTYPE(%c%c)", type[0], type[1]); else - fprintf(out, "BADTYPE(%c)", type[0]); + HDfprintf(out, "BADTYPE(%c)", type[0]); goto error; } /* end switch */ } /* end for */ /* Display event time for return */ if(returning && H5_debug_g.ttimes) - fprintf(out, " @%.6f [dt=%.6f]", (event_time.etime - first_time.etime), + HDfprintf(out, " @%.6f [dt=%.6f]", (event_time.etime - first_time.etime), (event_time.etime - *returning)); error: va_end(ap); if(returning) - fprintf(out, ";\n"); + HDfprintf(out, ";\n"); else { last_call_depth = current_depth++; - fprintf (out, ")"); + HDfprintf (out, ")"); } /* end else */ HDfflush(out); diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index fd88b5f..b3b6f5c 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TEST) #----------------------------------------------------------------------------- diff --git a/test/CMakeTests.cmake b/test/CMakeTests.cmake index f97e304..221b857 100644 --- a/test/CMakeTests.cmake +++ b/test/CMakeTests.cmake @@ -1018,6 +1018,7 @@ if (HDF5_BUILD_GENERATORS) gen_bad_offset gen_bad_ohdr gen_bogus + gen_bounds gen_cross gen_deflate gen_filters diff --git a/test/Makefile.am b/test/Makefile.am index efdc1ca..ab81f50 100644 --- a/test/Makefile.am +++ b/test/Makefile.am @@ -95,7 +95,7 @@ endif BUILD_ALL_PROGS=gen_bad_ohdr gen_bogus gen_cross gen_deflate gen_filters gen_new_array \ gen_new_fill gen_new_group gen_new_mtime gen_new_super gen_noencoder \ gen_nullspace gen_udlinks space_overflow gen_filespace gen_specmetaread \ - gen_sizes_lheap gen_file_image gen_plist gen_bad_offset + gen_sizes_lheap gen_file_image gen_plist gen_bad_offset gen_bounds if BUILD_ALL_CONDITIONAL noinst_PROGRAMS=$(BUILD_ALL_PROGS) diff --git a/test/dangle.c b/test/dangle.c index 62b1d1b..75e9c84 100644 --- a/test/dangle.c +++ b/test/dangle.c @@ -31,17 +31,17 @@ const char *FILENAME[] = { #define TYPENAME "Type" #define ATTRNAME "Attribute" - + /*------------------------------------------------------------------------- - * Function: test_dangle_dataset + * Function: test_dangle_dataset * - * Purpose: Check for dangling dataset IDs causing problems on library + * Purpose: Check for dangling dataset IDs causing problems on library * shutdown * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, May 13, 2003 * * Modifications: @@ -51,7 +51,7 @@ const char *FILENAME[] = { static int test_dangle_dataset(H5F_close_degree_t degree) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t fapl; /* File access property list */ hid_t dsid; /* Dataset ID */ @@ -127,17 +127,17 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: test_dangle_group + * Function: test_dangle_group * - * Purpose: Check for dangling group IDs causing problems on library + * Purpose: Check for dangling group IDs causing problems on library * shutdown * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, May 13, 2003 * * Modifications: @@ -147,7 +147,7 @@ error: static int test_dangle_group(H5F_close_degree_t degree) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t fapl; /* File access property list */ hid_t gid; /* Group ID */ @@ -218,17 +218,17 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: test_dangle_datatype1 + * Function: test_dangle_datatype1 * - * Purpose: Check for dangling datatype IDs causing problems on library + * Purpose: Check for dangling datatype IDs causing problems on library * shutdown * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, May 13, 2003 * * Modifications: @@ -238,7 +238,7 @@ error: static int test_dangle_datatype1(H5F_close_degree_t degree) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t fapl; /* File access property list */ hid_t tid; /* Datatype ID */ @@ -314,17 +314,17 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: test_dangle_datatype2 + * Function: test_dangle_datatype2 * - * Purpose: Check for dangling datatype IDs causing problems on library + * Purpose: Check for dangling datatype IDs causing problems on library * shutdown * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, August 25, 2005 * * Modifications: @@ -334,7 +334,7 @@ error: static int test_dangle_datatype2(H5F_close_degree_t degree) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t fapl; /* File access property list */ hid_t did; /* Dataset ID */ @@ -401,17 +401,17 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: test_dangle_attribute + * Function: test_dangle_attribute * - * Purpose: Check for dangling attribute IDs causing problems on library + * Purpose: Check for dangling attribute IDs causing problems on library * shutdown * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Wednesday, June 18, 2003 * * Modifications: @@ -421,7 +421,7 @@ error: static int test_dangle_attribute(H5F_close_degree_t degree) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t fapl; /* File access property list */ hid_t dsid; /* Dataset ID */ @@ -508,17 +508,17 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: test_dangle_force + * Function: test_dangle_force * - * Purpose: Shut down all danging IDs with generic file & ID routines, + * Purpose: Shut down all danging IDs with generic file & ID routines, * instead of letting library shut then down. * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Friday, October 29, 2010 * *------------------------------------------------------------------------- @@ -526,7 +526,7 @@ error: static int test_dangle_force(void) { - char filename[1024]; + char filename[1024]; hid_t fid; /* File ID */ hid_t gid, gid2; /* Group IDs */ hid_t dsid, dsid2; /* Dataset IDs */ @@ -624,7 +624,7 @@ test_dangle_force(void) /* Release object ID array */ HDfree(objs); - + PASSED(); return 0; @@ -634,16 +634,16 @@ error: return 1; } - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Executes dangling ID tests + * Purpose: Executes dangling ID tests * - * Return: Success: zero - * Failure: non-zero + * Return: Success: zero + * Failure: non-zero * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, May 13, 2003 * * Modifications: @@ -653,7 +653,7 @@ error: int main(void) { - int nerrors=0; + int nerrors=0; /* Run tests w/weak file close */ puts("Testing dangling objects with weak file close:"); diff --git a/test/dsets.c b/test/dsets.c index 0fff2d1..0788bc8 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -24,8 +24,30 @@ #define H5Z_FRIEND /*suppress error about including H5Zpkg */ -#include "h5test.h" +#include "testhdf5.h" #include "H5srcdir.h" + +#include "H5Bprivate.h" +#include "H5Iprivate.h" +#include "H5Pprivate.h" + +#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_TESTING +#include "H5Fpkg.h" /* File access */ + +#define H5S_FRIEND /*suppress error about including H5Spkg */ +#include "H5Spkg.h" /* Dataspace */ + +#define H5T_FRIEND /*suppress error about including H5Tpkg */ +#include "H5Tpkg.h" /* Datatype */ + +#define H5A_FRIEND /*suppress error about including H5Apkg */ +#include "H5Apkg.h" /* Attributes */ + +/* Use in version bound test */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#include "H5Opkg.h" /* Object headers */ + #include "H5Dpkg.h" #include "H5FDpkg.h" #include "H5VMprivate.h" @@ -60,8 +82,10 @@ const char *FILENAME[] = { "storage_size", /* 22 */ "dls_01_strings", /* 23 */ "power2up", /* 24 */ + "version_bounds", /* 25 */ NULL }; + #define FILENAME_BUF_SIZE 1024 #define KB 1024 @@ -291,7 +315,7 @@ const H5Z_class2_t H5Z_COUNT[1] = {{ filter_count, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: filter_count * @@ -316,7 +340,7 @@ filter_count(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, return nbytes; } - + /*------------------------------------------------------------------------- * Function: test_create * @@ -463,7 +487,7 @@ test_create(hid_t file) return -1; } - + /*------------------------------------------------------------------------- * Function: test_simple_io * @@ -599,7 +623,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_userblock_offset * @@ -705,7 +729,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_compact_io * @@ -722,10 +746,15 @@ static herr_t test_compact_io(hid_t fapl) { hid_t file, dataset, space, plist; + hid_t verfile = -1, new_fapl = -1; hsize_t dims[2]; int wbuf[16][8], rbuf[16][8]; char filename[FILENAME_BUF_SIZE]; - int i, j, n; + H5F_libver_t low, high; /* File format bounds */ + H5F_t *fp; /* Internal file pointer */ + H5D_t *dsetp; /* Internal dataset pointer */ + int i, j, n; /* Indices */ + herr_t ret; /* Generic return value */ TESTING("compact dataset I/O"); @@ -764,8 +793,6 @@ test_compact_io(hid_t fapl) if(H5Dget_offset(dataset)!=HADDR_UNDEF) TEST_ERROR /* Close file */ - if(H5Sclose(space) < 0) TEST_ERROR - if(H5Pclose(plist) < 0) TEST_ERROR if(H5Dclose(dataset) < 0) TEST_ERROR if(H5Fclose(file) < 0) TEST_ERROR @@ -789,19 +816,113 @@ test_compact_io(hid_t fapl) printf(" wbuf[%d][%d]=%d\n", i, j, wbuf[i][j]); printf(" rbuf[%d][%d]=%d\n", i, j, rbuf[i][j]); goto error; - } /* end if */ + } /* end */ if(H5Dclose(dataset) < 0) TEST_ERROR if(H5Fclose(file) < 0) TEST_ERROR - PASSED(); - return 0; + /************************************** + * Additional test for version bounds * + **************************************/ + + /* Create a copy of file access property list */ + if((new_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR + + /* Loop through all the combinations of low/high library format bounds, + skipping invalid combinations. + - Create a file, create and write a compact dataset, and verify its data + - Verify the dataset's layout and fill message versions */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + /* Set version bounds */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Create a file */ + h5_fixname(FILENAME[25], new_fapl, filename, sizeof filename); + if((verfile = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, new_fapl)) < 0) + TEST_ERROR + + /* Create the compact dataset */ + dataset = H5Dcreate2(verfile, DSET_DEFAULT_NAME, H5T_NATIVE_INT, space, H5P_DEFAULT, plist, H5P_DEFAULT); + if(dataset < 0) TEST_ERROR + + /* Write the same data as of DSET_COMPACT_IO_NAME */ + if(H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf) < 0) + TEST_ERROR + + /* Close DSET_DEFAULT_NAME, then reopen it to read and verify + the data */ + if(H5Dclose(dataset) < 0) TEST_ERROR + if((dataset = H5Dopen2(verfile, DSET_DEFAULT_NAME, H5P_DEFAULT)) < 0) + TEST_ERROR + if(H5Dread(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf) < 0) + TEST_ERROR + + /* Check that the values read are the same as the values written */ + for(i = 0; i < 16; i++) + for(j = 0; j < 8; j++) + if(rbuf[i][j] != wbuf[i][j]) { + H5_FAILED(); + printf(" Read different values than written.\n"); + printf(" At index %d,%d\n", i, j); + printf(" wbuf[%d][%d]=%d\n", i, j, wbuf[i][j]); + printf(" rbuf[%d][%d]=%d\n", i, j, rbuf[i][j]); + goto error; + } /* end */ + + /* Get the internal file pointer */ + if((fp = (H5F_t *)H5I_object(verfile)) == NULL) TEST_ERROR + + /* Get the internal dataset pointer */ + if((dsetp = (H5D_t *)H5I_object(dataset)) == NULL) TEST_ERROR + + /* Verify the dataset's layout and fill message versions */ + if(fp->shared->low_bound == H5F_LIBVER_EARLIEST) { + VERIFY(dsetp->shared->layout.version, H5O_LAYOUT_VERSION_DEFAULT, "layout_ver_bounds"); + VERIFY(dsetp->shared->dcpl_cache.fill.version, H5O_FILL_VERSION_2, "fill_ver_bounds"); + } else { + VERIFY(dsetp->shared->layout.version, H5O_layout_ver_bounds[fp->shared->low_bound], "layout_ver_bounds"); + VERIFY(dsetp->shared->dcpl_cache.fill.version, H5O_fill_ver_bounds[fp->shared->low_bound], "fill_ver_bounds"); + } + + /* Close the dataset and delete from the file */ + if(H5Dclose(dataset) < 0) TEST_ERROR + if(H5Ldelete(verfile, DSET_DEFAULT_NAME, H5P_DEFAULT) < 0) + TEST_ERROR + + /* Close the file */ + if(H5Fclose(verfile) < 0) TEST_ERROR + + } /* end for high */ + } /* end for low */ + + if(H5Pclose(new_fapl) < 0) TEST_ERROR + if(H5Sclose(space) < 0) TEST_ERROR + if(H5Pclose(plist) < 0) TEST_ERROR + + PASSED(); + return 0; error: - return -1; + H5E_BEGIN_TRY { + H5Sclose(space); + H5Pclose(plist); + H5Pclose(new_fapl); + H5Dclose(dataset); + H5Fclose(file); + H5Fclose(verfile); + } H5E_END_TRY; + + return -1; } - + /*------------------------------------------------------------------------- * Function: test_max_compact * @@ -954,7 +1075,7 @@ error: return -1; } /* end test_max_compact() */ - + /*------------------------------------------------------------------------- * Function: test_layout_extend * @@ -1077,7 +1198,7 @@ error: return -1; } /* end test_layout_extend() */ - + /*------------------------------------------------------------------------- * Function: test_conv_buffer * @@ -1216,7 +1337,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_tconv * @@ -1311,7 +1432,7 @@ const H5Z_class2_t H5Z_BOGUS[1] = {{ filter_bogus, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: can_apply_bogus * @@ -1333,7 +1454,7 @@ can_apply_bogus(hid_t H5_ATTR_UNUSED dcpl_id, hid_t type_id, hid_t H5_ATTR_UNUSE return -1; } - + /*------------------------------------------------------------------------- * Function: filter_bogus * @@ -1351,7 +1472,7 @@ filter_bogus(unsigned int H5_ATTR_UNUSED flags, size_t H5_ATTR_UNUSED cd_nelmts, return nbytes; } - + /*------------------------------------------------------------------------- * Function: set_local_bogus2 * @@ -1397,7 +1518,7 @@ set_local_bogus2(hid_t dcpl_id, hid_t type_id, hid_t H5_ATTR_UNUSED space_id) return(SUCCEED); } /* end set_local_bogus2() */ - + /*------------------------------------------------------------------------- * Function: filter_bogus2 * @@ -1451,7 +1572,7 @@ filter_bogus2(unsigned int flags, size_t cd_nelmts, return(nbytes); } - + /*------------------------------------------------------------------------- * Function: filter_bogus3 * @@ -1480,7 +1601,7 @@ const H5Z_class2_t H5Z_CORRUPT[1] = {{ filter_corrupt, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: filter_corrupt * @@ -1539,7 +1660,7 @@ error: return ret_value; } /* end filter_corrupt() */ - + /*------------------------------------------------------------------------- * Function: filter_cb_cont * @@ -1558,7 +1679,7 @@ filter_cb_cont(H5Z_filter_t filter, void H5_ATTR_UNUSED *buf, size_t H5_ATTR_UNU return H5Z_CB_FAIL; } - + /*------------------------------------------------------------------------- * Function: filter_cb_fail * @@ -1577,7 +1698,7 @@ filter_cb_fail(H5Z_filter_t filter, void H5_ATTR_UNUSED *buf, size_t H5_ATTR_UNU return H5Z_CB_CONT; } - + /*------------------------------------------------------------------------- * Function: test_filter_internal * @@ -2388,7 +2509,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_missing_filter * @@ -2716,7 +2837,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_int * @@ -2834,7 +2955,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_float * @@ -2952,7 +3073,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_double * @@ -3084,7 +3205,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_array * @@ -3211,7 +3332,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_compound * @@ -3428,7 +3549,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_compound_2 * @@ -3773,7 +3894,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_compound_3 * @@ -3953,7 +4074,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_int_size * @@ -4120,7 +4241,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_nbit_flt_size * @@ -4316,7 +4437,7 @@ test_nbit_flt_size(hid_t file) error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_int * @@ -4428,7 +4549,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_int_2 * @@ -4556,7 +4677,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_float * @@ -4669,7 +4790,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_float_2 * @@ -4798,7 +4919,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_double * @@ -4911,7 +5032,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_scaleoffset_double_2 * @@ -5041,20 +5162,20 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_multiopen * - * Purpose: Tests that a bug no longer exists. If a dataset is opened - * twice and one of the handles is used to extend the dataset, - * then the other handle should return the new size when - * queried. + * Purpose: Tests that a bug no longer exists. If a dataset is opened + * twice and one of the handles is used to extend the dataset, + * then the other handle should return the new size when + * queried. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, June 9, 1998 * *------------------------------------------------------------------------- @@ -5062,10 +5183,10 @@ error: static herr_t test_multiopen (hid_t file) { - hid_t dcpl = -1, space = -1, dset1 = -1, dset2 = -1; - hsize_t cur_size[1] = {10}; - static hsize_t max_size[1] = {H5S_UNLIMITED}; - hsize_t tmp_size[1]; + hid_t dcpl = -1, space = -1, dset1 = -1, dset2 = -1; + hsize_t cur_size[1] = {10}; + hsize_t tmp_size[1]; + static hsize_t max_size[1] = {H5S_UNLIMITED}; TESTING("multi-open with extending"); @@ -5085,9 +5206,9 @@ test_multiopen (hid_t file) if((space = H5Dget_space(dset2)) < 0) goto error; if(H5Sget_simple_extent_dims(space, tmp_size, NULL) < 0) goto error; if(cur_size[0] != tmp_size[0]) { - H5_FAILED(); - printf(" Got %d instead of %d!\n", (int)tmp_size[0], (int)cur_size[0]); - goto error; + H5_FAILED(); + printf(" Got %d instead of %d!\n", (int)tmp_size[0], (int)cur_size[0]); + goto error; } /* end if */ if(H5Dclose(dset1) < 0) goto error; @@ -5108,7 +5229,7 @@ test_multiopen (hid_t file) return -1; } - + /*------------------------------------------------------------------------- * Function: test_types * @@ -5215,7 +5336,7 @@ const H5Z_class2_t H5Z_CAN_APPLY_TEST[1] = {{ filter_bogus, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: test_can_apply * @@ -5396,7 +5517,7 @@ const H5Z_class2_t H5Z_CAN_APPLY_TEST2[1] = {{ filter_bogus3, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: test_can_apply2 * @@ -5545,7 +5666,7 @@ error: } /* end test_can_apply2() */ - + /*------------------------------------------------------------------------- * Function: test_can_apply_szip * @@ -5750,7 +5871,7 @@ const H5Z_class2_t H5Z_SET_LOCAL_TEST[1] = {{ filter_bogus2, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: test_set_local * @@ -6015,7 +6136,7 @@ error: return -1; } /* end test_set_local() */ - + /*------------------------------------------------------------------------- * Function: test_compare_dcpl * @@ -6100,7 +6221,7 @@ error: return -1; } /* end test_compare_dcpl() */ - + /*------------------------------------------------------------------------- * Function: test_copy_dcpl * @@ -6232,7 +6353,7 @@ error: return -1; } /* end test_copy_dcpl() */ - + /*------------------------------------------------------------------------- * Function: test_filter_delete * @@ -6359,7 +6480,7 @@ error: } /* end test_filter_delete() */ - + /*------------------------------------------------------------------------- * Function: auxread_fdata * @@ -6443,7 +6564,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: test_filters_endianess * @@ -6513,7 +6634,7 @@ error: return -1; } /* end test_filters_endianess() */ - + /*------------------------------------------------------------------------- * Function: test_zero_dims * @@ -6677,7 +6798,7 @@ error: return -1; } /* end test_zero_dims() */ - + /*------------------------------------------------------------------------- * Function: test_missing_chunk * @@ -6869,7 +6990,7 @@ error: return -1; } /* end test_missing_chunk() */ - + /*------------------------------------------------------------------------- * Function: test_random_chunks_real * @@ -7237,7 +7358,7 @@ error: return -1; } /* end test_random_chunks_real() */ - + /*------------------------------------------------------------------------- * Function: test_random_chunks * @@ -7297,7 +7418,7 @@ const H5Z_class1_t H5Z_DEPREC[1] = {{ filter_bogus, /* The actual filter function */ }}; - + /*------------------------------------------------------------------------- * Function: test_deprec * @@ -7488,7 +7609,7 @@ test_deprec(hid_t file) } /* end test_deprec() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ - + /*------------------------------------------------------------------------- * Function: test_huge_chunks * @@ -7600,7 +7721,7 @@ error: return -1; } /* end test_huge_chunks() */ - + /*------------------------------------------------------------------------- * Function: test_chunk_cache * @@ -7808,7 +7929,7 @@ error: return -1; } /* end test_chunk_cache() */ - + /*------------------------------------------------------------------------- * Function: test_big_chunks_bypass_cache * @@ -8101,7 +8222,7 @@ error: return -1; } /* end test_big_chunks_bypass_cache() */ - + /*------------------------------------------------------------------------- * Function: test_chunk_fast * @@ -8448,7 +8569,7 @@ error: return -1; } /* end test_chunk_fast() */ - + /*------------------------------------------------------------------------- * Function: test_reopen_chunk_fast * @@ -8571,7 +8692,7 @@ error: return -1; } /* end test_reopen_chunk_fast() */ - + /*------------------------------------------------------------------------- * Function: test_chunk_fast_bug1 * @@ -8693,7 +8814,7 @@ const H5Z_class2_t H5Z_EXPAND[1] = {{ /* Global "expansion factor" for filter_expand() routine */ static size_t filter_expand_factor_g = 0; - + /*------------------------------------------------------------------------- * Function: filter_expand * @@ -8742,7 +8863,7 @@ filter_expand(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, return ret_value; } /* end filter_expand() */ - + /*------------------------------------------------------------------------- * Function: test_chunk_expand * @@ -9138,7 +9259,7 @@ error: return -1; } /* end test_chunk_expand() */ - + /*------------------------------------------------------------------------- * Function: test_fixed_array * @@ -9557,7 +9678,7 @@ error: return -1; } /* end test_fixed_array() */ - + /*------------------------------------------------------------------------- * Function: test_single_chunk * @@ -9790,6 +9911,7 @@ test_single_chunk(hid_t fapl) } /* end for */ #endif /* H5_HAVE_FILTER_DEFLATE */ + /* Release buffers */ HDfree(wbuf); HDfree(rbuf); @@ -9820,7 +9942,7 @@ error: return -1; } /* end test_single_chunk() */ - + /*------------------------------------------------------------------------- * * test_idx_compatible(): @@ -10033,7 +10155,7 @@ error: return -1; } /* test_unfiltered_edge_chunks */ - + /*------------------------------------------------------------------------- * Function: test_large_chunk_shrink * @@ -10148,11 +10270,11 @@ error: return -1; } /* end test_large_chunk_shrink() */ - + /*------------------------------------------------------------------------- * Function: test_zero_dim_dset * - * Purpose: Tests support for reading a 1D chunled dataset with + * Purpose: Tests support for reading a 1D chunked dataset with * dimension size = 0. * * Return: Success: 0 @@ -10173,40 +10295,59 @@ test_zero_dim_dset(hid_t fapl) hid_t dsid = -1; /* Dataset ID */ hsize_t dim, chunk_dim; /* Dataset and chunk dimensions */ int data[1]; + H5F_libver_t low, high; /* File format bounds */ + herr_t ret; /* Generic return value */ - TESTING("shrinking large chunk"); + TESTING("chunked dataset with zero dimension"); - h5_fixname(FILENAME[16], fapl, filename, sizeof filename); + /* Loop through all the combinations of low/high library format bounds, + skipping invalid combination, and verify support for reading a 1D + chunked dataset with dimension size = 0 */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { - /* Create file */ - if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) FAIL_STACK_ERROR + /* Set version bounds before opening the file */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl, low, high); + } H5E_END_TRY; - /* Create dataset creation property list */ - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) FAIL_STACK_ERROR + if (ret < 0) /* Invalid low/high combinations */ + continue; - /* Set 1 chunk size */ - chunk_dim = 1; - if(H5Pset_chunk(dcpl, 1, &chunk_dim) < 0) FAIL_STACK_ERROR + h5_fixname(FILENAME[16], fapl, filename, sizeof filename); - /* Create 1D dataspace with 0 dim size */ - dim = 0; - if((sid = H5Screate_simple(1, &dim, NULL)) < 0) FAIL_STACK_ERROR + /* Create file */ + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) FAIL_STACK_ERROR - /* Create chunked dataset */ - if((dsid = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + /* Create dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) FAIL_STACK_ERROR - /* write 0 elements from dataset */ - if(H5Dwrite(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + /* Set 1 chunk size */ + chunk_dim = 1; + if(H5Pset_chunk(dcpl, 1, &chunk_dim) < 0) FAIL_STACK_ERROR - /* Read 0 elements from dataset */ - if(H5Dread(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + /* Create 1D dataspace with 0 dim size */ + dim = 0; + if((sid = H5Screate_simple(1, &dim, NULL)) < 0) FAIL_STACK_ERROR - /* Close everything */ - if(H5Sclose(sid) < 0) FAIL_STACK_ERROR - if(H5Dclose(dsid) < 0) FAIL_STACK_ERROR - if(H5Pclose(dcpl) < 0) FAIL_STACK_ERROR - if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + /* Create chunked dataset */ + if((dsid = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + FAIL_STACK_ERROR + + /* write 0 elements from dataset */ + if(H5Dwrite(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + + /* Read 0 elements from dataset */ + if(H5Dread(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + + /* Close everything */ + if(H5Sclose(sid) < 0) FAIL_STACK_ERROR + if(H5Dclose(dsid) < 0) FAIL_STACK_ERROR + if(H5Pclose(dcpl) < 0) FAIL_STACK_ERROR + if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + + } /* end for high */ + } /* end for low */ PASSED(); @@ -10222,7 +10363,7 @@ error: return -1; } /* end test_zero_dim_dset() */ - + /*------------------------------------------------------------------------- * Function: test_swmr_non_latest * @@ -10471,7 +10612,7 @@ error: return -1; } /* test_swmr_non_latest() */ - + /*------------------------------------------------------------------------- * Function: test_earray_hdr_fd * @@ -10591,7 +10732,7 @@ error: return -1; } /* test_earray_hdr_fd() */ - + /*------------------------------------------------------------------------- * Function: test_farray_hdr_fd * @@ -10711,7 +10852,7 @@ error: return -1; } /* test_farray_hdr_fd() */ - + /*------------------------------------------------------------------------- * Function: test_bt2_hdr_fd * @@ -10831,7 +10972,7 @@ error: return -1; } /* test_bt2_hdr_fd() */ - + /*------------------------------------------------------------------------- * Function: test_storage_size * @@ -11225,7 +11366,7 @@ error: return -1; } /* end test_storage_size() */ - + /*------------------------------------------------------------------------- * Function: test_power2up * @@ -11316,7 +11457,7 @@ error: return -1; } /* end test_power2up() */ - + /*------------------------------------------------------------------------- * Function: test_scatter * @@ -11634,7 +11775,7 @@ error: return -1; } /* end test_scatter() */ - + /*------------------------------------------------------------------------- * Function: test_gather * @@ -11996,7 +12137,7 @@ error: return -1; } /* end test_gather() */ - + /*------------------------------------------------------------------------- * Function: test_scatter_error * @@ -12199,7 +12340,7 @@ error: return -1; } /* end test_scatter_error() */ - + /*------------------------------------------------------------------------- * Function: test_gather_error * @@ -12726,36 +12867,188 @@ error: return -1; } /* test_compact_open_close_dirty() */ - + /*------------------------------------------------------------------------- - * Function: main + * Function: test_versionbounds * - * Purpose: Tests the dataset interface (H5D) + * Purpose: Tests various format versions. + * (Currently, only virtual dataset feature) + * + * Return: Success: 0 + * Failure: -1 + * Description: + * This function attempts to create a virtual dataset in all + * valid combinations of low/high library format bounds. Creation + * of virtual dataset should only succeed in H5F_LIBVER_V110. + * -BMR, January 2018 + * + *------------------------------------------------------------------------- + */ +#define VDS_FNAME1 "virtual_file1" +#define VDS_FNAME2 "virtual_file2" +#define SRC_FNAME "source_file" +#define SRC_DSET "src_dset" +#define V_DSET "v_dset" +static herr_t +test_versionbounds() +{ + hid_t fapl = -1; + hid_t srcfile = -1; /* Files with source dsets */ + hid_t vfile = -1; /* File with virtual dset */ + hid_t dcpl = -1; /* Dataset creation property list */ + hid_t srcspace = -1; /* Source dataspaces */ + hid_t vspace = -1; /* Virtual dset dataspaces */ + hid_t srcdset = -1; /* Source datset */ + hid_t vdset = -1; /* Virtual dataset */ + hid_t null_dspace = -1; /* Data space of H5S_NULL */ + hsize_t dims[1] = {3}; /* Data space current size */ + char srcfilename[FILENAME_BUF_SIZE]; + char vfilename1[FILENAME_BUF_SIZE]; + char vfilename2[FILENAME_BUF_SIZE]; + H5F_libver_t low, high; /* File format bounds */ + herr_t ret; /* Generic return value */ + + TESTING("version bounds of datasets"); + + /* Create a copy of file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR + + h5_fixname(VDS_FNAME1, fapl, vfilename1, sizeof vfilename1); + h5_fixname(VDS_FNAME2, fapl, vfilename2, sizeof vfilename2); + h5_fixname(SRC_FNAME, fapl, srcfilename, sizeof srcfilename); + + /* Create DCPL */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + TEST_ERROR + + /* Clear virtual layout in DCPL */ + if(H5Pset_layout(dcpl, H5D_VIRTUAL) < 0) + TEST_ERROR + + /* Create source dataspace */ + if((srcspace = H5Screate_simple(1, dims, NULL)) < 0) + TEST_ERROR + + /* Create virtual dataspace */ + if((vspace = H5Screate_simple(1, dims, NULL)) < 0) + TEST_ERROR + + /* Add virtual layout mapping */ + if(H5Pset_virtual(dcpl, vspace, srcfilename, SRC_DSET, srcspace) < 0) + TEST_ERROR + + /* Loop through all the combinations of low/high library format bounds */ + /* Create a source file and a dataset in it. Create a virtual file and + virtual dataset. Creation of virtual dataset should only succeed in + H5F_LIBVER_V110 */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + /* Set version bounds, skip for invalid low/high combination */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Create a source file and dataset */ + if((srcfile = H5Fcreate(srcfilename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + TEST_ERROR + if((srcdset = H5Dcreate2(srcfile, SRC_DSET, H5T_NATIVE_INT, srcspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + TEST_ERROR + + /* Create a virtual file */ + if((vfile = H5Fcreate(vfilename1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + TEST_ERROR + + /* Create the virtual dataset */ + H5E_BEGIN_TRY { + vdset = H5Dcreate2(vfile, V_DSET, H5T_NATIVE_INT, vspace, H5P_DEFAULT, dcpl, H5P_DEFAULT); + } H5E_END_TRY; + + if (vdset > 0) /* dataset created successfully */ + { + /* Virtual dataset is only available starting in V110 */ + VERIFY(high, H5F_LIBVER_V110, "virtual dataset"); + + if(H5Dclose(vdset) < 0) TEST_ERROR + vdset = -1; + } + + /* Close virtual file */ + if(H5Fclose(vfile) < 0) TEST_ERROR + vfile = -1; + + /* Close srcdset and srcfile */ + if(H5Dclose(srcdset) < 0) TEST_ERROR + srcdset = -1; + + if(H5Fclose(srcfile) < 0) TEST_ERROR + srcfile = -1; + + } /* for high */ + } /* for low */ + + /* Close dataspaces and properties */ + if(H5Sclose(srcspace) < 0) + TEST_ERROR + srcspace = -1; + if(H5Sclose(vspace) < 0) + TEST_ERROR + vspace = -1; + if(H5Pclose(fapl) < 0) + TEST_ERROR + fapl = -1; + if(H5Pclose(dcpl) < 0) + TEST_ERROR + dcpl = -1; + PASSED(); + return 0; + + error: + H5E_BEGIN_TRY { + H5Sclose(srcspace); + H5Sclose(vspace); + H5Pclose(dcpl); + H5Pclose(fapl); + H5Dclose(srcdset); + H5Dclose(vdset); + H5Fclose(srcfile); + H5Fclose(vfile); + } H5E_END_TRY; + return -1; +} /* test_versionbounds() */ + + +/*------------------------------------------------------------------------- + * Function: main * - * Return: Success: exit(EXIT_SUCCESS) + * Purpose: Tests the dataset interface (H5D) * - * Failure: exit(EXIT_FAILURE) + * Return: Success: exit(EXIT_SUCCESS) + * Failure: exit(EXIT_FAILURE) * - * Programmer: Robb Matzke - * Tuesday, December 9, 1997 + * Programmer: Robb Matzke + * Tuesday, December 9, 1997 * *------------------------------------------------------------------------- */ int main(void) { - char filename[FILENAME_BUF_SIZE]; - hid_t file, grp, fapl, fapl2; - hid_t fcpl = -1, fcpl2 = -1; + char filename[FILENAME_BUF_SIZE]; + hid_t file, grp, fapl, fapl2; + hid_t fcpl = -1, fcpl2 = -1; unsigned new_format; unsigned paged; - int mdc_nelmts; - size_t rdcc_nelmts; - size_t rdcc_nbytes; - double rdcc_w0; - int nerrors = 0; + int mdc_nelmts; + size_t rdcc_nelmts; + size_t rdcc_nbytes; + double rdcc_w0; + int nerrors = 0; const char *envval; - hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ + hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ /* Don't run this test using certain file drivers */ envval = HDgetenv("HDF5_DRIVER"); @@ -12924,6 +13217,9 @@ main(void) nerrors += (test_scatter_error() < 0 ? 1 : 0); nerrors += (test_gather_error() < 0 ? 1 : 0); + /* Tests version bounds using its own file */ + nerrors += (test_versionbounds() < 0 ? 1 : 0); + /* Run misc tests */ nerrors += dls_01_main(); diff --git a/test/dtypes.c b/test/dtypes.c index 7e8047d..1a27634 100644 --- a/test/dtypes.c +++ b/test/dtypes.c @@ -18,7 +18,7 @@ * Purpose: Tests the datatype interface (H5T) */ -#include "h5test.h" +#include "testhdf5.h" #include "H5srcdir.h" #include "H5Iprivate.h" /* For checking that datatype id's don't leak */ @@ -46,6 +46,16 @@ #define H5T_FRIEND /*suppress error about including H5Tpkg */ #include "H5Tpkg.h" #endif + +/* Use in version bound test */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_TESTING +#include "H5Fpkg.h" /* File access */ + +/* Use in version bound test */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#include "H5Opkg.h" /* Object headers */ + #define SET_ALIGNMENT(TYPE,VAL) \ H5T_NATIVE_##TYPE##_ALIGN_g=MAX(H5T_NATIVE_##TYPE##_ALIGN_g, VAL) @@ -92,7 +102,15 @@ typedef enum dtype_t { INT_SCHAR, INT_UCHAR, INT_SHORT, INT_USHORT, INT_INT, INT_UINT, INT_LONG, INT_ULONG, INT_LLONG, INT_ULLONG, FLT_FLOAT, FLT_DOUBLE, FLT_LDOUBLE, OTHER -} dtype_t; +} dtype_t; /* This doesn't seem to be used anywhere... -BMR */ + +typedef enum { + E1_RED, + E1_GREEN, + E1_BLUE, + E1_ORANGE, + E1_YELLOW +} color_t; /* Constant for size of conversion buffer for int <-> float exception test */ #define CONVERT_SIZE 4 @@ -1678,7 +1696,7 @@ test_compound_9(void) { typedef struct cmpd_struct { int i1; - char* str; + const char* str; int i2; } cmpd_struct; @@ -2526,7 +2544,7 @@ test_compound_14(void) typedef struct cmpd_struct_1 { char c1; char c2; - char* str; + const char* str; } cmpd_struct_1; typedef struct cmpd_struct_2 { @@ -3299,7 +3317,7 @@ test_compound_18(void) /* Create compound datatype, but don't insert fields */ tid = H5Tcreate(H5T_COMPOUND, (size_t)8); - assert(tid > 0); + HDassert(tid > 0); /* Attempt to create file with compound datatype that has no fields */ /* Create File */ @@ -3308,7 +3326,7 @@ test_compound_18(void) /* Create a dataspace to use */ sid = H5Screate_simple(1, &dim, NULL); - assert(sid > 0); + HDassert(sid > 0); /* Create a dataset with the bad compound datatype */ H5E_BEGIN_TRY { @@ -3321,7 +3339,7 @@ test_compound_18(void) /* Create a group */ gid = H5Gcreate2(file, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(gid > 0); + HDassert(gid > 0); /* Create an attribute with the bad compound datatype */ H5E_BEGIN_TRY { @@ -4672,7 +4690,7 @@ test_conv_enum_2(void) /* Destination enum type */ dsttype = H5Tenum_create(H5T_NATIVE_INT); - assert(H5Tget_size(dsttype) > H5Tget_size(srctype)); + HDassert(H5Tget_size(dsttype) > H5Tget_size(srctype)); for (i=0; i<8; i++) H5Tenum_insert(dsttype, mname[i], &i); @@ -6682,7 +6700,7 @@ error: } /* end test_named_indirect_reopen() */ static void create_del_obj_named_test_file(const char *filename, hid_t fapl, - hbool_t new_format) + H5F_libver_t low, H5F_libver_t high) { hid_t file; /* File ID */ hid_t type; /* Datatype ID */ @@ -6692,93 +6710,97 @@ static void create_del_obj_named_test_file(const char *filename, hid_t fapl, hid_t fcpl; /* File creation property list ID */ hid_t my_fapl; /* Copy of file access property list ID */ hid_t dcpl; /* Dataset creation property list ID */ + unsigned use_at_least_v18;/* Whether to use old or new format */ herr_t status; /* Generic return value */ /* Make copy of FAPL */ my_fapl = H5Pcopy(fapl); - assert(my_fapl > 0); + HDassert(my_fapl > 0); - if(new_format) { - /* Use latest version of file format */ - status = H5Pset_libver_bounds(my_fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); - assert(status >= 0); - } /* end if */ + /* Use low/high version of file format */ + status = H5Pset_libver_bounds(my_fapl, low, high); + HDassert(status >= 0); + + /* Set new format flag. Note: the case high < low should be caught in the caller */ + use_at_least_v18 = 0; + if (low >= H5F_LIBVER_V18) + use_at_least_v18 = 1; /* Create a file creation property list (used for the root group's creation property list) */ fcpl = H5Pcreate(H5P_FILE_CREATE); - assert(fcpl > 0); + HDassert(fcpl > 0); - if(new_format) { + if(use_at_least_v18) { /* Use dense link storage for all links in root group */ status = H5Pset_link_phase_change(fcpl, 0, 0); - assert(status >= 0); + HDassert(status >= 0); } /* end if */ /* Create file with attribute that uses committed datatype */ file = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, my_fapl); - assert(file > 0); + HDassert(file > 0); /* Close FCPL */ status = H5Pclose(fcpl); - assert(status >= 0); + HDassert(status >= 0); /* Close FAPL */ status = H5Pclose(my_fapl); - assert(status >= 0); + HDassert(status >= 0); /* Create datatype to commit */ type = H5Tvlen_create(H5T_NATIVE_INT); - assert(type > 0); + HDassert(type > 0); /* Commit datatype */ status = H5Tcommit2(file, DEL_OBJ_NAMED_NAMED_DTYPE, type, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(status >= 0); + HDassert(status >= 0); /* Create scalar dataspace */ space = H5Screate(H5S_SCALAR); - assert(space > 0); + HDassert(space > 0); /* Create a dataset creation property list */ dcpl = H5Pcreate(H5P_DATASET_CREATE); - assert(dcpl > 0); + HDassert(dcpl > 0); - if(new_format) { + if(use_at_least_v18) { /* Use dense attribute storage for all attributes on dataset */ status = H5Pset_attr_phase_change(dcpl, 0, 0); - assert(status >= 0); + HDassert(status >= 0); } /* end if */ /* Create dataset */ dset = H5Dcreate2(file, DEL_OBJ_NAMED_DATASET, type, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); - assert(dset > 0); + HDassert(dset > 0); /* Close DCPL */ status = H5Pclose(dcpl); - assert(status >= 0); + HDassert(status >= 0); /* Close dataset */ status = H5Dclose(dset); - assert(status >= 0); + HDassert(status >= 0); /* Create attribute */ attr = H5Acreate_by_name(file, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, type, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - assert(attr > 0); + HDassert(attr > 0); /* Close dataspace */ status = H5Sclose(space); - assert(status >= 0); + HDassert(status >= 0); /* Close datatype */ status = H5Tclose(type); - assert(status >= 0); + HDassert(status >= 0); /* Close attribute */ status = H5Aclose(attr); - assert(status >= 0); + HDassert(status >= 0); /* Close file */ status = H5Fclose(file); - assert(status >= 0); + HDassert(status >= 0); } /* end create_del_obj_named_test_file() */ @@ -6803,7 +6825,7 @@ test_delete_obj_named(hid_t fapl) hid_t attr = -1; /* Attribute ID */ hid_t dset = -1; /* Dataset ID */ hid_t fapl2 = -1; /* File access property list ID */ - unsigned new_format; /* Whether to use old or new format */ + H5F_libver_t low, high; /* File format bounds */ char filename[1024], filename2[1024]; TESTING("deleting objects that use named datatypes"); @@ -6813,47 +6835,54 @@ test_delete_obj_named(hid_t fapl) h5_fixname(FILENAME[8], fapl, filename, sizeof filename); h5_fixname(FILENAME[9], fapl2, filename2, sizeof filename2); - /* Loop over old & new format files */ - for(new_format = FALSE; new_format <= TRUE; new_format++) { - /* Create test file, with attribute that uses committed datatype */ - create_del_obj_named_test_file(filename, fapl, new_format); + /* Loop through all valid the combinations of low/high library format bounds, + to test delete objects that use named datatypes through different file IDs */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { -/* Test deleting dataset opened through different file ID */ - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + /* Skip invalid low/high combination */ + if ((high == H5F_LIBVER_EARLIEST) || (low > high)) + continue; - if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Dclose(dset) < 0) FAIL_STACK_ERROR + /* Create test file, with attribute that uses committed datatype */ + create_del_obj_named_test_file(filename, fapl, low, high); - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + /* Test deleting dataset opened through different file ID */ + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR + if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Dclose(dset) < 0) FAIL_STACK_ERROR - if(H5Ldelete(filea2, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR - if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR + if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR + if(H5Ldelete(filea2, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT) < 0) FAIL_STACK_ERROR - /* Create test file, with attribute that uses committed datatype */ - create_del_obj_named_test_file(filename, fapl, new_format); + if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR + if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR -/* Test deleting attribute opened through different file ID */ - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + /* Create test file, with attribute that uses committed datatype */ + create_del_obj_named_test_file(filename, fapl, low, high); - if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Aclose(attr) < 0) FAIL_STACK_ERROR + /* Test deleting attribute opened through different file ID */ + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if(H5Aclose(attr) < 0) FAIL_STACK_ERROR - if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if(H5Adelete_by_name(filea2, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR - if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR - if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR - } /* end for */ + if(H5Adelete_by_name(filea2, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT) < 0) FAIL_STACK_ERROR + + if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR + if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR + } /* end high */ + } /* end low */ if(H5Pclose(fapl2) < 0) FAIL_STACK_ERROR @@ -6898,7 +6927,7 @@ test_delete_obj_named_fileid(hid_t fapl) hid_t attr = -1; /* Attribute ID */ hid_t dset = -1; /* Dataset ID */ hid_t fapl2 = -1; /* File access property list ID */ - unsigned new_format; /* Whether to use old or new format */ + H5F_libver_t low, high; /* File format bounds */ char filename[1024], filename2[1024]; TESTING("deleting objects that use named datatypes"); @@ -6908,108 +6937,115 @@ test_delete_obj_named_fileid(hid_t fapl) h5_fixname(FILENAME[8], fapl, filename, sizeof filename); h5_fixname(FILENAME[9], fapl2, filename2, sizeof filename2); - /* Loop over old & new format files */ - for(new_format = FALSE; new_format <= TRUE; new_format++) { - /* Create test file, with attribute that uses committed datatype */ - create_del_obj_named_test_file(filename, fapl, new_format); + /* Loop through all the combinations of low/high library format bounds */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { -/* Test getting file ID for dataset opened through different file ID */ - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + /* Skip invalid low/high combination */ + if ((high == H5F_LIBVER_EARLIEST) || (low > high)) + continue; - if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + /* Create test file, with attribute that uses committed datatype */ + create_del_obj_named_test_file(filename, fapl, low, high); - if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + /* Test getting file ID for dataset opened through different file ID */ + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - /* Verify file ID from dataset matches correct file */ - dset_fid = H5Iget_file_id(dset); - if(dset_fid != filea1) TEST_ERROR - H5Fclose(dset_fid); + if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - /* Verify file ID from datatype (from dataset) matches correct file */ - type = H5Dget_type(dset); - type_fid = H5Iget_file_id(type); - if(type_fid != filea1) TEST_ERROR - H5Fclose(type_fid); - H5Tclose(type); + if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Dclose(dset) < 0) FAIL_STACK_ERROR + /* Verify file ID from dataset matches correct file */ + dset_fid = H5Iget_file_id(dset); + if(dset_fid != filea1) TEST_ERROR + H5Fclose(dset_fid); - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + /* Verify file ID from datatype (from dataset) matches correct file */ + type = H5Dget_type(dset); + type_fid = H5Iget_file_id(type); + if(type_fid != filea1) TEST_ERROR + H5Fclose(type_fid); + H5Tclose(type); - if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR + if(H5Dclose(dset) < 0) FAIL_STACK_ERROR - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR - /* Verify file ID from dataset matches correct file */ - dset_fid = H5Iget_file_id(dset); - if(dset_fid != filea1) TEST_ERROR - H5Fclose(dset_fid); + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - /* Verify file ID from datatype (from dataset) matches correct file */ - type = H5Dget_type(dset); - type_fid = H5Iget_file_id(type); - if(type_fid != filea1) TEST_ERROR - H5Fclose(type_fid); - H5Tclose(type); + if((dset = H5Dopen2(filea1, DEL_OBJ_NAMED_DATASET, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Dclose(dset) < 0) FAIL_STACK_ERROR + /* Verify file ID from dataset matches correct file */ + dset_fid = H5Iget_file_id(dset); + if(dset_fid != filea1) TEST_ERROR + H5Fclose(dset_fid); - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR - if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR + /* Verify file ID from datatype (from dataset) matches correct file */ + type = H5Dget_type(dset); + type_fid = H5Iget_file_id(type); + if(type_fid != filea1) TEST_ERROR + H5Fclose(type_fid); + H5Tclose(type); + if(H5Dclose(dset) < 0) FAIL_STACK_ERROR - /* Create test file, with attribute that uses committed datatype */ - create_del_obj_named_test_file(filename, fapl, new_format); + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR + if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR -/* Test getting file ID for attribute opened through different file ID */ - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + /* Create test file, with attribute that uses committed datatype */ + create_del_obj_named_test_file(filename, fapl, low, high); - /* Verify file ID from dataset matches correct file */ - attr_fid = H5Iget_file_id(attr); - if(attr_fid != filea1) TEST_ERROR - H5Fclose(attr_fid); + /* Test getting file ID for attribute opened through different file ID */ + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if((filea2 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - /* Verify file ID from datatype (from dataset) matches correct file */ - type = H5Aget_type(attr); - type_fid = H5Iget_file_id(type); - if(type_fid != filea1) TEST_ERROR - H5Fclose(type_fid); - H5Tclose(type); + if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Aclose(attr) < 0) FAIL_STACK_ERROR + /* Verify file ID from dataset matches correct file */ + attr_fid = H5Iget_file_id(attr); + if(attr_fid != filea1) TEST_ERROR + H5Fclose(attr_fid); - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + /* Verify file ID from datatype (from dataset) matches correct file */ + type = H5Aget_type(attr); + type_fid = H5Iget_file_id(type); + if(type_fid != filea1) TEST_ERROR + H5Fclose(type_fid); + H5Tclose(type); - if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR + if(H5Aclose(attr) < 0) FAIL_STACK_ERROR - if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR + if((fileb = H5Fcreate(filename2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl2)) < 0) FAIL_STACK_ERROR - /* Verify file ID from dataset matches correct file */ - attr_fid = H5Iget_file_id(attr); - if(attr_fid != filea1) TEST_ERROR - H5Fclose(attr_fid); + if((filea1 = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) FAIL_STACK_ERROR - /* Verify file ID from datatype (from dataset) matches correct file */ - type = H5Aget_type(attr); - type_fid = H5Iget_file_id(type); - if(type_fid != filea1) TEST_ERROR - H5Fclose(type_fid); - H5Tclose(type); + if((attr = H5Aopen_by_name(filea1, DEL_OBJ_NAMED_DATASET, DEL_OBJ_NAMED_ATTRIBUTE, H5P_DEFAULT, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR - if(H5Aclose(attr) < 0) FAIL_STACK_ERROR + /* Verify file ID from dataset matches correct file */ + attr_fid = H5Iget_file_id(attr); + if(attr_fid != filea1) TEST_ERROR + H5Fclose(attr_fid); - if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR - if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR - if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR - } /* end for */ + /* Verify file ID from datatype (from dataset) matches correct file */ + type = H5Aget_type(attr); + type_fid = H5Iget_file_id(type); + if(type_fid != filea1) TEST_ERROR + H5Fclose(type_fid); + H5Tclose(type); + + if(H5Aclose(attr) < 0) FAIL_STACK_ERROR + + if(H5Fclose(filea1) < 0) FAIL_STACK_ERROR + if(H5Fclose(filea2) < 0) FAIL_STACK_ERROR + if(H5Fclose(fileb) < 0) FAIL_STACK_ERROR + } /* end high */ + } /* end low */ if(H5Pclose(fapl2) < 0) FAIL_STACK_ERROR @@ -7018,12 +7054,15 @@ test_delete_obj_named_fileid(hid_t fapl) error: H5E_BEGIN_TRY { - H5Tclose(attr); + H5Aclose(attr); + H5Tclose(type); H5Dclose(dset); H5Pclose(fapl2); H5Fclose(filea1); H5Fclose(filea2); H5Fclose(fileb); + H5Fclose(attr_fid); + H5Fclose(type_fid); } H5E_END_TRY; return 1; } /* end test_delete_obj_named_fileid() */ @@ -7388,7 +7427,369 @@ error: return 1; } +/*------------------------------------------------------------------------- + * Function: verify_version + * + * Purpose: Utility function to verify the datatype versions of nested + * datatype. + * + * Description: + * Verify the datatype message version + * --H5T_COMPOUND, H5T_ENUM, H5T_ARRAY: + * the library will set version according to low_bound + * --H5T_ARRAY: + * the earliest version the library will set is 2 + * --H5T_INTEGER, H5T_FLOAT, H5T_TIME, H5T_STRING, H5T_BITFIELD, + * H5T_OPAQUE, H5T_REFERENCE: + * the library will only use basic version + * + *************************************************************************/ +static herr_t verify_version(hid_t dtype, H5F_libver_t low, unsigned *highest_version) +{ + hid_t base_dtype = -1; + hid_t mem_dtype = -1; + H5T_t *dtypep = NULL; /* Internal structure of a datatype */ + H5T_class_t type_cls = H5T_NO_CLASS; /* Temporary var for datatype class */ + int nmembers = 0; + unsigned i; + herr_t ret = SUCCEED; /* Generic return value */ + + dtypep = (H5T_t *)H5I_object(dtype); + if (dtypep == NULL) TEST_ERROR + + /* Carry out the verification according to the class of the datatype. + For compound datatype, its members will be verified, recursively. + For array datatype, its element datatype will be verified, recursively.*/ + type_cls = dtypep->shared->type; + switch (type_cls) + { + case H5T_ARRAY: + { + H5T_t *base_dtypep = NULL; /* Internal structure of a datatype */ + + if (low == H5F_LIBVER_EARLIEST) + VERIFY(dtypep->shared->version, H5O_DTYPE_VERSION_2, "H5O_dtype_ver_bounds"); + else + VERIFY(dtypep->shared->version, H5O_dtype_ver_bounds[low], "H5O_dtype_ver_bounds"); + + /* Get the base datatype of this array type */ + base_dtype = H5Tget_super(dtype); + CHECK(base_dtype, FAIL, "H5Tget_super"); + + /* Get the base type's internal structure for version */ + base_dtypep = (H5T_t *)H5I_object(base_dtype); + if (base_dtypep == NULL) TEST_ERROR + + /* Reset highest version if this datatype has higher version than + its outer type */ + if (*highest_version < base_dtypep->shared->version) + *highest_version = base_dtypep->shared->version; + + /* Verify the base datatype recursively */ + ret = verify_version(base_dtype, low, highest_version); + + /* Close the member datatype before checking for failure */ + if ((H5Tclose(base_dtype)) < 0) TEST_ERROR + + /* Check if verify_version fails */ + if (ret < 0) TEST_ERROR + + break; + } + case H5T_COMPOUND: + { + H5T_t *mem_dtypep = NULL; /* Internal structure of a datatype */ + /* Get the number of members of this compound type */ + if ((nmembers = H5Tget_nmembers(dtype)) < 0) TEST_ERROR + + /* Go through all its member datatypes */ + for (i = 0; i < (unsigned)nmembers; i++) + { + /* Get the member datatype to verify it recursively */ + mem_dtype = H5Tget_member_type(dtype, i); + if (mem_dtype < 0) TEST_ERROR + + /* Get the member type's internal structure for version */ + mem_dtypep = (H5T_t *)H5I_object(mem_dtype); + if (mem_dtypep == NULL) TEST_ERROR + + /* Reset highest version if this datatype has higher version than + its outer type */ + if (*highest_version < mem_dtypep->shared->version) + *highest_version = mem_dtypep->shared->version; + + /* Verify the datatype recursively */ + ret = verify_version(mem_dtype, low, highest_version); + + /* Close the member datatype before checking for failure */ + if ((H5Tclose(mem_dtype)) < 0) TEST_ERROR + + /* Check if verify_version fails */ + if (ret < 0) TEST_ERROR + } + /* If this compound datatype contains a datatype of higher version, it + will be promoted to that version, thus, verify with highest version */ + if (*highest_version > H5O_dtype_ver_bounds[low]) + VERIFY(dtypep->shared->version, *highest_version, "verify_version"); + else + VERIFY(dtypep->shared->version, H5O_dtype_ver_bounds[low], "verify_version"); + break; + } + case H5T_ENUM: + VERIFY(dtypep->shared->version, H5O_dtype_ver_bounds[low], "verify_version"); + break; + case H5T_VLEN: + case H5T_FLOAT: + case H5T_INTEGER: + VERIFY(dtypep->shared->version, H5O_dtype_ver_bounds[H5F_LIBVER_EARLIEST], "verify_version"); + break; + case H5T_NCLASSES: + case H5T_NO_CLASS: + case H5T_TIME: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_REFERENCE: + default: + TEST_ERROR + } /* end switch */ + +error: + H5E_BEGIN_TRY { + H5Tclose(base_dtype); + H5Tclose(mem_dtype); + } H5E_END_TRY; + return ret; +} /* end of verify_version */ + + +/*------------------------------------------------------------------------- + * Function: test_versionbounds + * + * Purpose: Tests version bounds. + * + * Description: + * This function creates a datatype for a dataset as followed: + * outer_arr_type + * outer_cmp_type + * inner_cmp_type + * inner_arr_type + * simple_cmp_type + * H5T_NATIVE_INT + * H5T_ARRAY of H5T_NATIVE_CHAR + * vlen_floattype + * enum_type + * It then loops through all valid combination of the library version + * bounds to verify each datatype's version. + * + * Return: Success: 0 + * Failure: number of errors + * + *------------------------------------------------------------------------- + */ +#define VERFNAME "tverbounds_dtype.h5" +#define VERDSNAME "dataset 1" +#define ARRAY_RANK 1 +#define ARRAY_LEN 10 +static int +test_versionbounds(void) +{ + typedef struct { /* Struct for the simple compound type */ + int single_int; + char char_arr[ARRAY_LEN]; + } simple_cmp_t; + + typedef struct { /* Struct for the inner compound type */ + simple_cmp_t inner_arr[ARRAY_LEN]; + hvl_t vlen_float; + } inner_cmp_t; + + typedef struct { /* Struct for the outer compound type */ + inner_cmp_t inner_cmp; + color_t enum_color; + } outer_cmp_t; + + hid_t file = -1; /* File ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + hid_t fcpl = -1; /* File creation property list ID */ + hid_t fapl = -1; /* Copy of file access property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t dset_dtype = -1; /* Dataset's datatype */ + hid_t arr_chartype = -1; /* Array of characters datatype */ + hid_t vlen_floattype = -1; /* Vlen of float datatype */ + hid_t enum_type = -1; /* Enumeration datatype */ + hid_t outer_cmp_type = -1; /* Outer compound datatype */ + hid_t inner_cmp_type = -1; /* Inner compound datatype */ + hid_t simple_cmp_type = -1;/* Simple cmpd dtype, contains no other cmpd */ + hid_t outer_arr_type = -1; /* Outermost array datatype */ + hid_t inner_arr_type = -1; /* Inner array datatype */ + H5F_t *filep = NULL; /* Pointer to internal structure of a file */ + H5T_t *dtypep = NULL; /* Pointer to internal structure of a datatype */ + hsize_t arr_dim[] = {ARRAY_LEN}; /* Length of the array */ + H5F_libver_t low, high; /* File format bounds */ + unsigned highest_version; /* Highest version in nested datatypes */ + color_t enum_val; /* Enum type index */ + herr_t ret = 0; /* Generic return value */ + + TESTING("version bounds with nested datatypes"); + + /* Create a file access property list */ + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR + + /* Create a file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR + + /* Create a scalar dataspace */ + if ((space = H5Screate(H5S_SCALAR)) < 0) TEST_ERROR + + /* Create a dataset creation property list */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR + + /* Create an array datatype of chars */ + arr_chartype = H5Tarray_create2(H5T_NATIVE_CHAR, ARRAY_RANK, arr_dim); + if (arr_chartype < 0) TEST_ERROR + + /* Create the simple compound datatype that has an integer and an + array of chars */ + simple_cmp_type = H5Tcreate(H5T_COMPOUND, sizeof(simple_cmp_t)); + if (simple_cmp_type < 0) TEST_ERROR + + /* Insert integer field */ + ret = H5Tinsert(simple_cmp_type, "single_int", HOFFSET(simple_cmp_t, single_int), H5T_NATIVE_INT); + if (ret < 0) TEST_ERROR + /* Insert array field */ + ret = H5Tinsert(simple_cmp_type, "char_arr", HOFFSET(simple_cmp_t, char_arr), arr_chartype); + if (ret < 0) TEST_ERROR + + /* Create an array datatype containing simple compound datatype */ + inner_arr_type = H5Tarray_create2(simple_cmp_type, ARRAY_RANK, arr_dim); + if (inner_arr_type < 0) TEST_ERROR + + /* Create a VL datatype of floats */ + vlen_floattype = H5Tvlen_create(H5T_NATIVE_FLOAT); + if (vlen_floattype < 0) TEST_ERROR + + /* Create the innermost compound datatype that houses inner_arr_type and vlen_floattype */ + inner_cmp_type = H5Tcreate(H5T_COMPOUND, sizeof(inner_cmp_t)); + if (inner_cmp_type < 0) TEST_ERROR + + /* Insert integer field */ + ret = H5Tinsert(inner_cmp_type, "inner_arr", HOFFSET(inner_cmp_t, inner_arr), inner_arr_type); + if (ret < 0) TEST_ERROR + + /* Insert integer field */ + ret = H5Tinsert(inner_cmp_type, "vlen_float", HOFFSET(inner_cmp_t, vlen_float), vlen_floattype); + if (ret < 0) TEST_ERROR + + /* Create a enumerate datatype */ + enum_type = H5Tcreate(H5T_ENUM, sizeof(color_t)); + if (enum_type < 0) TEST_ERROR + + enum_val = E1_RED; + ret = H5Tenum_insert(enum_type, "RED", &enum_val); + if (ret < 0) TEST_ERROR + + enum_val++; + ret = H5Tenum_insert(enum_type, "GREEN", &enum_val); + if (ret < 0) TEST_ERROR + + enum_val++; + ret = H5Tenum_insert(enum_type, "BLUE", &enum_val); + if (ret < 0) TEST_ERROR + + enum_val++; + ret = H5Tenum_insert(enum_type, "ORANGE", &enum_val); + if (ret < 0) TEST_ERROR + + enum_val++; + ret = H5Tenum_insert(enum_type, "YELLOW", &enum_val); + if (ret < 0) TEST_ERROR + + /* Create the outer compound datatype that contains the inner compound datatype and the enum datatype */ + outer_cmp_type = H5Tcreate(H5T_COMPOUND, sizeof(outer_cmp_t)); + if (ret < 0) TEST_ERROR + + /* Insert integer field */ + ret = H5Tinsert(outer_cmp_type, "inner_cmp", HOFFSET(outer_cmp_t, inner_cmp), inner_cmp_type); + if (ret < 0) TEST_ERROR + + /* Insert enum field */ + ret = H5Tinsert(outer_cmp_type, "enum_color", HOFFSET(outer_cmp_t, enum_color), enum_type); + if (ret < 0) TEST_ERROR + + /* Create an array datatype containing the outer compound datatype */ + if ((outer_arr_type = H5Tarray_create2(outer_cmp_type, ARRAY_RANK, arr_dim)) < 0) + TEST_ERROR + + /* Loop through all the combinations of low/high library format bounds, + skipping invalid combinations */ + /* Create the file, create and write to a dataset with compound datatype */ + /* Verify the dataset's datatype and its members */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + /* Set version bounds */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Create a file */ + file = H5Fcreate(VERFNAME, H5F_ACC_TRUNC, fcpl, fapl); + if (file < 0) TEST_ERROR + + /* Get the internal file pointer if the create succeeds */ + if ((filep = (H5F_t *)H5I_object(file)) == NULL) TEST_ERROR + + /* Create dataset using the array type */ + dset = H5Dcreate2(file, VERDSNAME, outer_arr_type, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR + + /* Get the dataset's datatype */ + if ((dset_dtype = H5Dget_type(dset)) < 0) TEST_ERROR + + /* Get the version of this datatype */ + dtypep = (H5T_t *)H5I_object(dset_dtype); + if (dtypep == NULL) TEST_ERROR + highest_version = dtypep->shared->version; + + /* Verify version of the datatype recursevily */ + ret = verify_version(dset_dtype, low, &highest_version); + + /* Close the dataset's datatype */ + if (H5Tclose(dset_dtype) < 0) TEST_ERROR + + /* Close dataset and file */ + if (H5Dclose(dset) < 0) TEST_ERROR + if (H5Fclose(file) < 0) TEST_ERROR + + } /* for high */ + } /* for low */ + + /* Close dataspace and property lists */ + if (H5Sclose(space) < 0) TEST_ERROR + if (H5Pclose(fcpl) < 0) TEST_ERROR + if (H5Pclose(fapl) < 0) TEST_ERROR + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Tclose(dset_dtype); + H5Pclose(dcpl); + H5Pclose(fcpl); + H5Pclose(fapl); + H5Fclose(file); + } H5E_END_TRY; + return 1; +} /* end test_versionbounds() */ /*------------------------------------------------------------------------- @@ -7411,7 +7812,7 @@ int main(void) { long nerrors = 0; - hid_t fapl = -1; + hid_t fapl = -1; /* Set the random # seed */ HDsrandom((unsigned)HDtime(NULL)); @@ -7428,7 +7829,6 @@ main(void) nerrors += test_detect(); nerrors += test_compound_1(); nerrors += test_query(); - nerrors += test_transient(fapl); nerrors += test_named(fapl); nerrors += test_encode(); @@ -7473,6 +7873,7 @@ main(void) nerrors += test_opaque(); nerrors += test_set_order(); nerrors += test_utf_ascii_conv(); + nerrors += test_versionbounds(); if(nerrors) { printf("***** %lu FAILURE%s! *****\n", diff --git a/test/fheap.c b/test/fheap.c index 6c3a8ac..1be952f 100644 --- a/test/fheap.c +++ b/test/fheap.c @@ -16458,6 +16458,33 @@ main(void) if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, TRUE, (hsize_t)1) < 0) TEST_ERROR fapl = def_fapl; + /* This is a fix for the daily test failure from the checkin for libver bounds. */ + /* + * Many tests failed the file size check when comparing (a) and (b) as below: + * --Create a file and close the file. Got the initial file size (a). + * --Reopen the file, perform fractal heap operations, and close the file. + * Got the file size (b). + * The cause for the file size differences: + * When the file is initially created with persisting free-space and with + * (earliest, latest) libver bounds, the file will have version 2 superblock + * due to non-default free-space handling. As the low bound is earliest, + * the library uses version 1 object header when creating the superblock + * extension message. + * When the file is reopened with the same libver bounds, the file's low + * bound is upgraded to v18 because the file has version 2 superblock. + * When the library creates the superblock extension message on file close, + * the library uses version 2 object header for the superblock extension + * message since the low bound is v18. + * This leads to the discrepancy in file sizes as the file is persisting + * free-space and there is object header version differences. + * The fix: + * Set libver bounds in fapl to (v18, latest) so that the file created in the + * test routines will have low bound set to v18. This will cause the + * library to use version 2 object header for the superblock extension + * message. + */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_V18, H5F_LIBVER_LATEST) < 0) + TEST_ERROR break; case 2: if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, FALSE, (hsize_t)1) < 0) diff --git a/test/gen_bounds.c b/test/gen_bounds.c new file mode 100644 index 0000000..7b670f7 --- /dev/null +++ b/test/gen_bounds.c @@ -0,0 +1,619 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * Purpose: This program is to generate HDF5 data files used to test + * version bounds. + * + * Description + * =========== + * gen_bounds.c will generate the following files: + * - bounds_earliest_latest.h5 + * - bounds_earliest_v18.h5 + * - bounds_latest_latest.h5 + * - bounds_v18_latest.h5 + * - bounds_v18_v18.h5 + * These files are copied to 1.6 and 1.8 libraries for verifying + * that they can or cannot read particular file format. + */ + +#include "h5test.h" + +/*********************************************************************** + * gen_earliest_latest() creates file "bounds_earliest_latest.h5" + * + * File contents: + * - Version 0 superblock (default) + * - A chunked dataset with layout version 3, "DS_chunked_layout_3". (default) + * - A chunked dataset with layout version 4, "DS_chunked_layout_4". (H5Pset_chunk_opts) + * + * Return: SUCCEED/FAIL + * + ***********************************************************************/ + +/* File names for different file format */ +#define FILENAME_E_L "bounds_earliest_latest.h5" +#define FILENAME_E_18 "bounds_earliest_v18.h5" +#define FILENAME_L_L "bounds_latest_latest.h5" +#define FILENAME_18_L "bounds_v18_latest.h5" +#define FILENAME_18_18 "bounds_v18_v18.h5" + +/* 2-D dataset with fixed dimensions */ +#define RANK 2 +#define DIM1 100 +#define DIM2 200 +#define CHK_DIM1 50 +#define CHK_DIM2 50 + +static herr_t gen_earliest_latest(void) +{ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t fcpl = -1; /* File creation property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + float *buf = NULL; /* Buffer for writing data */ + float *bufp = NULL; /* Pointer to data buffer */ + hsize_t dims[RANK] = {DIM1, DIM2}; /* Dimensions */ + hsize_t chunk_dims[RANK] = {CHK_DIM1, CHK_DIM2}; /* Dimensions of chunk */ + int i, j; + herr_t ret = SUCCEED; /* Generic return value */ + + /* Create file creation property list */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR; + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the earliest/latest version of the format" bounds + for creating objects in the file */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST) < 0) + TEST_ERROR; + + /* Create file */ + if((fid = H5Fcreate(FILENAME_E_L, H5F_ACC_TRUNC, fcpl, fapl)) <0) + TEST_ERROR; + + /* Close file property lists */ + if(H5Pclose(fapl) < 0) TEST_ERROR; + if(H5Pclose(fcpl) < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 3 (default) + */ + buf = (float *)HDmalloc((size_t)DIM1 * (size_t)DIM2 * sizeof(float)); + if (buf == NULL) TEST_ERROR; + + /* Fill sample data */ + bufp = buf; + for (i = 0; i < DIM1; i++) + for (j = 0; j < DIM2; j++) + *bufp = 100.0F; + + /* Create the dataspace */ + if((space = H5Screate_simple(RANK, dims, NULL)) < 0) TEST_ERROR; + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_3", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Close property list and dataset, will reuse dataspace */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 4 (H5Pset_chunk_opts) + */ + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Disable partial chunk filters, triggers layout version 4 */ + if(H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS) < 0) + TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_4", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Release allocated buffer */ + HDfree(buf); + bufp = buf = NULL; + + /* Close everything */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + if(H5Sclose(space) < 0) TEST_ERROR; + if(H5Fclose(fid) < 0) TEST_ERROR; + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Pclose(dcpl); + H5Pclose(fcpl); + H5Pclose(fapl); + H5Fclose(fid); + HDfree(buf); + } H5E_END_TRY; + return FAIL; +} /* gen_earliest_latest */ + +/*********************************************************************** + * gen_earliest_v18() creates file "bounds_earliest_v18.h5" + * + * File contents: + * - Version 0 superblock (default) + * - A chunked dataset with layout version 3, "DS_chunked_layout_3". (default) + * + * Return: SUCCEED/FAIL + * + ***********************************************************************/ +static herr_t gen_earliest_v18(void) +{ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t fcpl = -1; /* File creation property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + float *buf = NULL; /* Buffer for writing data */ + float *bufp = NULL; /* Pointer to data buffer */ + hsize_t dims[RANK] = {DIM1, DIM2}; /* Dimensions */ + hsize_t chunk_dims[RANK] = {CHK_DIM1, CHK_DIM2}; /* Dimensions of chunk */ + int i, j; + herr_t ret = SUCCEED; /* Generic return value */ + + /* Create file creation property list */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR; + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the earliest/v18 version of the format" bounds + for creating objects in the file */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_EARLIEST, H5F_LIBVER_V18) < 0) + TEST_ERROR; + + /* Create file */ + if((fid = H5Fcreate(FILENAME_E_18, H5F_ACC_TRUNC, fcpl, fapl)) <0) + TEST_ERROR; + + /* Close file property lists */ + if(H5Pclose(fapl) < 0) TEST_ERROR; + if(H5Pclose(fcpl) < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 3 (default) + */ + + buf = (float *)HDmalloc((size_t)DIM1 * (size_t)DIM2 * sizeof(float)); + if (buf == NULL) TEST_ERROR; + + /* Fill sample data */ + bufp = buf; + for (i = 0; i < DIM1; i++) + for (j = 0; j < DIM2; j++) + *bufp = 100.0F; + + /* Create the dataspace */ + if((space = H5Screate_simple(RANK, dims, NULL)) < 0) TEST_ERROR; + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_3", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Release allocated buffer */ + HDfree(buf); + bufp = buf = NULL; + + /* Close everything */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + if(H5Sclose(space) < 0) TEST_ERROR; + if(H5Fclose(fid) < 0) TEST_ERROR; + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Pclose(dcpl); + H5Pclose(fcpl); + H5Pclose(fapl); + H5Fclose(fid); + HDfree(buf); + } H5E_END_TRY; + return FAIL; +} /* gen_earliest_v18 */ + +/*********************************************************************** + * gen_latest_latest() creates file "bounds_latest_latest.h5" + * + * NOTE: As of March 2018, latest is 1.10. + * + * File contents: + * - Version 3 superblock (NOTE: this can also be triggered by passing in + * H5F_ACC_SWMR_WRITE, in place of H5F_ACC_TRUNC, to H5Fcreate) + * - A chunked dataset with layout version 4, "DS_chunked_layout_4". + * (triggered by H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS) + * + * Return: SUCCEED/FAIL + * + ***********************************************************************/ +static herr_t gen_latest_latest(void) +{ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + float *buf = NULL; /* Buffer for writing data */ + float *bufp = NULL; /* Pointer to data buffer */ + hsize_t dims[RANK] = {DIM1, DIM2}; /* Dimensions */ + hsize_t chunk_dims[RANK] = {CHK_DIM1, CHK_DIM2}; /* Dimensions of chunk */ + int i, j; + herr_t ret = SUCCEED; /* Generic return value */ + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the latest/latest version of the format" bounds + for creating objects in the file */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + TEST_ERROR; + + /* Create the file with version 3 superblock */ + fid = H5Fcreate(FILENAME_L_L, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + if (fid < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 4 (H5Pset_chunk_opts) + */ + + buf = (float *)HDmalloc((size_t)DIM1 * (size_t)DIM2 * sizeof(float)); + if (buf == NULL) TEST_ERROR; + + /* Fill sample data */ + bufp = buf; + for (i = 0; i < DIM1; i++) + for (j = 0; j < DIM2; j++) + *bufp = 100.0F; + + /* Create the dataspace */ + if((space = H5Screate_simple(RANK, dims, NULL)) < 0) TEST_ERROR; + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Disable partial chunk filters, triggers layout version 4 */ + if(H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS) < 0) + TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_4", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Release allocated buffer */ + HDfree(buf); + bufp = buf = NULL; + + /* Close everything */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + if(H5Sclose(space) < 0) TEST_ERROR; + if(H5Fclose(fid) < 0) TEST_ERROR; + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Pclose(dcpl); + H5Fclose(fid); + HDfree(buf); + } H5E_END_TRY; + return FAIL; +} /* gen_latest_latest */ + +/*********************************************************************** + * gen_v18_latest() creates file "bounds_v18_latest.h5" + * + * NOTE: As of March 2018, latest is 1.10. + * + * File contents: + * - Version 2 superblock + * - A chunked dataset with layout version 3, "DS_chunked_layout_3". (default) + * + * Return: SUCCEED/FAIL + * + ***********************************************************************/ +static herr_t gen_v18_latest(void) +{ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t fcpl = -1; /* File creation property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + float *buf = NULL; /* Buffer for writing data */ + float *bufp = NULL; /* Pointer to data buffer */ + hsize_t dims[RANK] = {DIM1, DIM2}; /* Dimensions */ + hsize_t chunk_dims[RANK] = {CHK_DIM1, CHK_DIM2}; /* Dimensions of chunk */ + int i, j; + herr_t ret = SUCCEED; /* Generic return value */ + + /* Create file creation property list */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR; + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the v18/latest version of the format" bounds + for creating objects in the file, also trigger version 2 superblock */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_V18, H5F_LIBVER_LATEST) < 0) + TEST_ERROR; + + /* Create file */ + if((fid = H5Fcreate(FILENAME_18_L, H5F_ACC_TRUNC, fcpl, fapl)) <0) + TEST_ERROR; + + /* Close file property lists */ + if(H5Pclose(fapl) < 0) TEST_ERROR; + if(H5Pclose(fcpl) < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 3 (default) + */ + + buf = (float *)HDmalloc((size_t)DIM1 * (size_t)DIM2 * sizeof(float)); + if (buf == NULL) TEST_ERROR; + + /* Fill sample data */ + bufp = buf; + for (i = 0; i < DIM1; i++) + for (j = 0; j < DIM2; j++) + *bufp = 100.0F; + + /* Create the dataspace */ + if((space = H5Screate_simple(RANK, dims, NULL)) < 0) TEST_ERROR; + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_3", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Release allocated buffer */ + HDfree(buf); + bufp = buf = NULL; + + /* Close property list and dataset, will reuse dataspace */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + if(H5Sclose(space) < 0) TEST_ERROR; + if(H5Fclose(fid) < 0) TEST_ERROR; + + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Pclose(dcpl); + H5Pclose(fcpl); + H5Pclose(fapl); + H5Fclose(fid); + HDfree(buf); + } H5E_END_TRY; + return FAIL; +} /* gen_v18_latest */ + +/*********************************************************************** + * gen_v18_v18() creates file "bounds_v18_v18.h5" + * + * File contents: + * - Version 2 superblock (H5Pset_libver_bounds(v18, v18) + * - A chunked dataset with layout version 3, "DS_chunked_layout_3". (default) + * - A chunked dataset with layout version 4, "DS_chunked_layout_4". (H5Pset_chunk_opts) + * + * Return: SUCCEED/FAIL + * + ***********************************************************************/ +static herr_t gen_v18_v18(void) +{ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t fcpl = -1; /* File creation property list ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + float *buf = NULL; /* Buffer for writing data */ + float *bufp = NULL; /* Pointer to data buffer */ + hsize_t dims[RANK] = {DIM1, DIM2}; /* Dimensions */ + hsize_t chunk_dims[RANK] = {CHK_DIM1, CHK_DIM2}; /* Dimensions of chunk */ + int i, j; + herr_t ret = SUCCEED; /* Generic return value */ + + /* Create file creation property list */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) TEST_ERROR; + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the v18 version of the format" bounds + for creating objects in the file */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_V18, H5F_LIBVER_V18) < 0) + TEST_ERROR; + + /* Create file */ + if((fid = H5Fcreate(FILENAME_18_18, H5F_ACC_TRUNC, fcpl, fapl)) <0) + TEST_ERROR; + + /* Close file property lists */ + if(H5Pclose(fapl) < 0) TEST_ERROR; + if(H5Pclose(fcpl) < 0) TEST_ERROR; + + /* + * Add a chunked dataset with layout version 3 (default) + */ + + buf = (float *)HDmalloc((size_t)DIM1 * (size_t)DIM2 * sizeof(float)); + if (buf == NULL) TEST_ERROR; + + /* Fill sample data */ + bufp = buf; + for (i = 0; i < DIM1; i++) + for (j = 0; j < DIM2; j++) + *bufp = 100.0F; + + /* Create the dataspace */ + if((space = H5Screate_simple(RANK, dims, NULL)) < 0) TEST_ERROR; + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_3", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Close property list and dataset, will reuse dataspace */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + + /* Close the file, then reopen it with the latest version */ + if(H5Fclose(fid) < 0) TEST_ERROR; + + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR; + + /* Set the "use the v18/latest version of the format" bounds + for creating a layout version 4 object in the file */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_V18, H5F_LIBVER_LATEST) < 0) + TEST_ERROR; + + if((fid = H5Fopen(FILENAME_18_18, H5F_ACC_RDWR, fapl)) < 0) + TEST_ERROR; + + /* + * Add a chunked dataset with layout version 4 (H5Pset_chunk_opts) + */ + + /* Create the dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; + + /* Set up for chunked data */ + if(H5Pset_chunk(dcpl, 2, chunk_dims) < 0) TEST_ERROR; + + /* Disable partial chunk filters */ + if(H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS) < 0) + TEST_ERROR; + + /* Create and write the dataset */ + dset = H5Dcreate2(fid, "DS_chunked_layout_4", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + if (dset < 0) TEST_ERROR; + ret = H5Dwrite(dset, H5T_NATIVE_FLOAT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR; + + /* Release allocated buffer */ + HDfree(buf); + bufp = buf = NULL; + + /* Close everything */ + if(H5Pclose(dcpl) < 0) TEST_ERROR; + if(H5Pclose(fapl) < 0) TEST_ERROR; + if(H5Dclose(dset) < 0) TEST_ERROR; + if(H5Sclose(space) < 0) TEST_ERROR; + if(H5Fclose(fid) < 0) TEST_ERROR; + return SUCCEED; + +error: + H5E_BEGIN_TRY { + H5Dclose(dset); + H5Sclose(space); + H5Pclose(dcpl); + H5Pclose(fcpl); + H5Pclose(fapl); + H5Fclose(fid); + HDfree(buf); + } H5E_END_TRY; + return FAIL; +} /* gen_v18_v18 */ + +int main(void) +{ + /* Generate file bounds_earliest_latest.h5 */ + if (gen_earliest_latest() < 0) TEST_ERROR; + + /* Generate file bounds_earliest_v18.h5 */ + if (gen_earliest_v18() < 0) TEST_ERROR; + + /* Generate file bounds_latest_latest.h5 */ + if (gen_latest_latest() < 0) TEST_ERROR; + + /* Generate file bounds_v18_latest.h5 */ + if (gen_v18_latest() < 0) TEST_ERROR; + + /* Generate file bounds_v18_v18.h5 */ + if (gen_v18_v18() < 0) TEST_ERROR; + + return EXIT_SUCCESS; + +error: + return EXIT_FAILURE; +} + diff --git a/test/gen_cross.c b/test/gen_cross.c index 60ae319..f7a1938 100644 --- a/test/gen_cross.c +++ b/test/gen_cross.c @@ -78,7 +78,7 @@ int create_szip_dsets_float(hid_t fid, hid_t fsid, hid_t msid); int create_shuffle_dsets_float(hid_t fid, hid_t fsid, hid_t msid); int create_nbit_dsets_float(hid_t fid, hid_t fsid, hid_t msid); - + /*------------------------------------------------------------------------- * Function: create_normal_dset * @@ -107,8 +107,8 @@ create_normal_dset(hid_t fid, hid_t fsid, hid_t msid) * Data and output buffer initialization. */ for (j = 0; j < NX; j++) { - for (i = 0; i < NY; i++) - data[j][i] = ((float)(i + j + 1)) / 3; + for (i = 0; i < NY; i++) + data[j][i] = ((float)(i + j + 1)) / 3; } /* * 1/3 2/3 3/3 4/3 5/3 6/3 @@ -142,7 +142,7 @@ create_normal_dset(hid_t fid, hid_t fsid, hid_t msid) if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0) TEST_ERROR - /* + /* * Close dataset */ if(H5Dclose(dataset) < 0) @@ -162,7 +162,7 @@ create_normal_dset(hid_t fid, hid_t fsid, hid_t msid) if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0) TEST_ERROR - /* + /* * Close dataset */ if(H5Dclose(dataset) < 0) @@ -185,7 +185,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dsets_float * @@ -276,7 +276,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dsets_double * @@ -306,8 +306,8 @@ create_scale_offset_dsets_double(hid_t fid, hid_t fsid, hid_t msid) * Data and output buffer initialization. */ for (j = 0; j < NX; j++) { - for (i = 0; i < NY; i++) - data[j][i] = ((double)(i + j + 1))/3; + for (i = 0; i < NY; i++) + data[j][i] = ((double)(i + j + 1))/3; } /* @@ -367,7 +367,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dset_char * @@ -466,7 +466,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dset_short * @@ -565,7 +565,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dset_int * @@ -595,8 +595,8 @@ create_scale_offset_dsets_int(hid_t fid, hid_t fsid, hid_t msid) * Data and output buffer initialization. */ for (j = 0; j < NX; j++) { - for (i = 0; i < NY; i++) - data[j][i] = i + j; + for (i = 0; i < NY; i++) + data[j][i] = i + j; } /* * 0 1 2 3 4 5 @@ -664,7 +664,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_scale_offset_dset_long_long * @@ -764,7 +764,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_fletcher_dsets_float * @@ -855,7 +855,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_deflate_dsets_float * @@ -956,7 +956,7 @@ error: } #ifdef H5_HAVE_FILTER_SZIP - + /*------------------------------------------------------------------------- * Function: create_szip_dsets_float * @@ -1048,7 +1048,7 @@ error: } #endif /* H5_HAVE_FILTER_SZIP */ - + /*------------------------------------------------------------------------- * Function: create_shuffle_dsets_float * @@ -1139,7 +1139,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: create_nbit_dsets_float * @@ -1224,7 +1224,7 @@ create_nbit_dsets_float(hid_t fid, hid_t fsid, hid_t msid) TEST_ERROR /* Now create a dataset with a big-endian type */ - if(H5Tset_order(datatype, H5T_ORDER_BE) < 0) + if(H5Tset_order(datatype, H5T_ORDER_BE) < 0) TEST_ERROR if((dataset = H5Dcreate2(fid, DATASETNAME23, datatype, fsid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) @@ -1251,7 +1251,7 @@ error: return -1; } - + /*------------------------------------------------------------------------- * Function: main * diff --git a/test/genall5.c b/test/genall5.c index a48f14b..e3a9c96 100644 --- a/test/genall5.c +++ b/test/genall5.c @@ -1248,29 +1248,55 @@ void os_grp_0(hid_t fid, const char *group_name) { hid_t gid = -1; + hid_t fapl = -1; + H5F_libver_t low, high; + herr_t ret; - if ( pass ) { /* turn file format latest off */ + if ( pass ) { /* get the file's file access property list */ - ret = H5Fset_latest_format(fid, FALSE); + fapl = H5Fget_access_plist(fid); + if ( fapl <= 0 ) { - if ( ret < 0 ) { + pass = FALSE; + failure_mssg = "os_grp_0: H5Fget_access_plist() failed."; + } + HDassert(fapl > 0); + } + + if ( pass ) { /* get low and high bounds from fapl */ - pass = FALSE; - failure_mssg = "os_grp_0: H5Fset_latest_format() failed(1)."; - } + ret = H5Pget_libver_bounds(fapl, &low, &high); + if ( ret < 0 ) { + + pass = FALSE; + failure_mssg = "os_grp_0: H5Pget_libver_bounds() failed(1)."; + } HDassert(ret >= 0); } + if ( pass ) { /* turn file format latest off */ + + if(low >= H5F_LIBVER_V18) { + ret = H5Fset_libver_bounds(fid, H5F_LIBVER_EARLIEST, high); + if ( ret < 0 ) { + + pass = FALSE; + failure_mssg = "os_grp_0: H5Fset_libver_bounds() failed(1)."; + } + HDassert(ret >= 0); + } + } + if ( pass ) { gid = H5Gcreate2(fid, group_name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if ( gid <= 0 ) { - pass = FALSE; - failure_mssg = "os_grp_0: H5Gcreate2() failed."; - } + pass = FALSE; + failure_mssg = "os_grp_0: H5Gcreate2() failed."; + } HDassert(gid > 0); } @@ -1278,24 +1304,25 @@ os_grp_0(hid_t fid, const char *group_name) ret = H5Gclose(gid); - if ( ret < 0 ) { + if ( ret < 0 ) { - pass = FALSE; - failure_mssg = "os_grp_0: H5Gclose() failed."; - } + pass = FALSE; + failure_mssg = "os_grp_0: H5Gclose() failed."; + } HDassert(ret >= 0); } - if ( pass ) { /* turn file format latest on */ + if ( pass ) { /* restore low and high bounds */ - ret = H5Fset_latest_format(fid, TRUE); - - if ( ret < 0 ) { + if(low >= H5F_LIBVER_V18) { + ret = H5Fset_libver_bounds(fid, low, high); + if ( ret < 0 ) { - pass = FALSE; - failure_mssg = "os_grp_0: H5Fset_latest_format() failed(2)."; - } - HDassert(ret >= 0); + pass = FALSE; + failure_mssg = "os_grp_0: H5Fset_libver_bounds() failed(1)."; + } + HDassert(ret >= 0); + } } return; @@ -1462,28 +1489,53 @@ os_grp_n(hid_t fid, const char *group_name, int proc_num, unsigned nlinks) { hid_t gid = -1; unsigned u; + hid_t fapl = -1; + H5F_libver_t low, high; herr_t ret; - if ( pass ) { /* turn file format latest off */ + if ( pass ) { /* get the file's file access property list */ - ret = H5Fset_latest_format(fid, FALSE); + fapl = H5Fget_access_plist(fid); + if ( fapl <= 0 ) { - if ( ret < 0 ) { + pass = FALSE; + failure_mssg = "os_grp_n: H5Fget_access_plist() failed."; + } + HDassert(fapl > 0); + } - pass = FALSE; - failure_mssg = "os_grp_n: H5Fset_latest_format() failed(1)."; - } + if ( pass ) { /* get low and high bounds from fapl */ + + ret = H5Pget_libver_bounds(fapl, &low, &high); + if ( ret < 0 ) { + + pass = FALSE; + failure_mssg = "os_grp_0: H5Pget_libver_bounds() failed(1)."; + } HDassert(ret >= 0); } + if ( pass ) { /* turn file format latest off */ + + if(low >= H5F_LIBVER_V18) { + ret = H5Fset_libver_bounds(fid, H5F_LIBVER_EARLIEST, high); + if ( ret < 0 ) { + + pass = FALSE; + failure_mssg = "os_grp_0: H5Fset_libver_bounds() failed(1)."; + } + HDassert(ret >= 0); + } + } + if ( pass ) { gid = H5Gcreate2(fid, group_name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if ( gid <= 0 ) { - pass = FALSE; - failure_mssg = "os_grp_n: H5Gcreate2() failed."; + pass = FALSE; + failure_mssg = "os_grp_n: H5Gcreate2() failed."; } HDassert(gid > 0); } @@ -1538,16 +1590,17 @@ os_grp_n(hid_t fid, const char *group_name, int proc_num, unsigned nlinks) assert(ret >= 0); } - if ( pass ) { /* turn file format latest on */ - - ret = H5Fset_latest_format(fid, TRUE); + if ( pass ) { /* restore low and high bounds */ - if ( ret < 0 ) { + if(low >= H5F_LIBVER_V18) { + ret = H5Fset_libver_bounds(fid, low, high); + if ( ret < 0 ) { - pass = FALSE; - failure_mssg = "os_grp_n: H5Fset_latest_format() failed(2)."; - } - HDassert(ret >= 0); + pass = FALSE; + failure_mssg = "os_grp_n: H5Fset_libver_bounds() failed(2)."; + } + HDassert(ret >= 0); + } } return; diff --git a/test/gheap.c b/test/gheap.c index c354366..110255b 100644 --- a/test/gheap.c +++ b/test/gheap.c @@ -15,9 +15,9 @@ * Programmer: Robb Matzke <matzke@llnl.gov> * Tuesday, March 31, 1998 * - * Purpose: Tests the global heap. The global heap is the set of all - * collections but the collections are not related to one - * another by anything that appears in the file format. + * Purpose: Tests the global heap. The global heap is the set of all + * collections but the collections are not related to one + * another by anything that appears in the file format. */ #include "h5test.h" #include "H5ACprivate.h" @@ -54,18 +54,18 @@ const char *FILENAME[] = { NULL }; - + /*------------------------------------------------------------------------- - * Function: test_1 + * Function: test_1 * - * Purpose: Writes a sequence of objects to the global heap where each - * object is larger than the one before. + * Purpose: Writes a sequence of objects to the global heap where each + * object is larger than the one before. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: number of errors + * Failure: number of errors * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, March 31, 1998 * * Modifications: @@ -75,16 +75,16 @@ const char *FILENAME[] = { static int test_1 (hid_t fapl) { - hid_t file = -1; - H5F_t *f = NULL; - H5HG_t *obj = NULL; - uint8_t out[GHEAP_TEST_NOBJS]; - uint8_t in[GHEAP_TEST_NOBJS]; - size_t u; - size_t size; - herr_t status; - int nerrors = 0; - char filename[1024]; + hid_t file = -1; + H5F_t *f = NULL; + H5HG_t *obj = NULL; + uint8_t out[GHEAP_TEST_NOBJS]; + uint8_t in[GHEAP_TEST_NOBJS]; + size_t u; + size_t size; + herr_t status; + int nerrors = 0; + char filename[1024]; TESTING("monotonically increasing lengths"); @@ -95,11 +95,11 @@ test_1 (hid_t fapl) /* Open a clean file */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) - goto error; + goto error; if(NULL == (f = (H5F_t *)H5I_object(file))) { - H5_FAILED(); - puts(" Unable to create file"); - goto error; + H5_FAILED(); + puts(" Unable to create file"); + goto error; } /* @@ -108,37 +108,37 @@ test_1 (hid_t fapl) * be monotonically increasing. */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - size = u + 1; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - status = H5HG_insert(f, H5AC_ind_read_dxpl_id, size, out, obj + u); - if(status < 0) { - H5_FAILED(); - puts(" Unable to insert object into global heap"); - nerrors++; - } else if(u && H5F_addr_gt(obj[u - 1].addr, obj[u].addr)) { - H5_FAILED(); - puts(" Collection addresses are not monotonically increasing"); - nerrors++; - } + size = u + 1; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + status = H5HG_insert(f, H5AC_ind_read_dxpl_id, size, out, obj + u); + if(status < 0) { + H5_FAILED(); + puts(" Unable to insert object into global heap"); + nerrors++; + } else if(u && H5F_addr_gt(obj[u - 1].addr, obj[u].addr)) { + H5_FAILED(); + puts(" Collection addresses are not monotonically increasing"); + nerrors++; + } } /* * Now try to read each object back. */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - size = u + 1; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - if(NULL == H5HG_read(f, H5AC_ind_read_dxpl_id, obj + u, in, NULL)) { - H5_FAILED(); - puts(" Unable to read object"); - nerrors++; - } else if(HDmemcmp(in, out, size)) { - H5_FAILED(); - puts(" Value read doesn't match value written"); - nerrors++; - } + size = u + 1; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + if(NULL == H5HG_read(f, H5AC_ind_read_dxpl_id, obj + u, in, NULL)) { + H5_FAILED(); + puts(" Unable to read object"); + nerrors++; + } else if(HDmemcmp(in, out, size)) { + H5_FAILED(); + puts(" Value read doesn't match value written"); + nerrors++; + } } /* Release buffer */ @@ -153,25 +153,25 @@ test_1 (hid_t fapl) error: H5E_BEGIN_TRY { - H5Fclose(file); + H5Fclose(file); } H5E_END_TRY; if(obj) HDfree(obj); return MAX(1, nerrors); } - + /*------------------------------------------------------------------------- - * Function: test_2 + * Function: test_2 * - * Purpose: Writes a sequence of objects to the global heap where each - * object is smaller than the one before. + * Purpose: Writes a sequence of objects to the global heap where each + * object is smaller than the one before. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: number of errors + * Failure: number of errors * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, March 31, 1998 * * Modifications: @@ -181,15 +181,15 @@ error: static int test_2 (hid_t fapl) { - hid_t file = -1; - H5F_t *f = NULL; - H5HG_t *obj = NULL; - uint8_t out[GHEAP_TEST_NOBJS]; - uint8_t in[GHEAP_TEST_NOBJS]; - size_t u; - size_t size; - int nerrors = 0; - char filename[1024]; + hid_t file = -1; + H5F_t *f = NULL; + H5HG_t *obj = NULL; + uint8_t out[GHEAP_TEST_NOBJS]; + uint8_t in[GHEAP_TEST_NOBJS]; + size_t u; + size_t size; + int nerrors = 0; + char filename[1024]; TESTING("monotonically decreasing lengths"); @@ -200,43 +200,43 @@ test_2 (hid_t fapl) /* Open a clean file */ h5_fixname(FILENAME[1], fapl, filename, sizeof filename); if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) - goto error; + goto error; if(NULL == (f = (H5F_t *)H5I_object(file))) { - H5_FAILED(); - puts(" Unable to create file"); - goto error; + H5_FAILED(); + puts(" Unable to create file"); + goto error; } /* * Write the objects, monotonically decreasing in length. */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - size = GHEAP_TEST_NOBJS - u; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - if (H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u) < 0) { - H5_FAILED(); - puts(" Unable to insert object into global heap"); - nerrors++; - } + size = GHEAP_TEST_NOBJS - u; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + if (H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u) < 0) { + H5_FAILED(); + puts(" Unable to insert object into global heap"); + nerrors++; + } } /* * Now try to read each object back. */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - size = GHEAP_TEST_NOBJS - u; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - if (NULL==H5HG_read (f, H5AC_ind_read_dxpl_id, obj + u, in, NULL)) { - H5_FAILED(); - puts(" Unable to read object"); - nerrors++; - } else if (memcmp (in, out, size)) { - H5_FAILED(); - puts(" Value read doesn't match value written"); - nerrors++; - } + size = GHEAP_TEST_NOBJS - u; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + if (NULL==H5HG_read (f, H5AC_ind_read_dxpl_id, obj + u, in, NULL)) { + H5_FAILED(); + puts(" Unable to read object"); + nerrors++; + } else if (memcmp (in, out, size)) { + H5_FAILED(); + puts(" Value read doesn't match value written"); + nerrors++; + } } /* Release buffer */ @@ -251,25 +251,25 @@ test_2 (hid_t fapl) error: H5E_BEGIN_TRY { - H5Fclose(file); + H5Fclose(file); } H5E_END_TRY; if(obj) HDfree(obj); return MAX(1, nerrors); } - + /*------------------------------------------------------------------------- - * Function: test_3 + * Function: test_3 * - * Purpose: Creates a few global heap objects and then removes them all. - * The collection should also be removed. + * Purpose: Creates a few global heap objects and then removes them all. + * The collection should also be removed. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: number of errors + * Failure: number of errors * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, March 31, 1998 * * Modifications: @@ -279,15 +279,15 @@ test_2 (hid_t fapl) static int test_3 (hid_t fapl) { - hid_t file = -1; - H5F_t *f = NULL; - H5HG_t *obj = NULL; - uint8_t out[GHEAP_TEST_NOBJS]; - size_t u; - size_t size; - herr_t status; - int nerrors = 0; - char filename[1024]; + hid_t file = -1; + H5F_t *f = NULL; + H5HG_t *obj = NULL; + uint8_t out[GHEAP_TEST_NOBJS]; + size_t u; + size_t size; + herr_t status; + int nerrors = 0; + char filename[1024]; TESTING("complete object removal"); @@ -298,34 +298,34 @@ test_3 (hid_t fapl) /* Open a clean file */ h5_fixname(FILENAME[2], fapl, filename, sizeof filename); if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) - goto error; + goto error; if(NULL == (f = (H5F_t *)H5I_object(file))) { - H5_FAILED(); - puts(" Unable to create file"); - goto error; + H5_FAILED(); + puts(" Unable to create file"); + goto error; } /* Create some stuff */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - size = u % 30 + 100; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - status = H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u); - if (status<0) { - H5_FAILED(); - puts(" Unable to insert object into global heap"); - nerrors++; - } + size = u % 30 + 100; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + status = H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u); + if (status<0) { + H5_FAILED(); + puts(" Unable to insert object into global heap"); + nerrors++; + } } /* Remove everything */ for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - status = H5HG_remove (f, H5AC_ind_read_dxpl_id, obj + u); - if (status<0) { - H5_FAILED(); - puts(" Unable to remove object"); - nerrors++; - } + status = H5HG_remove (f, H5AC_ind_read_dxpl_id, obj + u); + if (status<0) { + H5_FAILED(); + puts(" Unable to remove object"); + nerrors++; + } } /* Release buffer */ @@ -340,26 +340,26 @@ test_3 (hid_t fapl) error: H5E_BEGIN_TRY { - H5Fclose(file); + H5Fclose(file); } H5E_END_TRY; if(obj) HDfree(obj); return MAX(1, nerrors); } - + /*------------------------------------------------------------------------- - * Function: test_4 + * Function: test_4 * - * Purpose: Tests the H5HG_remove() feature by writing lots of objects - * and occassionally removing some. When we're done they're all - * removed. + * Purpose: Tests the H5HG_remove() feature by writing lots of objects + * and occassionally removing some. When we're done they're all + * removed. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: number of errors + * Failure: number of errors * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, March 31, 1998 * * Modifications: @@ -369,15 +369,15 @@ test_3 (hid_t fapl) static int test_4 (hid_t fapl) { - hid_t file = -1; - H5F_t *f = NULL; - H5HG_t *obj = NULL; - uint8_t out[GHEAP_TEST_NOBJS]; - size_t u; - size_t size; - herr_t status; - int nerrors = 0; - char filename[1024]; + hid_t file = -1; + H5F_t *f = NULL; + H5HG_t *obj = NULL; + uint8_t out[GHEAP_TEST_NOBJS]; + size_t u; + size_t size; + herr_t status; + int nerrors = 0; + char filename[1024]; TESTING("partial object removal"); @@ -388,40 +388,40 @@ test_4 (hid_t fapl) /* Open a clean file */ h5_fixname(FILENAME[3], fapl, filename, sizeof filename); if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) - goto error; + goto error; if(NULL == (f = (H5F_t *)H5I_object(file))) { - H5_FAILED(); - puts(" Unable to create file"); - goto error; + H5_FAILED(); + puts(" Unable to create file"); + goto error; } for(u = 0; u < GHEAP_TEST_NOBJS; u++) { - /* Insert */ - size = u % 30 + 100; - HDmemset(out, (int)('A' + u % 26), size); - H5Eclear2(H5E_DEFAULT); - status = H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u); - if (status<0) { - H5_FAILED(); - puts(" Unable to insert object into global heap"); - nerrors++; - } - - /* - * Remove every third one beginning with the second, but after the - * next one has already been inserted. That is, insert A, B, C; - * remove B, insert D, E, F; remove E; etc. - */ - if(1 == (u % 3)) { - H5Eclear2(H5E_DEFAULT); - status = H5HG_remove (f, H5AC_ind_read_dxpl_id, obj + u - 1); - if (status<0) { - H5_FAILED(); - puts(" Unable to remove object"); - nerrors++; - } - HDmemset(obj + u - 1, 0, sizeof *obj); - } + /* Insert */ + size = u % 30 + 100; + HDmemset(out, (int)('A' + u % 26), size); + H5Eclear2(H5E_DEFAULT); + status = H5HG_insert (f, H5AC_ind_read_dxpl_id, size, out, obj + u); + if (status<0) { + H5_FAILED(); + puts(" Unable to insert object into global heap"); + nerrors++; + } + + /* + * Remove every third one beginning with the second, but after the + * next one has already been inserted. That is, insert A, B, C; + * remove B, insert D, E, F; remove E; etc. + */ + if(1 == (u % 3)) { + H5Eclear2(H5E_DEFAULT); + status = H5HG_remove (f, H5AC_ind_read_dxpl_id, obj + u - 1); + if (status<0) { + H5_FAILED(); + puts(" Unable to remove object"); + nerrors++; + } + HDmemset(obj + u - 1, 0, sizeof *obj); + } } /* Release buffer */ @@ -436,27 +436,27 @@ test_4 (hid_t fapl) error: H5E_BEGIN_TRY { - H5Fclose(file); + H5Fclose(file); } H5E_END_TRY; if(obj) HDfree(obj); return MAX(1, nerrors); } - + /*------------------------------------------------------------------------- - * Function: test_ooo_indices + * Function: test_ooo_indices * - * Purpose: Tests that indices can be stored out of order. This can + * Purpose: Tests that indices can be stored out of order. This can * happen when the indices "wrap around" due to many * insertions and deletions (for example, from rewriting a * VL dataset). * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: number of errors + * Failure: number of errors * - * Programmer: Neil Fortner + * Programmer: Neil Fortner * Monday, October 26, 2009 * * Modifications: @@ -466,13 +466,13 @@ test_4 (hid_t fapl) static int test_ooo_indices(hid_t fapl) { - hid_t file = -1; - H5F_t *f = NULL; - unsigned i, j; - H5HG_t *obj = NULL; - herr_t status; - int nerrors=0; - char filename[1024]; + hid_t file = -1; + H5F_t *f = NULL; + unsigned i, j; + H5HG_t *obj = NULL; + herr_t status; + int nerrors=0; + char filename[1024]; TESTING("out of order indices"); @@ -550,24 +550,24 @@ test_ooo_indices(hid_t fapl) error: H5E_BEGIN_TRY { - H5Fclose(file); + H5Fclose(file); } H5E_END_TRY; if(obj) HDfree(obj); return MAX(1, nerrors); } /* end test_ooo_indices */ - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Tests global heap. + * Purpose: Tests global heap. * - * Return: Success: zero + * Return: Success: zero * - * Failure: non-zero + * Failure: non-zero * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Tuesday, March 31, 1998 * * Modifications: @@ -577,8 +577,8 @@ test_ooo_indices(hid_t fapl) int main (void) { - int nerrors=0; - hid_t fapl; + int nerrors=0; + hid_t fapl; h5_reset(); fapl = h5_fileaccess(); diff --git a/test/hyperslab.c b/test/hyperslab.c index 6c754db..feb96bd 100644 --- a/test/hyperslab.c +++ b/test/hyperslab.c @@ -11,108 +11,108 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Robb Matzke <matzke@llnl.gov> - * Friday, October 10, 1997 +/* Programmer: Robb Matzke <matzke@llnl.gov> + * Friday, October 10, 1997 * - * Purpose: Hyperslab operations are rather complex, so this file - * attempts to test them extensively so we can be relatively - * sure they really work. We only test 1d, 2d, and 3d cases - * because testing general dimensionalities would require us to - * rewrite much of the hyperslab stuff. + * Purpose: Hyperslab operations are rather complex, so this file + * attempts to test them extensively so we can be relatively + * sure they really work. We only test 1d, 2d, and 3d cases + * because testing general dimensionalities would require us to + * rewrite much of the hyperslab stuff. */ #include "h5test.h" #include "H5VMprivate.h" -#define TEST_SMALL 0x0001 -#define TEST_MEDIUM 0x0002 +#define TEST_SMALL 0x0001 +#define TEST_MEDIUM 0x0002 -#define VARIABLE_SRC 0 -#define VARIABLE_DST 1 -#define VARIABLE_BOTH 2 +#define VARIABLE_SRC 0 +#define VARIABLE_DST 1 +#define VARIABLE_BOTH 2 #define ARRAY_FILL_SIZE 4 #define ARRAY_OFFSET_NDIMS 3 - + /*------------------------------------------------------------------------- - * Function: init_full + * Function: init_full * - * Purpose: Initialize full array. + * Purpose: Initialize full array. * - * Return: void + * Return: void * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * *------------------------------------------------------------------------- */ static unsigned init_full(uint8_t *array, size_t nx, size_t ny, size_t nz) { - uint8_t acc = 128; - unsigned total = 0; - size_t i, j, k; + uint8_t acc = 128; + unsigned total = 0; + size_t i, j, k; for(i = 0; i < nx; i++) - for(j = 0; j < ny; j++) - for(k = 0; k < nz; k++) { - total += acc; - *array = acc; - acc++; - array++; - } /* end for */ + for(j = 0; j < ny; j++) + for(k = 0; k < nz; k++) { + total += acc; + *array = acc; + acc++; + array++; + } /* end for */ return total; } /* end init_full() */ - + /*------------------------------------------------------------------------- - * Function: print_array + * Function: print_array * - * Purpose: Prints the values in an array + * Purpose: Prints the values in an array * - * Return: void + * Return: void * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * *------------------------------------------------------------------------- */ static void print_array(uint8_t *array, size_t nx, size_t ny, size_t nz) { - size_t i, j, k; + size_t i, j, k; for(i = 0; i < nx; i++) { - if(nz > 1) - printf("i=%lu:\n", (unsigned long)i); - else - printf("%03lu:", (unsigned long)i); - - for(j = 0; j < ny; j++) { - if(nz > 1) - printf("%03lu:", (unsigned long)j); - for(k = 0; k < nz; k++) - printf(" %3d", *array++); - if(nz > 1) - printf("\n"); - } /* end for */ - printf("\n"); + if(nz > 1) + printf("i=%lu:\n", (unsigned long)i); + else + printf("%03lu:", (unsigned long)i); + + for(j = 0; j < ny; j++) { + if(nz > 1) + printf("%03lu:", (unsigned long)j); + for(k = 0; k < nz; k++) + printf(" %3d", *array++); + if(nz > 1) + printf("\n"); + } /* end for */ + printf("\n"); } /* end for */ } /* end print_array() */ - + /*------------------------------------------------------------------------- - * Function: print_ref + * Function: print_ref * - * Purpose: Prints the reference value + * Purpose: Prints the reference value * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: + * Failure: * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * *------------------------------------------------------------------------- */ @@ -129,37 +129,37 @@ print_ref(size_t nx, size_t ny, size_t nz) } /* end if */ } /* end print_ref() */ - + /*------------------------------------------------------------------------- - * Function: test_fill + * Function: test_fill * - * Purpose: Tests the H5VM_hyper_fill() function. + * Purpose: Tests the H5VM_hyper_fill() function. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Saturday, October 11, 1997 + * Programmer: Robb Matzke + * Saturday, October 11, 1997 * *------------------------------------------------------------------------- */ static herr_t test_fill(size_t nx, size_t ny, size_t nz, - size_t di, size_t dj, size_t dk, - size_t ddx, size_t ddy, size_t ddz) + size_t di, size_t dj, size_t dk, + size_t ddx, size_t ddy, size_t ddz) { - uint8_t *dst = NULL; /*destination array */ - hsize_t hs_size[3]; /*hyperslab size */ - hsize_t dst_size[3]; /*destination total size */ + uint8_t *dst = NULL; /*destination array */ + hsize_t hs_size[3]; /*hyperslab size */ + hsize_t dst_size[3]; /*destination total size */ hsize_t dst_offset[3]; /*offset of hyperslab in dest */ - unsigned ref_value; /*reference value */ - unsigned acc; /*accumulator */ - size_t i, j, k, dx, dy, dz; /*counters */ + unsigned ref_value; /*reference value */ + unsigned acc; /*accumulator */ + size_t i, j, k, dx, dy, dz; /*counters */ size_t u, v, w; - unsigned ndims; /*hyperslab dimensionality */ - char dim[64], s[256]; /*temp string */ - unsigned fill_value; /*fill value */ + unsigned ndims; /*hyperslab dimensionality */ + char dim[64], s[256]; /*temp string */ + unsigned fill_value; /*fill value */ /* * Dimensionality. @@ -188,7 +188,7 @@ test_fill(size_t nx, size_t ny, size_t nz, /* Allocate array */ if(NULL == (dst = (uint8_t *)HDcalloc((size_t)1, nx * ny * nz))) TEST_ERROR - + init_full(dst, nx, ny, nz); for(i = 0; i < nx; i += di) { @@ -277,52 +277,52 @@ error: return FAIL; } /* end test_fill() */ - + /*------------------------------------------------------------------------- - * Function: test_copy + * Function: test_copy * - * Purpose: Tests H5VM_hyper_copy(). + * Purpose: Tests H5VM_hyper_copy(). * - * The NX, NY, and NZ arguments are the size for the source and - * destination arrays. You may pass zero for NZ or for NY and - * NZ to test the 2-d and 1-d cases respectively. + * The NX, NY, and NZ arguments are the size for the source and + * destination arrays. You may pass zero for NZ or for NY and + * NZ to test the 2-d and 1-d cases respectively. * - * A hyperslab is copied from/to (depending on MODE) various - * places in SRC and DST beginning at 0,0,0 and increasing - * location by DI,DJ,DK in the x, y, and z directions. + * A hyperslab is copied from/to (depending on MODE) various + * places in SRC and DST beginning at 0,0,0 and increasing + * location by DI,DJ,DK in the x, y, and z directions. * - * For each hyperslab location, various sizes of hyperslabs are - * tried beginning with 1x1x1 and increasing the size in each - * dimension by DDX,DDY,DDZ. + * For each hyperslab location, various sizes of hyperslabs are + * tried beginning with 1x1x1 and increasing the size in each + * dimension by DDX,DDY,DDZ. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * *------------------------------------------------------------------------- */ static herr_t test_copy(int mode, - size_t nx, size_t ny, size_t nz, - size_t di, size_t dj, size_t dk, - size_t ddx, size_t ddy, size_t ddz) + size_t nx, size_t ny, size_t nz, + size_t di, size_t dj, size_t dk, + size_t ddx, size_t ddy, size_t ddz) { - uint8_t *src = NULL; /*source array */ - uint8_t *dst = NULL; /*destination array */ - hsize_t hs_size[3]; /*hyperslab size */ - hsize_t dst_size[3]; /*destination total size */ - hsize_t src_size[3]; /*source total size */ - hsize_t dst_offset[3]; /*offset of hyperslab in dest */ + uint8_t *src = NULL; /*source array */ + uint8_t *dst = NULL; /*destination array */ + hsize_t hs_size[3]; /*hyperslab size */ + hsize_t dst_size[3]; /*destination total size */ + hsize_t src_size[3]; /*source total size */ + hsize_t dst_offset[3]; /*offset of hyperslab in dest */ hsize_t src_offset[3]; /*offset of hyperslab in source */ - unsigned ref_value; /*reference value */ - unsigned acc; /*accumulator */ - hsize_t i, j, k, dx, dy, dz; /*counters */ + unsigned ref_value; /*reference value */ + unsigned acc; /*accumulator */ + hsize_t i, j, k, dx, dy, dz; /*counters */ hsize_t u, v, w; - unsigned ndims; /*hyperslab dimensionality */ - char dim[64], s[256]; /*temp string */ + unsigned ndims; /*hyperslab dimensionality */ + char dim[64], s[256]; /*temp string */ const char *sub; /* @@ -491,7 +491,7 @@ test_copy(int mode, (unsigned long)dy, (unsigned long)dz); print_ref(nx, ny, nz); - printf("\n Destination array is:\n"); + printf("\n Destination array is:\n"); print_array(dst, nx, ny, nz); } /* end if */ goto error; @@ -533,7 +533,7 @@ test_copy(int mode, (unsigned long)dy, (unsigned long)dz); print_ref(nx, ny, nz); - printf("\n Destination array is:\n"); + printf("\n Destination array is:\n"); print_array(dst, nx, ny, nz); } /* end if */ goto error; @@ -561,38 +561,38 @@ error: return FAIL; } /* end test_copy() */ - + /*------------------------------------------------------------------------- - * Function: test_multifill + * Function: test_multifill * - * Purpose: Tests the H5VM_stride_copy() function by using it to fill a - * hyperslab by replicating a multi-byte sequence. This might - * be useful to initialize an array of structs with a default - * struct value, or to initialize an array of floating-point - * values with a default bit-pattern. + * Purpose: Tests the H5VM_stride_copy() function by using it to fill a + * hyperslab by replicating a multi-byte sequence. This might + * be useful to initialize an array of structs with a default + * struct value, or to initialize an array of floating-point + * values with a default bit-pattern. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Saturday, October 11, 1997 + * Programmer: Robb Matzke + * Saturday, October 11, 1997 * *------------------------------------------------------------------------- */ static herr_t test_multifill(size_t nx) { - hsize_t size; - hsize_t src_stride; - hsize_t dst_stride; - char s[64]; + hsize_t size; + hsize_t src_stride; + hsize_t dst_stride; + char s[64]; struct a_struct { int left; double mid; int right; } fill, *src = NULL, *dst = NULL; - hsize_t i, j; + hsize_t i, j; printf("%-70s", "Testing multi-byte fill value"); fflush(stdout); @@ -613,7 +613,7 @@ test_multifill(size_t nx) } /* end for */ /* - * Describe the fill value. The zero stride says to read the same thing + * Describe the fill value. The zero stride says to read the same thing * over and over again. */ fill.left = 55555555; @@ -682,32 +682,32 @@ error: return FAIL; } /* end test_multifill() */ - + /*------------------------------------------------------------------------- - * Function: test_endian + * Function: test_endian * - * Purpose: Tests the H5VM_stride_copy() function by using it to copy an - * array of integers and swap the byte ordering from little - * endian to big endian or vice versa depending on the hardware. + * Purpose: Tests the H5VM_stride_copy() function by using it to copy an + * array of integers and swap the byte ordering from little + * endian to big endian or vice versa depending on the hardware. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Saturday, October 11, 1997 + * Programmer: Robb Matzke + * Saturday, October 11, 1997 * *------------------------------------------------------------------------- */ static herr_t test_endian(size_t nx) { - uint8_t *src = NULL; /*source array */ - uint8_t *dst = NULL; /*destination array */ - hssize_t src_stride[2]; /*source strides */ - hssize_t dst_stride[2]; /*destination strides */ - hsize_t size[2]; /*size vector */ - hsize_t i, j; + uint8_t *src = NULL; /*source array */ + uint8_t *dst = NULL; /*destination array */ + hssize_t src_stride[2]; /*source strides */ + hssize_t dst_stride[2]; /*destination strides */ + hsize_t size[2]; /*size vector */ + hsize_t i, j; printf("%-70s", "Testing endian conversion by stride"); fflush(stdout); @@ -745,7 +745,7 @@ test_endian(size_t nx) printf(" i=%lu, j=%lu\n", (unsigned long)i, (unsigned long)j); printf(" Source array is:\n"); print_array(src, nx, (size_t)4, (size_t)1); - printf("\n Result is:\n"); + printf("\n Result is:\n"); print_array(dst, nx, (size_t)4, (size_t)1); } /* end if */ goto error; @@ -769,31 +769,31 @@ error: return FAIL; } /* end test_endian() */ - + /*------------------------------------------------------------------------- - * Function: test_transpose + * Function: test_transpose * - * Purpose: Copy a 2d array from here to there and transpose the elements - * as it's copied. + * Purpose: Copy a 2d array from here to there and transpose the elements + * as it's copied. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Saturday, October 11, 1997 + * Programmer: Robb Matzke + * Saturday, October 11, 1997 * *------------------------------------------------------------------------- */ static herr_t test_transpose(size_t nx, size_t ny) { - int *src = NULL; - int *dst = NULL; - hsize_t src_stride[2], dst_stride[2]; - hsize_t size[2]; - char s[256]; - hsize_t i, j; + int *src = NULL; + int *dst = NULL; + hsize_t src_stride[2], dst_stride[2]; + hsize_t size[2]; + char s[256]; + hsize_t i, j; sprintf(s, "Testing 2d transpose by stride %4lux%-lud", (unsigned long)nx, (unsigned long)ny); @@ -841,7 +841,7 @@ test_transpose(size_t nx, size_t ny) printf(" %6d", src[i * ny + j]); printf("\n"); } /* end for */ - printf("\n Destination is:\n"); + printf("\n Destination is:\n"); for (i = 0; i < ny; i++) { printf("%3lu:", (unsigned long)i); for(j = 0; j < nx; j++) @@ -870,35 +870,35 @@ error: return FAIL; } /* end test_transpose() */ - + /*------------------------------------------------------------------------- - * Function: test_sub_super + * Function: test_sub_super * - * Purpose: Tests H5VM_stride_copy() to reduce the resolution of an image - * by copying half the pixels in the X and Y directions. Then - * we use the small image and duplicate every pixel to result in - * a 2x2 square. + * Purpose: Tests H5VM_stride_copy() to reduce the resolution of an image + * by copying half the pixels in the X and Y directions. Then + * we use the small image and duplicate every pixel to result in + * a 2x2 square. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Monday, October 13, 1997 + * Programmer: Robb Matzke + * Monday, October 13, 1997 * *------------------------------------------------------------------------- */ static herr_t test_sub_super(size_t nx, size_t ny) { - uint8_t *full = NULL; /*original image */ - uint8_t *half = NULL; /*image at 1/2 resolution */ - uint8_t *twice = NULL; /*2x2 pixels */ - hsize_t src_stride[4]; /*source stride info */ - hsize_t dst_stride[4]; /*destination stride info */ - hsize_t size[4]; /*number of sample points */ - hsize_t i, j; - char s[256]; + uint8_t *full = NULL; /*original image */ + uint8_t *half = NULL; /*image at 1/2 resolution */ + uint8_t *twice = NULL; /*2x2 pixels */ + hsize_t src_stride[4]; /*source stride info */ + hsize_t dst_stride[4]; /*destination stride info */ + hsize_t size[4]; /*number of sample points */ + hsize_t i, j; + char s[256]; sprintf(s, "Testing image sampling %4lux%-4lu to %4lux%-4lu ", (unsigned long)(2 * nx), (unsigned long)(2 * ny), @@ -940,7 +940,7 @@ test_sub_super(size_t nx, size_t ny) (unsigned long)i, (unsigned long)j); printf(" full is:\n"); print_array(full, 2 * nx, 2 * ny, (size_t)1); - printf("\n half is:\n"); + printf("\n half is:\n"); print_array(half, nx, ny, (size_t)1); } /* end if */ goto error; @@ -1003,7 +1003,7 @@ test_sub_super(size_t nx, size_t ny) AT(); printf(" %s\n Half is:\n", s); print_array(half, nx, ny, (size_t)1); - printf("\n Twice is:\n"); + printf("\n Twice is:\n"); print_array(twice, 2 * nx, 2 * ny, (size_t)1); } /* end if */ goto error; @@ -1030,20 +1030,20 @@ error: return FAIL; } /* test_sub_super() */ - + /*------------------------------------------------------------------------- - * Function: test_array_fill + * Function: test_array_fill * - * Purpose: Tests H5VM_array_fill routine by copying a multibyte value + * Purpose: Tests H5VM_array_fill routine by copying a multibyte value * (an array of ints, in our case) into all the elements of an * array. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, April 21, 2003 + * Programmer: Quincey Koziol + * Monday, April 21, 2003 * *------------------------------------------------------------------------- */ @@ -1052,8 +1052,8 @@ test_array_fill(size_t lo, size_t hi) { int *dst = NULL; /* Destination */ int src[ARRAY_FILL_SIZE]; /* Source to duplicate */ - size_t u, v, w; /* Local index variables */ - char s[256]; + size_t u, v, w; /* Local index variables */ + char s[256]; sprintf(s, "array filling %4lu-%-4lu elements", (unsigned long)lo,(unsigned long)hi); TESTING(s); @@ -1091,20 +1091,20 @@ error: return FAIL; } /* end test_array_fill() */ - + /*------------------------------------------------------------------------- - * Function: test_array_offset_n_calc + * Function: test_array_offset_n_calc * - * Purpose: Tests H5VM_array_offset and H5VM_array_calc routines by comparing + * Purpose: Tests H5VM_array_offset and H5VM_array_calc routines by comparing * computed array offsets against calculated ones and then going * back to the coordinates from the offset and checking those. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Quincey Koziol - * Monday, April 21, 2003 + * Programmer: Quincey Koziol + * Monday, April 21, 2003 * *------------------------------------------------------------------------- */ @@ -1114,11 +1114,11 @@ test_array_offset_n_calc(size_t n, size_t x, size_t y, size_t z) hsize_t *a = NULL; hsize_t *temp_a; /* Array for stored calculated offsets */ hsize_t off; /* Offset in array */ - size_t u, v, w; /* Local index variables */ + size_t u, v, w; /* Local index variables */ hsize_t dims[ARRAY_OFFSET_NDIMS]; /* X, Y & X coordinates of array to check */ hsize_t coords[ARRAY_OFFSET_NDIMS]; /* X, Y & X coordinates to check offset of */ hsize_t new_coords[ARRAY_OFFSET_NDIMS]; /* X, Y & X coordinates of offset */ - char s[256]; + char s[256]; sprintf(s, "array offset %4lux%4lux%4lu elements", (unsigned long)z,(unsigned long)y,(unsigned long)x); TESTING(s); @@ -1176,29 +1176,29 @@ error: return FAIL; } /* end test_array_offset_n_calc() */ - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Test various hyperslab operations. Give the words - * `small' and/or `medium' on the command line or only `small' - * is assumed. + * Purpose: Test various hyperslab operations. Give the words + * `small' and/or `medium' on the command line or only `small' + * is assumed. * - * Return: Success: exit(EXIT_SUCCESS) + * Return: Success: exit(EXIT_SUCCESS) * - * Failure: exit(EXIT_FAILURE) + * Failure: exit(EXIT_FAILURE) * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * *------------------------------------------------------------------------- */ int main(int argc, char *argv[]) { - herr_t status; - int nerrors = 0; - unsigned size_of_test; + herr_t status; + int nerrors = 0; + unsigned size_of_test; /* Parse arguments or assume `small' & `medium' */ if(1 == argc) diff --git a/test/istore.c b/test/istore.c index 90dbcfe..f100fe4 100644 --- a/test/istore.c +++ b/test/istore.c @@ -11,13 +11,13 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Robb Matzke <matzke@llnl.gov> - * Wednesday, October 15, 1997 +/* Programmer: Robb Matzke <matzke@llnl.gov> + * Wednesday, October 15, 1997 * - * Purpose: Tests various aspects of indexed raw data storage. + * Purpose: Tests various aspects of indexed raw data storage. */ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ #include "h5test.h" @@ -35,9 +35,9 @@ const char *FILENAME[] = { }; -#define TEST_SMALL 0x0001 -#define TEST_MEDIUM 0x0002 -#define TEST_LARGE 0x0004 +#define TEST_SMALL 0x0001 +#define TEST_MEDIUM 0x0002 +#define TEST_LARGE 0x0004 /* The datatype of the dataset operated on by this test */ #define TEST_DATATYPE H5T_NATIVE_UCHAR @@ -48,19 +48,19 @@ const char *FILENAME[] = { hsize_t chunk_dims[H5O_LAYOUT_NDIMS]; hsize_t zero[H5O_LAYOUT_NDIMS]; - + /*------------------------------------------------------------------------- - * Function: is_sparse + * Function: is_sparse * - * Purpose: Determines if the file system of the current working - * directory supports holes. + * Purpose: Determines if the file system of the current working + * directory supports holes. * - * Return: Success: Non-zero if holes are supported; zero - * otherwise. + * Return: Success: Non-zero if holes are supported; zero + * otherwise. * - * Failure: zero + * Failure: zero * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, July 15, 1998 * *------------------------------------------------------------------------- @@ -68,8 +68,8 @@ hsize_t zero[H5O_LAYOUT_NDIMS]; static int is_sparse(void) { - int fd; - h5_stat_t sb; + int fd; + h5_stat_t sb; if ((fd = HDopen("x.h5", O_RDWR|O_TRUNC|O_CREAT, H5_POSIX_CREATE_MODE_RW)) < 0) return 0; if (HDlseek(fd, (off_t)(1024*1024), SEEK_SET)!=1024*1024) return 0; @@ -84,16 +84,16 @@ is_sparse(void) #endif } - + /*------------------------------------------------------------------------- - * Function: print_array + * Function: print_array * - * Purpose: Prints the values in an array + * Purpose: Prints the values in an array * - * Return: void + * Return: void * - * Programmer: Robb Matzke - * Friday, October 10, 1997 + * Programmer: Robb Matzke + * Friday, October 10, 1997 * * Modifications: * @@ -102,41 +102,41 @@ is_sparse(void) static void print_array(uint8_t *array, size_t nx, size_t ny, size_t nz) { - size_t i, j, k; + size_t i, j, k; for (i = 0; i < nx; i++) { - if (nz > 1) { - fprintf(stderr,"i=%lu:\n", (unsigned long)i); - } else { - fprintf(stderr,"%03lu:", (unsigned long)i); - } - - for (j = 0; j < ny; j++) { - if (nz > 1) - fprintf(stderr,"%03lu:", (unsigned long)j); - for (k = 0; k < nz; k++) { - fprintf(stderr," %3d", *array++); - } - if (nz > 1) - fprintf(stderr,"\n"); - } - fprintf(stderr,"\n"); + if (nz > 1) { + fprintf(stderr,"i=%lu:\n", (unsigned long)i); + } else { + fprintf(stderr,"%03lu:", (unsigned long)i); + } + + for (j = 0; j < ny; j++) { + if (nz > 1) + fprintf(stderr,"%03lu:", (unsigned long)j); + for (k = 0; k < nz; k++) { + fprintf(stderr," %3d", *array++); + } + if (nz > 1) + fprintf(stderr,"\n"); + } + fprintf(stderr,"\n"); } } - + /*------------------------------------------------------------------------- - * Function: new_object + * Function: new_object * - * Purpose: Creates a new object that refers to a indexed storage of raw - * data. No raw data is stored. + * Purpose: Creates a new object that refers to a indexed storage of raw + * data. No raw data is stored. * - * Return: Success: ID of dataset + * Return: Success: ID of dataset * - * Failure: -1 + * Failure: -1 * - * Programmer: Robb Matzke - * Wednesday, October 15, 1997 + * Programmer: Robb Matzke + * Wednesday, October 15, 1997 * * Modifications: * Converted to use datasets instead of directly messing with @@ -180,19 +180,19 @@ error: return -1; } - + /*------------------------------------------------------------------------- - * Function: test_create + * Function: test_create * - * Purpose: Creates a named object that refers to indexed storage of raw - * data. No raw data is stored. + * Purpose: Creates a named object that refers to indexed storage of raw + * data. No raw data is stored. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Wednesday, October 15, 1997 + * Programmer: Robb Matzke + * Wednesday, October 15, 1997 * * Modifications: * @@ -215,9 +215,9 @@ test_create(hid_t f, const char *prefix) dims[u] = my_chunk_dims[u] = 2; /* Create chunked dataset of this dimensionality */ - HDsnprintf(name, sizeof name, "%s_%02u", prefix, u); - if ((dataset=new_object(f, name, (int)u, dims, my_chunk_dims)) < 0) - return FAIL; + HDsnprintf(name, sizeof name, "%s_%02u", prefix, u); + if ((dataset=new_object(f, name, (int)u, dims, my_chunk_dims)) < 0) + return FAIL; /* Close dataset created */ if(H5Dclose(dataset) < 0) @@ -228,20 +228,20 @@ test_create(hid_t f, const char *prefix) return SUCCEED; } - + /*------------------------------------------------------------------------- - * Function: test_extend + * Function: test_extend * - * Purpose: Creates an empty object and then writes to it in such a way - * as to always extend the object's domain without creating - * holes and without causing the object to become concave. + * Purpose: Creates an empty object and then writes to it in such a way + * as to always extend the object's domain without creating + * holes and without causing the object to become concave. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Wednesday, October 15, 1997 + * Programmer: Robb Matzke + * Wednesday, October 15, 1997 * * Modifications: * @@ -249,35 +249,35 @@ test_create(hid_t f, const char *prefix) */ static herr_t test_extend(hid_t f, const char *prefix, - size_t nx, size_t ny, size_t nz) + size_t nx, size_t ny, size_t nz) { hid_t dataset; /* Dataset ID */ hid_t fspace; /* Dataset's file dataspace */ hid_t mspace; /* Dataset's memory dataspace */ - size_t i, j, k, ctr; - int ndims; - uint8_t *buf = NULL, *check = NULL, *whole = NULL; - char dims[64], s[256], name[256]; - hsize_t offset[3]; - hsize_t max_corner[3]; - hsize_t size[3]; - hsize_t whole_size[3]; - hsize_t nelmts; + size_t i, j, k, ctr; + int ndims; + uint8_t *buf = NULL, *check = NULL, *whole = NULL; + char dims[64], s[256], name[256]; + hsize_t offset[3]; + hsize_t max_corner[3]; + hsize_t size[3]; + hsize_t whole_size[3]; + hsize_t nelmts; if (!nz) { - if (!ny) { - ndims = 1; - ny = nz = 1; - sprintf(dims, "%lu", (unsigned long) nx); - } else { - ndims = 2; - nz = 1; - sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny); - } + if (!ny) { + ndims = 1; + ny = nz = 1; + sprintf(dims, "%lu", (unsigned long) nx); + } else { + ndims = 2; + nz = 1; + sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny); + } } else { - ndims = 3; - sprintf(dims, "%lux%lux%lu", - (unsigned long) nx, (unsigned long) ny, (unsigned long) nz); + ndims = 3; + sprintf(dims, "%lux%lux%lu", + (unsigned long) nx, (unsigned long) ny, (unsigned long) nz); } sprintf(s, "istore extend: %s", dims); @@ -296,57 +296,57 @@ test_extend(hid_t f, const char *prefix, /* Build the new empty object */ sprintf(name, "%s_%s", prefix, dims); if ((dataset=new_object(f, name, ndims, whole_size, whole_size)) < 0) { - fprintf(stderr," Cannot create %u-d object `%s'\n", ndims, name); - goto error; + fprintf(stderr," Cannot create %u-d object `%s'\n", ndims, name); + goto error; } /* Get dataset's dataspace */ if((fspace=H5Dget_space(dataset)) < 0) TEST_ERROR; for (ctr = 0; - H5VM_vector_lt_u((unsigned)ndims, max_corner, whole_size); - ctr++) { - - /* Size and location */ - if (0 == ctr) { - offset[0] = offset[1] = offset[2] = 0; - size[0] = size[1] = size[2] = 1; - nelmts = 1; - } else { - for (i=0, nelmts=1; i<(size_t)ndims; i++) { - if (ctr % (size_t)ndims == i) { - offset[i] = max_corner[i]; - size[i] = MIN(1, whole_size[i] - offset[i]); - } else { - offset[i] = 0; - size[i] = max_corner[i]; - } - nelmts *= size[i]; - } - } + H5VM_vector_lt_u((unsigned)ndims, max_corner, whole_size); + ctr++) { + + /* Size and location */ + if (0 == ctr) { + offset[0] = offset[1] = offset[2] = 0; + size[0] = size[1] = size[2] = 1; + nelmts = 1; + } else { + for (i=0, nelmts=1; i<(size_t)ndims; i++) { + if (ctr % (size_t)ndims == i) { + offset[i] = max_corner[i]; + size[i] = MIN(1, whole_size[i] - offset[i]); + } else { + offset[i] = 0; + size[i] = max_corner[i]; + } + nelmts *= size[i]; + } + } #if 0 - if (0 == ctr) - fprintf(stderr,"\n"); - fprintf(stderr," Insert: ctr=%lu, corner=(%ld", (unsigned long)ctr, (long)offset[0]); - if (ndims > 1) - fprintf(stderr,",%ld", (long)offset[1]); - if (ndims > 2) - fprintf(stderr,",%ld", (long)offset[2]); - fprintf(stderr,"), size=(%lu", (unsigned long)size[0]); - if (ndims > 1) - fprintf(stderr,",%lu", (unsigned long)size[1]); - if (ndims > 2) - fprintf(stderr,",%lu", (unsigned long)size[2]); - fprintf(stderr,"), %lu element%s", (unsigned long)nelmts, 1 == nelmts ? "" : "s"); - if (0 == nelmts) - fprintf(stderr," *SKIPPED*"); - fprintf(stderr,"\n"); + if (0 == ctr) + fprintf(stderr,"\n"); + fprintf(stderr," Insert: ctr=%lu, corner=(%ld", (unsigned long)ctr, (long)offset[0]); + if (ndims > 1) + fprintf(stderr,",%ld", (long)offset[1]); + if (ndims > 2) + fprintf(stderr,",%ld", (long)offset[2]); + fprintf(stderr,"), size=(%lu", (unsigned long)size[0]); + if (ndims > 1) + fprintf(stderr,",%lu", (unsigned long)size[1]); + if (ndims > 2) + fprintf(stderr,",%lu", (unsigned long)size[2]); + fprintf(stderr,"), %lu element%s", (unsigned long)nelmts, 1 == nelmts ? "" : "s"); + if (0 == nelmts) + fprintf(stderr," *SKIPPED*"); + fprintf(stderr,"\n"); #endif - /* Fill the source array */ - if (0 == nelmts) continue; - HDmemset(buf, (signed)(128+ctr), (size_t)nelmts); + /* Fill the source array */ + if (0 == nelmts) continue; + HDmemset(buf, (signed)(128+ctr), (size_t)nelmts); /* Create dataspace for selection in memory */ if((mspace=H5Screate_simple(1,&nelmts,NULL)) < 0) TEST_ERROR; @@ -354,72 +354,72 @@ test_extend(hid_t f, const char *prefix, /* Select region in file dataspace */ if(H5Sselect_hyperslab(fspace,H5S_SELECT_SET,offset,NULL,size,NULL) < 0) TEST_ERROR; - /* Write to disk */ - if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { - H5_FAILED(); - fprintf(stderr," Write failed: ctr=%lu\n", (unsigned long)ctr); - goto error; - } - - /* Read from disk */ - HDmemset(check, 0xff, (size_t)nelmts); - if (H5Dread(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, check) < 0) { - H5_FAILED(); - fprintf(stderr," Read failed: ctr=%lu\n", (unsigned long)ctr); - goto error; - } - if (HDmemcmp(buf, check, (size_t)nelmts)) { - H5_FAILED(); - fprintf(stderr," Read check failed: ctr=%lu\n", (unsigned long)ctr); - fprintf(stderr," Wrote:\n"); - print_array(buf, (size_t)size[0], (size_t)size[1], - (size_t)size[2]); - fprintf(stderr," Read:\n"); - print_array(check, (size_t)size[0], (size_t)size[1], - (size_t)size[2]); - goto error; - } + /* Write to disk */ + if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { + H5_FAILED(); + fprintf(stderr," Write failed: ctr=%lu\n", (unsigned long)ctr); + goto error; + } + + /* Read from disk */ + HDmemset(check, 0xff, (size_t)nelmts); + if (H5Dread(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, check) < 0) { + H5_FAILED(); + fprintf(stderr," Read failed: ctr=%lu\n", (unsigned long)ctr); + goto error; + } + if (HDmemcmp(buf, check, (size_t)nelmts)) { + H5_FAILED(); + fprintf(stderr," Read check failed: ctr=%lu\n", (unsigned long)ctr); + fprintf(stderr," Wrote:\n"); + print_array(buf, (size_t)size[0], (size_t)size[1], + (size_t)size[2]); + fprintf(stderr," Read:\n"); + print_array(check, (size_t)size[0], (size_t)size[1], + (size_t)size[2]); + goto error; + } /* Close memory dataspace */ if(H5Sclose(mspace) < 0) TEST_ERROR; - /* Write to `whole' buffer for later checking */ - H5VM_hyper_copy((unsigned)ndims, size, - whole_size, offset, whole, /*dst*/ - size, H5VM_ZERO, buf); /*src*/ + /* Write to `whole' buffer for later checking */ + H5VM_hyper_copy((unsigned)ndims, size, + whole_size, offset, whole, /*dst*/ + size, H5VM_ZERO, buf); /*src*/ - /* Update max corner */ - for (i=0; i<(size_t)ndims; i++) - max_corner[i] = MAX(max_corner[i], offset[i]+size[i]); + /* Update max corner */ + for (i=0; i<(size_t)ndims; i++) + max_corner[i] = MAX(max_corner[i], offset[i]+size[i]); } /* Now read the entire array back out and check it */ HDmemset(buf, 0xff, nx * ny * nz); if (H5Dread(dataset, TEST_DATATYPE, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { - H5_FAILED(); - fprintf(stderr," Read failed for whole array.\n"); - goto error; + H5_FAILED(); + fprintf(stderr," Read failed for whole array.\n"); + goto error; } for (i=0; i<nx; i++) { - for (j=0; j<ny; j++) { - for (k=0; k<nz; k++) { - if (whole[i*ny*nz + j*nz + k] != buf[i*ny*nz + j*nz + k]) { - H5_FAILED(); - fprintf(stderr," Check failed at i=%lu", (unsigned long)i); - if (ndims > 1) { - fprintf(stderr,", j=%lu", (unsigned long)j); - } - if (ndims > 2) { - fprintf(stderr,", k=%lu", (unsigned long)k); - } - fprintf(stderr,"\n Check array is:\n"); - print_array(whole, nx, ny, nz); - fprintf(stderr," Value read is:\n"); - print_array(buf, nx, ny, nz); - goto error; - } - } - } + for (j=0; j<ny; j++) { + for (k=0; k<nz; k++) { + if (whole[i*ny*nz + j*nz + k] != buf[i*ny*nz + j*nz + k]) { + H5_FAILED(); + fprintf(stderr," Check failed at i=%lu", (unsigned long)i); + if (ndims > 1) { + fprintf(stderr,", j=%lu", (unsigned long)j); + } + if (ndims > 2) { + fprintf(stderr,", k=%lu", (unsigned long)k); + } + fprintf(stderr,"\n Check array is:\n"); + print_array(whole, nx, ny, nz); + fprintf(stderr," Value read is:\n"); + print_array(buf, nx, ny, nz); + goto error; + } + } + } } /* Close dataset's dataspace */ @@ -443,19 +443,19 @@ error: return FAIL; } - + /*------------------------------------------------------------------------- - * Function: test_sparse + * Function: test_sparse * - * Purpose: Creates a sparse matrix consisting of NBLOCKS randomly placed - * blocks each of size NX,NY,NZ. + * Purpose: Creates a sparse matrix consisting of NBLOCKS randomly placed + * blocks each of size NX,NY,NZ. * - * Return: Success: SUCCEED + * Return: Success: SUCCEED * - * Failure: FAIL + * Failure: FAIL * - * Programmer: Robb Matzke - * Wednesday, October 22, 1997 + * Programmer: Robb Matzke + * Wednesday, October 22, 1997 * * Modifications: * @@ -463,34 +463,34 @@ error: */ static herr_t test_sparse(hid_t f, const char *prefix, size_t nblocks, - size_t nx, size_t ny, size_t nz, int skip_test) + size_t nx, size_t ny, size_t nz, int skip_test) { hid_t dataset; /* Dataset ID */ hid_t fspace; /* Dataset's file dataspace */ hid_t mspace; /* Dataset's memory dataspace */ - int ndims; - hsize_t ctr; - char dims[64], s[256], name[256]; - hsize_t offset[3]; - hsize_t size[3], total = 0; - uint8_t *buf = NULL; - hsize_t whole_size[3]; /* Size of dataset's dataspace */ + int ndims; + hsize_t ctr; + char dims[64], s[256], name[256]; + hsize_t offset[3]; + hsize_t size[3], total = 0; + uint8_t *buf = NULL; + hsize_t whole_size[3]; /* Size of dataset's dataspace */ size_t u; /* Local index variable */ if (!nz) { - if (!ny) { - ndims = 1; - ny = nz = 1; - sprintf(dims, "%lu", (unsigned long) nx); - } else { - ndims = 2; - nz = 1; - sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny); - } + if (!ny) { + ndims = 1; + ny = nz = 1; + sprintf(dims, "%lu", (unsigned long) nx); } else { - ndims = 3; - sprintf(dims, "%lux%lux%lu", - (unsigned long) nx, (unsigned long) ny, (unsigned long) nz); + ndims = 2; + nz = 1; + sprintf(dims, "%lux%lu", (unsigned long) nx, (unsigned long) ny); + } + } else { + ndims = 3; + sprintf(dims, "%lux%lux%lu", + (unsigned long) nx, (unsigned long) ny, (unsigned long) nz); } sprintf(s, "istore sparse: %s", dims); @@ -514,8 +514,8 @@ test_sparse(hid_t f, const char *prefix, size_t nblocks, /* Build the new empty object */ sprintf(name, "%s_%s", prefix, dims); if ((dataset=new_object(f, name, ndims, whole_size, chunk_dims)) < 0) { - printf(" Cannot create %u-d object `%s'\n", ndims, name); - goto error; + printf(" Cannot create %u-d object `%s'\n", ndims, name); + goto error; } /* Get dataset's dataspace */ @@ -532,29 +532,29 @@ test_sparse(hid_t f, const char *prefix, size_t nblocks, /* Select region in file dataspace */ if(H5Sselect_hyperslab(fspace,H5S_SELECT_SET,offset,NULL,size,NULL) < 0) TEST_ERROR; - /* write to disk */ - if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { - H5_FAILED(); - printf(" Write failed: ctr=%lu\n", (unsigned long)ctr); - printf(" offset=(%lu", (unsigned long) (offset[0])); - if (ndims > 1) - printf(",%lu", (unsigned long) (offset[1])); - if (ndims > 2) - printf(",%lu", (unsigned long) (offset[2])); - printf("), size=(%lu", (unsigned long) (size[0])); - if (ndims > 1) - printf(",%lu", (unsigned long) (size[1])); - if (ndims > 2) - printf(",%lu", (unsigned long) (size[2])); - printf(")\n"); - goto error; - } - total += nx * ny * nz; + /* write to disk */ + if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { + H5_FAILED(); + printf(" Write failed: ctr=%lu\n", (unsigned long)ctr); + printf(" offset=(%lu", (unsigned long) (offset[0])); + if (ndims > 1) + printf(",%lu", (unsigned long) (offset[1])); + if (ndims > 2) + printf(",%lu", (unsigned long) (offset[2])); + printf("), size=(%lu", (unsigned long) (size[0])); + if (ndims > 1) + printf(",%lu", (unsigned long) (size[1])); + if (ndims > 2) + printf(",%lu", (unsigned long) (size[2])); + printf(")\n"); + goto error; + } + total += nx * ny * nz; #if 0 - HDfprintf(stderr,"ctr: ctr=%Zu, total=%Zu\n", ctr, total); + HDfprintf(stderr,"ctr: ctr=%Zu, total=%Zu\n", ctr, total); #endif - /* We don't test reading yet.... */ + /* We don't test reading yet.... */ } /* Close memory dataspace */ @@ -575,18 +575,18 @@ error: return FAIL; } - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Tests indexed storage stuff. + * Purpose: Tests indexed storage stuff. * - * Return: Success: exit(EXIT_SUCCESS) + * Return: Success: exit(EXIT_SUCCESS) * - * Failure: exit(EXIT_FAILURE) + * Failure: exit(EXIT_FAILURE) * - * Programmer: Robb Matzke - * Wednesday, October 15, 1997 + * Programmer: Robb Matzke + * Wednesday, October 15, 1997 * * Modifications: * @@ -595,12 +595,12 @@ error: int main(int argc, char *argv[]) { - hid_t fapl=-1, file=-1, fcpl=-1; - herr_t status; - int nerrors = 0; - unsigned size_of_test; + hid_t fapl=-1, file=-1, fcpl=-1; + herr_t status; + int nerrors = 0; + unsigned size_of_test; unsigned u; /* Local index variable */ - char filename[1024]; + char filename[1024]; int skip_test = 0; int has_sparse_support = 0; @@ -608,7 +608,7 @@ main(int argc, char *argv[]) if (1 == argc) { size_of_test = TEST_SMALL | TEST_MEDIUM | TEST_LARGE; } else { - int i; + int i; for (i = 1, size_of_test = 0; i < argc; i++) { if (!strcmp(argv[i], "small")) { size_of_test |= TEST_SMALL; @@ -6920,6 +6920,7 @@ test_mf_fs_gone(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) H5FD_mem_t type; /* File allocation type */ H5FS_stat_t fs_stat; /* Information for free-space manager */ haddr_t addr1, addr2, addr3, addr4; /* File address for H5FD_MEM_SUPER */ + haddr_t addrx; H5FD_mem_t fs_type; hbool_t contig_addr_vfd; hbool_t ran_H5MF_tidy_self_referential_fsm_hack = FALSE; @@ -7054,6 +7055,12 @@ test_mf_fs_gone(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) if(H5MF_xfree(f, type, H5AC_ind_read_dxpl_id, addr4, (hsize_t)TBLOCK_SIZE4) < 0) FAIL_STACK_ERROR + if(!new_format) { + /* Need to take up this space so that the free-space manager will go away */ + if(HADDR_UNDEF == (addrx = H5MF_alloc(f, type, H5AC_ind_read_dxpl_id, (hsize_t)103))) + FAIL_STACK_ERROR + } + /* The H5FD_MEM_SUPER free-space manager will go away at H5MF_close() */ if(H5Fclose(file) < 0) FAIL_STACK_ERROR @@ -7065,7 +7072,6 @@ test_mf_fs_gone(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) /* Get a pointer to the internal file object */ if(NULL == (f = (H5F_t *)H5I_object(file))) FAIL_STACK_ERROR - /* Verify that the H5FD_MEM_SUPER free-space manager is not there */ if(H5F_addr_defined(f->shared->fs_addr[fs_type])) TEST_ERROR diff --git a/test/objcopy.c b/test/objcopy.c index 216d111..e88d508 100644 --- a/test/objcopy.c +++ b/test/objcopy.c @@ -12,38 +12,54 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Peter X. Cao - * May 01, 2005 + * Programmer: Peter X. Cao + * May 01, 2005 * - * Purpose: Test H5Ocopy(). + * Purpose: Test H5Ocopy(). */ #include "testhdf5.h" #include "H5srcdir.h" +#include "H5Bprivate.h" +#include "H5Iprivate.h" +#include "H5Pprivate.h" + +#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_TESTING +#include "H5Fpkg.h" /* File access */ + /* * This file needs to access private information from the H5S package. * This file also needs to access the dataspace testing code. */ -#define H5S_FRIEND /*suppress error about including H5Spkg */ +#define H5S_FRIEND /*suppress error about including H5Spkg */ #define H5S_TESTING -#include "H5Spkg.h" /* Dataspaces */ +#include "H5Spkg.h" /* Dataspaces */ /* * This file needs to access private information from the H5P package. * This file also needs to access the property list testing code. */ -#define H5P_FRIEND /*suppress error about including H5Ppkg */ +#define H5P_FRIEND /*suppress error about including H5Ppkg */ #define H5P_TESTING -#include "H5Ppkg.h" /* Property Lists */ +#include "H5Ppkg.h" /* Property Lists */ /* * This file needs to access private information from the H5D package. * This file also needs to access the dataset testing code. */ -#define H5D_FRIEND /*suppress error about including H5Dpkg */ +#define H5D_FRIEND /*suppress error about including H5Dpkg */ #define H5D_TESTING -#include "H5Dpkg.h" /* Datasets */ +#include "H5Dpkg.h" /* Datasets */ + +/* + * This file needs to access private information from the H5O package. + * This file also needs to access the dataspace testing code. + */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#define H5O_TESTING +#include "H5Opkg.h" /* Object header */ const char *FILENAME[] = { @@ -51,6 +67,8 @@ const char *FILENAME[] = { "objcopy_dst", "objcopy_ext", "objcopy_src2", + "verbound_src", + "verbound_dst", NULL }; @@ -64,76 +82,77 @@ const char *FILENAME[] = { #define CONFIG_DENSE 16 #define MAX_CONFIGURATION 31 -#define FILE_EXT "objcopy_ext.dat" +#define FILE_EXT "objcopy_ext.dat" /* The fill_old.h5 is generated from gen_old_fill.c in HDF5 'test' directory * for version 1.4(after 1.4.3). To get this data file, simply compile * gen_old_fill.c with HDF5 library (before v1.5) and run it. */ #define FILE_OLD_LAYOUT "fill_old.h5" -#define NAME_DATATYPE_SIMPLE "H5T_NATIVE_INT" -#define NAME_DATATYPE_SIMPLE2 "H5T_NATIVE_INT-2" -#define NAME_DATATYPE_VL "vlen of int" -#define NAME_DATATYPE_VL_VL "vlen of vlen of int" -#define NAME_DATASET_SIMPLE "dataset_simple" +#define NAME_DATATYPE_SIMPLE "H5T_NATIVE_INT" +#define NAME_DATATYPE_SIMPLE2 "H5T_NATIVE_INT-2" +#define NAME_DATATYPE_VL "vlen of int" +#define NAME_DATATYPE_VL_VL "vlen of vlen of int" +#define NAME_DATASET_SIMPLE "dataset_simple" #define NAME_DATASET_SIMPLE2 "dataset_simple_copy" #define NAME_DATASET_SIMPLE3 "dataset_simple_another_copy" -#define NAME_DATASET_COMPOUND "dataset_compound" -#define NAME_DATASET_CHUNKED "dataset_chunked" -#define NAME_DATASET_CHUNKED_SINGLE "dataset_chunked_single" -#define NAME_DATASET_CHUNKED2 "dataset_chunked2" -#define NAME_DATASET_CHUNKED2_SINGLE "dataset_chunked2_single" -#define NAME_DATASET_CHUNKED3 "dataset_chunked3" -#define NAME_DATASET_CHUNKED3_SINGLE "dataset_chunked3_single" -#define NAME_DATASET_CHUNKED4 "dataset_chunked4" -#define NAME_DATASET_CHUNKED4_SINGLE "dataset_chunked4_single" -#define NAME_DATASET_COMPACT "dataset_compact" -#define NAME_DATASET_EXTERNAL "dataset_ext" -#define NAME_DATASET_NAMED_DTYPE "dataset_named_dtype" -#define NAME_DATASET_NAMED_DTYPE2 "dataset_named_dtype2" -#define NAME_DATASET_MULTI_OHDR "dataset_multi_ohdr" -#define NAME_DATASET_MULTI_OHDR2 "dataset_multi_ohdr2" -#define NAME_DATASET_VL "dataset_vl" -#define NAME_DATASET_VL2 "dataset_vl2" -#define NAME_DATASET_VL_VL "dataset_vl_vl" -#define NAME_DATASET_VL_VL2 "dataset_vl_vl2" -#define NAME_DATASET_CMPD_VL "dataset_cmpd_vl" -#define NAME_DATASET_SUB_SUB "/g0/g00/g000/dataset_simple" -#define NAME_GROUP_UNCOPIED "/uncopied" -#define NAME_GROUP_EMPTY "/empty" -#define NAME_GROUP_TOP "/g0" +#define NAME_DATASET_COMPOUND "dataset_compound" +#define NAME_DATASET_CHUNKED "dataset_chunked" +#define NAME_DATASET_CHUNKED_SINGLE "dataset_chunked_single" +#define NAME_DATASET_CHUNKED2 "dataset_chunked2" +#define NAME_DATASET_CHUNKED2_SINGLE "dataset_chunked2_single" +#define NAME_DATASET_CHUNKED3 "dataset_chunked3" +#define NAME_DATASET_CHUNKED3_SINGLE "dataset_chunked3_single" +#define NAME_DATASET_CHUNKED4 "dataset_chunked4" +#define NAME_DATASET_CHUNKED4_SINGLE "dataset_chunked4_single" +#define NAME_DATASET_COMPACT "dataset_compact" +#define NAME_DATASET_EXTERNAL "dataset_ext" +#define NAME_DATASET_NAMED_DTYPE "dataset_named_dtype" +#define NAME_DATASET_NAMED_DTYPE2 "dataset_named_dtype2" +#define NAME_DATASET_MULTI_OHDR "dataset_multi_ohdr" +#define NAME_DATASET_MULTI_OHDR2 "dataset_multi_ohdr2" +#define NAME_DATASET_VL "dataset_vl" +#define NAME_DATASET_VL2 "dataset_vl2" +#define NAME_DATASET_VL_VL "dataset_vl_vl" +#define NAME_DATASET_VL_VL2 "dataset_vl_vl2" +#define NAME_DATASET_CMPD_VL "dataset_cmpd_vl" +#define NAME_DATASET_SUB_SUB "/g0/g00/g000/dataset_simple" +#define NAME_GROUP_UNCOPIED "/uncopied" +#define NAME_GROUP_EMPTY "/empty" +#define NAME_GROUP_TOP "/g0" #define NAME_GROUP_TOP2 "/g1" #define NAME_GROUP_TOP3 "/g2" #define NAME_GROUP_TOP4 "/g3" -#define NAME_GROUP_SUB "/g0/g00" -#define NAME_GROUP_SUB_2 "/g0/g01" -#define NAME_GROUP_SUB_SUB "/g0/g00/g000" -#define NAME_GROUP_SUB_SUB2 "g000" -#define NAME_GROUP_DATASET "/g0/dataset_simple" -#define NAME_GROUP_LINK "/g_links" -#define NAME_GROUP_LINK2 "/g_links2" -#define NAME_GROUP_LOOP "g_loop" -#define NAME_GROUP_LOOP2 "g_loop2" -#define NAME_GROUP_LOOP3 "g_loop3" -#define NAME_GROUP_REF "ref_grp" -#define NAME_LINK_DATASET "/g_links/dataset_simple" -#define NAME_LINK_HARD "/g_links/hard_link_to_dataset_simple" -#define NAME_LINK_SOFT "/g_links/soft_link_to_dataset_simple" -#define NAME_LINK_SOFT2 "/g_links2/soft_link_to_dataset_simple" -#define NAME_LINK_EXTERN "/g_links/external_link_to_dataset_simple" +#define NAME_GROUP_SUB "/g0/g00" +#define NAME_GROUP_SUB_2 "/g0/g01" +#define NAME_GROUP_SUB_SUB "/g0/g00/g000" +#define NAME_GROUP_SUB_SUB2 "g000" +#define NAME_GROUP_DATASET "/g0/dataset_simple" +#define NAME_GROUP_LINK "/g_links" +#define NAME_GROUP_LINK2 "/g_links2" +#define NAME_GROUP_LOOP "g_loop" +#define NAME_GROUP_LOOP2 "g_loop2" +#define NAME_GROUP_LOOP3 "g_loop3" +#define NAME_GROUP_REF "ref_grp" +#define NAME_LINK_DATASET "/g_links/dataset_simple" +#define NAME_LINK_HARD "/g_links/hard_link_to_dataset_simple" +#define NAME_LINK_SOFT "/g_links/soft_link_to_dataset_simple" +#define NAME_LINK_SOFT2 "/g_links2/soft_link_to_dataset_simple" +#define NAME_LINK_EXTERN "/g_links/external_link_to_dataset_simple" #define NAME_LINK_EXTERN2 "/g_links2/external_link_to_dataset_simple" -#define NAME_LINK_SOFT_DANGLE "/g_links/soft_link_to_nowhere" -#define NAME_LINK_SOFT_DANGLE2 "/g_links2/soft_link_to_nowhere" +#define NAME_LINK_SOFT_DANGLE "/g_links/soft_link_to_nowhere" +#define NAME_LINK_SOFT_DANGLE2 "/g_links2/soft_link_to_nowhere" #define NAME_LINK_EXTERN_DANGLE "/g_links/external_link_to_nowhere" #define NAME_LINK_EXTERN_DANGLE2 "/g_links2/external_link_to_nowhere" -#define NAME_OLD_FORMAT "/dset1" +#define NAME_OLD_FORMAT "/dset1" +#define NAME_DSET_NULL "DSET_NULL" #define NAME_BUF_SIZE 1024 #define ATTR_NAME_LEN 80 #define DIM_SIZE_1 12 #define DIM_SIZE_2 6 -#define MAX_DIM_SIZE_1 100 -#define MAX_DIM_SIZE_2 80 +#define MAX_DIM_SIZE_1 100 +#define MAX_DIM_SIZE_2 80 #define CHUNK_SIZE_1 5 /* Not an even fraction of dimension sizes, so we test copying partial chunks */ #define CHUNK_SIZE_2 5 #define NUM_SUB_GROUPS 20 @@ -160,7 +179,7 @@ static int compare_datasets(hid_t did, hid_t did2, hid_t pid, const void *wbuf); static int compare_groups(hid_t gid, hid_t gid2, hid_t pid, int depth, unsigned copy_flags); -static int +static int compare_idx_type(hid_t fapl, hid_t did, H5D_chunk_index_t new_type, H5D_chunk_index_t old_type); static int @@ -170,7 +189,7 @@ attach_attribute_compound_vlstr(hid_t loc_id); static int compare_attribute_compound_vlstr(hid_t loc, hid_t loc2); - + /*------------------------------------------------------------------------- * Function: addr_insert * @@ -204,7 +223,7 @@ addr_insert(H5O_info_t *oi) idtab_g.obj[n] = oi->addr; } /* end addr_insert() */ - + /*------------------------------------------------------------------------- * Function: addr_lookup * @@ -233,7 +252,7 @@ addr_lookup(H5O_info_t *oi) return FALSE; } /* end addr_lookup() */ - + /*------------------------------------------------------------------------- * Function: addr_reset * @@ -255,7 +274,7 @@ addr_reset(void) idtab_g.nalloc = idtab_g.nobjs = 0; } /* end addr_reset() */ - + /*------------------------------------------------------------------------- * Function: attach_ref_attr * @@ -316,7 +335,7 @@ error: return(-1); } - + /*------------------------------------------------------------------------- * Function: attach_reg_ref_attr * @@ -393,7 +412,7 @@ error: return(-1); } - + /*------------------------------------------------------------------------- * Function: create_reg_ref_dataset * @@ -488,7 +507,7 @@ error: return(-1); } - + /*------------------------------------------------------------------------- * Function: attach_attribute_vl * @@ -550,13 +569,13 @@ done: } /* end of attach_attribute_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_attach_attributes * * Purpose: Attach NUM_ATTRIBUTES attributes to the object to be copied * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * * Programmer: Peter Cao * Friday, September 30, 2005 @@ -624,13 +643,13 @@ done: return ret_value; } - + /*------------------------------------------------------------------------- * Function: test_copy_attach_paired_attributes * * Purpose: Attach NUM_ATTRIBUTES attributes to a pair of objects to be copied * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * * Programmer: Quincey Koziol * Tuesday, November 1, 2005 @@ -693,7 +712,7 @@ done: return -1; } /* end test_copy_attach_paired_attributes() */ - + /*------------------------------------------------------------------------- * Function: compare_attribute * @@ -824,18 +843,18 @@ error: return FALSE; } /* end compare_attribute() */ - + /*------------------------------------------------------------------------- * Function: compare_std_attributes * * Purpose: Compare "standard" attributes on two objects to check that they are equal * - * Return: TRUE if objects have same attributes/FALSE if they are different + * Return: TRUE if objects have same attributes/FALSE if they are different * * Programmer: Quincey Koziol * Monday, October 31, 2005 * - * Note: This isn't very general, the attributes are assumed to be + * Note: This isn't very general, the attributes are assumed to be * those written in test_copy_attach_attributes(). * * Modifier: Peter Cao @@ -896,19 +915,19 @@ compare_std_attributes(hid_t oid, hid_t oid2, hid_t pid) error: H5E_BEGIN_TRY { - H5Aclose(aid2); - H5Aclose(aid); + H5Aclose(aid2); + H5Aclose(aid); } H5E_END_TRY; return FALSE; } /* end compare_std_attributes() */ - + /*------------------------------------------------------------------------- * Function: compare_data * * Purpose: Compare two buffers of data to check that they are equal * - * Return: TRUE if buffer are equal/FALSE if they are different + * Return: TRUE if buffer are equal/FALSE if they are different * * Programmer: Quincey Koziol * Monday, November 21, 2005 @@ -1169,13 +1188,13 @@ error: return FALSE; } /* end compare_data() */ - + /*------------------------------------------------------------------------- * Function: compare_datasets * * Purpose: Compare two datasets to check that they are equal * - * Return: TRUE if datasets are equal/FALSE if they are different + * Return: TRUE if datasets are equal/FALSE if they are different * * Programmer: Quincey Koziol * Tuesday, October 25, 2005 @@ -1332,23 +1351,23 @@ error: HDfree(rbuf); if(rbuf2) HDfree(rbuf2); - H5Pclose(dcpl2); - H5Pclose(dcpl); - H5Sclose(sid2); - H5Sclose(sid); - H5Tclose(tid2); - H5Tclose(tid); + H5Pclose(dcpl2); + H5Pclose(dcpl); + H5Sclose(sid2); + H5Sclose(sid); + H5Tclose(tid2); + H5Tclose(tid); } H5E_END_TRY; return FALSE; } /* end compare_datasets() */ - + /*------------------------------------------------------------------------- * Function: compare_groups * * Purpose: Compare two groups to check that they are "equal" * - * Return: TRUE if group are equal/FALSE if they are different + * Return: TRUE if group are equal/FALSE if they are different * * Programmer: Quincey Koziol * Monday, October 31, 2005 @@ -1498,48 +1517,48 @@ error: return FALSE; } /* end compare_groups() */ - + /*------------------------------------------------------------------------- * Function: compare_idx_type * * Purpose: If using new format, the index array type should be NEW_TYPE - * If not, the index array type should be OLD_TYPE + * If not, the index array type should be OLD_TYPE * - * Return: TRUE if the index type retrieved for the dataset DID is - * as expected - * FALSE if not + * Return: TRUE if the index type retrieved for the dataset DID is + * as expected + * FALSE if not * * Programmer: Vailin Choi; August 2009 * *------------------------------------------------------------------------- */ -static int +static int compare_idx_type(hid_t fapl, hid_t did, H5D_chunk_index_t new_type, H5D_chunk_index_t old_type) { H5D_chunk_index_t idx_type; /* Dataset chunk index type */ H5F_libver_t low; /* File format low bound */ /* Get the chunk index type */ - if(H5D__layout_idx_type_test(did, &idx_type) < 0) - FAIL_STACK_ERROR + if(H5D__layout_idx_type_test(did, &idx_type) < 0) + FAIL_STACK_ERROR /* Check if we are using the latest version of the format */ - if(H5Pget_libver_bounds(fapl, &low, NULL) < 0) - FAIL_STACK_ERROR + if(H5Pget_libver_bounds(fapl, &low, NULL) < 0) + FAIL_STACK_ERROR /* Verify index type */ if(low == H5F_LIBVER_LATEST) { - if(idx_type != new_type) - TEST_ERROR - } else if(idx_type != old_type) - TEST_ERROR + if(idx_type != new_type) + TEST_ERROR + } else if(idx_type != old_type) + TEST_ERROR return TRUE; error: return FALSE; } /* compare_idx_type() */ - + /*------------------------------------------------------------------------- * Function: test_copy_named_datatype * @@ -1560,8 +1579,8 @@ test_copy_named_datatype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d { hid_t fid_src = -1, fid_dst = -1; /* File IDs */ hid_t tid = -1, tid2 = -1; /* Datatype IDs */ - char src_filename[NAME_BUF_SIZE]; - char dst_filename[NAME_BUF_SIZE]; + char src_filename[NAME_BUF_SIZE]; + char dst_filename[NAME_BUF_SIZE]; TESTING("H5Ocopy(): named datatype"); @@ -1626,15 +1645,15 @@ test_copy_named_datatype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d error: H5E_BEGIN_TRY { - H5Tclose(tid2); - H5Tclose(tid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid2); + H5Tclose(tid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_named_datatype */ - + /*------------------------------------------------------------------------- * Function: test_copy_named_datatype_vl * @@ -1653,8 +1672,8 @@ test_copy_named_datatype_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ { hid_t fid_src = -1, fid_dst = -1; /* File IDs */ hid_t tid = -1, tid2 = -1; /* Datatype IDs */ - char src_filename[NAME_BUF_SIZE]; - char dst_filename[NAME_BUF_SIZE]; + char src_filename[NAME_BUF_SIZE]; + char dst_filename[NAME_BUF_SIZE]; TESTING("H5Ocopy(): named vlen datatype"); @@ -1719,15 +1738,15 @@ test_copy_named_datatype_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ error: H5E_BEGIN_TRY { - H5Tclose(tid2); - H5Tclose(tid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid2); + H5Tclose(tid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_named_datatype_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_named_datatype_vl_vl * @@ -1746,8 +1765,8 @@ test_copy_named_datatype_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h { hid_t fid_src = -1, fid_dst = -1; /* File IDs */ hid_t tid = -1, tid2 = -1; /* Datatype IDs */ - char src_filename[NAME_BUF_SIZE]; - char dst_filename[NAME_BUF_SIZE]; + char src_filename[NAME_BUF_SIZE]; + char dst_filename[NAME_BUF_SIZE]; TESTING("H5Ocopy(): named nested vlen datatype"); @@ -1818,15 +1837,15 @@ test_copy_named_datatype_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h error: H5E_BEGIN_TRY { - H5Tclose(tid2); - H5Tclose(tid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid2); + H5Tclose(tid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_named_datatype_vl_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_named_datatype_attr_self * @@ -1969,7 +1988,7 @@ error: return 1; } /* end test_copy_named_datatype_attr_self */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_simple * @@ -2078,16 +2097,194 @@ test_copy_dataset_simple(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_simple */ - + +/*------------------------------------------------------------------------- + * Function: test_copy_dataset_versionbounds + * + * Purpose: Verify copying dataset works as expected in various version + * bound combination. + * + * Description: + * Create a simple dataset in SRC file using default versions. + * For each valid version bound combination, create a DST file, + * and attempt to copy the SRC dataset to the DST file. + * When copying fails, verify that the failure is a result of + * the invalid bounds, that is, DST has lower bounds than SRC. + * + * Return: Success: 0 + * Failure: 1 + * + *------------------------------------------------------------------------- + */ +static int +test_copy_dataset_versionbounds(hid_t fcpl_src, hid_t fapl_src) +{ + hid_t fid_src = -1, fid_dst = -1; /* Source and destination file IDs */ + hid_t fapl_dst = -1; /* File access plist for dest file */ + hid_t sid = -1; /* Dataspace ID */ + hid_t did_src = -1, did_dst = -1; /* Source and destination dataset IDs */ + int buf[DIM_SIZE_1][DIM_SIZE_2]; /* Buffer for writing data */ + hsize_t dim2d[2]; /* Dataset dimensions */ + char src_fname[NAME_BUF_SIZE]; /* Name of source file */ + char dst_fname[NAME_BUF_SIZE]; /* Name of destination file */ + H5F_libver_t low, high; /* File format bounds */ + H5F_libver_t low_src, high_src; /* Source file format bounds */ + unsigned srcdset_fillversion; /* Fill version of source dataset */ + hbool_t valid_high = FALSE; /* TRUE if high bound is valid */ + int i, j; /* Local index variables */ + H5D_t *dsetp = NULL; /* Pointer to internal dset structure */ + herr_t ret; /* Generic return value */ + + TESTING("H5Ocopy(): simple dataset with version bounds"); + + /* Initialize write buffer */ + for (i=0; i<DIM_SIZE_1; i++) + for (j=0; j<DIM_SIZE_2; j++) + buf[i][j] = 10000 + 100*i+j; + + /* Create a file access property list for destination file */ + if ((fapl_dst = H5Pcreate(H5P_FILE_ACCESS)) < 0) TEST_ERROR + + /* Initialize the filenames */ + h5_fixname(FILENAME[4], fapl_src, src_fname, sizeof src_fname); + h5_fixname(FILENAME[5], fapl_dst, dst_fname, sizeof dst_fname); + + /* Reset file address checking info */ + addr_reset(); + + /* Create source file */ + fid_src = H5Fcreate(src_fname, H5F_ACC_TRUNC, fcpl_src, fapl_src); + if (fid_src < 0) TEST_ERROR + + /* Set dataspace dimensions */ + dim2d[0] = DIM_SIZE_1; + dim2d[1] = DIM_SIZE_2; + + /* Create 2D dataspace */ + if((sid = H5Screate_simple(2, dim2d, NULL)) < 0) TEST_ERROR + + /* Create 2D int dataset in SRC file */ + did_src = H5Dcreate2(fid_src, NAME_DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (did_src < 0) TEST_ERROR + + /* Write data into SRC file */ + ret = H5Dwrite(did_src, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); + if (ret < 0) TEST_ERROR + + /* Get the internal dset ptr to get the fill version for verifying later */ + if ((dsetp = (H5D_t *)H5I_object(did_src)) == NULL) TEST_ERROR + srcdset_fillversion = dsetp->shared->dcpl_cache.fill.version; + + /* Close dataspace */ + if(H5Sclose(sid) < 0) TEST_ERROR + + /* Close the dataset */ + if(H5Dclose(did_src) < 0) TEST_ERROR + + /* Close the SRC file */ + if(H5Fclose(fid_src) < 0) TEST_ERROR + + /* Open the source file with read-only */ + fid_src = H5Fopen(src_fname, H5F_ACC_RDONLY, fapl_src); + if (fid_src < 0) TEST_ERROR + + /* Loop through all the combinations of low/high library format bounds, + skipping invalid combinations. Create a destination file and copy the + source dataset to it, then verify */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + /* Set version bounds */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl_dst, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Create destination file */ + fid_dst = H5Fcreate(dst_fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_dst); + if (fid_dst < 0) TEST_ERROR + + /* Create an uncopied object in destination file so that addresses + in source and destination files aren't the same */ + if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR + + /* Try to copy the dataset */ + H5E_BEGIN_TRY { + ret = H5Ocopy(fid_src, NAME_DATASET_SIMPLE, fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT, H5P_DEFAULT); + } H5E_END_TRY; + + /* If copy failed, check if the failure is expected */ + if (ret < 0) + { + /* Failure is valid if fill version of source dataset is + greater than destination */ + if (srcdset_fillversion <= H5O_fill_ver_bounds[high]) + TEST_ERROR + + /* Close the DST file before continue */ + if(H5Fclose(fid_dst) < 0) TEST_ERROR + continue; + } + + /* Close the DST file */ + if(H5Fclose(fid_dst) < 0) TEST_ERROR + + /* Open destination file */ + fid_dst = H5Fopen(dst_fname, H5F_ACC_RDWR, fapl_dst); + if (fid_dst < 0) TEST_ERROR + + /* Open the datasets to compare */ + did_src = H5Dopen2(fid_src, NAME_DATASET_SIMPLE, H5P_DEFAULT); + if (did_src < 0) TEST_ERROR + did_dst = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT); + if (did_dst < 0) TEST_ERROR + + /* Check if the datasets are equal */ + if (compare_datasets(did_src, did_dst, H5P_DEFAULT, buf) != TRUE) + TEST_ERROR + + /* Close the datasets */ + if(H5Dclose(did_dst) < 0) TEST_ERROR + if(H5Dclose(did_src) < 0) TEST_ERROR + + /* Close the DST file */ + if(H5Fclose(fid_dst) < 0) TEST_ERROR + + } /* for high */ + } /* for low */ + + /* Close property list and source file */ + if (H5Pclose(fapl_dst) < 0) TEST_ERROR + if (H5Fclose(fid_src) < 0) TEST_ERROR + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(did_dst); + H5Dclose(did_src); + H5Sclose(sid); + H5Pclose(fapl_dst); + H5Fclose(fid_dst); + H5Fclose(fid_src); + } H5E_END_TRY; + + return 1; +} /* end test_copy_dataset_versionbounds */ + + /*------------------------------------------------------------------------- * Function: test_copy_dataset_simple_samefile * @@ -2185,22 +2382,22 @@ test_copy_dataset_simple_samefile(hid_t fcpl, hid_t fapl) error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Fclose(fid); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Fclose(fid); } H5E_END_TRY; return 1; } /* end test_copy_dataset_simple_samefile */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_simple_empty * * Purpose: Create a simple dataset in SRC file and copy it to DST file * (Note: dataset has no data) * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -2303,16 +2500,16 @@ test_copy_dataset_simple_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_simple_empty */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compound * @@ -2434,17 +2631,17 @@ test_copy_dataset_compound(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compound */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked * @@ -2526,10 +2723,10 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * Create 1-D dataset: chunked, non-filterd, with data - * dims=max dims=chunk dims - * H5D_ALLOC_TIME_INC (default) + * dims=max dims=chunk dims + * H5D_ALLOC_TIME_INC (default) */ /* create 1-D dataspace */ if((sid = H5Screate_simple(1, dim1d, dim1d)) < 0) TEST_ERROR @@ -2601,9 +2798,9 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * Create 2-D dataset: chunked, non-filterd, with data, dims=chunk dims, - * H5D_ALLOC_TIME_INC (default) + * H5D_ALLOC_TIME_INC (default) */ /* create 2-D dataspace */ @@ -2625,9 +2822,9 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * Create 2-D dataset: chunked, non-filterd, with data, dims=chunk dims, - * H5D_ALLOC_TIME_EARLY + * H5D_ALLOC_TIME_EARLY */ if(H5Pset_alloc_time(pid, H5D_ALLOC_TIME_EARLY) < 0) TEST_ERROR @@ -2649,9 +2846,9 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* close chunk plist */ if(H5Pclose(pid) < 0) TEST_ERROR - /* + /* * Create 2-D dataset: chunked, non-filterd, with data, dims=max dims=chunk dims, - * H5D_ALLOC_TIME_LATE + * H5D_ALLOC_TIME_LATE */ /* create 2-D dataspace */ if((sid = H5Screate_simple(2, dim2d, dim2d)) < 0) TEST_ERROR @@ -2710,7 +2907,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_EARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf1d) != TRUE) TEST_ERROR @@ -2730,7 +2927,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf1d) != TRUE) TEST_ERROR @@ -2749,7 +2946,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_FARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf2d) != TRUE) TEST_ERROR @@ -2769,7 +2966,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_NONE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf2d) != TRUE) TEST_ERROR @@ -2788,7 +2985,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf2d) != TRUE) TEST_ERROR @@ -2807,7 +3004,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf2d) != TRUE) TEST_ERROR @@ -2826,7 +3023,7 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, buf2d) != TRUE) TEST_ERROR @@ -2848,17 +3045,17 @@ test_copy_dataset_chunked(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_empty * @@ -2926,9 +3123,9 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 1-D dataset: chunked, empty, non-filtered, - * dims=max dims=chunk dims, H5D_ALLOC_TIME_INC(default) + * dims=max dims=chunk dims, H5D_ALLOC_TIME_INC(default) */ /* Set 1-D dataspace dimensions */ @@ -2996,9 +3193,9 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 2-D dataset: chunked, empty, non-filtered, - * dims=chunk dims, H5D_ALLOC_TIME_INC (default) + * dims=chunk dims, H5D_ALLOC_TIME_INC (default) */ /* Set 2-D dataspace dimensions */ @@ -3021,9 +3218,9 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 2-D dataset: chunked, empty, non-filtered, dims=chunk dims - * H5D_ALLOC_TIME_EARLY + * H5D_ALLOC_TIME_EARLY */ /* Set allocation time to early */ if(H5Pset_alloc_time(pid, H5D_ALLOC_TIME_EARLY) < 0) TEST_ERROR @@ -3043,9 +3240,9 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* - * create 2-D dataset: chunked, empty, non-filtered, - * dims=max dims=chunk dims, H5D_ALLOC_TIME_LATE + /* + * create 2-D dataset: chunked, empty, non-filtered, + * dims=max dims=chunk dims, H5D_ALLOC_TIME_LATE */ /* Set 2-D dataspace dimensions */ @@ -3107,7 +3304,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_EARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3126,7 +3323,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3145,7 +3342,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_FARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3164,7 +3361,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3184,7 +3381,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_NONE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3204,7 +3401,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3223,7 +3420,7 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3245,17 +3442,17 @@ test_copy_dataset_chunked_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_empty */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_sparse * @@ -3479,7 +3676,7 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_EARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3499,7 +3696,7 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_BT2, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3519,7 +3716,7 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_NONE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3539,7 +3736,7 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Check if the array index type is correct */ if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_NONE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3562,17 +3759,17 @@ test_copy_dataset_chunked_sparse(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_sparse */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compressed * @@ -3669,9 +3866,9 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 2-D dataset: chunked, filtered, with data - * dims=max dims=chunk dims, H5D_ALLOC_TIME_INC(default) + * dims=max dims=chunk dims, H5D_ALLOC_TIME_INC(default) */ /* create dataspace */ if((sid = H5Screate_simple(2, dim2d, dim2d)) < 0) TEST_ERROR @@ -3693,9 +3890,9 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 2-D dataset: chunked, filtered, with data - * dims=chunk dims, H5D_ALLOC_TIME_EARLY + * dims=chunk dims, H5D_ALLOC_TIME_EARLY */ /* create dataspace */ if((sid = H5Screate_simple(2, dim2d, NULL)) < 0) TEST_ERROR @@ -3721,9 +3918,9 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid /* close the dataset */ if(H5Dclose(did) < 0) TEST_ERROR - /* + /* * create 2-D dataset: chunked, filtered, with data - * dims=chunk dims, H5D_ALLOC_TIME_LATE + * dims=chunk dims, H5D_ALLOC_TIME_LATE */ /* create dataspace */ if((sid = H5Screate_simple(2, dim2d, NULL)) < 0) TEST_ERROR @@ -3788,7 +3985,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid if((did2 = H5Dopen2(fid_dst, NAME_DATASET_CHUNKED, H5P_DEFAULT)) < 0) TEST_ERROR if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_FARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3807,7 +4004,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid if((did2 = H5Dopen2(fid_dst, NAME_DATASET_CHUNKED2, H5P_DEFAULT)) < 0) TEST_ERROR if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_FARRAY, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3825,7 +4022,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid if((did2 = H5Dopen2(fid_dst, NAME_DATASET_CHUNKED2_SINGLE, H5P_DEFAULT)) < 0) TEST_ERROR if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3843,7 +4040,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid if((did2 = H5Dopen2(fid_dst, NAME_DATASET_CHUNKED3_SINGLE, H5P_DEFAULT)) < 0) TEST_ERROR if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3861,7 +4058,7 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid if((did2 = H5Dopen2(fid_dst, NAME_DATASET_CHUNKED4_SINGLE, H5P_DEFAULT)) < 0) TEST_ERROR if(compare_idx_type(src_fapl, did2, H5D_CHUNK_IDX_SINGLE, H5D_CHUNK_IDX_BTREE) != TRUE) - TEST_ERROR + TEST_ERROR /* Check if the datasets are equal */ if(compare_datasets(did, did2, H5P_DEFAULT, NULL) != TRUE) TEST_ERROR @@ -3885,24 +4082,24 @@ test_copy_dataset_compressed(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid #ifdef H5_HAVE_FILTER_DEFLATE error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; #endif /* H5_HAVE_FILTER_DEFLATE */ } /* end test_copy_dataset_compressed */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_no_edge_filt * * Purpose: Create a compressed, chunked dataset in SRC file and copy it to DST file * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -4053,13 +4250,13 @@ error: #endif /* H5_HAVE_FILTER_DEFLATE */ } /* end test_copy_dataset_no_edge_filt */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compact * * Purpose: Create a compact dataset in SRC file and copy it to DST file * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -4179,17 +4376,17 @@ test_copy_dataset_compact(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compact */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_external * @@ -4306,17 +4503,17 @@ test_copy_dataset_external(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_external */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_named_dtype * @@ -4427,17 +4624,17 @@ test_copy_dataset_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hi error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_named_dtype */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_named_dtype_hier * @@ -4564,18 +4761,18 @@ test_copy_dataset_named_dtype_hier(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap error: H5E_BEGIN_TRY { - H5Dclose(did); - H5Tclose(tid); - H5Sclose(sid); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_named_dtype_hier */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_named_dtype_hier_outside * @@ -4703,18 +4900,18 @@ test_copy_dataset_named_dtype_hier_outside(hid_t fcpl_src, hid_t fcpl_dst, hid_t error: H5E_BEGIN_TRY { - H5Dclose(did); - H5Tclose(tid); - H5Sclose(sid); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_named_dtype_hier_outside */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_multi_ohdr_chunks * @@ -4825,7 +5022,7 @@ test_copy_dataset_multi_ohdr_chunks(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fa /* close the second dataset */ if(H5Dclose(did2) < 0) TEST_ERROR - } else + } else /* open the group for copy */ if((gid = H5Gopen2(fid_src, NAME_GROUP_TOP, H5P_DEFAULT)) < 0) FAIL_STACK_ERROR @@ -4852,18 +5049,18 @@ test_copy_dataset_multi_ohdr_chunks(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fa error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_multi_ohdr_chunks */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_attr_named_dtype * @@ -4993,19 +5190,19 @@ test_copy_dataset_attr_named_dtype(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Tclose(tid); - H5Sclose(sid); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_attr_named_dtype */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_contig_vl * @@ -5129,19 +5326,19 @@ test_copy_dataset_contig_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_ error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_contig_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_vl * @@ -5312,20 +5509,20 @@ test_copy_dataset_chunked_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Pclose(pid); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Pclose(pid); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compact_vl * @@ -5457,19 +5654,19 @@ test_copy_dataset_compact_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compact_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_attribute_vl * @@ -5575,11 +5772,11 @@ error: H5E_BEGIN_TRY { H5Aclose(aid2); H5Aclose(aid); - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_simple_empty */ @@ -5598,18 +5795,18 @@ error: static int attach_attribute_compound_vlstr(hid_t loc_id) { - hid_t aid = -1; /* Attribute ID */ - hid_t sid = -1; /* Dataspace ID */ - hid_t tid = -1; /* Datatype ID */ - hid_t vl_str_tid = -1; /* Variable length string datatype ID */ - hid_t cmpd_tid = -1; /* Compound datatype ID */ - hsize_t dim1 = 1; /* Dimension size */ - typedef struct { /* Compound structure for the attribute */ + hid_t aid = -1; /* Attribute ID */ + hid_t sid = -1; /* Dataspace ID */ + hid_t tid = -1; /* Datatype ID */ + hid_t vl_str_tid = -1; /* Variable length string datatype ID */ + hid_t cmpd_tid = -1; /* Compound datatype ID */ + hsize_t dim1 = 1; /* Dimension size */ + typedef struct { /* Compound structure for the attribute */ int i; char *v; } s1; s1 buf; /* Buffer */ - int ret_value = -1; /* Return value */ + int ret_value = -1; /* Return value */ /* Create dataspace */ if((sid = H5Screate_simple(1, &dim1, NULL)) < 0 ) @@ -5663,7 +5860,7 @@ done: * Function: compare_attribute_compound_vlstr * * Purpose: Compare data of the attributes attached to the two objects. - * The attribute is a compound datatype with a variable length string. + * The attribute is a compound datatype with a variable length string. * * Return: Non-negative on success/Negative on failure * @@ -5674,46 +5871,46 @@ done: static int compare_attribute_compound_vlstr(hid_t loc, hid_t loc2) { - hid_t aid = -1, aid2 = -1; /* Attribute IDs */ - hid_t tid = -1, tid2 = -1; /* Datatype IDs */ - typedef struct { /* Compound structure for the attribute */ - int i; - char *v; + hid_t aid = -1, aid2 = -1; /* Attribute IDs */ + hid_t tid = -1, tid2 = -1; /* Datatype IDs */ + typedef struct { /* Compound structure for the attribute */ + int i; + char *v; } s1; - s1 rbuf; /* Buffer for data read */ - s1 rbuf2; /* Buffer for data read */ - + s1 rbuf; /* Buffer for data read */ + s1 rbuf2; /* Buffer for data read */ + /* Open the attributes attached to the objects */ if((aid = H5Aopen_by_idx(loc, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR if((aid2 = H5Aopen_by_idx(loc2, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)0, H5P_DEFAULT, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Get the attributes' datatypes */ - if((tid = H5Aget_type(aid)) < 0) - FAIL_STACK_ERROR + if((tid = H5Aget_type(aid)) < 0) + FAIL_STACK_ERROR if((tid2 = H5Aget_type(aid2)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Read the attributes */ if(H5Aread(aid, tid, &rbuf) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR if(H5Aread(aid2, tid2, &rbuf2) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Compare the attributes' data */ if(rbuf.i != rbuf2.i) - FAIL_STACK_ERROR - if(HDstrlen(rbuf.v) != HDstrlen(rbuf2.v)) - FAIL_STACK_ERROR - if(HDmemcmp(rbuf.v, rbuf2.v, HDstrlen(rbuf.v))) - FAIL_STACK_ERROR + FAIL_STACK_ERROR + if(HDstrlen(rbuf.v) != HDstrlen(rbuf2.v)) + FAIL_STACK_ERROR + if(HDmemcmp(rbuf.v, rbuf2.v, HDstrlen(rbuf.v))) + FAIL_STACK_ERROR /* Close the attributes */ if(H5Aclose(aid) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR if(H5Aclose(aid2) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR return TRUE; error: @@ -5731,15 +5928,15 @@ error: * Function: test_copy_attribute_compound_vlstr * * Purpose: Create a simple dataset and a group in SRC file. - * Both has an attribute with a compound datatype consisting + * Both has an attribute with a compound datatype consisting * of a variable length string * Copy the dataset and the group to DST file - * This is for HDFFV-7991 + * This is for HDFFV-7991 * * Return: Success: 0 * Failure: number of errors * - * Programmer: + * Programmer: * *------------------------------------------------------------------------- */ @@ -5750,10 +5947,10 @@ test_copy_attribute_compound_vlstr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap hid_t sid = -1; /* Dataspace ID */ hid_t did = -1, did2 = -1; /* Dataset IDs */ hid_t aid = -1, aid2 = -1; /* Attribute IDs */ - hid_t gid = -1, gid2 = -1; /* Group IDs */ + hid_t gid = -1, gid2 = -1; /* Group IDs */ hsize_t dim2d[2]; /* Dataset dimensions */ - char src_filename[NAME_BUF_SIZE]; /* Source file name */ - char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ + char src_filename[NAME_BUF_SIZE]; /* Source file name */ + char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ TESTING("H5Ocopy(): attribute with compound datatype consisting of variable length string"); @@ -5766,7 +5963,7 @@ test_copy_attribute_compound_vlstr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* set dataspace dimensions */ dim2d[0] = DIM_SIZE_1; @@ -5774,103 +5971,103 @@ test_copy_attribute_compound_vlstr(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* create 2D dataspace */ if((sid = H5Screate_simple(2, dim2d, NULL)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* create 2D int dataset at SRC file */ if((did = H5Dcreate2(fid_src, NAME_DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close dataspace */ if(H5Sclose(sid) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* attach an attribute to the dataset */ if(attach_attribute_compound_vlstr(did) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the dataset */ if(H5Dclose(did) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* create a group */ if((gid = H5Gcreate2(fid_src, NAME_GROUP_EMPTY, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* attach attribute to the group */ if(attach_attribute_compound_vlstr(gid) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the group */ if(H5Gclose(gid) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the SRC file */ if(H5Fclose(fid_src) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* open the source file with read-only */ if((fid_src = H5Fopen(src_filename, H5F_ACC_RDONLY, src_fapl)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Create an uncopied object in destination file so that addresses in source and destination files aren't the same */ if(H5Gclose(H5Gcreate2(fid_dst, NAME_GROUP_UNCOPIED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* copy the dataset from SRC to DST */ if(H5Ocopy(fid_src, NAME_DATASET_SIMPLE, fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT, H5P_DEFAULT) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* open the src dataset */ if((did = H5Dopen2(fid_src, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* open the destination dataset */ if((did2 = H5Dopen2(fid_dst, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* compare the data of the attributes attached to the two datasets */ if(compare_attribute_compound_vlstr(did, did2) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the datasets */ if(H5Dclose(did2) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR if(H5Dclose(did) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Copy the group */ if(H5Ocopy(fid_src, NAME_GROUP_EMPTY, fid_dst, NAME_GROUP_EMPTY, H5P_DEFAULT, H5P_DEFAULT) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Open the src group */ if((gid = H5Gopen2(fid_src, NAME_GROUP_EMPTY, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* Open the destination group */ if((gid2 = H5Gopen2(fid_dst, NAME_GROUP_EMPTY, H5P_DEFAULT)) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* compare the data of the attributes attached to the two groups */ if(compare_attribute_compound_vlstr(gid, gid2) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the groups */ - if(H5Gclose(gid) < 0) - FAIL_STACK_ERROR - if(H5Gclose(gid2) < 0) - FAIL_STACK_ERROR + if(H5Gclose(gid) < 0) + FAIL_STACK_ERROR + if(H5Gclose(gid2) < 0) + FAIL_STACK_ERROR /* close the SRC file */ if(H5Fclose(fid_src) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR /* close the DST file */ if(H5Fclose(fid_dst) < 0) - FAIL_STACK_ERROR + FAIL_STACK_ERROR PASSED(); return 0; @@ -5879,18 +6076,18 @@ error: H5E_BEGIN_TRY { H5Aclose(aid2); H5Aclose(aid); - H5Dclose(did2); - H5Dclose(did); - H5Gclose(gid); - H5Gclose(gid2); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Gclose(gid); + H5Gclose(gid2); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_attribute_compound_vlstr() */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compressed_vl * @@ -6034,21 +6231,21 @@ test_copy_dataset_compressed_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, #ifdef H5_HAVE_FILTER_DEFLATE error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); + H5Pclose(pid); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; #endif /* H5_HAVE_FILTER_DEFLATE */ } /* end test_copy_dataset_compressed_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_group_empty * @@ -6135,15 +6332,15 @@ test_copy_group_empty(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ error: H5E_BEGIN_TRY { - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_group_empty */ - + /*------------------------------------------------------------------------- * Function: test_copy_root_group * @@ -6276,7 +6473,7 @@ error: return 1; } /* end test_copy_root_group */ - + /*------------------------------------------------------------------------- * Function: test_copy_group * @@ -6399,18 +6596,18 @@ test_copy_group(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) error: H5E_BEGIN_TRY { - H5Sclose(sid); - H5Dclose(did); - H5Gclose(gid_sub); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Sclose(sid); + H5Dclose(did); + H5Gclose(gid_sub); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_group */ - + /*------------------------------------------------------------------------- * Function: test_copy_group_deep * @@ -6541,18 +6738,18 @@ test_copy_group_deep(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f error: H5E_BEGIN_TRY { - H5Sclose(sid); - H5Dclose(did); - H5Gclose(gid_sub); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Sclose(sid); + H5Dclose(did); + H5Gclose(gid_sub); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_group_deep */ - + /*------------------------------------------------------------------------- * Function: test_copy_group_loop * @@ -6652,17 +6849,17 @@ test_copy_group_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_f error: H5E_BEGIN_TRY { - H5Gclose(gid_sub2); - H5Gclose(gid_sub); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Gclose(gid_sub2); + H5Gclose(gid_sub); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_group_loop */ - + /*------------------------------------------------------------------------- * Function: test_copy_group_wide_loop * @@ -6781,17 +6978,17 @@ test_copy_group_wide_loop(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t error: H5E_BEGIN_TRY { - H5Gclose(gid_sub2); - H5Gclose(gid_sub); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Gclose(gid_sub2); + H5Gclose(gid_sub); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_group_wide_loop */ - + /*------------------------------------------------------------------------- * Function: test_copy_group_links * @@ -7039,20 +7236,20 @@ test_copy_group_links(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_ error: H5E_BEGIN_TRY { - H5Sclose(sid); - H5Dclose(did2); - H5Dclose(did); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_ext); - H5Fclose(fid_dst); - H5Fclose(fid_src); - H5Pclose(plid); + H5Sclose(sid); + H5Dclose(did2); + H5Dclose(did); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_ext); + H5Fclose(fid_dst); + H5Fclose(fid_src); + H5Pclose(plid); } H5E_END_TRY; return 1; } /* end test_copy_group_links */ - + /*------------------------------------------------------------------------- * Function: test_copy_soft_link * @@ -7178,17 +7375,17 @@ test_copy_soft_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fa error: H5E_BEGIN_TRY { - H5Sclose(sid); - H5Dclose(did2); - H5Dclose(did); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Sclose(sid); + H5Dclose(did2); + H5Dclose(did); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_soft_link */ - + /*------------------------------------------------------------------------- * Function: test_copy_ext_link * @@ -7312,17 +7509,17 @@ test_copy_ext_link(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fap error: H5E_BEGIN_TRY { - H5Sclose(sid); - H5Dclose(did2); - H5Dclose(did); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Sclose(sid); + H5Dclose(did2); + H5Dclose(did); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_ext_link */ - + /*------------------------------------------------------------------------- * Function: test_copy_exist * @@ -7422,15 +7619,15 @@ test_copy_exist(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) error: H5E_BEGIN_TRY { - H5Dclose(did); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_exist */ - + /*------------------------------------------------------------------------- * Function: test_copy_path * @@ -7556,17 +7753,17 @@ test_copy_path(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Sclose(sid); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Sclose(sid); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_path */ - + /*------------------------------------------------------------------------- * Function: test_copy_same_file_named_datatype * @@ -7628,21 +7825,21 @@ test_copy_same_file_named_datatype(hid_t fcpl_src, hid_t fapl) error: H5E_BEGIN_TRY { - H5Tclose(tid2); - H5Tclose(tid); - H5Fclose(fid); + H5Tclose(tid2); + H5Tclose(tid); + H5Fclose(fid); } H5E_END_TRY; return 1; } /* end test_copy_same_file_named_datatype */ - + /*------------------------------------------------------------------------- * Function: test_copy_old_layout * * Purpose: Copy dataset that uses the "old" layout version (pre version 3) * format. * - * Note: This test uses the "fill_old.h5" file for convenience, since it + * Note: This test uses the "fill_old.h5" file for convenience, since it * has a dataset with the old layout format. * * Return: Success: 0 @@ -7718,15 +7915,15 @@ test_copy_old_layout(hid_t fcpl_dst, hid_t fapl, hbool_t test_open) error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did2); + H5Dclose(did); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_old_layout */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compact_named_vl * @@ -7867,21 +8064,21 @@ test_copy_dataset_compact_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap error: H5E_BEGIN_TRY { - H5Pclose(pid); - H5Dclose(did2); - H5Dclose(did); + H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid_copy, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid_copy); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid_copy); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compact_named_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_contig_named_vl * @@ -8014,27 +8211,27 @@ test_copy_dataset_contig_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid_copy, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid_copy); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid_copy); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_contig_named_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_named_vl * * Purpose: Create a dataset that uses a named variable length datatype * in SRC file and copy it to DST file * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -8181,21 +8378,21 @@ test_copy_dataset_chunked_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap error: H5E_BEGIN_TRY { - H5Pclose(pid); - H5Dclose(did2); - H5Dclose(did); + H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid_copy, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid_copy); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid_copy); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_named_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compressed_named_vl * @@ -8338,21 +8535,21 @@ test_copy_dataset_compressed_named_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_ error: H5E_BEGIN_TRY { - H5Pclose(pid); - H5Dclose(did2); - H5Dclose(did); + H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid_copy, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid_copy); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid_copy); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compressed_named_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compact_vl_vl * @@ -8501,28 +8698,28 @@ test_copy_dataset_compact_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid2, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Pclose(pid); - H5Tclose(tid); - H5Tclose(tid2); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Pclose(pid); + H5Tclose(tid); + H5Tclose(tid2); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compact_vl_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_contig_vl_vl * * Purpose: Create a compact dataset w/nested VLEN datatype * in SRC file and copy it to DST file * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -8674,21 +8871,21 @@ test_copy_dataset_contig_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, h error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid2, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Pclose(pid); - H5Tclose(tid); - H5Tclose(tid2); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Pclose(pid); + H5Tclose(tid); + H5Tclose(tid2); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_contig_vl_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_vl_vl * @@ -8707,7 +8904,7 @@ static int test_copy_dataset_chunked_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl) { hid_t fid_src = -1, fid_dst = -1; /* File IDs */ - hid_t tid = -1, tid2=-1; /* Datatype ID */ + hid_t tid = -1, tid2=-1; /* Datatype ID */ hid_t sid = -1; /* Dataspace ID */ hid_t pid = -1; /* Dataset creation property list ID */ hid_t did = -1, did2 = -1; /* Dataset IDs */ @@ -8875,28 +9072,28 @@ test_copy_dataset_chunked_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, error: H5E_BEGIN_TRY { - H5Pclose(pid); - H5Dclose(did2); - H5Dclose(did); + H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid2, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid2); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid2); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_vl_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compressed_vl_vl * * Purpose: Create a dataset that uses a named variable length datatype * in SRC file and copy it to DST file * - * Note: The parameter "test_open" is added to test for H5Ocopy when + * Note: The parameter "test_open" is added to test for H5Ocopy when * the dataset is open in the file (HDFFV-7853). * * Return: Success: 0 @@ -8998,7 +9195,7 @@ test_copy_dataset_compressed_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap /* open the source file with read-only */ if((fid_src = H5Fopen(src_filename, H5F_ACC_RDONLY, src_fapl)) < 0) TEST_ERROR } - + /* create destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR @@ -9051,16 +9248,16 @@ test_copy_dataset_compressed_vl_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fap error: H5E_BEGIN_TRY { - H5Pclose(pid); - H5Dclose(did2); - H5Dclose(did); + H5Pclose(pid); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid2, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Tclose(tid); - H5Tclose(tid2); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(dxpl_id); + H5Tclose(tid); + H5Tclose(tid2); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compressed_vl_vl */ @@ -9074,7 +9271,7 @@ typedef struct cmpd_vl_t { double c; } cmpd_vl_t; - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_contig_cmpd_vl * @@ -9207,20 +9404,20 @@ test_copy_dataset_contig_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); H5Pclose(dxpl_id); H5Tclose(tid2); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_contig_cmpd_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_chunked_cmpd_vl * @@ -9360,21 +9557,21 @@ test_copy_dataset_chunked_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); H5Pclose(dxpl_id); H5Pclose(pid); H5Tclose(tid2); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_chunked_cmpd_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_compact_cmpd_vl * @@ -9513,21 +9710,21 @@ test_copy_dataset_compact_cmpd_vl(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl error: H5E_BEGIN_TRY { - H5Dclose(did2); - H5Dclose(did); + H5Dclose(did2); + H5Dclose(did); H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf); - H5Pclose(dxpl_id); - H5Pclose(pid); + H5Pclose(dxpl_id); + H5Pclose(pid); H5Tclose(tid2); - H5Tclose(tid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_compact_cmpd_vl */ - + /*------------------------------------------------------------------------- * Function: test_copy_null_ref * @@ -9689,7 +9886,7 @@ error: return 1; } /* end test_copy_null_ref */ - + /*------------------------------------------------------------------------- * Function: test_copy_null_ref_open * @@ -9872,7 +10069,7 @@ error: return 1; } /* end test_copy_null_ref_open */ - + /*------------------------------------------------------------------------- * Function: test_copy_attr_crt_order * @@ -9994,7 +10191,7 @@ error: return 1; } /* end test_copy_attr_crt_order */ - + /*------------------------------------------------------------------------- * Function: test_copy_committed_datatype_merge * @@ -10231,7 +10428,7 @@ error: return 1; } /* end test_copy_committed_datatype_merge */ - + /*------------------------------------------------------------------------- * Function: test_copy_committed_datatype_merge_same_file * @@ -10503,7 +10700,7 @@ error: } /* end test_copy_committed_datatype_merge_same_file */ - + /*------------------------------------------------------------------------- * Function: test_copy_committed_dt_merge_sugg * @@ -10732,7 +10929,7 @@ error: return 1; } /* end test_copy_committed_dt_merge_sugg */ - + /*------------------------------------------------------------------------- * Function: test_copy_committed_dt_merge_attr * @@ -10925,27 +11122,27 @@ error: #define ROOT_NDT_INT "root_ndt_int" #define GROUP_NDT_SHORT "group_ndt_short" -#define SRC_GRP "src_grp" -#define DST_GRP "dst_grp" -#define DST_GRP2 "dst_grp2" +#define SRC_GRP "src_grp" +#define DST_GRP "dst_grp" +#define DST_GRP2 "dst_grp2" -#define SRC_NDT_SHORT "src_ndt_short" -#define SRC_NDT_INT "src_ndt_int" -#define SRC_NDT_INT2 "src_ndt_int2" -#define SRC_NDT_FLOAT "src_ndt_float" -#define SRC_NDT_DOUBLE "src_ndt_double" +#define SRC_NDT_SHORT "src_ndt_short" +#define SRC_NDT_INT "src_ndt_int" +#define SRC_NDT_INT2 "src_ndt_int2" +#define SRC_NDT_FLOAT "src_ndt_float" +#define SRC_NDT_DOUBLE "src_ndt_double" -#define DST_NDT_SHORT "dst_ndt_short" -#define DST_NDT_INT "dst_ndt_int" -#define DST_NDT_FLOAT "dst_ndt_float" -#define DST_NDT_DOUBLE "dst_ndt_double" +#define DST_NDT_SHORT "dst_ndt_short" +#define DST_NDT_INT "dst_ndt_int" +#define DST_NDT_FLOAT "dst_ndt_float" +#define DST_NDT_DOUBLE "dst_ndt_double" -#define SRC_NDT_DSET "src_ndt_dset" -#define SRC_NDT_DSET2 "src_ndt_dset2" -#define SRC_NDT_DSET3 "src_ndt_dset3" +#define SRC_NDT_DSET "src_ndt_dset" +#define SRC_NDT_DSET2 "src_ndt_dset2" +#define SRC_NDT_DSET3 "src_ndt_dset3" -#define SRC_DSET "src_dset" -#define SRC_DSET1 "src_dset1" +#define SRC_DSET "src_dset" +#define SRC_DSET1 "src_dset1" #define SRC_ATTR "src_attr" @@ -10954,21 +11151,21 @@ error: #define DST_ATTR "dst_attr" #define DST_ATTR2 "dst_attr2" - + /*------------------------------------------------------------------------- * Function: test_copy_cdt_hier_merge * * Purpose: Tests the "merge committed datatypes" feature of H5Ocopy: - * SRC file: - * Create committed datatypes at / and /g0 - * Create datasets with native type and committed datatypes at /g0 - * DST file: - * Create attributes with anonymous committed datatypes at /uncopied + * SRC file: + * Create committed datatypes at / and /g0 + * Create datasets with native type and committed datatypes at /g0 + * DST file: + * Create attributes with anonymous committed datatypes at /uncopied * - * Copy / at SRC to DST - * Copy /g0 at SRC to DST - * Copy the datasets in /g0 at SRC to DST /uncopied - * Verify that committed datatypes are copied and merged correctly + * Copy / at SRC to DST + * Copy /g0 at SRC to DST + * Copy the datasets in /g0 at SRC to DST /uncopied + * Verify that committed datatypes are copied and merged correctly * * Return: Success: 0 * Failure: number of errors @@ -10984,19 +11181,19 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d hid_t tid = -1; /* Datatype ID */ hid_t sid = -1; /* Dataspace ID */ hid_t did = -1; /* Dataset ID */ - hid_t gid = -1; /* Group IDs */ - hid_t f_tid = -1; /* Datatype ID for root group */ - hid_t g_tid = -1; /* Datatype ID for group */ - hid_t anon_tid = -1; /* Anonymous datatype */ - hid_t aid = -1; /* Attribute ID */ + hid_t gid = -1; /* Group IDs */ + hid_t f_tid = -1; /* Datatype ID for root group */ + hid_t g_tid = -1; /* Datatype ID for group */ + hid_t anon_tid = -1; /* Anonymous datatype */ + hid_t aid = -1; /* Attribute ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ - int i; /* Local index variable */ - hsize_t dim1d[1]; /* dimension sizes */ - int buf[DIM_SIZE_1]; /* Buffer for data */ - haddr_t exp_addr_int, exp_addr_short; /* Expected object addresses */ + int i; /* Local index variable */ + hsize_t dim1d[1]; /* dimension sizes */ + int buf[DIM_SIZE_1]; /* Buffer for data */ + haddr_t exp_addr_int, exp_addr_short; /* Expected object addresses */ H5O_info_t oinfo; /* Object info */ - char src_filename[NAME_BUF_SIZE]; /* Source file name */ - char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ + char src_filename[NAME_BUF_SIZE]; /* Source file name */ + char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ if(reopen) TESTING("H5Ocopy(): hier. of committed datatypes and merging with reopen") @@ -11014,8 +11211,8 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* Reset file address checking info */ addr_reset(); - /* - * Populate source file + /* + * Populate source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -11073,8 +11270,8 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* close the SRC file */ if(H5Fclose(fid_src) < 0) TEST_ERROR - /* - * Populate destination file + /* + * Populate destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR @@ -11087,7 +11284,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* create attribute of anon ndt (short) in /uncopied */ if((aid = H5Acreate2(gid, DST_ATTR_ANON_SHORT, anon_tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) - TEST_ERROR + TEST_ERROR /* close the attribute */ if(H5Aclose(aid) < 0) TEST_ERROR @@ -11101,7 +11298,7 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d /* create attribute of anon ndt (int) in /uncopied */ if((aid = H5Acreate2(gid, DST_ATTR_ANON_INT, anon_tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) - TEST_ERROR + TEST_ERROR /* close the attribute */ if(H5Aclose(aid) < 0) TEST_ERROR @@ -11262,17 +11459,17 @@ test_copy_cdt_hier_merge(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t d error: H5E_BEGIN_TRY { - H5Tclose(tid); - H5Tclose(f_tid); - H5Tclose(g_tid); - H5Tclose(anon_tid); - H5Pclose(ocpypl_id); - H5Aclose(aid); - H5Dclose(did); - H5Sclose(sid); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Tclose(tid); + H5Tclose(f_tid); + H5Tclose(g_tid); + H5Tclose(anon_tid); + H5Pclose(ocpypl_id); + H5Aclose(aid); + H5Dclose(did); + H5Sclose(sid); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_cdt_hier_merge */ @@ -11282,22 +11479,22 @@ error: * Function: test_copy_cdt_merge_cdt * * Purpose: Tests the "merge committed datatypes" feature of H5Ocopy: - * SRC file: - * Create committed datatype (short) - * Create committed datatype (float) - * Create committed datatype (int), with attribute of ndt int - * Create committed datatype (double), with attribute of anon ndt short - * DST file: - * Create committed datatype (int) - * Create committed datatype (float), with attribute of native int - * Create committed datatype (double), with attribute of anon ndt short - * - * Copy / at SRC to DST - * Verify that committed datatypes are copied and merged correctly - * - * NOTE: - * Comparison of attributes are not implemented yet. - * Further tests will be added in the future. + * SRC file: + * Create committed datatype (short) + * Create committed datatype (float) + * Create committed datatype (int), with attribute of ndt int + * Create committed datatype (double), with attribute of anon ndt short + * DST file: + * Create committed datatype (int) + * Create committed datatype (float), with attribute of native int + * Create committed datatype (double), with attribute of anon ndt short + * + * Copy / at SRC to DST + * Verify that committed datatypes are copied and merged correctly + * + * NOTE: + * Comparison of attributes are not implemented yet. + * Further tests will be added in the future. * * Return: Success: 0 * Failure: number of errors @@ -11312,15 +11509,15 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds hid_t fid_src = -1, fid_dst = -1; /* File IDs */ hid_t tid1 = -1, tid2 = -1; /* Datatype IDs */ hid_t tid3 = -1, tid4 = -1; /* Datatype IDs */ - hid_t tid5 = -1, tid = -1; /* Datatype IDs */ + hid_t tid5 = -1, tid = -1; /* Datatype IDs */ hid_t sid = -1; /* Dataspace ID */ - hid_t aid = -1; /* Attribute ID */ + hid_t aid = -1; /* Attribute ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ - hsize_t dim1d[1]; /* dimension sizes */ + hsize_t dim1d[1]; /* dimension sizes */ H5O_info_t oinfo; /* Object info */ - haddr_t exp_addr; /* Expected object addresses */ - char src_filename[NAME_BUF_SIZE]; /* Source file name */ - char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ + haddr_t exp_addr; /* Expected object addresses */ + char src_filename[NAME_BUF_SIZE]; /* Source file name */ + char dst_filename[NAME_BUF_SIZE]; /* Destination file name */ if(reopen) TESTING("H5Ocopy(): merging various committed datatypes with reopen") @@ -11334,8 +11531,8 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds /* Reset file address checking info */ addr_reset(); - /* - * Populate source file + /* + * Populate source file */ if((fid_src = H5Fcreate(src_filename, H5F_ACC_TRUNC, fcpl_src, src_fapl)) < 0) TEST_ERROR @@ -11385,8 +11582,8 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds /* close the SRC file */ if(H5Fclose(fid_src) < 0) TEST_ERROR - /* - * Populate destination file + /* + * Populate destination file */ if((fid_dst = H5Fcreate(dst_filename, H5F_ACC_TRUNC, fcpl_dst, dst_fapl)) < 0) TEST_ERROR @@ -11441,8 +11638,8 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds /* copy everything in SRC to DST */ if(H5Ocopy(fid_src, "/", fid_dst, SRC_ROOT_GROUP, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - /* - * Verification + /* + * Verification */ /* get address of committed datatype: /src_root/src_ndt_double */ if((tid = H5Topen2(fid_dst, "/" SRC_ROOT_GROUP "/" SRC_NDT_DOUBLE, H5P_DEFAULT)) < 0) TEST_ERROR @@ -11506,29 +11703,29 @@ test_copy_cdt_merge_cdt(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t ds error: H5E_BEGIN_TRY { - H5Pclose(ocpypl_id); - H5Tclose(tid); - H5Tclose(tid1); - H5Tclose(tid2); - H5Tclose(tid3); - H5Tclose(tid4); - H5Tclose(tid5); - H5Aclose(aid); - H5Sclose(sid); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Pclose(ocpypl_id); + H5Tclose(tid); + H5Tclose(tid1); + H5Tclose(tid2); + H5Tclose(tid3); + H5Tclose(tid4); + H5Tclose(tid5); + H5Aclose(aid); + H5Sclose(sid); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_cdt_merge_cdt */ - + /*------------------------------------------------------------------------- * Function: test_copy_cdt_merge_suggs * * Purpose: Tests the suggested searching paths feature (H5Padd_merge_committed_dtype_path) - * is correctly applied in merging the committed datatypes. - * + * is correctly applied in merging the committed datatypes. + * * Return: Success: 0 * Failure: number of errors * @@ -11597,7 +11794,7 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Fclose(fid_dst) < 0) TEST_ERROR /* - * Test 1 + * Test 1 */ /* open the source file with read-only */ if((fid_src = H5Fopen(src_filename, H5F_ACC_RDONLY, src_fapl)) < 0) TEST_ERROR @@ -11633,8 +11830,8 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 2 + /* + * Test 2 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -11666,14 +11863,14 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 3 + /* + * Test 3 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR /* remove "/uncopied/src_ndt_int" from DST file */ - if(H5Ldelete(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_INT, H5P_DEFAULT) < 0) TEST_ERROR /* copy "/src_ndt_int" from SRC file to "/uncopied/src_ndt_int" at DST file */ /* use default ocpypl_id -- without merging and suggestion */ @@ -11682,7 +11879,7 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* copy "/src_ndt_int" from SRC file to "/src_ndt_int2" at DST file */ /* copy with merging and search suggestion: "/uncopied/src_ndt_int" */ if(H5Ocopy(fid_src, SRC_NDT_INT, fid_dst, SRC_NDT_INT2, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - + if(reopen) { /* Reopen file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR @@ -11704,8 +11901,8 @@ test_copy_cdt_merge_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 4 + /* + * Test 4 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -11757,13 +11954,13 @@ error: return 1; } /* end test_copy_cdt_merge_suggs */ - + /*------------------------------------------------------------------------- * Function: test_copy_cdt_merge_dset_suggs * * Purpose: Tests the suggested searching paths feature (H5Padd_merge_committed_dtype_path) - * is correctly applied in merging the committed datatypes of datasets. - * + * is correctly applied in merging the committed datatypes of datasets. + * * Return: Success: 0 * Failure: number of errors * @@ -11858,7 +12055,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Sclose(sid) < 0) TEST_ERROR /* - * Test 1 + * Test 1 */ /* open the source file with read-only */ if((fid_src = H5Fopen(src_filename, H5F_ACC_RDONLY, src_fapl)) < 0) TEST_ERROR @@ -11896,8 +12093,8 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 2 + /* + * Test 2 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -11933,14 +12130,14 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 3 + /* + * Test 3 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR /* remove "/uncopied/src_ndt_dset" */ - if(H5Ldelete(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT) < 0) TEST_ERROR + if(H5Ldelete(fid_dst, NAME_GROUP_UNCOPIED "/" SRC_NDT_DSET, H5P_DEFAULT) < 0) TEST_ERROR /* copy "src_ndt_dset" from SRC file to "/uncopied/src_ndt_dset" at DST file */ /* use default ocpypl_id -- without merging and suggestion */ @@ -11949,7 +12146,7 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* copy "src_ndt_dset" from SRC file to "/src_ndt_dset2" at DST file */ /* use merging and suggested searching path: "/uncopied/src_ndt_dset" */ if(H5Ocopy(fid_src, SRC_NDT_DSET, fid_dst, SRC_NDT_DSET2, ocpypl_id, H5P_DEFAULT) < 0) TEST_ERROR - + if(reopen) { /* Reopen file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR @@ -11975,8 +12172,8 @@ test_copy_cdt_merge_dset_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* - * Test 4 + /* + * Test 4 */ /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -12034,12 +12231,12 @@ error: return 1; } /* end test_copy_cdt_merge_dset_suggs */ - + /*------------------------------------------------------------------------- * Function: test_copy_cdt_merge_all_suggs * * Purpose: Tests the merging committed datatype + search suggestion feature. - * + * * Return: Success: 0 * Failure: number of errors * @@ -12058,8 +12255,8 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t aid = -1; /* Attribute ID */ hid_t did = -1; /* Dataset ID */ hid_t exp_did = -1; /* Dataset ID */ - hid_t tid_short = -1; /* Datatype ID */ - hid_t exp_tid = -1; /* Expected datatype ID */ + hid_t tid_short = -1; /* Datatype ID */ + hid_t exp_tid = -1; /* Expected datatype ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ hsize_t dim1d[1]; /* Dataset dimensions */ char src_filename[NAME_BUF_SIZE]; @@ -12115,7 +12312,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* create third dataset in group */ if((did = H5Dcreate2(gid, SRC_DSET, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR - + /* get datatype */ if((tid_short = H5Topen2(fid_src, "/" SRC_GRP "/" SRC_NDT_SHORT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -12244,7 +12441,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 1 */ /* open the source file with read-only */ @@ -12285,7 +12482,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 2 */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -12322,7 +12519,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 3 */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -12357,7 +12554,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 4 */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -12410,7 +12607,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 5 */ /* open destination file */ @@ -12448,7 +12645,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* close the DST file */ if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Test 6 */ /* open destination file */ @@ -12509,7 +12706,7 @@ error: return 1; } /* end test_copy_cdt_merge_all_suggs */ - + /*------------------------------------------------------------------------- * Function: test_copy_set_mcdt_search_cb * @@ -12694,7 +12891,7 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Continue the global search */ if(H5Pset_mcdt_search_cb(ocpypl_id, mcdt_search_cb, &cb_udata) < 0) - TEST_ERROR + TEST_ERROR /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -12729,7 +12926,7 @@ test_copy_set_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Fclose(fid_dst) < 0) TEST_ERROR - /* + /* * Stop the search, default action is to create an anonymous committed datatype */ cb_udata.search_action = H5O_MCDT_SEARCH_STOP; @@ -12865,7 +13062,7 @@ error: return 1; } /* end test_copy_set_mcdt_search_cb */ - + /*------------------------------------------------------------------------- * Function: test_copy_set_get_mcdt_cb * @@ -12911,10 +13108,10 @@ test_copy_set_get_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, int buf[DIM_SIZE_1]; /* Buffer for writing data */ char src_filename[NAME_BUF_SIZE]; char dst_filename[NAME_BUF_SIZE]; - H5O_mcdt_search_cb_t mcdt_cb = NULL; /* The callback function */ - H5O_mcdt_search_ret_t mcdt_udataA; /* User data for callback */ - H5O_mcdt_search_ret_t mcdt_udataB; /* User data for callback */ - H5O_mcdt_search_ret_t *mcdt_udata_p = NULL; /* Pointer to user data for callback */ + H5O_mcdt_search_cb_t mcdt_cb = NULL; /* The callback function */ + H5O_mcdt_search_ret_t mcdt_udataA; /* User data for callback */ + H5O_mcdt_search_ret_t mcdt_udataB; /* User data for callback */ + H5O_mcdt_search_ret_t *mcdt_udata_p = NULL; /* Pointer to user data for callback */ if(reopen) TESTING("H5Ocopy(): H5Pset/get_mcdt_search_cb and reopen") @@ -13044,7 +13241,7 @@ test_copy_set_get_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, /* Continue the global search */ if(H5Pset_mcdt_search_cb(ocpypl_id, mcdt_search_cbA, &mcdt_udataA) < 0) - TEST_ERROR + TEST_ERROR /* open the destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -13077,7 +13274,7 @@ test_copy_set_get_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, mcdt_udataB = H5O_MCDT_SEARCH_STOP; if(H5Pset_mcdt_search_cb(ocpypl_id, mcdt_search_cbA, &mcdt_udataB) < 0) - TEST_ERROR + TEST_ERROR /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -13107,7 +13304,7 @@ test_copy_set_get_mcdt_search_cb(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, if(H5Pfree_merge_committed_dtype_paths(ocpypl_id) < 0) TEST_ERROR if(H5Pset_mcdt_search_cb(ocpypl_id, mcdt_search_cbB, &mcdt_udataB) < 0) - TEST_ERROR + TEST_ERROR /* open destination file */ if((fid_dst = H5Fopen(dst_filename, H5F_ACC_RDWR, dst_fapl)) < 0) TEST_ERROR @@ -13160,7 +13357,7 @@ error: return 1; } /* end test_copy_set_get_mcdt_search_cb */ - + /*------------------------------------------------------------------------- * Function: test_copy_iterate * @@ -13258,7 +13455,7 @@ error: return 1; } /* end test_copy_iterate */ - + /*------------------------------------------------------------------------- * Function: test_copy_option * @@ -13283,7 +13480,7 @@ test_copy_option(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst_fapl, hid_t did = -1; /* Dataset ID */ hid_t gid=-1, gid2=-1, gid_ref=-1; /* Group IDs */ hid_t gid_sub=-1, gid_sub_sub=-1; /* Sub-group ID */ - hid_t pid=-1, lcpl_id=-1; /* Property IDs */ + hid_t pid=-1, lcpl_id=-1; /* Property IDs */ unsigned cpy_flags; /* Object copy flags */ int depth = -1; /* Copy depth */ hsize_t dim2d[2]; @@ -13536,51 +13733,51 @@ error: H5E_BEGIN_TRY { H5Pclose(lcpl_id); H5Pclose(pid); - H5Sclose(sid); - H5Dclose(did); - H5Gclose(gid_ref); - H5Gclose(gid_sub); - H5Gclose(gid2); - H5Gclose(gid); - H5Fclose(fid_dst); - H5Fclose(fid_src); - H5Fclose(fid_ext); + H5Sclose(sid); + H5Dclose(did); + H5Gclose(gid_ref); + H5Gclose(gid_sub); + H5Gclose(gid2); + H5Gclose(gid); + H5Fclose(fid_dst); + H5Fclose(fid_src); + H5Fclose(fid_ext); } H5E_END_TRY; return 1; } /* end test_copy_option */ - + /*------------------------------------------------------------------------- * Function: test_copy_dataset_open * * Purpose: To ensure that H5Ocopy() copies data of opened dataset correctly. - * This is for bug fix HDFFV-7853. - * - * Test Case 1: - * Create a dataset with attributes in SRC file - * Copy the opened dataset to another location in the same file - * Copy the opened dataset to DST file - * Close the dataset - * - * Test Case 2: - * Reopen the dataset, write new data to the dataset - * Copy the opened dataset to another location in the same file - * Copy the opened dataset to to DST file - * Close the dataset - * - * Test Case 3: - * Create a committed datatype - * Create a dataset with the committed datatype in SRC file - * Open the committed datatype - * Copy the opened dataset (with the opened committed datatype) to another location in the same file - * Copy the opened dataset (with the opened committed datatype) to DST file - * Close the dataset and the committed datatype - * - * Test Case 4: - * Create a group with attributes, create a dataset in the group - * Copy the opened group (together with the opened dataset) to another location in the same file - * Copy the opened group (together with the opened dataset) to DST file - * Close the group and the dataset + * This is for bug fix HDFFV-7853. + * + * Test Case 1: + * Create a dataset with attributes in SRC file + * Copy the opened dataset to another location in the same file + * Copy the opened dataset to DST file + * Close the dataset + * + * Test Case 2: + * Reopen the dataset, write new data to the dataset + * Copy the opened dataset to another location in the same file + * Copy the opened dataset to to DST file + * Close the dataset + * + * Test Case 3: + * Create a committed datatype + * Create a dataset with the committed datatype in SRC file + * Open the committed datatype + * Copy the opened dataset (with the opened committed datatype) to another location in the same file + * Copy the opened dataset (with the opened committed datatype) to DST file + * Close the dataset and the committed datatype + * + * Test Case 4: + * Create a group with attributes, create a dataset in the group + * Copy the opened group (together with the opened dataset) to another location in the same file + * Copy the opened group (together with the opened dataset) to DST file + * Close the group and the dataset * * Return: Success: 0 * Failure: number of errors @@ -13658,16 +13855,16 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* write data to the dataset */ if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) TEST_ERROR if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) TEST_ERROR - + /* attach attributes to the dataset */ if(test_copy_attach_attributes(did, H5T_NATIVE_INT) < 0) TEST_ERROR if(test_copy_attach_attributes(did2, H5T_NATIVE_INT) < 0) TEST_ERROR - /* - * Test case 1 + /* + * Test case 1 */ - /* + /* * Copy within the same file */ /* copy the opened dataset to another location in SRC file */ @@ -13686,7 +13883,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst if(H5Dclose(did3) < 0) TEST_ERROR if(H5Dclose(did4) < 0) TEST_ERROR - /* + /* * Copy to another file */ /* copy the opened dataset from SRC to DST */ @@ -13709,8 +13906,8 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst if(H5Dclose(did) < 0) TEST_ERROR if(H5Dclose(did2) < 0) TEST_ERROR - /* - * Test case 2 + /* + * Test case 2 */ /* reopen the dataset in SRC file */ if((did = H5Dopen2(fid_src, NAME_DATASET_SIMPLE, H5P_DEFAULT)) < 0) TEST_ERROR @@ -13720,7 +13917,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, newbuf) < 0) TEST_ERROR if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, newbuf) < 0) TEST_ERROR - /* + /* * Copy within the same file */ /* copy the opened dataset to another location in SRC file */ @@ -13738,7 +13935,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* close the copied dataset in SRC file */ if(H5Dclose(did3) < 0) TEST_ERROR if(H5Dclose(did4) < 0) TEST_ERROR - /* + /* * Copy to another file */ /* copy the opened dataset from SRC to DST */ @@ -13761,8 +13958,8 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst if(H5Dclose(did) < 0) TEST_ERROR if(H5Dclose(did2) < 0) TEST_ERROR - /* - * Test case 3 + /* + * Test case 3 */ /* make a copy of the datatype */ @@ -13783,7 +13980,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* write data to the dataset */ if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) TEST_ERROR - /* + /* * Copy within the same file */ /* copy the opened dataset (with the opened committed datatype) to another location in SRC file */ @@ -13798,7 +13995,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* close the copied dataset in SRC file */ if(H5Dclose(did2) < 0) TEST_ERROR - /* + /* * Copy to another file */ /* copy the opened dataset (with the opened committed datatype) from SRC to DST */ @@ -13819,8 +14016,8 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* close the committed datatype at SRC file */ if(H5Tclose(tid) < 0) TEST_ERROR - /* - * Test case 4 + /* + * Test case 4 */ /* create a group in SRC file */ if((gid = H5Gcreate2(fid_src, NAME_GROUP_TOP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) TEST_ERROR @@ -13833,7 +14030,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* write data to the dataset */ if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) TEST_ERROR - /* + /* * Copy within the same file */ /* copy the opened group (together with opened dataset) to another location in SRC file */ @@ -13848,7 +14045,7 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst /* close the DST dataset */ if(H5Gclose(gid2) < 0) TEST_ERROR - /* + /* * Copy to another file */ /* copy the opened group (together with opened dataset) to DST file */ @@ -13883,20 +14080,20 @@ test_copy_dataset_open(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t dst error: H5E_BEGIN_TRY { - H5Dclose(did); - H5Dclose(did2); - H5Sclose(sid); - H5Gclose(gid); - H5Gclose(gid2); - H5Fclose(fid_dst); - H5Fclose(fid_src); + H5Dclose(did); + H5Dclose(did2); + H5Sclose(sid); + H5Gclose(gid); + H5Gclose(gid2); + H5Fclose(fid_dst); + H5Fclose(fid_src); } H5E_END_TRY; return 1; } /* end test_copy_dataset_open */ - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * * Purpose: Test H5Ocopy() * @@ -13917,11 +14114,11 @@ int main(void) { int nerrors = 0; - hid_t fapl, fapl2; + hid_t fapl, fapl2; hid_t fcpl_shared, ocpl; unsigned max_compact, min_dense; int configuration; /* Configuration of tests. */ - int ExpressMode; + int ExpressMode; hbool_t same_file; /* Whether to run tests that only use one file */ /* Setup */ @@ -13999,7 +14196,7 @@ main(void) } } /* end if */ else { - puts("Testing with oldest file format for source file:"); + puts("Testing with oldest file format for source file:"); src_fapl = fapl; num_attributes_g = 4; } /* end else */ @@ -14017,6 +14214,7 @@ main(void) /* The tests... */ nerrors += test_copy_dataset_simple(fcpl_src, fcpl_dst, src_fapl, dst_fapl); + nerrors += test_copy_dataset_versionbounds(fcpl_src, src_fapl); nerrors += test_copy_dataset_simple_samefile(fcpl_src, src_fapl); /* Test with dataset opened in the file or not */ @@ -14073,10 +14271,10 @@ main(void) FALSE, "H5Ocopy(): expand soft link"); nerrors += test_copy_option(fcpl_src, fcpl_dst, src_fapl, dst_fapl, H5O_COPY_EXPAND_EXT_LINK_FLAG, - FALSE, "H5Ocopy: expand external link"); + FALSE, "H5Ocopy(): expand external link"); nerrors += test_copy_option(fcpl_src, fcpl_dst, src_fapl, dst_fapl, H5O_COPY_EXPAND_SOFT_LINK_FLAG | H5O_COPY_EXPAND_EXT_LINK_FLAG, - FALSE, "H5Ocopy: expand soft and external links"); + FALSE, "H5Ocopy(): expand soft and external links"); nerrors += test_copy_option(fcpl_src, fcpl_dst, src_fapl, dst_fapl, H5O_COPY_SHALLOW_HIERARCHY_FLAG, FALSE, "H5Ocopy(): shallow group copy"); diff --git a/test/ohdr.c b/test/ohdr.c index 3915b38..e886bf9 100644 --- a/test/ohdr.c +++ b/test/ohdr.c @@ -738,49 +738,100 @@ error: return FAIL; } /* test_unknown() */ +#define STR_EARLIEST "earliest" +#define STR_V18 "v18" +#define STR_LATEST "latest" +char *version_string(H5F_libver_t libver) +{ + char *str = NULL; + + str = (char *) HDmalloc(20); + if (str == NULL) + { + fprintf(stderr, "Allocation failed\n"); + exit(1); + } + + switch(libver) { + case H5F_LIBVER_EARLIEST: + strcpy(str, STR_EARLIEST); + break; + + case H5F_LIBVER_V18: + strcpy(str, STR_V18); + break; + + case H5F_LIBVER_V110: + HDassert(H5F_LIBVER_LATEST == H5F_LIBVER_V110); + strcpy(str, STR_LATEST); + break; + + case H5F_LIBVER_ERROR: + case H5F_LIBVER_NBOUNDS: + default: + sprintf(str, "%ld", (long)libver); + break; + } /* end switch */ + + /* Return the formed version bound string */ + return(str); +} /* end of version_string */ + /*------------------------------------------------------------------------- * Function: main * * Purpose: Exercise private object header behavior and routines * - * Return: Success: 0 - * Failure: 1 + * Return: Success: 0 + * Failure: 1 * * Programmer: Robb Matzke * Tuesday, November 24, 1998 * + * Modification: + * - Added loop of combinations of low/high library format bounds + * (BMR, Feb 2018) + * *------------------------------------------------------------------------- */ int main(void) { - hid_t fapl = -1, file = -1; - H5F_t *f = NULL; - char filename[1024]; - H5O_hdr_info_t hdr_info; /* Object info */ - H5O_loc_t oh_loc; /* Object header locations */ - time_t time_new, ro; - int i; /* Local index variable */ - unsigned b; /* Index for "new format" loop */ - herr_t ret; /* Generic return value */ + hid_t fapl = -1; + hid_t file = -1; + H5F_t *f = NULL; + char filename[1024]; + H5O_hdr_info_t hdr_info; /* Object info */ + H5O_loc_t oh_loc; /* Object header locations */ + H5F_libver_t low, high; /* File format bounds */ + time_t time_new, ro; + unsigned b; /* Index for "new format" loop */ + char msg[80]; /* Message for file format version */ + int i; /* Local index variable */ + herr_t ret; /* Generic return value */ /* Reset library */ h5_reset(); fapl = h5_fileaccess(); h5_fixname(FILENAME[0], fapl, filename, sizeof filename); - /* Loop over old & new formats */ - for(b = FALSE; b <= TRUE; b++) { - /* Display info about testing */ - if(b) - HDputs("Using new file format:"); - else - HDputs("Using default file format:"); + /* Loop through all the combinations of low/high library format bounds */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { - /* Set the format to use for the file */ - if(H5Pset_libver_bounds(fapl, (b ? H5F_LIBVER_LATEST : H5F_LIBVER_EARLIEST), H5F_LIBVER_LATEST) < 0) - FAIL_STACK_ERROR + /* Set version bounds before opening the file */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Display info about testing */ + sprintf(msg, "Using file format version: (%s, %s)", version_string(low), + version_string(high)); + HDputs(msg); /* test on object continuation block */ if(test_cont(filename, fapl) < 0) @@ -977,7 +1028,9 @@ main(void) /* Test object header creation metadata cache issues */ if(test_ohdr_cache(filename, fapl) < 0) TEST_ERROR - } /* end for */ + + } /* high */ + } /* low */ /* Verify symbol table messages are cached */ if(h5_verify_cached_stabs(FILENAME, fapl) < 0) TEST_ERROR diff --git a/test/set_extent.c b/test/set_extent.c index b9536e5..5d11819 100644 --- a/test/set_extent.c +++ b/test/set_extent.c @@ -427,20 +427,50 @@ error: */ static int do_layouts( hid_t fapl ) { + hid_t new_fapl = -1; + H5F_libver_t low, high; /* Low and high bounds */ + herr_t ret; /* Generic return value */ - TESTING("storage layout use"); + TESTING("storage layout use - tested with all low/high library format bounds"); + /* Loop through all the combinations of low/high library format bounds */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { - if (test_layouts( H5D_COMPACT, fapl ) < 0) - goto error; + /* Copy plist to use locally to avoid modifying the original */ + new_fapl = H5Pcopy(fapl); - if (test_layouts( H5D_CONTIGUOUS, fapl ) < 0) - goto error; + /* Set version bounds */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + { + if (H5Pclose(new_fapl) < 0) + goto error; + continue; + } + + if (test_layouts( H5D_COMPACT, new_fapl ) < 0) + goto error; + + if (test_layouts( H5D_CONTIGUOUS, new_fapl ) < 0) + goto error; + + if (H5Pclose(new_fapl) < 0) + goto error; + } /* end for high */ + } /* end for low */ PASSED(); return 0; error: + H5E_BEGIN_TRY + { + H5Pclose(new_fapl); + } H5E_END_TRY; return -1; } diff --git a/test/tarray.c b/test/tarray.c index 3ce0f6a..99f7bf8 100644 --- a/test/tarray.c +++ b/test/tarray.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: tarray +* Test program: tarray * * Test the Array Datatype functionality * @@ -26,7 +26,7 @@ #define TESTFILE "tarrold.h5" /* 1-D array datatype */ -#define ARRAY1_RANK 1 +#define ARRAY1_RANK 1 #define ARRAY1_DIM1 4 /* 3-D array datatype */ @@ -65,7 +65,7 @@ typedef struct void *test_array_alloc_custom(size_t size, void *info); void test_array_free_custom(void *mem, void *info); - + /*------------------------------------------------------------------------- * Function: test_array_atomic_1d * @@ -189,7 +189,7 @@ test_array_atomic_1d(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_array_atomic_1d() */ - + /*------------------------------------------------------------------------- * Function: test_array_funcs * @@ -252,7 +252,7 @@ test_array_funcs(void) CHECK(ret, FAIL, "H5Tclose"); } /* end test_array_funcs() */ - + /*------------------------------------------------------------------------- * Function: test_array_atomic_3d * @@ -381,7 +381,7 @@ test_array_atomic_3d(void) } /* end test_array_atomic_3d() */ - + /*------------------------------------------------------------------------- * Function: test_array_array_atomic * @@ -540,7 +540,7 @@ test_array_array_atomic(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_array_array_atomic() */ - + /*------------------------------------------------------------------------- * Function: test_array_compound_atomic * @@ -747,7 +747,7 @@ test_array_compound_atomic(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_array_compound_atomic() */ - + /*------------------------------------------------------------------------- * Function: test_array_compound_array * @@ -1006,7 +1006,7 @@ test_array_compound_array(void) ** allocated. ** ****************************************************************/ - + /*------------------------------------------------------------------------- * Function: test_array_alloc_custom * @@ -1045,7 +1045,7 @@ test_array_alloc_custom(size_t size, void *info) return ret_value; } /* end test_array_alloc_custom() */ - + /*------------------------------------------------------------------------- * Function: test_array_free_custom * @@ -1081,7 +1081,7 @@ test_array_free_custom(void *_mem, void *info) return; } /* end test_array_free_custom() */ - + /*------------------------------------------------------------------------- * Function: test_array_vlen_atomic * @@ -1296,7 +1296,7 @@ test_array_vlen_atomic(void) } /* end test_array_vlen_atomic() */ - + /*------------------------------------------------------------------------- * Function: test_array_vlen_array * @@ -1551,7 +1551,7 @@ test_array_vlen_array(void) } /* end test_array_vlen_array() */ - + /*------------------------------------------------------------------------- * Function: test_array_bkg * @@ -1580,9 +1580,9 @@ test_array_bkg(void) unsigned ndims[3] = {1,1,1}; typedef struct { - int a[ALEN]; - float b[ALEN]; - double c[ALEN]; + int a[ALEN]; + float b[ALEN]; + double c[ALEN]; } CmpField; CmpField cf[LENGTH]; @@ -1855,7 +1855,7 @@ test_array_bkg(void) HDfree(dtsinfo); } /* end test_array_bkg() */ - + /*------------------------------------------------------------------------- * Function: test_compat * @@ -2150,7 +2150,7 @@ test_compat(void) } /* end test_compat() */ - + /*------------------------------------------------------------------------- * Function: test_array * @@ -2183,7 +2183,7 @@ test_array(void) } /* end test_array() */ - + /*------------------------------------------------------------------------- * Function: cleanup_array * diff --git a/test/tattr.c b/test/tattr.c index 57b0e64..525898d 100644 --- a/test/tattr.c +++ b/test/tattr.c @@ -151,7 +151,7 @@ static herr_t attr_op1(hid_t loc_id, const char *name, const H5A_info_t *ainfo, void *op_data); - + /**************************************************************** ** ** test_attr_basic_write(): Test basic H5A (attribute) code. @@ -391,7 +391,7 @@ test_attr_basic_write(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_basic_write() */ - + /**************************************************************** ** ** test_attr_basic_read(): Test basic H5A (attribute) code. @@ -482,7 +482,7 @@ test_attr_basic_read(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_basic_read() */ - + /**************************************************************** ** ** test_attr_flush(): Test H5A (attribute) code for performing @@ -549,7 +549,7 @@ test_attr_flush(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_flush() */ - + /**************************************************************** ** ** test_attr_plist(): Test Attribute Creation Property Lists @@ -662,7 +662,7 @@ test_attr_plist(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_plist() */ - + /**************************************************************** ** ** test_attr_compound_write(): Test H5A (attribute) code. @@ -751,7 +751,7 @@ test_attr_compound_write(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_compound_write() */ - + /**************************************************************** ** ** test_attr_compound_read(): Test basic H5A (attribute) code. @@ -901,7 +901,7 @@ test_attr_compound_read(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_compound_read() */ - + /**************************************************************** ** ** test_attr_scalar_write(): Test scalar H5A (attribute) writing code. @@ -967,7 +967,7 @@ test_attr_scalar_write(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_scalar_write() */ - + /**************************************************************** ** ** test_attr_scalar_read(): Test scalar H5A (attribute) reading code. @@ -1038,7 +1038,7 @@ test_attr_scalar_read(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_scalar_read() */ - + /**************************************************************** ** ** test_attr_mult_write(): Test basic H5A (attribute) code. @@ -1159,7 +1159,7 @@ test_attr_mult_write(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_mult_write() */ - + /**************************************************************** ** ** test_attr_mult_read(): Test basic H5A (attribute) code. @@ -1381,7 +1381,7 @@ test_attr_mult_read(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_mult_read() */ - + /**************************************************************** ** ** attr_op1(): Attribute operator @@ -1421,7 +1421,7 @@ attr_op1(hid_t H5_ATTR_UNUSED loc_id, const char *name, const H5A_info_t H5_ATTR return(ret); } /* end attr_op1() */ - + /**************************************************************** ** ** test_attr_iterate(): Test H5A (attribute) iterator code. @@ -1493,7 +1493,7 @@ test_attr_iterate(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_iterate() */ - + /**************************************************************** ** ** test_attr_delete(): Test H5A (attribute) code for deleting objects. @@ -1613,7 +1613,7 @@ test_attr_delete(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_delete() */ - + /**************************************************************** ** ** test_attr_dtype_shared(): Test H5A (attribute) code for using @@ -1790,7 +1790,7 @@ test_attr_dtype_shared(hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dtype_shared() */ - + /**************************************************************** ** ** test_attr_duplicate_ids(): Test operations with more than @@ -2035,7 +2035,7 @@ test_attr_duplicate_ids(hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_duplicate_ids() */ - + /**************************************************************** ** ** test_attr_dense_verify(): Test basic H5A (attribute) code. @@ -2105,7 +2105,7 @@ test_attr_dense_verify(hid_t loc_id, unsigned max_attr) return(-1); } /* test_attr_dense_verify() */ - + /**************************************************************** ** ** test_attr_dense_create(): Test basic H5A (attribute) code. @@ -2236,7 +2236,7 @@ test_attr_dense_create(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_create() */ - + /**************************************************************** ** ** test_attr_dense_open(): Test basic H5A (attribute) code. @@ -2375,7 +2375,7 @@ test_attr_dense_open(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_open() */ - + /**************************************************************** ** ** test_attr_dense_delete(): Test basic H5A (attribute) code. @@ -2553,7 +2553,7 @@ test_attr_dense_delete(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_delete() */ - + /**************************************************************** ** ** test_attr_dense_rename(): Test basic H5A (attribute) code. @@ -2712,7 +2712,7 @@ test_attr_dense_rename(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_rename() */ - + /**************************************************************** ** ** test_attr_dense_unlink(): Test basic H5A (attribute) code. @@ -2842,7 +2842,7 @@ test_attr_dense_unlink(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_unlink() */ - + /**************************************************************** ** ** test_attr_dense_limits(): Test basic H5A (attribute) code. @@ -3007,7 +3007,7 @@ test_attr_dense_limits(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_dense_limits() */ - + /**************************************************************** ** ** test_attr_dense_dup_ids(): Test operations with multiple ID @@ -3530,7 +3530,7 @@ test_attr_dense_dup_ids(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_dense_dup_ids() */ - + /**************************************************************** ** ** test_attr_big(): Test basic H5A (attribute) code. @@ -3800,7 +3800,7 @@ test_attr_big(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_big() */ - + /**************************************************************** ** ** test_attr_null_space(): Test basic H5A (attribute) code. @@ -4018,7 +4018,7 @@ test_attr_null_space(hid_t fcpl, hid_t fapl) VERIFY(filesize, empty_filesize, "h5_get_file_size"); } /* test_attr_null_space() */ - + /**************************************************************** ** ** test_attr_deprec(): Test basic H5A (attribute) code. @@ -4127,7 +4127,7 @@ test_attr_deprec(hid_t fcpl, hid_t fapl) #endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* test_attr_deprec() */ - + /**************************************************************** ** ** test_attr_many(): Test basic H5A (attribute) code. @@ -4256,7 +4256,7 @@ test_attr_many(hbool_t new_format, hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_many() */ - + /**************************************************************** ** ** test_attr_corder_create_empty(): Test basic H5A (attribute) code. @@ -4372,7 +4372,7 @@ test_attr_corder_create_basic(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_corder_create_basic() */ - + /**************************************************************** ** ** test_attr_corder_create_compact(): Test basic H5A (attribute) code. @@ -4570,7 +4570,7 @@ test_attr_corder_create_compact(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_corder_create_compact() */ - + /**************************************************************** ** ** test_attr_corder_create_dense(): Test basic H5A (attribute) code. @@ -4797,7 +4797,7 @@ test_attr_corder_create_dense(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Fclose"); } /* test_attr_corder_create_dense() */ - + /**************************************************************** ** ** test_attr_corder_create_reopen(): Test basic H5A (attribute) code. @@ -4905,7 +4905,7 @@ test_attr_corder_create_reopen(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_corder_create_reopen() */ - + /**************************************************************** ** ** test_attr_corder_transition(): Test basic H5A (attribute) code. @@ -5311,7 +5311,7 @@ test_attr_corder_transition(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_corder_transition() */ - + /**************************************************************** ** ** test_attr_corder_delete(): Test basic H5A (attribute) code. @@ -5512,7 +5512,7 @@ test_attr_corder_delete(hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_corder_delete() */ - + /*------------------------------------------------------------------------- * Function: attr_info_by_idx_check * @@ -5659,7 +5659,7 @@ attr_info_by_idx_check(hid_t obj_id, const char *attrname, hsize_t n, return(-1); } /* end attr_info_by_idx_check() */ - + /**************************************************************** ** ** test_attr_info_by_idx(): Test basic H5A (attribute) code. @@ -5869,7 +5869,7 @@ test_attr_info_by_idx(hbool_t new_format, hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_info_by_idx() */ - + /**************************************************************** ** ** test_attr_delete_by_idx(): Test basic H5A (attribute) code. @@ -6401,7 +6401,7 @@ test_attr_delete_by_idx(hbool_t new_format, hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_delete_by_idx() */ - + /**************************************************************** ** ** attr_iterate2_cb(): Revised attribute operator @@ -6475,7 +6475,7 @@ HDfprintf(stderr, "op_data->curr = %Hd\n", op_data->curr); } /* end attr_iterate2_cb() */ #ifndef H5_NO_DEPRECATED_SYMBOLS - + /**************************************************************** ** ** attr_iterate1_cb(): Attribute operator @@ -6488,7 +6488,7 @@ attr_iterate1_cb(hid_t loc_id, const char *attr_name, void *_op_data) } /* end attr_iterate1_cb() */ #endif /* H5_NO_DEPRECATED_SYMBOLS */ - + /*------------------------------------------------------------------------- * Function: attr_iterate2_fail_cb * @@ -6510,7 +6510,7 @@ attr_iterate2_fail_cb(hid_t H5_ATTR_UNUSED group_id, const char H5_ATTR_UNUSED * return(H5_ITER_ERROR); } /* end attr_iterate2_fail_cb() */ - + /*------------------------------------------------------------------------- * Function: attr_iterate_check * @@ -6810,7 +6810,7 @@ attr_iterate_check(hid_t fid, const char *dsetname, hid_t obj_id, return(-1); } /* end attr_iterate_check() */ - + /**************************************************************** ** ** test_attr_iterate2(): Test basic H5A (attribute) code. @@ -7114,7 +7114,7 @@ test_attr_iterate2(hbool_t new_format, hid_t fcpl, hid_t fapl) HDfree(visited); } /* test_attr_iterate2() */ - + /*------------------------------------------------------------------------- * Function: attr_open_by_idx_check * @@ -7174,7 +7174,7 @@ attr_open_by_idx_check(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, return(-1); } /* end attr_open_by_idx_check() */ - + /**************************************************************** ** ** test_attr_open_by_idx(): Test basic H5A (attribute) code. @@ -7436,7 +7436,7 @@ test_attr_open_by_idx(hbool_t new_format, hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_open_by_idx() */ - + /*------------------------------------------------------------------------- * Function: attr_open_check * @@ -7522,7 +7522,7 @@ attr_open_check(hid_t fid, const char *dsetname, hid_t obj_id, return(-1); } /* end attr_open_check() */ - + /**************************************************************** ** ** test_attr_open_by_name(): Test basic H5A (attribute) code. @@ -7777,7 +7777,7 @@ test_attr_open_by_name(hbool_t new_format, hid_t fcpl, hid_t fapl) CHECK(ret, FAIL, "H5Sclose"); } /* test_attr_open_by_name() */ - + /**************************************************************** ** ** test_attr_create_by_name(): Test basic H5A (attribute) code. @@ -10864,7 +10864,7 @@ test_attr(void) CHECK(ret, FAIL, "H5Pclose"); } /* test_attr() */ - + /*------------------------------------------------------------------------- * Function: cleanup_attr * diff --git a/test/tconfig.c b/test/tconfig.c index 7fbdf36..b652ca4 100644 --- a/test/tconfig.c +++ b/test/tconfig.c @@ -39,22 +39,22 @@ /* Needs this extra step so that we can print the macro name. */ #define vrfy_macrosize(type, macro, macroname) \ if (sizeof(type) != macro) \ - TestErrPrintf("Error: sizeof(%s) is %zu but %s is %d\n", \ - #type, sizeof(type), macroname, (int)macro); + TestErrPrintf("Error: sizeof(%s) is %zu but %s is %d\n", \ + #type, sizeof(type), macroname, (int)macro); /* local routine prototypes */ void test_config_ctypes(void); void test_exit_definitions(void); - + /*------------------------------------------------------------------------- - * Function: test_configure + * Function: test_configure * - * Purpose: Main configure definitions testing routine + * Purpose: Main configure definitions testing routine * - * Return: none (error is fed back via global variable num_errs) + * Return: none (error is fed back via global variable num_errs) * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * September 25, 2001 * *------------------------------------------------------------------------- @@ -68,15 +68,15 @@ test_configure(void) test_exit_definitions(); } - + /*------------------------------------------------------------------------- - * Function: cleanup_configure + * Function: cleanup_configure * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * September 25, 2001 * * Modifications: @@ -89,20 +89,20 @@ cleanup_configure(void) /* no file to clean */ } - + /*------------------------------------------------------------------------- - * Function: test_config_ctypes + * Function: test_config_ctypes * - * Purpose: test C language data type sizes + * Purpose: test C language data type sizes * - * Return: none (error is fed back via global variable num_errs) + * Return: none (error is fed back via global variable num_errs) * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * September 25, 2001 * * Modifications: - * Albert Cheng, 2004/10/14 - * Verified both signed and unsigned int types. + * Albert Cheng, 2004/10/14 + * Verified both signed and unsigned int types. * *------------------------------------------------------------------------- */ @@ -200,15 +200,15 @@ test_config_ctypes(void) } - + /*------------------------------------------------------------------------- - * Function: test_exit_definitions + * Function: test_exit_definitions * - * Purpose: test the exit macros values + * Purpose: test the exit macros values * - * Return: none (error is fed back via global variable num_errs) + * Return: none (error is fed back via global variable num_errs) * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * October 12, 2009 * * Modifications: @@ -221,9 +221,9 @@ test_exit_definitions(void) /* Verify the EXIT_SUCCESS and EXIT_FAILURE are 0 and 1 respectively. */ /* This should be true for POSIX compliant systems. */ if (EXIT_SUCCESS != 0) \ - TestErrPrintf("Error: EXIT_SUCCESS is %d, should be %d\n", \ - EXIT_SUCCESS, 0); + TestErrPrintf("Error: EXIT_SUCCESS is %d, should be %d\n", \ + EXIT_SUCCESS, 0); if (EXIT_FAILURE != 1) \ - TestErrPrintf("Error: EXIT_FAILURE is %d, should be %d\n", \ - EXIT_FAILURE, 1); + TestErrPrintf("Error: EXIT_FAILURE is %d, should be %d\n", \ + EXIT_FAILURE, 1); } diff --git a/test/testfiles/plist_files/dapl_32be b/test/testfiles/plist_files/dapl_32be Binary files differindex 4dedda2..8dcf239 100644 --- a/test/testfiles/plist_files/dapl_32be +++ b/test/testfiles/plist_files/dapl_32be diff --git a/test/testfiles/plist_files/dapl_32le b/test/testfiles/plist_files/dapl_32le Binary files differindex 4dedda2..8dcf239 100644 --- a/test/testfiles/plist_files/dapl_32le +++ b/test/testfiles/plist_files/dapl_32le diff --git a/test/testfiles/plist_files/dapl_64be b/test/testfiles/plist_files/dapl_64be Binary files differindex 4dedda2..8dcf239 100644 --- a/test/testfiles/plist_files/dapl_64be +++ 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b/test/testfiles/plist_files/lapl_64le diff --git a/test/tfile.c b/test/tfile.c index 9391458..de1f362 100644 --- a/test/tfile.c +++ b/test/tfile.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: tfile +* Test program: tfile * * Test the low-level file I/O features. * @@ -23,15 +23,31 @@ #include "H5srcdir.h" #include "H5Bprivate.h" +#include "H5Iprivate.h" #include "H5Pprivate.h" /* * This file needs to access private information from the H5F package. * This file also needs to access the file testing code. */ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ #define H5F_TESTING -#include "H5Fpkg.h" /* File access */ +#include "H5Fpkg.h" /* File access */ + +#define H5D_FRIEND /*suppress error about including H5Dpkg */ +#include "H5Dpkg.h" /* Dataset access */ + +#define H5S_FRIEND /*suppress error about including H5Spkg */ +#include "H5Spkg.h" /* Dataspace */ + +#define H5T_FRIEND /*suppress error about including H5Tpkg */ +#include "H5Tpkg.h" /* Datatype */ + +#define H5A_FRIEND /*suppress error about including H5Apkg */ +#include "H5Apkg.h" /* Attributes */ + +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#include "H5Opkg.h" /* Object headers */ #define BAD_USERBLOCK_SIZE1 (hsize_t)1 #define BAD_USERBLOCK_SIZE2 (hsize_t)2 @@ -42,46 +58,46 @@ #define BAD_USERBLOCK_SIZE7 (hsize_t)6144 #define F1_USERBLOCK_SIZE (hsize_t)0 -#define F1_OFFSET_SIZE sizeof(haddr_t) -#define F1_LENGTH_SIZE sizeof(hsize_t) -#define F1_SYM_LEAF_K 4 -#define F1_SYM_INTERN_K 16 -#define FILE1 "tfile1.h5" -#define SFILE1 "sys_file1" +#define F1_OFFSET_SIZE sizeof(haddr_t) +#define F1_LENGTH_SIZE sizeof(hsize_t) +#define F1_SYM_LEAF_K 4 +#define F1_SYM_INTERN_K 16 +#define FILE1 "tfile1.h5" +#define SFILE1 "sys_file1" #define REOPEN_FILE "tfile_reopen.h5" #define REOPEN_DSET "dset" #define F2_USERBLOCK_SIZE (hsize_t)512 -#define F2_OFFSET_SIZE 8 -#define F2_LENGTH_SIZE 8 -#define F2_SYM_LEAF_K 8 -#define F2_SYM_INTERN_K 32 +#define F2_OFFSET_SIZE 8 +#define F2_LENGTH_SIZE 8 +#define F2_SYM_LEAF_K 8 +#define F2_SYM_INTERN_K 32 #define F2_RANK 2 #define F2_DIM0 4 #define F2_DIM1 6 #define F2_DSET "dset" -#define FILE2 "tfile2.h5" +#define FILE2 "tfile2.h5" #define F3_USERBLOCK_SIZE (hsize_t)0 -#define F3_OFFSET_SIZE F2_OFFSET_SIZE -#define F3_LENGTH_SIZE F2_LENGTH_SIZE -#define F3_SYM_LEAF_K F2_SYM_LEAF_K -#define F3_SYM_INTERN_K F2_SYM_INTERN_K -#define FILE3 "tfile3.h5" +#define F3_OFFSET_SIZE F2_OFFSET_SIZE +#define F3_LENGTH_SIZE F2_LENGTH_SIZE +#define F3_SYM_LEAF_K F2_SYM_LEAF_K +#define F3_SYM_INTERN_K F2_SYM_INTERN_K +#define FILE3 "tfile3.h5" #define GRP_NAME "/group" #define DSET_NAME "dataset" #define ATTR_NAME "attr" #define TYPE_NAME "type" -#define FILE4 "tfile4.h5" +#define FILE4 "tfile4.h5" #define OBJ_ID_COUNT_0 0 #define OBJ_ID_COUNT_1 1 #define OBJ_ID_COUNT_2 2 #define OBJ_ID_COUNT_3 3 #define OBJ_ID_COUNT_4 4 -#define OBJ_ID_COUNT_6 6 +#define OBJ_ID_COUNT_6 6 #define OBJ_ID_COUNT_8 8 #define GROUP1 "Group1" @@ -111,22 +127,22 @@ #define FSP_SIZE1G 1024*1024*1024 /* File space page size */ /* Declaration for test_libver_macros2() */ -#define FILE6 "tfile6.h5" /* Test file */ +#define FILE6 "tfile6.h5" /* Test file */ /* Declaration for test_get_obj_ids() */ -#define FILE7 "tfile7.h5" /* Test file */ -#define NGROUPS 2 -#define NDSETS 4 +#define FILE7 "tfile7.h5" /* Test file */ +#define NGROUPS 2 +#define NDSETS 4 /* Files created under 1.6 branch and 1.8 branch--used in test_filespace_compatible() */ -const char *OLD_FILENAME[] = { - "filespace_1_6.h5", /* 1.6 HDF5 file */ - "filespace_1_8.h5" /* 1.8 HDF5 file */ +const char *OLD_FILENAME[] = { + "filespace_1_6.h5", /* 1.6 HDF5 file */ + "filespace_1_8.h5" /* 1.8 HDF5 file */ }; /* Files created in 1.10.0 release --used in test_filespace_1.10.0_compatible() */ /* These files are copied from release 1.10.0 tools/h5format_convert/testfiles */ -const char *OLD_1_10_0_FILENAME[] = { +const char *OLD_1_10_0_FILENAME[] = { "h5fc_ext1_i.h5", /* 0 */ "h5fc_ext1_f.h5", /* 1 */ "h5fc_ext2_if.h5", /* 2 */ @@ -150,6 +166,25 @@ const char *FILESPACE_NAME[] = { NULL }; +/* Local test function declarations for version bounds */ +static void test_libver_bounds_low_high(void); +static void test_libver_bounds_super(hid_t fapl); +static void test_libver_bounds_super_create(hid_t fapl, hid_t fcpl, htri_t is_swmr); +static void test_libver_bounds_super_open(hid_t fapl, hid_t fcpl, htri_t is_swmr); +static void test_libver_bounds_obj(hid_t fapl); +static void test_libver_bounds_dataset(hid_t fapl); +static void test_libver_bounds_dataspace(hid_t fapl); +static void test_libver_bounds_datatype(hid_t fapl); +static void test_libver_bounds_datatype_check(hid_t fapl, hid_t tid); +static void test_libver_bounds_attributes(hid_t fapl); + +#define FILE8 "tfile8.h5" /* Test file */ + +#define DSET_NULL "DSET_NULL" +#define DSET "DSET" +#define DSETA "DSETA" +#define DSETB "DSETB" +#define DSETC "DSETC" static void create_objects(hid_t, hid_t, hid_t *, hid_t *, hid_t *, hid_t *); @@ -171,14 +206,14 @@ static void test_rw_noupdate(void); static void test_file_create(void) { - hid_t fid1, fid2, fid3; /* HDF5 File IDs */ - hid_t tmpl1, tmpl2; /*file creation templates */ - hsize_t ublock; /*sizeof userblock */ - size_t parm; /*file-creation parameters */ - size_t parm2; /*file-creation parameters */ - unsigned iparm; - unsigned iparm2; - herr_t ret; /*generic return value */ + hid_t fid1, fid2, fid3; /* HDF5 File IDs */ + hid_t tmpl1, tmpl2; /*file creation templates */ + hsize_t ublock; /*sizeof userblock */ + size_t parm; /*file-creation parameters */ + size_t parm2; /*file-creation parameters */ + unsigned iparm; + unsigned iparm2; + herr_t ret; /*generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Low-Level File Creation I/O\n")); @@ -430,7 +465,7 @@ test_file_create(void) /* Close third file */ ret = H5Fclose(fid3); CHECK(ret, FAIL, "H5Fclose"); -} /* test_file_create() */ +} /* test_file_create() */ /**************************************************************** ** @@ -440,17 +475,17 @@ test_file_create(void) static void test_file_open(void) { - hid_t fid1, fid2; /*HDF5 File IDs */ + hid_t fid1, fid2; /*HDF5 File IDs */ hid_t did; /*dataset ID */ hid_t fapl_id; /*file access property list ID */ - hid_t tmpl1; /*file creation templates */ - hsize_t ublock; /*sizeof user block */ - size_t parm; /*file-creation parameters */ - size_t parm2; /*file-creation parameters */ - unsigned iparm; - unsigned iparm2; - unsigned intent; - herr_t ret; /*generic return value */ + hid_t tmpl1; /*file creation templates */ + hsize_t ublock; /*sizeof user block */ + size_t parm; /*file-creation parameters */ + size_t parm2; /*file-creation parameters */ + unsigned iparm; + unsigned iparm2; + unsigned intent; + herr_t ret; /*generic return value */ /* * Test single file open @@ -614,7 +649,7 @@ test_file_close(void) { hid_t fid1, fid2; hid_t fapl_id, access_id; - hid_t dataset_id, group_id1, group_id2, group_id3; + hid_t dataset_id, group_id1, group_id2, group_id3; H5F_close_degree_t fc_degree; herr_t ret; @@ -804,7 +839,7 @@ test_file_close(void) /* Create more new files and test object count and ID list functions */ test_obj_count_and_id(fid1, fid2, dataset_id, group_id1, - group_id2, group_id3); + group_id2, group_id3); /* Close first open */ ret = H5Fclose(fid1); @@ -860,22 +895,22 @@ test_file_close(void) CHECK(ret, FAIL, "H5Pget_fclose_degree"); switch(fc_degree) { - case H5F_CLOSE_STRONG: - /* Close first open */ - ret = H5Fclose(fid1); - CHECK(ret, FAIL, "H5Fclose"); - /* Close second open */ - ret = H5Fclose(fid2); - CHECK(ret, FAIL, "H5Fclose"); - break; - case H5F_CLOSE_SEMI: + case H5F_CLOSE_STRONG: + /* Close first open */ + ret = H5Fclose(fid1); + CHECK(ret, FAIL, "H5Fclose"); + /* Close second open */ + ret = H5Fclose(fid2); + CHECK(ret, FAIL, "H5Fclose"); + break; + case H5F_CLOSE_SEMI: /* Close first open */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); - ret = H5Dclose(dataset_id); + ret = H5Dclose(dataset_id); CHECK(ret, FAIL, "H5Dclose"); ret = H5Gclose(group_id1); - CHECK(ret, FAIL, "H5Gclose"); + CHECK(ret, FAIL, "H5Gclose"); ret = H5Gclose(group_id2); CHECK(ret, FAIL, "H5Gclose"); ret = H5Gclose(group_id3); @@ -883,8 +918,8 @@ test_file_close(void) /* Close second open */ ret = H5Fclose(fid2); CHECK(ret, FAIL, "H5Fclose"); - break; - case H5F_CLOSE_WEAK: + break; + case H5F_CLOSE_WEAK: /* Close first open */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); @@ -899,7 +934,7 @@ test_file_close(void) CHECK(ret, FAIL, "H5Gclose"); ret = H5Gclose(group_id3); CHECK(ret, FAIL, "H5Gclose"); - break; + break; case H5F_CLOSE_DEFAULT: default: CHECK(fc_degree, H5F_CLOSE_DEFAULT, "H5Pget_fclose_degree"); @@ -921,10 +956,10 @@ test_file_close(void) ****************************************************************/ static void create_objects(hid_t fid1, hid_t fid2, hid_t *ret_did, hid_t *ret_gid1, - hid_t *ret_gid2, hid_t *ret_gid3) + hid_t *ret_gid2, hid_t *ret_gid3) { - ssize_t oid_count; - herr_t ret; + ssize_t oid_count; + herr_t ret; /* Check reference counts of file IDs and opened object IDs. * The verification is hard-coded. If in any case, this testing @@ -1026,7 +1061,7 @@ create_objects(hid_t fid1, hid_t fid2, hid_t *ret_did, hid_t *ret_gid1, /**************************************************************** ** ** test_get_obj_ids(): Test the bug and the fix for Jira 8528. -** H5Fget_obj_ids overfilled the list of +** H5Fget_obj_ids overfilled the list of ** object IDs by one. This is an enhancement ** for test_obj_count_and_id(). ** @@ -1073,14 +1108,14 @@ test_get_obj_ids(void) oid_list = (hid_t *)HDcalloc((size_t)oid_list_size, sizeof(hid_t)); CHECK_PTR(oid_list, "HDcalloc"); - /* Call the public function H5F_get_obj_ids to use H5F_get_objects. User reported having problem here. - * that the returned size (ret_count) from H5Fget_obj_ids is one greater than the size passed in + /* Call the public function H5F_get_obj_ids to use H5F_get_objects. User reported having problem here. + * that the returned size (ret_count) from H5Fget_obj_ids is one greater than the size passed in * (oid_list_size) */ ret_count = H5Fget_obj_ids(fid, H5F_OBJ_ALL, (size_t)oid_list_size, oid_list); CHECK(ret_count, FAIL, "H5Fget_obj_ids"); VERIFY(ret_count, oid_list_size, "H5Fget_obj_count"); - /* Close all object IDs on the list except the file ID. The first ID is supposed to be file ID according + /* Close all object IDs on the list except the file ID. The first ID is supposed to be file ID according * to the library design */ for(i = 0; i< ret_count; i++) { if(fid != oid_list[i]) { @@ -1095,7 +1130,7 @@ test_get_obj_ids(void) CHECK(oid_count, FAIL, "H5Fget_obj_count"); VERIFY(oid_count, NGROUPS + 2, "H5Fget_obj_count"); - /* Get the IDs of the left opend objects */ + /* Get the IDs of the left opend objects */ ret_count = H5Fget_obj_ids(fid, H5F_OBJ_ALL, (size_t)oid_list_size, oid_list); CHECK(ret_count, FAIL, "H5Fget_obj_ids"); VERIFY(ret_count, oid_list_size, "H5Fget_obj_count"); @@ -1107,14 +1142,14 @@ test_get_obj_ids(void) CHECK(ret, FAIL, "H5Oclose"); } } - + H5Sclose(filespace); H5Fclose(fid); HDfree(oid_list); - /* Reopen the file to check whether H5Fget_obj_count and H5Fget_obj_ids still works - * when the file is closed first */ + /* Reopen the file to check whether H5Fget_obj_count and H5Fget_obj_ids still works + * when the file is closed first */ fid = H5Fopen(FILE7, H5F_ACC_RDONLY, H5P_DEFAULT); CHECK(fid, FAIL, "H5Fopen"); @@ -1157,7 +1192,7 @@ static void test_get_file_id(void) { hid_t fid, fid2, fid3; - hid_t datatype_id, dataset_id, dataspace_id, group_id, attr_id; + hid_t datatype_id, dataset_id, dataspace_id, group_id, attr_id; hid_t plist; hsize_t dims[F2_RANK]; unsigned intent; @@ -1315,7 +1350,7 @@ check_file_id(hid_t fid, hid_t object_id) ****************************************************************/ static void test_obj_count_and_id(hid_t fid1, hid_t fid2, hid_t did, hid_t gid1, - hid_t gid2, hid_t gid3) + hid_t gid2, hid_t gid3) { hid_t fid3, fid4; ssize_t oid_count, ret_count; @@ -1356,7 +1391,7 @@ test_obj_count_and_id(hid_t fid1, hid_t fid2, hid_t did, hid_t gid1, oid_count = H5Fget_obj_count((hid_t)H5F_OBJ_ALL, H5F_OBJ_ALL); CHECK(oid_count, FAIL, "H5Fget_obj_count"); VERIFY(oid_count, OBJ_ID_COUNT_8, "H5Fget_obj_count"); - + if(oid_count > 0) { hid_t *oid_list; @@ -1364,8 +1399,8 @@ test_obj_count_and_id(hid_t fid1, hid_t fid2, hid_t did, hid_t gid1, if(oid_list != NULL) { int i; - ret_count = H5Fget_obj_ids((hid_t)H5F_OBJ_ALL, H5F_OBJ_ALL, (size_t)oid_count, oid_list); - CHECK(ret_count, FAIL, "H5Fget_obj_ids"); + ret_count = H5Fget_obj_ids((hid_t)H5F_OBJ_ALL, H5F_OBJ_ALL, (size_t)oid_count, oid_list); + CHECK(ret_count, FAIL, "H5Fget_obj_ids"); for(i = 0; i < oid_count; i++) { H5I_type_t id_type; @@ -1479,11 +1514,11 @@ test_file_perm(void) /**************************************************************** ** ** test_file_perm2(): low-level file test routine. -** This test verifies that no object can be created in a +** This test verifies that no object can be created in a ** file that is opened for read-only. ** *****************************************************************/ -static void +static void test_file_perm2(void) { hid_t file; /* File opened with read-write permission */ @@ -1493,7 +1528,7 @@ test_file_perm2(void) hid_t dset; /* Dataset ID */ hid_t type; /* Datatype ID */ hid_t attr; /* Attribute ID */ - herr_t ret; + herr_t ret; /* Output message about test being performed */ MESSAGE(5, ("Testing Low-Level File Permissions again\n")); @@ -2085,35 +2120,35 @@ test_file_double_dataset_open(void) /**************************************************************** ** ** test_file_double_file_dataset_open(): -** This test checks multi-opens of files & datasets: -** It simulates the multi-thread test program from DLS -** which exposes the file pointer segmentation fault failure. -** NOTE: The order on when the files and datasets are open/close -** is important. +** This test checks multi-opens of files & datasets: +** It simulates the multi-thread test program from DLS +** which exposes the file pointer segmentation fault failure. +** NOTE: The order on when the files and datasets are open/close +** is important. ** *****************************************************************/ static void test_file_double_file_dataset_open(hbool_t new_format) { - hid_t fapl = -1; /* File access property list */ - hid_t dcpl = -1; /* Dataset creation property list */ - hid_t fid1 = -1, fid2 = -1; /* File IDs */ - hid_t did1 = -1, did2 = -1; /* Dataset IDs */ - hid_t sid1 = -1, sid2 = -1; /* Dataspace IDs */ - hid_t tid1 = -1, tid2 = -1; /* Datatype IDs */ - hsize_t dims[1] = {5}, dims2[2] = {1, 4}; /* Dimension sizes */ - hsize_t e_ext_dims[1] = {7}; /* Expanded dimension sizes */ - hsize_t s_ext_dims[1] = {3}; /* Shrunk dimension sizes */ - hsize_t max_dims0[1] = {8}; /* Maximum dimension sizes */ - hsize_t max_dims1[1] = {H5S_UNLIMITED}; /* Maximum dimesion sizes for extensible array index */ - hsize_t max_dims2[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* Maximum dimension sizes for v2 B-tree index */ - hsize_t chunks[1] = {2}, chunks2[2] = {4, 5}; /* Chunk dimension sizes */ + hid_t fapl = -1; /* File access property list */ + hid_t dcpl = -1; /* Dataset creation property list */ + hid_t fid1 = -1, fid2 = -1; /* File IDs */ + hid_t did1 = -1, did2 = -1; /* Dataset IDs */ + hid_t sid1 = -1, sid2 = -1; /* Dataspace IDs */ + hid_t tid1 = -1, tid2 = -1; /* Datatype IDs */ + hsize_t dims[1] = {5}, dims2[2] = {1, 4}; /* Dimension sizes */ + hsize_t e_ext_dims[1] = {7}; /* Expanded dimension sizes */ + hsize_t s_ext_dims[1] = {3}; /* Shrunk dimension sizes */ + hsize_t max_dims0[1] = {8}; /* Maximum dimension sizes */ + hsize_t max_dims1[1] = {H5S_UNLIMITED}; /* Maximum dimesion sizes for extensible array index */ + hsize_t max_dims2[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* Maximum dimension sizes for v2 B-tree index */ + hsize_t chunks[1] = {2}, chunks2[2] = {4, 5}; /* Chunk dimension sizes */ hsize_t size; /* File size */ - const char* data[] = {"String 1", "String 2", "String 3", "String 4", "String 5"}; /* Input Data */ - const char* e_data[] = {"String 1", "String 2", "String 3", "String 4", "String 5", "String 6", "String 7"}; /* Input Data */ - char* buffer[5]; /* Output buffer */ - int wbuf[4] = {1, 2, 3, 4}; /* Input data */ - herr_t ret; /* Generic return value */ + const char* data[] = {"String 1", "String 2", "String 3", "String 4", "String 5"}; /* Input Data */ + const char* e_data[] = {"String 1", "String 2", "String 3", "String 4", "String 5", "String 6", "String 7"}; /* Input Data */ + char* buffer[5]; /* Output buffer */ + int wbuf[4] = {1, 2, 3, 4}; /* Input data */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing double file and dataset open/close\n")); @@ -2134,7 +2169,7 @@ test_file_double_file_dataset_open(hbool_t new_format) /* Create a chunked dataset with fixed array indexing */ sid1 = H5Screate_simple(1, dims, max_dims0); - CHECK(sid1, FAIL, "H5Screate"); + CHECK(sid1, FAIL, "H5Screate_simple"); tid1 = H5Tcopy(H5T_C_S1); CHECK(tid1, FAIL, "H5Tcopy"); ret = H5Tset_size(tid1, H5T_VARIABLE); @@ -2160,7 +2195,7 @@ test_file_double_file_dataset_open(hbool_t new_format) /* Create a chunked dataset with extensible array indexing */ sid1 = H5Screate_simple(1, dims, max_dims1); - CHECK(sid1, FAIL, "H5Screate"); + CHECK(sid1, FAIL, "H5Screate_simple"); tid1 = H5Tcopy(H5T_C_S1); CHECK(tid1, FAIL, "H5Tcopy"); ret = H5Tset_size(tid1, H5T_VARIABLE); @@ -2189,7 +2224,7 @@ test_file_double_file_dataset_open(hbool_t new_format) /* Create a chunked dataset with v2 btree indexing */ sid2 = H5Screate_simple(2, dims2, max_dims2); - CHECK(sid2, FAIL, "H5Screate"); + CHECK(sid2, FAIL, "H5Screate_simple"); dcpl = H5Pcreate(H5P_DATASET_CREATE); CHECK(dcpl, FAIL, "H5Pcreate"); @@ -2216,8 +2251,8 @@ test_file_double_file_dataset_open(hbool_t new_format) ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); - /* - * Scenario 1 + /* + * Scenario 1 */ /* First file open */ @@ -2272,8 +2307,8 @@ test_file_double_file_dataset_open(hbool_t new_format) ret = H5Tclose(tid2); CHECK(ret, FAIL, "H5Tclose"); - /* - * Scenario 2 + /* + * Scenario 2 */ /* First file open */ @@ -2337,7 +2372,7 @@ test_file_double_file_dataset_open(hbool_t new_format) ret = H5Tclose(tid2); CHECK(ret, FAIL, "H5Tclose"); - /* + /* * Scenario 3 */ @@ -2381,10 +2416,10 @@ test_file_double_file_dataset_open(hbool_t new_format) ret = H5Fclose(fid2); CHECK(ret, FAIL, "H5Fclose"); - /* + /* * Scenario 4 * --trigger H5AC_protect: Assertion `f->shared' failed - * from second call to H5Dset_extent->...H5D__earray_idx_remove->H5EA_get...H5EA__iblock_protect...H5AC_protect + * from second call to H5Dset_extent->...H5D__earray_idx_remove->H5EA_get...H5EA__iblock_protect...H5AC_protect */ /* First file open */ fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT); @@ -2693,9 +2728,9 @@ cal_chksum(const char *file, uint32_t *chksum) ** This test checks to ensure that opening and closing a file ** with read/write permissions does not write anything to the ** file if the file does not change. -** Due to the implementation of file locking (status_flags in -** the superblock is used), this test is changed to use checksum -** instead of timestamp to verify the file is not changed. +** Due to the implementation of file locking (status_flags in +** the superblock is used), this test is changed to use checksum +** instead of timestamp to verify the file is not changed. ** ** Programmer: Vailin Choi; July 2013 ** @@ -2704,8 +2739,8 @@ static void test_rw_noupdate(void) { herr_t ret; /* Generic return value */ - hid_t fid; /* File ID */ - uint32_t chksum1, chksum2; /* Checksum value */ + hid_t fid; /* File ID */ + uint32_t chksum1, chksum2; /* Checksum value */ /* Output message about test being performed */ MESSAGE(5, ("Testing to verify that nothing is written if nothing is changed.\n")); @@ -3094,8 +3129,8 @@ test_userblock_alignment(void) ** test_userblock_alignment_paged(): low-level file test routine. ** This test checks to ensure that files with both a userblock and ** alignment interact properly: -** -- alignment via H5Pset_alignment -** -- alignment via paged aggregation +** -- alignment via H5Pset_alignment +** -- alignment via paged aggregation ** ** Programmer: Vailin Choi; March 2013 ** @@ -3111,14 +3146,14 @@ test_userblock_alignment_paged(void) /* Output message about test being performed */ MESSAGE(5, ("Testing interaction between userblock and alignment (via paged aggregation and H5Pset_alignment)\n")); - /* + /* * Case 1: * Userblock size = 0 * Alignment in use = 4096 * Strategy = H5F_FILE_SPACE_PAGE; fsp_size = alignment = 4096 * Outcome: - * Should succeed: - * userblock is 0 and alignment != 0 + * Should succeed: + * userblock is 0 and alignment != 0 */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3149,14 +3184,14 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 2a: * Userblock size = 1024 * Alignment in use = 512 - * Strategy = H5F_FILE_SPACE_PAGE; fsp_size = alignment = 512 + * Strategy = H5F_FILE_SPACE_PAGE; fsp_size = alignment = 512 * H5Pset_alignment() is 3 * Outcome: - * Should succeed: + * Should succeed: * userblock (1024) is integral mult. of alignment (512) */ /* Create file creation property list with user block */ @@ -3185,16 +3220,16 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 2b: * Userblock size = 1024 * Alignment in use = 3 - * Strategy = H5F_FILE_SPACE_AGGR; fsp_size = 512 - * (via default file creation property) + * Strategy = H5F_FILE_SPACE_AGGR; fsp_size = 512 + * (via default file creation property) * H5Pset_alignment() is 3 * Outcome: - * Should fail at file creation: - * userblock (1024) is non-integral mult. of alignment (3) + * Should fail at file creation: + * userblock (1024) is non-integral mult. of alignment (3) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3221,15 +3256,15 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 3a: * Userblock size = 512 * Alignment in use = 512 - * Strategy is H5F_FILE_SPACE_PAGE; fsp_size = alignment = 512 + * Strategy is H5F_FILE_SPACE_PAGE; fsp_size = alignment = 512 * H5Pset_alignment() is 3 * Outcome: - * Should succeed: - * userblock (512) is equal to alignment (512) + * Should succeed: + * userblock (512) is equal to alignment (512) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3259,15 +3294,15 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 3b: * Userblock size = 512 * Alignment in use = 3 - * Strategy is H5F_FILE_SPACE_NONE; fsp_size = 512 + * Strategy is H5F_FILE_SPACE_NONE; fsp_size = 512 * H5Pset_alignment() is 3 * Outcome: - * Should fail at file creation: - * userblock (512) is non-integral mult. of alignment (3) + * Should fail at file creation: + * userblock (512) is non-integral mult. of alignment (3) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3297,15 +3332,15 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 4a: * Userblock size = 1024 * Alignment in use = 1023 * Strategy is H5F_FILE_SPACE_PAGE; fsp_size = alignment = 1023 * H5Pset_alignment() is 16 * Outcome: - * Should fail at file creation: - * userblock (1024) is non-integral multiple of alignment (1023) + * Should fail at file creation: + * userblock (1024) is non-integral multiple of alignment (1023) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3335,15 +3370,15 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 4b: * Userblock size = 1024 * Alignment in use = 16 * Strategy is H5F_FILE_SPACE_FSM_AGGR; fsp_size = 1023 * H5Pset_alignment() is 16 * Outcome: - * Should succeed: - * userblock (512) is integral multiple of alignment (16) + * Should succeed: + * userblock (512) is integral multiple of alignment (16) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3373,15 +3408,15 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 5a: * Userblock size = 512 * Alignment in use = 1024 * Strategy is H5F_FILE_SPACE_PAGE; fsp_size = alignment = 1024 * H5Pset_alignment() is 16 * Outcome: - * Should fail at file creation: - * userblock (512) is less than alignment (1024) + * Should fail at file creation: + * userblock (512) is less than alignment (1024) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3411,7 +3446,7 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 5b: * Userblock size = 512 * Alignment in use = 16 @@ -3419,7 +3454,7 @@ test_userblock_alignment_paged(void) * H5Pset_alignment() is 16 * Outcome: * Should succed: - * userblock (512) is integral multiple of alignment (16) + * userblock (512) is integral multiple of alignment (16) */ /* Create file creation property list with user block */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3449,16 +3484,16 @@ test_userblock_alignment_paged(void) ret = H5Pclose(fapl); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case 6: * Userblock size = 512 * Alignment in use = 512 * Strategy is H5F_FILE_SPACE_PAGE; fsp_size = alignment = 512 * H5Pset_alignment() is 3 - * Reopen the file; H5Pset_alignment() is 1024 + * Reopen the file; H5Pset_alignment() is 1024 * Outcome: * Should succed: - * Userblock (512) is the same as alignment (512); + * Userblock (512) is the same as alignment (512); * The H5Pset_alignment() calls have no effect */ /* Create file creation property list with user block */ @@ -3502,19 +3537,19 @@ test_userblock_alignment_paged(void) /**************************************************************** ** ** test_filespace_info(): -** Verify the following public routines retrieve and set file space -** information correctly: -** (1) H5Pget/set_file_space_strategy(): -** Retrieve and set file space strategy, persisting free-space, -** and free-space section threshold as specified -** (2) H5Pget/set_file_space_page_size(): -** Retrieve and set the page size for paged aggregation +** Verify the following public routines retrieve and set file space +** information correctly: +** (1) H5Pget/set_file_space_strategy(): +** Retrieve and set file space strategy, persisting free-space, +** and free-space section threshold as specified +** (2) H5Pget/set_file_space_page_size(): +** Retrieve and set the page size for paged aggregation ** ****************************************************************/ static void test_filespace_info(const char *env_h5_drvr) { - hid_t fid; /* File IDs */ + hid_t fid; /* File IDs */ hid_t fapl, new_fapl; /* File access property lists */ hid_t fcpl, fcpl1, fcpl2; /* File creation property lists */ H5F_fspace_strategy_t strategy; /* File space strategy */ @@ -3527,7 +3562,7 @@ test_filespace_info(const char *env_h5_drvr) hsize_t fsp_size; /* File space page size */ char filename[FILENAME_LEN]; /* Filename to use */ hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ - herr_t ret; /* Return value */ + herr_t ret; /* Return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing file creation public routines: H5Pget/set_file_space_strategy & H5Pget/set_file_space_page_size\n")); @@ -3545,14 +3580,14 @@ test_filespace_info(const char *env_h5_drvr) ret = H5Pset_libver_bounds(new_fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); CHECK(ret, FAIL, "H5Pset_libver_bounds"); - /* + /* * Case (1) * Check file space information from a default file creation property list. * Values expected: - * strategy--H5F_FILE_SPACE_AGGR - * persist--FALSE - * threshold--1 - * file space page size--4096 + * strategy--H5F_FILE_SPACE_AGGR + * persist--FALSE + * threshold--1 + * file space page size--4096 */ /* Create file creation property list template */ fcpl = H5Pcreate(H5P_FILE_CREATE); @@ -3575,7 +3610,7 @@ test_filespace_info(const char *env_h5_drvr) /* Close property list */ H5Pclose(fcpl); - /* + /* * Case (2) * File space page size has a minimum size of 512. * Setting value less than 512 will return an error; @@ -3624,14 +3659,14 @@ test_filespace_info(const char *env_h5_drvr) /* Close property list */ H5Pclose(fcpl); - /* + /* * Case (3) * Check file space information when creating a file with default properties. * Values expected: - * strategy--H5F_FILE_SPACE_AGGR - * persist--FALSE - * threshold--1 - * file space page size--4096 + * strategy--H5F_FILE_SPACE_AGGR + * persist--FALSE + * threshold--1 + * file space page size--4096 */ /* Create a file with default file creation and access property lists */ fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -3661,15 +3696,15 @@ test_filespace_info(const char *env_h5_drvr) ret = H5Pclose(fcpl1); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case (4) * Check file space information when creating a file with the * latest library format and default properties. * Values expected: - * strategy--H5F_FILE_SPACE_AGGR - * persist--FALSE - * threshold--1 - * file space page size--4096 + * strategy--H5F_FILE_SPACE_AGGR + * persist--FALSE + * threshold--1 + * file space page size--4096 */ /* Create a file with the latest library format */ fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, new_fapl); @@ -3699,21 +3734,21 @@ test_filespace_info(const char *env_h5_drvr) ret = H5Pclose(fcpl1); CHECK(ret, FAIL, "H5Pclose"); - /* + /* * Case (5) * Check file space information with the following combinations: - * Create file with -- - * New or old format - * Persist or not persist free-space - * Different sizes for free-space section threshold (0 to 10) - * The four file space strategies: - * H5F_FSPACE_STRATEGY_FSM_AGGR, H5F_FSPACE_STRATEGY_PAGE, + * Create file with -- + * New or old format + * Persist or not persist free-space + * Different sizes for free-space section threshold (0 to 10) + * The four file space strategies: + * H5F_FSPACE_STRATEGY_FSM_AGGR, H5F_FSPACE_STRATEGY_PAGE, * H5F_FSPACE_STRATEGY_AGGR, H5F_FSPACE_STRATEGY_NONE - * File space page size: set to 512 - * + * File space page size: set to 512 + * */ for(new_format = FALSE; new_format <= TRUE; new_format++) { - hid_t my_fapl; + hid_t my_fapl; /* Set the FAPL for the type of format */ if(new_format) { @@ -3747,7 +3782,7 @@ test_filespace_info(const char *env_h5_drvr) ret = H5Pset_file_space_page_size(fcpl, FSP_SIZE512); CHECK(ret, FAIL, "H5Pset_file_space_strategy"); - + /* Retrieve file space information */ ret = H5Pget_file_space_strategy(fcpl, &strategy, &persist, &threshold); CHECK(ret, FAIL, "H5Pget_file_space_strategy"); @@ -3906,13 +3941,13 @@ error: ** returned by the public routine H5Fget_freespace(). ** ** Modifications: -** Vailin Choi; July 2012 -** Remove datasets in reverse order so that all file spaces are shrunk. -** (A change due to H5FD_FLMAP_DICHOTOMY.) +** Vailin Choi; July 2012 +** Remove datasets in reverse order so that all file spaces are shrunk. +** (A change due to H5FD_FLMAP_DICHOTOMY.) ** -** Vailin Choi; Dec 2012 -** Add changes due to paged aggregation via new format: -** the amount of freespace is different. +** Vailin Choi; Dec 2012 +** Add changes due to paged aggregation via new format: +** the amount of freespace is different. ** *****************************************************************/ static void @@ -4052,9 +4087,9 @@ test_file_freespace(const char *env_h5_drvr) /* Check that there is the right amount of free space in the file */ free_space = H5Fget_freespace(file); CHECK(free_space, FAIL, "H5Fget_freespace"); - if(new_format) + if(new_format) VERIFY(free_space, expected_fs_del, "H5Fget_freespace"); - else + else VERIFY(free_space, expected_fs_del, "H5Fget_freespace"); /* Close file */ @@ -4078,7 +4113,7 @@ test_file_freespace(const char *env_h5_drvr) ** ** test_sects_freespace(): ** This routine checks free-space section information for the -** file as returned by the public routine H5Fget_free_sections(). +** file as returned by the public routine H5Fget_free_sections(). ** *****************************************************************/ static void @@ -4100,9 +4135,9 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) H5F_sect_info_t all_sect_info[15]; /* Array to hold free-space information for all types of data */ H5F_sect_info_t meta_sect_info[15]; /* Array to hold free-space information for metadata */ H5F_sect_info_t raw_sect_info[15]; /* Array to hold free-space information for raw data */ - hsize_t total = 0; /* sum of the free-space section sizes */ + hsize_t total = 0; /* sum of the free-space section sizes */ hsize_t tmp_tot = 0; /* Sum of the free-space section sizes */ - hsize_t last_size; /* Size of last free-space section */ + hsize_t last_size; /* Size of last free-space section */ hsize_t dims[1]; /* Dimension sizes */ unsigned u; /* Local index variable */ H5FD_mem_t type; @@ -4141,7 +4176,7 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) } else { ret = H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, TRUE, (hsize_t)1); CHECK(ret, FAIL, "H5Pget_file_space_strategy"); - } + } /* Create the file */ file = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl); @@ -4265,7 +4300,7 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) HDmemset(meta_sect_info, 0, sizeof(meta_sect_info)); if(multi_vfd) { - hssize_t ntmp; + hssize_t ntmp; for(type = H5FD_MEM_SUPER; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { if(type == H5FD_MEM_DRAW || type == H5FD_MEM_GHEAP) @@ -4317,7 +4352,7 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) CHECK(fcpl, FAIL, "H5Pclose"); h5_clean_files(FILESPACE_NAME, fapl); - } + } } /* end test_sects_freespace() */ @@ -4325,29 +4360,29 @@ test_sects_freespace(const char *env_h5_drvr, hbool_t new_format) /**************************************************************** ** ** test_filespace_compatible(): -** Verify that the trunk with the latest file space management -** can open, read and modify 1.6 HDF5 file and 1.8 HDF5 file. -** Also verify the correct file space handling information -** and the amount of free space. +** Verify that the trunk with the latest file space management +** can open, read and modify 1.6 HDF5 file and 1.8 HDF5 file. +** Also verify the correct file space handling information +** and the amount of free space. ** ****************************************************************/ static void test_filespace_compatible(void) { int fd_old = (-1), fd_new = (-1); /* File descriptors for copying data */ - hid_t fid = -1; /* File id */ - hid_t did = -1; /* Dataset id */ - hid_t fcpl; /* File creation property list template */ - int check[100]; /* Temporary buffer for verifying dataset data */ - int rdbuf[100]; /* Temporary buffer for reading in dataset data */ - uint8_t buf[READ_OLD_BUFSIZE]; /* temporary buffer for reading */ - ssize_t nread; /* Number of bytes read in */ - unsigned i, j; /* Local index variable */ - hssize_t free_space; /* Amount of free-space in the file */ - hbool_t persist; /* Persist free-space or not */ - hsize_t threshold; /* Free-space section threshold */ - H5F_fspace_strategy_t strategy; /* File space handling strategy */ - herr_t ret; /* Return value */ + hid_t fid = -1; /* File id */ + hid_t did = -1; /* Dataset id */ + hid_t fcpl; /* File creation property list template */ + int check[100]; /* Temporary buffer for verifying dataset data */ + int rdbuf[100]; /* Temporary buffer for reading in dataset data */ + uint8_t buf[READ_OLD_BUFSIZE]; /* temporary buffer for reading */ + ssize_t nread; /* Number of bytes read in */ + unsigned i, j; /* Local index variable */ + hssize_t free_space; /* Amount of free-space in the file */ + hbool_t persist; /* Persist free-space or not */ + hsize_t threshold; /* Free-space section threshold */ + H5F_fspace_strategy_t strategy; /* File space handling strategy */ + herr_t ret; /* Return value */ /* Output message about test being performed */ MESSAGE(5, ("File space compatibility testing for 1.6 and 1.8 files\n")); @@ -4356,31 +4391,31 @@ test_filespace_compatible(void) const char *filename = H5_get_srcdir_filename(OLD_FILENAME[j]); /* Corrected test file name */ /* Open and copy the test file into a temporary file */ - fd_old = HDopen(filename, O_RDONLY); - CHECK(fd_old, FAIL, "HDopen"); - fd_new = HDopen(FILE5, O_RDWR|O_CREAT|O_TRUNC, H5_POSIX_CREATE_MODE_RW); - CHECK(fd_new, FAIL, "HDopen"); + fd_old = HDopen(filename, O_RDONLY); + CHECK(fd_old, FAIL, "HDopen"); + fd_new = HDopen(FILE5, O_RDWR|O_CREAT|O_TRUNC, H5_POSIX_CREATE_MODE_RW); + CHECK(fd_new, FAIL, "HDopen"); - /* Copy data */ + /* Copy data */ while((nread = HDread(fd_old, buf, (size_t)READ_OLD_BUFSIZE)) > 0) { ssize_t write_err = HDwrite(fd_new, buf, (size_t)nread); CHECK(write_err, -1, "HDwrite"); } /* end while */ - /* Close the files */ - ret = HDclose(fd_old); - CHECK(ret, FAIL, "HDclose"); - ret = HDclose(fd_new); - CHECK(ret, FAIL, "HDclose"); + /* Close the files */ + ret = HDclose(fd_old); + CHECK(ret, FAIL, "HDclose"); + ret = HDclose(fd_new); + CHECK(ret, FAIL, "HDclose"); /* Open the temporary test file */ - fid = H5Fopen(FILE5, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid, FAIL, "H5Fopen"); + fid = H5Fopen(FILE5, H5F_ACC_RDWR, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fopen"); - /* There should not be any free space in the file */ - free_space = H5Fget_freespace(fid); - CHECK(free_space, FAIL, "H5Fget_freespace"); - VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); + /* There should not be any free space in the file */ + free_space = H5Fget_freespace(fid); + CHECK(free_space, FAIL, "H5Fget_freespace"); + VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); /* Get the file's file creation property list */ fcpl = H5Fget_create_plist(fid); @@ -4397,27 +4432,27 @@ test_filespace_compatible(void) VERIFY(persist, FALSE, "H5Pget_file_space_strategy"); VERIFY(threshold, 1, "H5Pget_file_space_strategy"); - /* Generate raw data */ - for(i = 0; i < 100; i++) - check[i] = (int)i; + /* Generate raw data */ + for(i = 0; i < 100; i++) + check[i] = (int)i; - /* Open and read the dataset */ - did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT); - CHECK(did, FAIL, "H5Dopen"); - ret = H5Dread(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdbuf); - CHECK(ret, FAIL, "H5Dread"); + /* Open and read the dataset */ + did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dopen"); + ret = H5Dread(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rdbuf); + CHECK(ret, FAIL, "H5Dread"); - /* Verify the data read is correct */ - for(i = 0; i < 100; i++) - VERIFY(rdbuf[i], check[i], "test_compatible"); + /* Verify the data read is correct */ + for(i = 0; i < 100; i++) + VERIFY(rdbuf[i], check[i], "test_compatible"); - /* Close the dataset */ - ret = H5Dclose(did); - CHECK(ret, FAIL, "H5Dclose"); + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); - /* Remove the dataset */ - ret = H5Ldelete(fid, DSETNAME, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Ldelete"); + /* Remove the dataset */ + ret = H5Ldelete(fid, DSETNAME, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); /* Close the plist */ ret = H5Pclose(fcpl); @@ -4427,30 +4462,30 @@ test_filespace_compatible(void) ret = H5Fclose(fid); CHECK(ret, FAIL, "H5Fclose"); - /* Re-Open the file */ - fid = H5Fopen(FILE5, H5F_ACC_RDONLY, H5P_DEFAULT); - CHECK(fid, FAIL, "H5Fopen"); + /* Re-Open the file */ + fid = H5Fopen(FILE5, H5F_ACC_RDONLY, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fopen"); - /* The dataset should not be there */ - did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT); - VERIFY(did, FAIL, "H5Dopen"); + /* The dataset should not be there */ + did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT); + VERIFY(did, FAIL, "H5Dopen"); - /* There should not be any free space in the file */ - free_space = H5Fget_freespace(fid); - CHECK(free_space, FAIL, "H5Fget_freespace"); - VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); + /* There should not be any free space in the file */ + free_space = H5Fget_freespace(fid); + CHECK(free_space, FAIL, "H5Fget_freespace"); + VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); - /* Close the file */ - ret = H5Fclose(fid); - CHECK(ret, FAIL, "H5Fclose"); + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); } /* end for */ } /* test_filespace_compatible */ /**************************************************************** ** ** test_filespace_1.10.0_compatible(): -** Verify that the latest file space management can open, read and -** modify 1.10.0 HDF5 files : +** Verify that the latest file space management can open, read and +** modify 1.10.0 HDF5 files : ** h5fc_ext1_i.h5: H5F_FILE_SPACE_ALL, default threshold; has superblock extension but no fsinfo message ** h5fc_ext1_f.h5: H5F_FILE_SPACE_ALL_PERSIST, default threshold; has superblock extension with fsinfo message ** h5fc_ext2_if.h5: H5F_FILE_SPACE_ALL, non-default threshold; has superblock extension with fsinfo message @@ -4464,16 +4499,16 @@ static void test_filespace_1_10_0_compatible(void) { hid_t fid = -1; /* File id */ - hid_t did = -1; /* Dataset id */ + hid_t did = -1; /* Dataset id */ hid_t fcpl; /* File creation property list */ - hbool_t persist; /* Persist free-space or not */ - hsize_t threshold; /* Free-space section threshold */ + hbool_t persist; /* Persist free-space or not */ + hsize_t threshold; /* Free-space section threshold */ H5F_fspace_strategy_t strategy; /* File space handling strategy */ - int wbuf[24]; /* Buffer for dataset data */ - int rdbuf[24]; /* Buffer for dataset data */ + int wbuf[24]; /* Buffer for dataset data */ + int rdbuf[24]; /* Buffer for dataset data */ int status; /* Status from copying the existing file */ unsigned i, j; /* Local index variable */ - herr_t ret; /* Return value */ + herr_t ret; /* Return value */ /* Output message about test being performed */ MESSAGE(5, ("File space compatibility testing for 1.10.0 files\n")); @@ -4481,7 +4516,7 @@ test_filespace_1_10_0_compatible(void) for(j = 0; j < NELMTS(OLD_1_10_0_FILENAME); j++) { /* Make a copy of the test file */ status = h5_make_local_copy(OLD_1_10_0_FILENAME[j], FILE5); - CHECK(status, FAIL, "h5_make_local_copy"); + CHECK(status, FAIL, "h5_make_local_copy"); /* Open the temporary test file */ fid = H5Fopen(FILE5, H5F_ACC_RDWR, H5P_DEFAULT); @@ -4515,7 +4550,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 1: VERIFY(strategy, H5F_FSPACE_STRATEGY_FSM_AGGR, "H5Pget_file_space_strategy"); @@ -4536,7 +4571,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 2: VERIFY(strategy, H5F_FSPACE_STRATEGY_FSM_AGGR, "H5Pget_file_space_strategy"); @@ -4557,7 +4592,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 3: VERIFY(strategy, H5F_FSPACE_STRATEGY_NONE, "H5Pget_file_space_strategy"); @@ -4578,7 +4613,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 4: VERIFY(strategy, H5F_FSPACE_STRATEGY_AGGR, "H5Pget_file_space_strategy"); @@ -4599,7 +4634,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 5: VERIFY(strategy, H5F_FSPACE_STRATEGY_FSM_AGGR, "H5Pget_file_space_strategy"); VERIFY(persist, H5F_FREE_SPACE_PERSIST_DEF, "H5Pget_file_space_strategy"); @@ -4619,10 +4654,10 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; default: - break; + break; } /* Close the plist */ @@ -4653,7 +4688,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 1: /* Open and read the dataset */ @@ -4670,7 +4705,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 2: /* Open and read the dataset */ @@ -4687,7 +4722,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 3: /* Open and read the dataset */ @@ -4704,7 +4739,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 4: @@ -4722,7 +4757,7 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; case 5: @@ -4740,10 +4775,10 @@ test_filespace_1_10_0_compatible(void) /* Close the dataset */ ret = H5Dclose(did); CHECK(ret, FAIL, "H5Dclose"); - break; + break; default: - break; + break; } /* Close the file */ @@ -4756,36 +4791,36 @@ test_filespace_1_10_0_compatible(void) /**************************************************************** ** ** test_filespace_round_compatible(): -** Verify that the trunk can open, read and modify these files-- -** 1) They are initially created (via gen_filespace.c) in the trunk -** with combinations of file space strategies, default/non-default -** threshold, and file spacing paging enabled/disbled. -** The library creates the file space info message with -** "mark if unknown" in these files. -** 2) They are copied to the 1.8 branch, and are opened/read/modified -** there via test_filespace_compatible() in test/tfile.c. -** The 1.8 library marks the file space info message as "unknown" -** in these files. -** 3) They are then copied back from the 1.8 branch to the trunk for -** compatibility testing via this routine. -** 4) Upon encountering the file space info message which is marked -** as "unknown", the library will use the default file space management -** from then on: non-persistent free-space managers, default threshold, -** and non-paging file space. +** Verify that the trunk can open, read and modify these files-- +** 1) They are initially created (via gen_filespace.c) in the trunk +** with combinations of file space strategies, default/non-default +** threshold, and file spacing paging enabled/disbled. +** The library creates the file space info message with +** "mark if unknown" in these files. +** 2) They are copied to the 1.8 branch, and are opened/read/modified +** there via test_filespace_compatible() in test/tfile.c. +** The 1.8 library marks the file space info message as "unknown" +** in these files. +** 3) They are then copied back from the 1.8 branch to the trunk for +** compatibility testing via this routine. +** 4) Upon encountering the file space info message which is marked +** as "unknown", the library will use the default file space management +** from then on: non-persistent free-space managers, default threshold, +** and non-paging file space. ** ****************************************************************/ static void test_filespace_round_compatible(void) { - hid_t fid = -1; /* File id */ - hid_t fcpl = -1; /* File creation property list ID */ - unsigned j; /* Local index variable */ - H5F_fspace_strategy_t strategy; /* File space strategy */ - hbool_t persist; /* Persist free-space or not */ - hsize_t threshold; /* Free-space section threshold */ - hssize_t free_space; /* Amount of free space in the file */ + hid_t fid = -1; /* File id */ + hid_t fcpl = -1; /* File creation property list ID */ + unsigned j; /* Local index variable */ + H5F_fspace_strategy_t strategy; /* File space strategy */ + hbool_t persist; /* Persist free-space or not */ + hsize_t threshold; /* Free-space section threshold */ + hssize_t free_space; /* Amount of free space in the file */ int status; /* Status from copying the existing file */ - herr_t ret; /* Return value */ + herr_t ret; /* Return value */ /* Output message about test being performed */ MESSAGE(5, ("File space compatibility testing for files from trunk to 1_8 to trunk\n")); @@ -4793,31 +4828,31 @@ test_filespace_round_compatible(void) for(j = 0; j < NELMTS(FSPACE_FILENAMES); j++) { /* Make a copy of the test file */ status = h5_make_local_copy(FSPACE_FILENAMES[j], FILE5); - CHECK(status, FAIL, "h5_make_local_copy"); - - /* Open the temporary test file */ - fid = H5Fopen(FILE5, H5F_ACC_RDWR, H5P_DEFAULT); - CHECK(fid, FAIL, "H5Fopen"); - - /* Get the file's creation property list */ - fcpl = H5Fget_create_plist(fid); - CHECK(fcpl, FAIL, "H5Fget_create_plist"); - - ret = H5Pget_file_space_strategy(fcpl, &strategy, &persist, &threshold); - CHECK(ret, FAIL, "H5Pget_file_space_strategy"); - VERIFY(strategy, H5F_FSPACE_STRATEGY_FSM_AGGR, "H5Pget_file_space_strategy"); - VERIFY(persist, FALSE, "H5Pget_file_space_strategy"); - VERIFY(threshold, 1, "H5Pget_file_space_strategy"); - - /* There should not be any free space in the file */ - free_space = H5Fget_freespace(fid); - CHECK(free_space, FAIL, "H5Fget_freespace"); - VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); - - /* Closing */ - ret = H5Fclose(fid); - ret = H5Pclose(fcpl); - CHECK(ret, FAIL, "H5Fclose"); + CHECK(status, FAIL, "h5_make_local_copy"); + + /* Open the temporary test file */ + fid = H5Fopen(FILE5, H5F_ACC_RDWR, H5P_DEFAULT); + CHECK(fid, FAIL, "H5Fopen"); + + /* Get the file's creation property list */ + fcpl = H5Fget_create_plist(fid); + CHECK(fcpl, FAIL, "H5Fget_create_plist"); + + ret = H5Pget_file_space_strategy(fcpl, &strategy, &persist, &threshold); + CHECK(ret, FAIL, "H5Pget_file_space_strategy"); + VERIFY(strategy, H5F_FSPACE_STRATEGY_FSM_AGGR, "H5Pget_file_space_strategy"); + VERIFY(persist, FALSE, "H5Pget_file_space_strategy"); + VERIFY(threshold, 1, "H5Pget_file_space_strategy"); + + /* There should not be any free space in the file */ + free_space = H5Fget_freespace(fid); + CHECK(free_space, FAIL, "H5Fget_freespace"); + VERIFY(free_space, (hssize_t)0, "H5Fget_freespace"); + + /* Closing */ + ret = H5Fclose(fid); + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Fclose"); } /* end for */ } /* test_filespace_round_compatible */ @@ -4883,8 +4918,8 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, CHECK(group, FAIL, "H5Gcreate"); ret = H5Oget_info(group, &oinfo); - CHECK(ret, FAIL, "H5Oget_info_by_name"); - VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info_by_name"); + CHECK(ret, FAIL, "H5Oget_info"); + VERIFY(oinfo.hdr.version, oh_vers_mod, "H5Oget_info"); ret = H5Gclose(group); CHECK(ret, FAIL, "H5Gclose"); @@ -4917,6 +4952,134 @@ test_libver_bounds_real(H5F_libver_t libver_create, unsigned oh_vers_create, CHECK(ret, FAIL, "H5Pclose"); } /* end test_libver_bounds_real() */ + +/*------------------------------------------------------------------------- + * Function: test_libver_bounds_open + * + * Purpose: Tests opening latest file with various low/high bounds. + * + * Return: Success: 0 + * Failure: number of errors + * + *------------------------------------------------------------------------- + */ +#define VERBFNAME "tverbounds_dspace.h5" +#define VERBDSNAME "dataset 1" +#define SPACE1_DIM1 3 +static int +test_libver_bounds_open(void) +{ + hid_t file = -1; /* File ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t new_fapl = -1;/* File access property list ID for reopened file */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hsize_t dim[1] = {SPACE1_DIM1}; /* Dataset dimensions */ + H5F_libver_t low, high; /* File format bounds */ + hsize_t chunk_dim[1] = {SPACE1_DIM1}; /* Chunk dimensions */ + herr_t ret; /* Generic return value */ + + /* Output message about test being performed */ + MESSAGE(5, ("Testing Opening File in Various Version Bounds\n")); + + /* Create a file access property list */ + fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(fapl, FAIL, "H5Pcreate"); + + /* Create dataspace */ + space = H5Screate_simple(1, dim, NULL); + CHECK(space, FAIL, "H5Screate_simple"); + + /* Create a dataset creation property list */ + dcpl = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl, FAIL, "H5Pcreate"); + + /* Create and set chunk plist */ + ret = H5Pset_chunk(dcpl, 1, chunk_dim); + CHECK(ret, FAIL, "H5Pset_chunk"); + ret = H5Pset_deflate(dcpl, 9); + CHECK(ret, FAIL, "H5Pset_deflate"); + ret = H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS); + CHECK(ret, FAIL, "H5Pset_chunk_opts"); + + /* Create a file with (LATEST, LATEST) bounds, create a layout version 4 + dataset, then close the file */ + + /* Set version bounds to (LATEST, LATEST) */ + low = H5F_LIBVER_LATEST; + high = H5F_LIBVER_LATEST; + ret = H5Pset_libver_bounds(fapl, low, high); + CHECK(ret, FAIL, "H5Pset_libver_bounds"); + + /* Create the file */ + file = H5Fcreate(VERBFNAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(file, FAIL, "H5Fcreate"); + + /* Create dataset */ + dset = H5Dcreate2(file, VERBDSNAME, H5T_NATIVE_INT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT); + CHECK(dset, FAIL, "H5Dcreate2"); + + /* Close dataset and file */ + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Fclose(file); + CHECK(ret, FAIL, "H5Fclose"); + + /* Attempt to open latest file with (earliest, v18), should fail */ + ret = H5Pset_libver_bounds(fapl, H5F_LIBVER_EARLIEST, H5F_LIBVER_V18); + H5E_BEGIN_TRY { + file = H5Fopen(VERBFNAME, H5F_ACC_RDONLY, fapl); + } H5E_END_TRY; + VERIFY(file, FAIL, "Attempted to open latest file with earliest version"); + + /* Attempt to open latest file with (v18, v18), should fail */ + ret = H5Pset_libver_bounds(fapl, H5F_LIBVER_V18, H5F_LIBVER_V18); + H5E_BEGIN_TRY { + file = H5Fopen(VERBFNAME, H5F_ACC_RDONLY, fapl); + } H5E_END_TRY; + VERIFY(file, FAIL, "Attempted to open latest file with v18 bounds"); + + /* Opening VERBFNAME in these combination should succeed. + For each low bound, verify that it is upgraded properly */ + high = H5F_LIBVER_LATEST; + for (low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) + { + H5F_libver_t new_low = H5F_LIBVER_EARLIEST; + + /* Set version bounds for opening file */ + ret = H5Pset_libver_bounds(fapl, low, high); + CHECK(ret, FAIL, "H5Pset_libver_bounds"); + + /* Open the file */ + file = H5Fopen(VERBFNAME, H5F_ACC_RDONLY, fapl); + CHECK(file, FAIL, "H5Fopen"); + + /* Get the new file access property */ + new_fapl = H5Fget_access_plist(file); + CHECK(new_fapl, FAIL, "H5Fget_access_plist"); + + /* Get new low bound and verify that it has been upgraded properly */ + ret = H5Pget_libver_bounds(new_fapl, &new_low, NULL); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + VERIFY(new_low, H5F_LIBVER_LATEST, "Low bound should be upgraded to H5F_LIBVER_LATEST"); + + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + ret = H5Fclose(file); + CHECK(ret, FAIL, "H5Fclose"); + } /* for low */ + + /* Close dataspace and property lists */ + ret = H5Sclose(space); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Pclose(dcpl); + CHECK(ret, FAIL, "H5Pclose"); + ret = H5Pclose(fapl); + CHECK(ret, FAIL, "H5Pclose"); +} /* end test_libver_bounds_open() */ + + /**************************************************************** ** ** test_libver_bounds(): @@ -4934,12 +5097,1724 @@ test_libver_bounds(void) /* Run the tests */ test_libver_bounds_real(H5F_LIBVER_EARLIEST, 1, H5F_LIBVER_LATEST, 2); test_libver_bounds_real(H5F_LIBVER_LATEST, 2, H5F_LIBVER_EARLIEST, 2); + test_libver_bounds_open(); } /* end test_libver_bounds() */ +/************************************************************************************** +** +** test_libver_bounds_low_high(): +** Tests to verify that format versions are correct with the following five +** pairs of low/high version bounds set in fapl via H5Pset_libver_bounds(): +** (1) (earliest, v18) +** (2) (earliest, v110) +** (3) (v18, v18) +** (4) (v18, v110) +** (5) (v110, v110) +** +** For each pair of setting in fapl, verify format versions with the following +** six tests: +** (1) test_libver_bounds_super(fapl): superblock versions +** (2) test_libver_bounds_obj(fapl): object header versions +** (3) test_libver_bounds_dataset(fapl): message versions associated with dataset +** (4) test_libver_bounds_dataspace(fapl): dataspace message versions +** (5) test_libver_bounds_datatype(fapl): datatype message versions +** (6) test_libver_bounds_attributes(fapl): attribute message versions +** +**************************************************************************************/ +static void +test_libver_bounds_low_high(void) +{ + hid_t fapl = -1; /* File access property list */ + H5F_libver_t low, high; /* Low and high bounds */ + herr_t ret; /* The return value */ + + /* Output message about test being performed */ + MESSAGE(5, ("Testing setting (low, high) format version bounds\n")); + + /* Create a file access property list */ + fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(fapl, FAIL, "H5Pcreate"); + + /* Loop through all the combinations of low/high version bounds */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + H5E_BEGIN_TRY { + /* Set the low/high version bounds */ + ret = H5Pset_libver_bounds(fapl, low, high); + } H5E_END_TRY; + + /* Should fail: invalid combinations */ + if(high == H5F_LIBVER_EARLIEST) { + VERIFY(ret, FAIL, "H5Pset_libver_bounds"); + continue; + } + + /* Should fail: invalid combinations */ + if(high < low) { + VERIFY(ret, FAIL, "H5Pset_libver_bounds"); + continue; + } + + /* All other combinations are valid and should succeed */ + VERIFY(ret, SUCCEED, "H5Pset_libver_bounds"); + + /* Tests to verify version bounds */ + test_libver_bounds_super(fapl); + test_libver_bounds_obj(fapl); + test_libver_bounds_dataset(fapl); + test_libver_bounds_dataspace(fapl); + test_libver_bounds_datatype(fapl); + test_libver_bounds_attributes(fapl); + } + + ret = H5Pclose(fapl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_low_high() */ + + +/*********************************************************************** +** +** test_libver_bounds_super(): +** Verify superblock version with the following two tests: +** (1) test_libver_bounds_super_create(): +** --when creating a file with the input fapl and the fcpl +** that has the following feature enabled: +** (A) default fcpl +** (B) fcpl with v1-btee K value enabled +** (C) fcpl with shared messages enabled +** (D) fcpl with persistent free-space manager enabled +** +** (2) test_libver_bounds_super_open(): +** --when opening a file which is created with the input fapl +** and the fcpl setting as #A to #D above. +** +** These two tests are run with or without SWMR file access. +** +*************************************************************************/ +static void +test_libver_bounds_super(hid_t fapl) +{ + hid_t fcpl = -1; /* File creation property list */ + herr_t ret; /* The return value */ + + /* Create a default fcpl: #A */ + /* This will result in superblock version 0 */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + + /* Verify superblock version when creating a file with input fapl, + fcpl #A and with/without SWMR access */ + test_libver_bounds_super_create(fapl, fcpl, TRUE); + test_libver_bounds_super_create(fapl, fcpl, FALSE); + + /* Verify superblock version when opening a file which is created + with input fapl, fcpl #A and with/without SWMR access */ + test_libver_bounds_super_open(fapl, fcpl, TRUE); + test_libver_bounds_super_open(fapl, fcpl, FALSE); + + /* Close the fcpl */ + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create a fcpl with v1-btree K value enabled: #B */ + /* This will result in superblock version 1 */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + ret = H5Pset_istore_k(fcpl, 64); + CHECK(ret, FAIL, "H5Pset_istore_k"); + + /* Verify superblock version when creating a file with input fapl, + fcpl #B and with/without SWMR access */ + test_libver_bounds_super_create(fapl, fcpl, TRUE); + test_libver_bounds_super_create(fapl, fcpl, FALSE); + + /* Verify superblock version when opening a file which is created + with input fapl, fcpl #B and with/without SWMR access */ + test_libver_bounds_super_open(fapl, fcpl, TRUE); + test_libver_bounds_super_open(fapl, fcpl, FALSE); + + /* Close the fcpl */ + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create a fcpl with shared messages enabled: #C */ + /* This will result in superblock version 2 */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + ret = H5Pset_shared_mesg_nindexes(fcpl, 1); + CHECK(ret, FAIL, "H5Pset_shared_mesg_nindexes"); + ret = H5Pset_shared_mesg_index(fcpl, 0, H5O_SHMESG_ATTR_FLAG, 2); + CHECK(ret, FAIL, "H5Pset_shared_mesg_index"); + + /* Verify superblock version when creating a file with input fapl, + fcpl #C and with/without SWMR access */ + test_libver_bounds_super_create(fapl, fcpl, TRUE); + test_libver_bounds_super_create(fapl, fcpl, FALSE); + + /* Verify superblock version when opening a file which is created + with input fapl, fcpl #C and with/without SWMR access */ + test_libver_bounds_super_open(fapl, fcpl, TRUE); + test_libver_bounds_super_open(fapl, fcpl, FALSE); + + /* Close the fcpl */ + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create a fcpl with persistent free-space manager enabled: #D */ + /* This will result in superblock version 2 */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + ret = H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, 1, (hsize_t)1); + CHECK(ret, FAIL, "H5Pset_file_space"); + + /* Verify superblock version when creating a file with input fapl, + fcpl #D and with/without SWMR access */ + test_libver_bounds_super_create(fapl, fcpl, TRUE); + test_libver_bounds_super_create(fapl, fcpl, FALSE); + + /* Verify superblock version when opening a file which is created + with input fapl, fcpl #D and with/without SWMR access */ + test_libver_bounds_super_open(fapl, fcpl, TRUE); + test_libver_bounds_super_open(fapl, fcpl, FALSE); + + /* Close the fcpl */ + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_super() */ + + +/************************************************************************************************** +** +** test_libver_bounds_super_create(): +** Verify the following when the file is created with the input fapl, fcpl, and +** with/without SWMR access: +** (a) the superblock version # +** (b) the file's low bound setting +** (c) fail or succeed in creating the file +** +** For file creation, the bounds setting in fapl, the feature enabled in fcpl, +** and with/without SWMR file access will determine the results for #a to #c. +** +** The first row for the following two tables is the 5 pairs of low/high bounds setting +** in the input fapl. The next three rows list the expected results for #a to #c. +** "-->" indicates "upgrade to" +** +** Creating a file with write access +** -------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v110) | (v18, v18) | (v18, v110) | (v110, v110) | +** |______________________________________________________________________________| +** Superblock version | vers 0, 1, 2 | vers 0, 1, 2 | vers 2 | vers 2 | vers 3 | +** |------------------------------------------------------------------------------| +** File's low bound | no change | +** |------------------------------------------------------------------------------| +** File creation | succeed | +** |______________________________________________________________________________| +** +** Creating a file with SWMR-write access +** -------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v110) | (v18, v18) | (v18, v110) | (v110, v110) | +** |______________________________________________________________________________| +** Superblock version | -- | vers 3 | -- | vers 3 | vers 3 | +** |------------------------------------------------------------------------------| +** File's low bound | -- | ->v110 | -- | ->v110 | no change | +** |------------------------------------------------------------------------------| +** File creation | fail | succeed | fail | succeed | succed | +** |______________________________________________________________________________| +** +******************************************************************************************************/ +static void +test_libver_bounds_super_create(hid_t fapl, hid_t fcpl, htri_t is_swmr) +{ + hid_t fid = -1; /* File ID */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + hbool_t ok; /* The result is ok or not */ + herr_t ret; /* The return value */ + + /* Try to create the file */ + H5E_BEGIN_TRY { + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC | (is_swmr ? H5F_ACC_SWMR_WRITE : 0), fcpl, fapl); + } H5E_END_TRY; + + /* Get the internal file pointer if the create succeeds */ + if((ok = fid >= 0)) { + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + } + + /* Retrieve the low/high bounds */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + if(is_swmr) { /* SWMR is enabled */ + + if(high == H5F_LIBVER_LATEST) { /* Should succeed */ + VERIFY(ok, TRUE, "H5Fcreate"); + VERIFY(HDF5_SUPERBLOCK_VERSION_3, f->shared->sblock->super_vers, "HDF5_superblock_ver_bounds"); + VERIFY(H5F_LIBVER_V110, f->shared->low_bound, "HDF5_superblock_ver_bounds"); + + } else /* Should fail */ + VERIFY(ok, FALSE, "H5Fcreate"); + + } else { /* Should succeed */ + VERIFY(ok, TRUE, "H5Fcreate"); + VERIFY(low, f->shared->low_bound, "HDF5_superblock_ver_bounds"); + + switch(low) { + case H5F_LIBVER_EARLIEST: + ok = (f->shared->sblock->super_vers == 0 || + f->shared->sblock->super_vers == 1 || + f->shared->sblock->super_vers == 2); + VERIFY(ok, TRUE, "HDF5_superblock_ver_bounds"); + break; + + case H5F_LIBVER_V18: + ok = (f->shared->sblock->super_vers == 2); + VERIFY(ok, TRUE, "HDF5_superblock_ver_bounds"); + break; + + case H5F_LIBVER_V110: + ok = (f->shared->sblock->super_vers == 3); + VERIFY(ok, TRUE, "HDF5_superblock_ver_bounds"); + break; + + case H5F_LIBVER_ERROR: + case H5F_LIBVER_NBOUNDS: + default: + ERROR("H5Pget_libver_bounds"); + + } /* end switch */ + } + + if(ok) { /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + } + +} /* end test_libver_bounds_super_create() */ + +/************************************************************************************************** +** +** test_libver_bounds_super_open(): +** Verify the following when opening a file which is created with the input fapl, fcpl, +** and with/without SWMR access: +** (a) the file's low bound setting +** (b) fail or succeed in opening the file +** +** (1) Create a file with the input fapl, fcpl and with/without SWMR access +** (2) Close the file +** (3) Reopen the file with a new fapl that is set to the 5 pairs of low/high bounds +** in a for loop. For each pair of setting in the new fapl: +** --Verify the expected results for #a and #b above. +** --Close the file. +** +** For file open, the file's superblock version, the low/high bounds setting in fapl, +** and with/without SWMR file access will determine the results for #a and #b. +** +** The first row for the following tables is the 5 pairs of low/high bounds setting +** in the input fapl. The next two rows list the expected results for #a and #b. +** "-->" indicates "upgrade to" +** +** Opening a file with write access +** +** Superblock version 0, 1 +** -------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v110) | (v18, v18) | (v18, v110) | (v110, v110) | +** |______________________________________________________________________________| +** File's low bound | no change | +** |------------------------------------------------------------------------------| +** File open | succeed | +** |______________________________________________________________________________| +** +** +** Superblock version 2 +** -------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v110) | (v18, v18) | (v18, v110) | (v110, v110) | +** |______________________________________________________________________________| +** File's low bound | -->v18 | no change | +** |------------------------------------------------------------------------------| +** File open | succeed | +** |______________________________________________________________________________| +** +** Superblock version 3 +** -------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v110) | (v18, v18) | (v18, v110) | (v110, v110) | +** |______________________________________________________________________________| +** File's low bound | -- | -->v110 | -- | -->v110 | no change | +** |------------------------------------------------------------------------------| +** File open | fail | succeed | fail | succeed | succeed | +** |______________________________________________________________________________| +** +** +** +** Opening a file with SWMR-write access +** +** Superblock version 0, 1, 2 +** ------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v10) | (v18, v18) | (v18, v110) | (v110, v110) | +** |_____________________________________________________________________________| +** File's low bound | ---- +** |-----------------------------------------------------------------------------| +** File open | fail +** |_____________________________________________________________________________| +** +** +** Superblock version 3 +** ------------------------------------------------------------------------------- +** | (earliest, v18) | (earliest, v10) | (v18, v18) | (v18, v110) | (v110, v110) | +** |_____________________________________________________________________________| +** File's low bound | -- | -->v110 | -- | -->v110 | no change | +** |-----------------------------------------------------------------------------| +** File open | fail | succeed | fail | succeed | succeed | +** |_____________________________________________________________________________| +** +** +******************************************************************************************************/ +static void +test_libver_bounds_super_open(hid_t fapl, hid_t fcpl, htri_t is_swmr) +{ + hid_t fid = -1; /* File ID */ + H5F_t *f = NULL; /* Internal file pointer */ + hid_t new_fapl = -1; /* File access property list */ + unsigned super_vers; /* Superblock version */ + H5F_libver_t low, high; /* Low and high bounds */ + hbool_t ok; /* The result is ok or not */ + herr_t ret; /* Return value */ + + /* Create the file with the input fcpl and fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, fcpl, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* The file's superblock version */ + super_vers = f->shared->sblock->super_vers; + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a default file access property list */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Loop through all the combinations of low/high bounds in new_fapl */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + /* Invalid combinations */ + if (ret < 0) + continue; + + /* Open the file with or without SWMR access */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR | (is_swmr ? H5F_ACC_SWMR_WRITE : 0), new_fapl); + } H5E_END_TRY; + + /* Get the internal file pointer if the open succeeds */ + if((ok = fid >= 0)) { + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + } + + /* Verify the file open succeeds or fails */ + switch(super_vers) { + case 3: + if(high == H5F_LIBVER_LATEST) { + /* Should succeed */ + VERIFY(ok, TRUE, "H5Fopen"); + VERIFY(H5F_LIBVER_V110, f->shared->low_bound, "HDF5_superblock_ver_bounds"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + } else /* Should fail */ + VERIFY(ok, FALSE, "H5Fopen"); + break; + + case 2: + if(is_swmr) /* Should fail */ + VERIFY(ok, FALSE, "H5Fopen"); + else { /* Should succeed */ + VERIFY(ok, TRUE, "H5Fopen"); + + ok = f->shared->low_bound >= H5F_LIBVER_V18; + VERIFY(ok, TRUE, "HDF5_superblock_ver_bounds"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + } + break; + + case 1: + case 0: + if(is_swmr) /* Should fail */ + VERIFY(ok, FALSE, "H5Fopen"); + else { /* Should succeed */ + VERIFY(ok, TRUE, "H5Fopen"); + VERIFY(low, f->shared->low_bound, "HDF5_superblock_ver_bounds"); + + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + } + break; + + default: + break; + } /* end switch */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_super_open() */ + +/**************************************************************** +** +** test_libver_bounds_obj(): +** Verify object header versions: +** +** (a) Create a file with: +** --the input fapl +** --a fcpl that has shared message enabled +** Verify the root group's object header version. +** Close the file. +** +** (b) Create another file with: +** --the input fapl +** --a default fcpl +** Verify the root group's object header version. +** Close the file. +** +** (c) Reopen the same file in (b) with a new fapl. +** The new fapl is set to the 5 pairs of low/high +** bounds in a "for" loop. For each setting in fapl: +** --Create a group in the file +** --Verify the group's object header version +** --Close and delete the group +** --Close the file +** +****************************************************************/ +static void +test_libver_bounds_obj(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t gid = -1; /* Group ID */ + hid_t fcpl = -1; /* File creation property list */ + hid_t new_fapl = -1; /* File access property list */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + H5O_info_t oinfo; /* Object info */ + H5G_info_t ginfo; /* Group info */ + herr_t ret; /* Return value */ + + /* Retrieve the low/high bounds from the input fapl */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + /* Create a default file creation property list */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + + /* Enable shared message in the fcpl */ + /* This will result in a version 2 object header */ + ret = H5Pset_shared_mesg_nindexes(fcpl, 1); + CHECK(ret, FAIL, "H5Pset_shared_mesg_nindexes"); + ret = H5Pset_shared_mesg_index(fcpl, 0, H5O_SHMESG_ATTR_FLAG, 2); + CHECK(ret, FAIL, "H5Pset_shared_mesg_index"); + + /* Create the file with the fcpl and the input fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, fcpl, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Get root group's object info */ + ret = H5Oget_info_by_name(fid, "/", &oinfo, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + + /* Verify object header version is 2 because shared message is enabled */ + VERIFY(oinfo.hdr.version, H5O_VERSION_2, "H5O_obj_ver_bounds"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Close the file creation property list */ + ret = H5Pclose(fcpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create a file with the default fcpl and input fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Get root group's object info */ + ret = H5Oget_info_by_name(fid, "/", &oinfo, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + + /* Verify object header version is as indicated by low_bound */ + VERIFY(oinfo.hdr.version, H5O_obj_ver_bounds[low], "H5O_obj_ver_bounds"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a new default file access property list which + is used to open the file in the "for" loop */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Loop through all the combinations of low/high bounds in new_fapl */ + /* Open the file with the fapl; create a group and verify the + object header version, then delete the group and close the file.*/ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid combinations */ + continue; + + /* Open the file */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR, new_fapl); + } H5E_END_TRY; + + if(fid >=0 ) { /* The file open succeeds */ + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* Create a group in the file */ + gid = H5Gcreate2(fid, GRP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid, FAIL, "H5Gcreate2"); + + /* Get group information */ + ret = H5Gget_info(gid, &ginfo); + CHECK(ret, FAIL, "H5Gget_info"); + + /* Verify group storage type */ + if(f->shared->low_bound >= H5F_LIBVER_V18) + /* Links in group are stored in object header */ + VERIFY(ginfo.storage_type, H5G_STORAGE_TYPE_COMPACT, "H5Gget_info"); + else + /* Links in group are stored with a "symbol table" */ + VERIFY(ginfo.storage_type, H5G_STORAGE_TYPE_SYMBOL_TABLE, "H5Gget_info"); + + /* Get object header information */ + ret = H5Oget_info_by_name(gid, GRP_NAME, &oinfo, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Oget_info_by_name"); + + /* Verify object header version as indicated by low_bound */ + VERIFY(oinfo.hdr.version, H5O_obj_ver_bounds[f->shared->low_bound], "H5O_obj_ver_bounds"); + + /* Close the group */ + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Gclose"); + + /* Delete the group */ + ret = H5Ldelete(fid, GRP_NAME, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + } /* end if */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_obj() */ + +/**************************************************************** +** +** test_libver_bounds_dataset(): +** Verify message versions associated with datasets: +** +** (a) Create a file with default fcpl and the input fapl. +** Create the following two datasets: +** --A contiguous dataset +** --A chunked dataset with "no filter edge chunks" +** For both datasets, verify the versions for the layout, +** fill value and filter pipeline messages. +** Close the file. +** +** (b) Create a new fapl that is set to the 5 pairs of low/high +** bounds in a "for" loop. For each pair of setting in the +** new fapl: +** --Open the same file in (a) with the fapl +** --Create a chunked dataset with 2 unlimited +** dimensions +** --Verify the versions for the layout, fill value +** and filter pipeline messages +** --Close and delete the dataset +** --Close the file +** +****************************************************************/ +static void +test_libver_bounds_dataset(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t new_fapl = -1; /* File access property list */ + hid_t did = -1; /* Dataset ID */ + hid_t sid = -1; /* Dataspace ID */ + hid_t dcpl = -1; /* Dataset creation property list */ + H5D_t *dset = NULL; /* Internal dataset pointer */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + herr_t ret; /* Return value */ + hsize_t fix_dims2[2] = {10, 4}; /* Dimension sizes */ + hsize_t fix_chunks2[2] = {4, 3}; /* Chunk dimension sizes */ + hsize_t dims2[2] = {1, 4}; /* Dimension sizes */ + hsize_t max_dims2[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* Maximum dimension sizes */ + hsize_t chunks2[2] = {4, 5}; /* Chunk dimension sizes */ + + /* Retrieve the low/high bounds from the input fapl */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + /* Create the file with the input fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create the dataspace */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Create a contiguous dataset */ + did = H5Dcreate2(fid, DSETA, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate"); + + /* Get the internal dataset pointer */ + dset = (H5D_t *)H5I_object(did); + CHECK(dset, NULL, "H5I_object"); + + /* Verify version for layout and fill value messages */ + if(low == H5F_LIBVER_EARLIEST) { + /* For layout message: the earliest version the library will set is 3 */ + /* For fill value message: the earliest version the library will set is 2 */ + VERIFY(dset->shared->layout.version, H5O_LAYOUT_VERSION_DEFAULT, "H5O_layout_ver_bounds"); + VERIFY(dset->shared->dcpl_cache.fill.version, H5O_FILL_VERSION_2, "H5O_fill_ver_bounds"); + } else { + VERIFY(dset->shared->layout.version, H5O_layout_ver_bounds[low], "H5O_layout_ver_bounds"); + VERIFY(dset->shared->dcpl_cache.fill.version, H5O_fill_ver_bounds[low], "H5O_fill_ver_bounds"); + } + + /* Verify filter pipleline message version */ + VERIFY(dset->shared->dcpl_cache.pline.version, H5O_pline_ver_bounds[low], "H5O_pline_ver_bounds"); + + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Set up dataspace and dcpl for creating a chunked dataset + with "no filter edge chunks" enabled. + This will result in a version 4 layout message */ + sid = H5Screate_simple(2, fix_dims2, NULL); + CHECK(sid, FAIL, "H5Screate_simple"); + dcpl = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl, FAIL, "H5Pcreate"); + ret = H5Pset_chunk(dcpl, 2, fix_chunks2); + CHECK(ret, FAIL, "H5Pset_chunk"); + ret = H5Pset_chunk_opts(dcpl, H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS); + CHECK(ret, FAIL, "H5Pset_chunk_opts"); + + /* Create the chunked dataset */ + H5E_BEGIN_TRY { + did = H5Dcreate2(fid, DSETB, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); + } H5E_END_TRY; + + if(did >= 0) { + + /* Get the internal dataset pointer */ + dset = (H5D_t *)H5I_object(did); + CHECK(dset, NULL, "H5I_object"); + + /* Verify layout message version and chunk indexing type */ + VERIFY(dset->shared->layout.version, H5O_LAYOUT_VERSION_4, "H5O_layout_ver_bounds"); + VERIFY(dset->shared->layout.u.chunk.idx_type, H5D_CHUNK_IDX_FARRAY, "chunk_index_type"); + + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + } + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the datset creation property list */ + ret = H5Pclose(dcpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create a default file access property list which is used + to open the file in the 'for' loop */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Set up dataspace and dcpl for creating a chunked dataset with + 2 unlimited dimensions in the 'for' loop */ + sid = H5Screate_simple(2, dims2, max_dims2); + CHECK(sid, FAIL, "H5Screate_simple"); + dcpl = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl, FAIL, "H5Pcreate"); + ret = H5Pset_chunk(dcpl, 2, chunks2); + CHECK(ret, FAIL, "H5Pset_chunk"); + + /* Loop through all the combinations of low/high bounds in new_fapl */ + /* Open the file with the fapl and create the chunked dataset */ + /* Verify the dataset's layout, fill value and filter pipleline message versions */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Open the file */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR, new_fapl); + } H5E_END_TRY; + + if(fid >=0 ) { /* The file open succeeds */ + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* Create the chunked dataset */ + did = H5Dcreate2(fid, DSETC, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate2"); + + /* Get the internal file pointer */ + dset = (H5D_t *)H5I_object(did); + CHECK(dset, NULL, "H5I_object"); + + /* Verify the dataset's layout, fill value and filter pipeline message versions */ + /* Also verify the chunk indexing type */ + if(f->shared->low_bound == H5F_LIBVER_EARLIEST) { + /* For layout message: the earliest version the library will set is 3 */ + /* For fill value message: the earliest version the library will set is 2 */ + VERIFY(dset->shared->layout.version, H5O_LAYOUT_VERSION_DEFAULT, "H5O_layout_ver_bounds"); + VERIFY(dset->shared->dcpl_cache.fill.version, H5O_FILL_VERSION_2, "H5O_fill_ver_bounds"); + } else { + VERIFY(dset->shared->layout.version, H5O_layout_ver_bounds[f->shared->low_bound], "H5O_layout_ver_bounds"); + VERIFY(dset->shared->dcpl_cache.fill.version, H5O_fill_ver_bounds[f->shared->low_bound], "H5O_fill_ver_bounds"); + } + + /* Verify the filter pipeline message version */ + VERIFY(dset->shared->dcpl_cache.pline.version, H5O_pline_ver_bounds[f->shared->low_bound], "H5O_pline_ver_bounds"); + + /* Verify the dataset's chunk indexing type */ + if(dset->shared->layout.version == H5O_LAYOUT_VERSION_LATEST) + VERIFY(dset->shared->layout.u.chunk.idx_type, H5D_CHUNK_IDX_BT2, "chunk_index_type"); + else + VERIFY(dset->shared->layout.u.chunk.idx_type, H5D_CHUNK_IDX_BTREE, "chunk_index_type"); + + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + + /* Delete the dataset */ + ret = H5Ldelete(fid, DSETC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + } /* end if */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the dataset creation property list */ + ret = H5Pclose(dcpl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_dataset() */ + +/**************************************************************** +** +** test_libver_bounds_dataspace(): +** Verify dataspace message versions: +** +** (a) Create a file with default fcpl and the input fapl. +** Create the following two datasets: +** --A dataset with scalar dataspace +** --A dataset with null dataspace +** For both datasets, verify the dataspace message versions. +** Close the file. +** +** (b) Create a new fapl that is set to the 5 pairs of low/high +** bounds in a "for" loop. For each pair of setting in the +** new fapl: +** --Open the same file in (a) with the fapl +** --Create a chunked dataset, a compact dataset and +** a contigous dataset +** --Verify the dataspace message version for these +** three datasets +** --Delete the three datasets and the dataspaces +** --Close the file +** +****************************************************************/ +static void +test_libver_bounds_dataspace(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t new_fapl = -1; /* File access property list */ + hid_t did = -1, did_null = -1; /* Dataset IDs */ + hid_t did_compact = -1, did_contig = -1; /* Dataset IDs */ + hid_t sid = -1, sid_null = -1; /* Dataspace IDs */ + hid_t sid_compact = -1, sid_contig = -1; /* Dataspace IDs */ + hid_t dcpl = -1; /* Dataset creation property list */ + hid_t dcpl_compact = -1, dcpl_contig = -1; /* Dataset creation property lists */ + H5S_t *space = NULL, *space_null = NULL; /* Internal dataspace pointers */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + hsize_t dims[1] = {1}; /* Dimension sizes */ + hsize_t dims2[2] = {5, 4}; /* Dimension sizes */ + hsize_t max_dims[1] = {H5S_UNLIMITED}; /* Maximum dimension sizes */ + hsize_t chunks[1] = {4}; /* Chunk dimension sizes */ + herr_t ret; /* Return value */ + + /* Retrieve the low/high bounds from the input fapl */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + /* Create the file with the input fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create scalar dataspace */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Create a dataset with the scalar dataspace */ + did = H5Dcreate2(fid, DSET, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate"); + + /* Get the internal dataspace pointer */ + sid = H5Dget_space(did); + CHECK(sid, FAIL, "H5Dget_space"); + space = (H5S_t *)H5I_object(sid); + CHECK(space, NULL, "H5I_object"); + + /* Verify the dataspace version */ + VERIFY(space->extent.version, H5O_sdspace_ver_bounds[low], "H5O_sdspace_ver_bounds"); + + /* Create null dataspace */ + sid_null = H5Screate(H5S_NULL); + CHECK(sid_null, FAIL, "H5Screate"); + + /* Create a dataset with the null dataspace */ + did_null = H5Dcreate2(fid, DSET_NULL, H5T_NATIVE_INT, sid_null, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(did_null, FAIL, "H5Dcreate"); + + /* Get the internal dataspace pointer */ + sid_null = H5Dget_space(did_null); + CHECK(sid_null, FAIL, "H5Dget_space"); + space_null = (H5S_t *)H5I_object(sid_null); + CHECK(space_null, NULL, "H5I_object"); + + /* Verify the dataspace version */ + VERIFY(space_null->extent.version, H5O_SDSPACE_VERSION_2, "H5O_sdspace_ver_bounds"); + + /* Close the datasets */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Dclose(did_null); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the dataspaces */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(sid_null); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a default file access property list which is used + to open the file in the 'for' loop */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Set up dataspace and dcpl for creating a chunked dataset */ + sid = H5Screate_simple(1, dims, max_dims); + CHECK(sid, FAIL, "H5Screate_simple"); + dcpl = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl, FAIL, "H5Pcreate"); + ret = H5Pset_chunk(dcpl, 1, chunks); + CHECK(ret, FAIL, "H5Pset_chunk"); + + /* Set up dataspace and dcpl for creating a compact dataset */ + sid_compact = H5Screate_simple(1, dims, NULL); + CHECK(sid_compact, FAIL, "H5Screate_simple"); + dcpl_compact = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl_compact, FAIL, "H5Pcreate"); + ret = H5Pset_layout(dcpl_compact, H5D_COMPACT); + CHECK(ret, FAIL, "H5Pset_layout"); + + /* Set up dataspace and dcpl for creating a contiguous dataset */ + sid_contig = H5Screate_simple(2, dims2, NULL); + CHECK(sid_contig, FAIL, "H5Screate_simple"); + dcpl_contig = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl_contig, FAIL, "H5Pcreate"); + ret = H5Pset_layout(dcpl_contig, H5D_CONTIGUOUS); + CHECK(ret, FAIL, "H5Pset_layout"); + + /* Loop through all the combinations of low/high bounds in new_fapl */ + /* Open the file and create the chunked/compact/contiguous datasets */ + /* Verify the dataspace message version for the three datasets */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + hid_t tmp_sid, tmp_sid_compact, tmp_sid_contig; /* Dataspace IDs */ + H5S_t *tmp_space, *tmp_space_compact, *tmp_space_contig; /* Internal dataspace pointers */ + + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Open the file */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR, new_fapl); + } H5E_END_TRY; + + if(fid >=0 ) { /* The file open succeeds */ + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* Create the chunked dataset */ + did = H5Dcreate2(fid, DSETA, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate2"); + + /* Get the internal dataspace pointer for the chunked dataset */ + tmp_sid = H5Dget_space(did); + CHECK(tmp_sid, FAIL, "H5Dget_space"); + tmp_space = (H5S_t *)H5I_object(tmp_sid); + CHECK(tmp_space, NULL, "H5I_object"); + + /* Create the compact dataset */ + did_compact = H5Dcreate2(fid, DSETB, H5T_NATIVE_INT, sid_compact, H5P_DEFAULT, dcpl_compact, H5P_DEFAULT); + CHECK(did_compact, FAIL, "H5Dcreate2"); + + /* Get the internal dataspace pointer for the compact dataset */ + tmp_sid_compact = H5Dget_space(did_compact); + CHECK(tmp_sid_compact, FAIL, "H5Dget_space"); + tmp_space_compact = (H5S_t *)H5I_object(tmp_sid_compact); + CHECK(tmp_space_compact, NULL, "H5I_object"); + + /* Create the contiguous dataset */ + did_contig = H5Dcreate2(fid, DSETC, H5T_NATIVE_INT, sid_contig, H5P_DEFAULT, dcpl_contig, H5P_DEFAULT); + CHECK(did_contig, FAIL, "H5Dcreate2"); + + /* Get the internal dataspace pointer for the contiguous dataset */ + tmp_sid_contig = H5Dget_space(did_contig); + CHECK(tmp_sid_contig, FAIL, "H5Dget_space"); + tmp_space_contig = (H5S_t *)H5I_object(tmp_sid_contig); + CHECK(tmp_space_contig, NULL, "H5I_object"); + + /* Verify versions for the three dataspaces */ + VERIFY(tmp_space->extent.version, H5O_sdspace_ver_bounds[f->shared->low_bound], "H5O_sdspace_ver_bounds"); + VERIFY(tmp_space_compact->extent.version, H5O_sdspace_ver_bounds[f->shared->low_bound], "H5O_sdspace_ver_bounds"); + VERIFY(tmp_space_contig->extent.version, H5O_sdspace_ver_bounds[f->shared->low_bound], "H5O_sdspace_ver_bounds"); + + /* Close the three datasets */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Dclose(did_compact); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Dclose(did_contig); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the three dataspaces */ + ret = H5Sclose(tmp_sid); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(tmp_sid_compact); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(tmp_sid_contig); + CHECK(ret, FAIL, "H5Sclose"); + + /* Delete the three datasets */ + ret = H5Ldelete(fid, DSETA, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + ret = H5Ldelete(fid, DSETB, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + ret = H5Ldelete(fid, DSETC, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + } /* end if */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close the three dataspaces */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(sid_compact); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Sclose(sid_contig); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the three dataset creation property lists */ + ret = H5Pclose(dcpl); + CHECK(ret, FAIL, "H5Pclose"); + ret = H5Pclose(dcpl_compact); + CHECK(ret, FAIL, "H5Pclose"); + ret = H5Pclose(dcpl_contig); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_dataspace() */ + + +/**************************************************************** +** +** test_libver_bounds_datatype(): +** Verify the datatype message version: +** +** (a) Create the following datatypes: +** 1) integer +** 2) enum +** 3) array +** 4) compound +** 5) vlen +** (b) Call test_libver_bounds_datatype_check() for each +** datatype in (a) to verify the datatype message version. +** +****************************************************************/ +static void +test_libver_bounds_datatype(hid_t fapl) +{ + hid_t tid = -1, tid_enum = -1, tid_array = -1; /* Datatype IDs */ + hid_t tid_compound = -1, tid_vlen = -1; /* Datatype IDs */ + int enum_value; /* Value for enum datatype */ + typedef struct s1 { /* Data structure for compound datatype */ + char c; + int i; + } s1; + hsize_t dims[1] = {1}; /* Dimension sizes */ + herr_t ret; /* Return value */ + + /* Create integer datatype */ + tid = H5Tcopy(H5T_NATIVE_INT); + + /* Verify datatype message version */ + test_libver_bounds_datatype_check(fapl, tid); + + /* Create enum datatype */ + tid_enum = H5Tenum_create(tid); + enum_value = 0; + H5Tenum_insert(tid_enum, "val1", &enum_value); + enum_value = 1; + H5Tenum_insert(tid_enum, "val2", &enum_value); + + /* Verify datatype message version */ + test_libver_bounds_datatype_check(fapl, tid_enum); + + /* Create array datatype */ + tid_array = H5Tarray_create2(tid, 1, dims); + + /* Verify datatype message version */ + test_libver_bounds_datatype_check(fapl, tid_array); + + /* Create compound datatype */ + tid_compound = H5Tcreate(H5T_COMPOUND, sizeof(s1)); + H5Tinsert(tid_compound, "c", HOFFSET(s1, c), H5T_STD_U8LE); + H5Tinsert(tid_compound, "i", HOFFSET(s1, i), H5T_NATIVE_INT); + + /* Verify datatype message version */ + test_libver_bounds_datatype_check(fapl, tid_compound); + + /* Create vlen datatype */ + tid_vlen = H5Tvlen_create(tid); + + /* Verify datatype message version */ + test_libver_bounds_datatype_check(fapl, tid_vlen); + + /* Close the datatypes */ + ret = H5Tclose(tid); + CHECK(ret, FAIL, "H5Tclose"); + + ret = H5Tclose(tid_enum); + CHECK(ret, FAIL, "H5Tclose"); + + ret = H5Tclose(tid_array); + CHECK(ret, FAIL, "H5Tclose"); + + ret = H5Tclose(tid_compound); + CHECK(ret, FAIL, "H5Tclose"); + + ret = H5Tclose(tid_vlen); + CHECK(ret, FAIL, "H5Tclose"); + +} /* end test_libver_bounds_datatype() */ + +/**************************************************************** +** +** test_libver_bounds_datatype_check(): +** Helper routine called by test_libver_bounds_datatype() +** to verify the datatype message version for the input tid: +** +** (a) Create a file with default fcpl and the input fapl. +** Create a contiguous dataset with the input tid. +** Verify the datatype message version. +** Create a committed datatype of string to be +** used later. +** Close the file. +** +** (b) Create a new fapl that is set to the 5 pairs of low/high +** bounds in a "for" loop. For each pair of setting in +** the new fapl: +** --Open the same file in (a) with the fapl +** --Verify the message version for the committed +** datatype created earlier +** --Create a chunked dataset with the input tid +** --Verify the datatype message version +** --Close and delete the dataset +** --Close the file +** +****************************************************************/ +static void +test_libver_bounds_datatype_check(hid_t fapl, hid_t tid) +{ + hid_t fid = -1; /* File ID */ + hid_t new_fapl = -1; /* File acess property list */ + hid_t dcpl = -1; /* Dataset creation property list */ + hid_t dtid = -1; /* Datatype ID for the dataset */ + hid_t str_tid = -1; /* String datatype ID */ + hid_t did = -1; /* Dataset ID */ + hid_t sid = -1; /* Dataspace ID */ + hsize_t dims[1] = {1}; /* Dimension sizes */ + hsize_t dims2[2] = {5, 4}; /* Dimension sizes */ + hsize_t max_dims2[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; /* Maximum dimension sizes */ + hsize_t chunks[2] = {2, 3}; /* Chunk dimension sizes */ + H5T_t *dtype = NULL; /* Internal datatype pointer */ + H5T_t *str_dtype = NULL; /* Internal datatype pointer for the string datatype */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + herr_t ret; /* Return value */ + + /* Retrieve the low/high version bounds from the input fapl */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + /* Create the file with the input fapl */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create a committed datatype of string which will be used + later inside the 'for' loop */ + str_tid = H5Tcopy(H5T_C_S1); + CHECK(str_tid, FAIL, "H5Tcopy"); + ret = H5Tset_size(str_tid, (size_t)10); + CHECK(ret, FAIL, "H5Tset_size"); + ret = H5Tcommit2(fid, "datatype", str_tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + ret = H5Tclose(str_tid); + CHECK(ret, FAIL, "H5Tclose"); + + /* Create dataspace */ + sid = H5Screate_simple(1, dims, NULL); + CHECK(sid, FAIL, "H5Screate_simple"); + + /* Create a dataset with the input tid */ + did = H5Dcreate2(fid, DSET1, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate2"); + + /* Get the dataset's datatype */ + dtid = H5Dget_type(did); + CHECK(dtid, FAIL, "H5Dget_type"); + + /* Get the internal datatype pointer */ + dtype = (H5T_t *)H5I_object(dtid); + CHECK(dtype, NULL, "H5I_object"); + + /* Verify the datatype message version */ + /* H5T_COMPOUND, H5T_ENUM, H5T_ARRAY: + * --the library will set version according to low_bound + * --H5T_ARRAY: the earliest version the library will set is 2 + * H5T_INTEGER, H5T_FLOAT, H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_REFERENCE: + * --the library will only use basic version + */ + + if(dtype->shared->type == H5T_COMPOUND || + dtype->shared->type == H5T_ENUM || + dtype->shared->type == H5T_ARRAY) { + if(dtype->shared->type == H5T_ARRAY && low == H5F_LIBVER_EARLIEST) + VERIFY(dtype->shared->version, H5O_DTYPE_VERSION_2, "H5O_dtype_ver_bounds"); + else + VERIFY(dtype->shared->version, H5O_dtype_ver_bounds[low], "H5O_dtype_ver_bounds"); + } else + VERIFY(dtype->shared->version, H5O_dtype_ver_bounds[H5F_LIBVER_EARLIEST], "H5O_dtype_ver_bounds"); + + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the datatype */ + ret = H5Tclose(dtid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a default file access property list */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Set up dataspace and dcpl for creating a chunked dataset */ + sid = H5Screate_simple(2, dims2, max_dims2); + CHECK(sid, FAIL, "H5Screate_simple"); + dcpl = H5Pcreate(H5P_DATASET_CREATE); + CHECK(dcpl, FAIL, "H5Pcreate"); + ret = H5Pset_chunk(dcpl, 2, chunks); + CHECK(ret, FAIL, "H5Pset_chunk"); + + /* Loop through all the combinations of low/high bounds */ + /* Open the file and create the chunked dataset with the input tid */ + /* Verify the dataset's datatype message version */ + /* Also verify the committed atatype message version */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Open the file */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR, new_fapl); + } H5E_END_TRY; + + if(fid >= 0 ) { /* The file open succeeds */ + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* Open the committed datatype */ + str_tid = H5Topen2(fid, "datatype", H5P_DEFAULT); + CHECK(str_tid, FAIL, "H5Topen2"); + str_dtype = (H5T_t *)H5I_object(str_tid); + CHECK(str_dtype, NULL, "H5I_object"); + + /* Verify the committed datatype message version */ + VERIFY(str_dtype->shared->version, H5O_dtype_ver_bounds[H5F_LIBVER_EARLIEST], "H5O_dtype_ver_bounds"); + + /* Close the committed datatype */ + ret = H5Tclose(str_tid); + CHECK(ret, FAIL, "H5Tclose"); + + + /* Create the chunked dataset */ + did = H5Dcreate2(fid, DSETNAME, tid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); + CHECK(did, FAIL, "H5Dcreate2"); + + /* Get the dataset's datatype */ + dtid = H5Dget_type(did); + CHECK(dtid, FAIL, "H5Dget_type"); + + /* Get the internal datatype pointer */ + dtype = (H5T_t *)H5I_object(dtid); + CHECK(dtype, NULL, "H5I_object"); + + /* Verify the dataset's datatype message version */ + /* H5T_COMPOUND, H5T_ENUM, H5T_ARRAY: + * --the library will set version according to low_bound + * --H5T_ARRAY: the earliest version the library will set is 2 + * H5T_INTEGER, H5T_FLOAT, H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_REFERENCE: + * --the library will only use basic version + */ + if(dtype->shared->type == H5T_COMPOUND || + dtype->shared->type == H5T_ENUM || + dtype->shared->type == H5T_ARRAY) { + if(dtype->shared->type == H5T_ARRAY && + f->shared->low_bound == H5F_LIBVER_EARLIEST) + VERIFY(dtype->shared->version, H5O_DTYPE_VERSION_2, "H5O_dtype_ver_bounds"); + else + VERIFY(dtype->shared->version, H5O_dtype_ver_bounds[f->shared->low_bound], "H5O_dtype_ver_bounds"); + } else + VERIFY(dtype->shared->version, H5O_dtype_ver_bounds[H5F_LIBVER_EARLIEST], "H5O_dtype_ver_bounds"); + + /* Close the dataset */ + ret = H5Dclose(did); + CHECK(ret, FAIL, "H5Dclose"); + + /* Close the dataset's datatype */ + ret = H5Tclose(dtid); + CHECK(ret, FAIL, "H5Tclose"); + + /* Delete the dataset */ + ret = H5Ldelete(fid, DSETNAME, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Ldelete"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + } /* end if */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the dataset creation property list */ + ret = H5Pclose(dcpl); + CHECK(ret, FAIL, "H5Pclose"); + +} /* end test_libver_bounds_datatype_check() */ + +/**************************************************************** +** +** test_libver_bounds_attributes(): +** Verify the attribute message versions: +** +** (a) Create a file with default fcpl and the input fapl. +** Create a group and attach the following three attributes +** to the group: +** (1) Attribute with a committed datatype +** (2) Attribute with integer type +** (3) Attribute with character encoding set +** Verify the three attributes' message versions. +** Close the file. +** +** (b) Create a fcpl that has shared datatype message enabled. +** Create a file with the fcpl and the input fapl. +** Create a group and attach an attribute with shared +** integer type to the group. +** Verify the attribute message version. +** Close the file +** +** (b) Create a new fapl that is set to the 5 pairs of low/high +** bounds in a "for" loop. For each pair of setting in +** the new fapl: +** --Open the same file in (b) with the fapl +** --Open the group and attach an attribute with integer +** type to the group +** --Verify the attribute message version +** --Delete the attribute +** --Close the group and the file +** +****************************************************************/ +static void +test_libver_bounds_attributes(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t fcpl = -1; /* File creation property list */ + hid_t new_fapl = -1; /* File access property list */ + hid_t tid = -1; /* Datatype ID */ + hid_t gid = -1; /* Group ID */ + hid_t sid = -1; /* Dataspace ID */ + hid_t aid = -1; /* Attribute ID */ + hid_t attr_cpl = -1; /* Attribute creation property list */ + H5A_t *attr = NULL; /* Internal attribute pointer */ + H5F_t *f = NULL; /* Internal file pointer */ + H5F_libver_t low, high; /* Low and high bounds */ + herr_t ret; /* Return value */ + + /* Retrieve the low/high bounds from the input fapl */ + ret = H5Pget_libver_bounds(fapl, &low, &high); + CHECK(ret, FAIL, "H5Pget_libver_bounds"); + + /* Create the file */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Integer datatpye */ + tid = H5Tcopy(H5T_NATIVE_INT); + CHECK(tid, FAIL, "H5Tcopy"); + + /* Create a committed datatype */ + ret = H5Tcommit2(fid, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit2"); + + /* Create dataspace */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Create a group */ + gid = H5Gcreate2(fid, GRP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid, FAIL, "H5Gcreate2"); + + /* Attach an attribute to the group with the committed datatype */ + aid = H5Acreate2(gid, "attr1", tid, sid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + + /* Get the internal attribute pointer */ + attr = (H5A_t *)H5I_object(aid); + CHECK(attr, NULL, "H5I_object"); + + /* Verify the attribute version */ + if(low == H5F_LIBVER_EARLIEST) + /* The earliest version the library can set for an attribute with committed datatype is 2 */ + VERIFY(attr->shared->version, H5O_ATTR_VERSION_2, "H5O_attr_ver_bounds"); + else + VERIFY(attr->shared->version, H5O_attr_ver_bounds[low], "H5O_attr_ver_bounds"); + + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + /* Create an attribute to the group with integer type */ + aid = H5Acreate2(gid, "attr2", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + + /* Get the internal attribute pointer */ + attr = (H5A_t *)H5I_object(aid); + CHECK(attr, NULL, "H5I_object"); + + /* Verify attribute version */ + VERIFY(attr->shared->version, H5O_attr_ver_bounds[low], "H5O_attr_ver_bounds"); + + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + /* Enable character encoding in attribute creation property list */ + attr_cpl = H5Pcreate(H5P_ATTRIBUTE_CREATE); + CHECK(attr_cpl, FAIL, "H5Pcreate"); + ret = H5Pset_char_encoding(attr_cpl, H5T_CSET_UTF8); + CHECK(ret, FAIL, "H5Pset_char_encoding"); + + /* Attach an attribute to the group with character encoding set */ + aid = H5Acreate2(gid, "attr3", H5T_NATIVE_INT, sid, attr_cpl, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + + /* Get internal attribute pointer */ + attr = (H5A_t *)H5I_object(aid); + CHECK(attr, NULL, "H5I_object"); + + /* Verify attribute version */ + if(low == H5F_LIBVER_EARLIEST) + /* The earliest version the library can set for an attribute with character encoding is 3 */ + VERIFY(attr->shared->version, H5O_ATTR_VERSION_3, "H5O_attr_ver_bounds"); + else + VERIFY(attr->shared->version, H5O_attr_ver_bounds[low], "H5O_attr_ver_bounds"); + + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + /* Close the attribute creation property list */ + ret = H5Pclose(attr_cpl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close the group */ + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Gclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the datatype */ + ret = H5Tclose(tid); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a copy of the file creation property list */ + fcpl = H5Pcreate(H5P_FILE_CREATE); + CHECK(fcpl, FAIL, "H5Pcreate"); + + /* Enable shared datatype message */ + ret = H5Pset_shared_mesg_nindexes(fcpl, 1); + CHECK(ret, FAIL, "H5Pset_shared_mesg_nindexes"); + ret = H5Pset_shared_mesg_index(fcpl, 0, H5O_SHMESG_DTYPE_FLAG, 2); + CHECK(ret, FAIL, "H5Pset_shared_mesg_index"); + + /* Create the file with shared datatype message enabled */ + fid = H5Fcreate(FILE8, H5F_ACC_TRUNC, fcpl, fapl); + CHECK(fid, FAIL, "H5Fcreate"); + + /* Create an integer datatye */ + tid = H5Tcopy(H5T_NATIVE_INT); + CHECK(tid, FAIL, "H5Tcopy"); + + /* Create dataspace */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Create a group */ + gid = H5Gcreate2(fid, GRP_NAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(gid, FAIL, "H5Gcreate2"); + + /* Attach an attribute to the group with shared integer datatype */ + aid = H5Acreate2(gid, ATTR_NAME, tid, sid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + + /* Get the internal attribute pointer */ + attr = (H5A_t *)H5I_object(aid); + CHECK(attr, NULL, "H5I_object"); + + /* Verify the attribute version */ + if(low == H5F_LIBVER_EARLIEST) + /* The earliest version the library can set for an attribute with shared datatype is 2 */ + VERIFY(attr->shared->version, H5O_ATTR_VERSION_2, "H5O_attr_ver_bounds"); + else + VERIFY(attr->shared->version, H5O_attr_ver_bounds[low], "H5O_attr_ver_bounds"); + + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + /* Close the group */ + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Gclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + + /* Close the datatype */ + ret = H5Tclose(tid); + CHECK(ret, FAIL, "H5Tclose"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + /* Create a default file access property list */ + new_fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(new_fapl, FAIL, "H5Pcreate"); + + /* Create a scalar dataspace to be used later for the attribute */ + sid = H5Screate(H5S_SCALAR); + CHECK(sid, FAIL, "H5Screate"); + + /* Loop through all the combinations of low/high bounds */ + /* Open the file and group and attach an attribute to the group */ + /* Verify the attribute version */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(new_fapl, low, high); + } H5E_END_TRY; + + if(ret < 0) /* Invalid low/high combinations */ + continue; + + /* Open the file */ + H5E_BEGIN_TRY { + fid = H5Fopen(FILE8, H5F_ACC_RDWR, new_fapl); + } H5E_END_TRY; + + if(fid >=0 ) { /* The file open succeeds */ + + /* Get the internal file pointer */ + f = (H5F_t *)H5I_object(fid); + CHECK(f, NULL, "H5I_object"); + + /* Open the group */ + gid = H5Gopen2(fid, GRP_NAME, H5P_DEFAULT); + CHECK(gid, FAIL, "H5Gopen2"); + + /* Attach an attribute to the group */ + aid = H5Acreate2(gid, "attr1", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT); + CHECK(aid, FAIL, "H5Acreate2"); + + /* Get the internal attribute pointer */ + attr = (H5A_t *)H5I_object(aid); + CHECK(attr, NULL, "H5I_object"); + + /* Verify the attribute message version */ + VERIFY(attr->shared->version, H5O_attr_ver_bounds[f->shared->low_bound], "H5O_attr_ver_bounds"); + + /* Close the attribute */ + ret = H5Aclose(aid); + CHECK(ret, FAIL, "H5Aclose"); + + /* Delete the attribute */ + ret = H5Adelete(gid, "attr1"); + CHECK(ret, FAIL, "H5Adelete"); + + /* Close the group */ + ret = H5Gclose(gid); + CHECK(ret, FAIL, "H5Gclose"); + + /* Close the file */ + ret = H5Fclose(fid); + CHECK(ret, FAIL, "H5Fclose"); + + } /* end if */ + } /* end for */ + } /* end for */ + + /* Close the file access property list */ + ret = H5Pclose(new_fapl); + CHECK(ret, FAIL, "H5Pclose"); + + /* Close the dataspace */ + ret = H5Sclose(sid); + CHECK(ret, FAIL, "H5Sclose"); + +} /* end test_libver_bounds_attributes() */ + /**************************************************************** ** ** test_libver_macros(): -** Verify that H5_VERSION_GE and H5_VERSION_LE work correactly. +** Verify that H5_VERSION_GE and H5_VERSION_LE work correactly. ** ****************************************************************/ static void @@ -4988,7 +6863,7 @@ test_libver_macros(void) /**************************************************************** ** ** test_libver_macros2(): -** Verify that H5_VERSION_GE works correactly and show how +** Verify that H5_VERSION_GE works correactly and show how ** to use it. ** ****************************************************************/ @@ -5021,9 +6896,9 @@ test_libver_macros2(void) ret = H5Gclose(grp); CHECK(ret, FAIL, "H5Gclose"); - /* + /* * Delete the group using different function based on the library version. - * And verify the action. + * And verify the action. */ #if H5_VERSION_GE(1,8,0) ret = H5Ldelete(file, "Group", H5P_DEFAULT); @@ -5052,7 +6927,7 @@ test_libver_macros2(void) /**************************************************************** ** ** test_deprec(): -** Test deprecated functionality. +** Test deprecated functionality. ** ****************************************************************/ #ifndef H5_NO_DEPRECATED_SYMBOLS @@ -5068,7 +6943,7 @@ test_deprec(void) unsigned freelist; /* Free list version # */ unsigned stab; /* Symbol table entry version # */ unsigned shhdr; /* Shared object header version # */ - H5F_info1_t finfo; /* global information about file */ + H5F_info1_t finfo; /* global information about file */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -5284,7 +7159,7 @@ test_deprec(void) void test_file(void) { - const char *env_h5_drvr; /* File Driver value from environment */ + const char *env_h5_drvr; /* File Driver value from environment */ /* Output message about test being performed */ MESSAGE(5, ("Testing Low-Level File I/O\n")); @@ -5332,6 +7207,7 @@ test_file(void) test_filespace_round_compatible(); /* Testing file space compatibility for files from trunk to 1_8 to trunk */ test_filespace_1_10_0_compatible(); /* Testing file space compatibility for files from release 1.10.0 */ test_libver_bounds(); /* Test compatibility for file space management */ + test_libver_bounds_low_high(); test_libver_macros(); /* Test the macros for library version comparison */ test_libver_macros2(); /* Test the macros for library version comparison */ #ifndef H5_NO_DEPRECATED_SYMBOLS @@ -5339,15 +7215,15 @@ test_file(void) #endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* test_file() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_file + * Function: cleanup_file * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * July 2, 1998 * * Modifications: diff --git a/test/tgenprop.c b/test/tgenprop.c index 582b36e..5031846 100644 --- a/test/tgenprop.c +++ b/test/tgenprop.c @@ -13,13 +13,13 @@ /*********************************************************** * -* Test program: tgenprop +* Test program: tgenprop * * Test the Generic Property functionality * *************************************************************/ -#define H5P_FRIEND /*suppress error about including H5Ppkg */ +#define H5P_FRIEND /*suppress error about including H5Ppkg */ /* Define this macro to indicate that the testing APIs should be available */ #define H5P_TESTING @@ -27,7 +27,7 @@ #include "testhdf5.h" #include "H5Dprivate.h" /* For Dataset creation property list names */ -#include "H5Ppkg.h" /* Generic Properties */ +#include "H5Ppkg.h" /* Generic Properties */ #define FILENAME "tgenprop.h5" @@ -80,11 +80,11 @@ typedef struct count_data_t { static void test_genprop_basic_class(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t cid2; /* Generic Property class ID */ - hid_t cid3; /* Generic Property class ID */ + hid_t cid1; /* Generic Property class ID */ + hid_t cid2; /* Generic Property class ID */ + hid_t cid3; /* Generic Property class ID */ char *name; /* Name of class */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Class Creation Functionality\n")); @@ -169,10 +169,10 @@ test_genprop_basic_class(void) static void test_genprop_basic_class_prop(void) { - hid_t cid1; /* Generic Property class ID */ - size_t size; /* Size of property */ - size_t nprops; /* Number of properties in class */ - herr_t ret; /* Generic return value */ + hid_t cid1; /* Generic Property class ID */ + size_t size; /* Size of property */ + size_t nprops; /* Number of properties in class */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Class Properties Functionality\n")); @@ -311,8 +311,8 @@ test_genprop_iter1(hid_t H5_ATTR_UNUSED id, const char *name, static void test_genprop_class_iter(void) { - hid_t cid1; /* Generic Property class ID */ - size_t nprops; /* Number of properties in class */ + hid_t cid1; /* Generic Property class ID */ + size_t nprops; /* Number of properties in class */ int idx; /* Index to start iteration at */ struct { /* Struct for iterations */ int iter_count; @@ -323,7 +323,7 @@ test_genprop_class_iter(void) PROP2_NAME, PROP3_NAME, PROP4_NAME}; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Class Property Iteration Functionality\n")); @@ -417,17 +417,17 @@ test_genprop_cls_cls_cb1(hid_t list_id, void *create_data) static void test_genprop_class_callback(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t cid2; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - hid_t lid2; /* Generic Property list ID */ - hid_t lid3; /* Generic Property list ID */ - size_t nprops; /* Number of properties in class */ + hid_t cid1; /* Generic Property class ID */ + hid_t cid2; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + hid_t lid2; /* Generic Property list ID */ + hid_t lid3; /* Generic Property list ID */ + size_t nprops; /* Number of properties in class */ struct { /* Struct for callbacks */ int count; hid_t id; } crt_cb_struct, cpy_cb_struct, cls_cb_struct; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Class Callback Functionality\n")); @@ -596,14 +596,14 @@ test_genprop_class_callback(void) static void test_genprop_basic_list(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t cid2; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - size_t nprops; /* Number of properties */ - size_t size; /* Size of property */ + hid_t cid1; /* Generic Property class ID */ + hid_t cid2; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + size_t nprops; /* Number of properties */ + size_t size; /* Size of property */ int prop1_value; /* Value for property #1 */ float prop2_value; /* Value for property #2 */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Creation Functionality\n")); @@ -678,8 +678,8 @@ test_genprop_basic_list(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_FLT_ABS_EQUAL(prop2_value,*PROP2_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); /* Close list */ @@ -702,14 +702,14 @@ test_genprop_basic_list(void) static void test_genprop_basic_list_prop(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - size_t nprops; /* Number of properties */ + hid_t cid1; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + size_t nprops; /* Number of properties */ int prop1_value; /* Value for property #1 */ float prop2_value; /* Value for property #2 */ char prop3_value[10];/* Property #3 value */ double prop4_value; /* Property #4 value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Property Functionality\n")); @@ -770,8 +770,8 @@ test_genprop_basic_list_prop(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_FLT_ABS_EQUAL(prop2_value,*PROP2_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); /* Check values of temporary properties (set with regular values) */ @@ -783,8 +783,8 @@ test_genprop_basic_list_prop(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_DBL_ABS_EQUAL(prop4_value, *PROP4_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); /* Delete permanent property */ ret = H5Premove(lid1, PROP2_NAME); @@ -820,8 +820,8 @@ test_genprop_basic_list_prop(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_DBL_ABS_EQUAL(prop4_value, *PROP4_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); /* Close list */ ret = H5Pclose(lid1); @@ -856,9 +856,9 @@ test_genprop_iter2(hid_t H5_ATTR_UNUSED id, const char *name, static void test_genprop_list_iter(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - size_t nprops; /* Number of properties */ + hid_t cid1; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + size_t nprops; /* Number of properties */ int idx; /* Index to start iteration at */ struct { /* Struct for iterations */ int iter_count; @@ -870,7 +870,7 @@ test_genprop_list_iter(void) PROP1_NAME, PROP2_NAME }; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Generic Property List Iteration Functionality\n")); @@ -1144,10 +1144,10 @@ test_genprop_prop_del_cb2(hid_t plist_id, const char *name, size_t size, void *v static void test_genprop_list_callback(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - hid_t lid2; /* 2nd Generic Property list ID */ - size_t nprops; /* Number of properties in class */ + hid_t cid1; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + hid_t lid2; /* 2nd Generic Property list ID */ + size_t nprops; /* Number of properties in class */ int prop1_value; /* Value for property #1 */ int prop1_new_value=20; /* Property #1 new value */ float prop2_value; /* Value for property #2 */ @@ -1158,7 +1158,7 @@ test_genprop_list_callback(void) int count; hid_t id; } cop_cb_struct; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Property Callback Functionality\n")); @@ -1225,8 +1225,8 @@ test_genprop_list_callback(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_FLT_ABS_EQUAL(prop2_value,*PROP2_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", (double)*PROP2_DEF_VALUE, (double)prop2_value, (int)__LINE__, __FILE__); /* Check values of temporary properties (set with regular values) */ ret = H5Pget(lid1, PROP3_NAME,&prop3_value); @@ -1240,8 +1240,8 @@ test_genprop_list_callback(void) CHECK_I(ret, "H5Pget"); /* Verify the floating-poing value in this way to avoid compiler warning. */ if(!H5_DBL_ABS_EQUAL(prop4_value, *PROP4_DEF_VALUE)) - printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", - "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); + printf("*** UNEXPECTED VALUE from %s should be %f, but is %f at line %4d in %s\n", + "H5Pget", *PROP4_DEF_VALUE, prop4_value, (int)__LINE__, __FILE__); /* Verify get callback information for properties tracked */ VERIFY(prop1_cb_info.get_count, 1, "H5Pget"); @@ -1373,7 +1373,7 @@ test_genprop_list_addprop(void) hid_t sid; /* Dataspace ID */ hid_t pid; /* Property List ID */ int prop1_value; /* Value for property #1 */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Create file */ fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -1448,7 +1448,7 @@ test_genprop_class_addprop(void) hid_t cid; /* Property Class ID */ hid_t pid; /* Property List ID */ int prop1_value; /* Value for property #1 */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Create file */ fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -1570,7 +1570,7 @@ static void test_genprop_list_add_remove_prop(void) { hid_t pid; /* Property List ID */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Create a dataset creation property list */ pid = H5Pcreate(H5P_DATASET_CREATE); @@ -1607,11 +1607,11 @@ test_genprop_list_add_remove_prop(void) static void test_genprop_equal(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t lid1; /* Generic Property list ID */ - hid_t lid2; /* Generic Property list ID */ + hid_t cid1; /* Generic Property class ID */ + hid_t lid1; /* Generic Property list ID */ + hid_t lid2; /* Generic Property list ID */ int prop1_new_value = 20; /* Property #1 new value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Generic Property List Equal Functionality\n")); @@ -1756,11 +1756,11 @@ test_genprop_equal(void) static void test_genprop_path(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t cid2; /* Generic Property class ID */ - hid_t cid3; /* Generic Property class ID */ + hid_t cid1; /* Generic Property class ID */ + hid_t cid2; /* Generic Property class ID */ + hid_t cid3; /* Generic Property class ID */ char *path; /* Class path */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Generic Property List Class Path Functionality\n")); @@ -1828,10 +1828,10 @@ test_genprop_path(void) static void test_genprop_refcount(void) { - hid_t cid1; /* Generic Property class ID */ - hid_t lid1; /* Generic Property class ID */ + hid_t cid1; /* Generic Property class ID */ + hid_t lid1; /* Generic Property class ID */ char *name; /* Name of class */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Generic Property List Reference Count Functionality\n")); @@ -1901,10 +1901,10 @@ test_genprop_refcount(void) static void test_genprop_deprec_class(void) { - hid_t cid1; /* Generic Property class ID */ - size_t size; /* Size of property */ - size_t nprops; /* Number of properties in class */ - herr_t ret; /* Generic return value */ + hid_t cid1; /* Generic Property class ID */ + size_t size; /* Size of property */ + size_t nprops; /* Number of properties in class */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Deprecated Generic Property List Functions\n")); @@ -2034,7 +2034,7 @@ test_genprop_deprec_list(void) hid_t sid; /* Dataspace ID */ hid_t pid; /* Property List ID */ int prop1_value; /* Value for property #1 */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Create file */ fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -2130,15 +2130,15 @@ test_genprop(void) } /* test_genprop() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_genprop + * Function: cleanup_genprop * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * June 8, 1999 * * Modifications: diff --git a/test/th5o.c b/test/th5o.c index 144ea4c..00d706c 100644 --- a/test/th5o.c +++ b/test/th5o.c @@ -774,7 +774,7 @@ test_h5o_link(void) hid_t lcpl_id=-1; hsize_t dims[2] = {TEST6_DIM1, TEST6_DIM2}; htri_t committed; /* Whether the named datatype is committed */ - unsigned new_format; /* Whether to use the new format or not */ + H5F_libver_t low, high; /* File format bounds */ int *wdata; int *rdata; int i, n; @@ -801,98 +801,103 @@ test_h5o_link(void) ret = H5Pset_create_intermediate_group(lcpl_id, TRUE); CHECK(ret, FAIL, "H5Pset_create_intermediate_group"); - /* Loop over using new group format */ - for(new_format = FALSE; new_format <= TRUE; new_format++) { - - /* Make a FAPL that uses the "use the latest version of the format" bounds */ - fapl_id = H5Pcreate(H5P_FILE_ACCESS); - CHECK(fapl_id, FAIL, "H5Pcreate"); - - /* Set the "use the latest version of the format" bounds for creating objects in the file */ - ret = H5Pset_libver_bounds(fapl_id, (new_format ? H5F_LIBVER_LATEST : H5F_LIBVER_EARLIEST), H5F_LIBVER_LATEST); - CHECK(ret, FAIL, "H5Pset_libver_bounds"); - - /* Create a new HDF5 file */ - file_id = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id); - CHECK(file_id, FAIL, "H5Fcreate"); - - /* Close the FAPL */ - ret = H5Pclose(fapl_id); - CHECK(ret, FAIL, "H5Pclose"); - - - /* Create and commit a datatype with no name */ - type_id = H5Tcopy(H5T_NATIVE_INT); - CHECK(type_id, FAIL, "H5Fcreate"); - ret = H5Tcommit_anon(file_id, type_id, H5P_DEFAULT, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Tcommit_anon"); - committed = H5Tcommitted(type_id); - VERIFY(committed, TRUE, "H5Tcommitted"); - - /* Create a dataset with no name using the committed datatype*/ - dset_id = H5Dcreate_anon(file_id, type_id, space_id, H5P_DEFAULT, H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dcreate_anon"); - - /* Verify that we can write to and read from the dataset */ - - /* Write the data to the dataset */ - ret = H5Dwrite(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); - CHECK(ret, FAIL, "H5Dwrite"); - - /* Read the data back */ - ret = H5Dread(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - - /* Verify the data */ - for(i = 0; i < (TEST6_DIM1 * TEST6_DIM2); i++) - VERIFY(wdata[i], rdata[i], "H5Dread"); - - /* Create a group with no name*/ - group_id = H5Gcreate_anon(file_id, H5P_DEFAULT, H5P_DEFAULT); - CHECK(group_id, FAIL, "H5Gcreate_anon"); - - /* Link nameless datatype into nameless group */ - ret = H5Olink(type_id, group_id, "datatype", H5P_DEFAULT, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Olink"); - - /* Link nameless dataset into nameless group with intermediate group */ - ret = H5Olink(dset_id, group_id, "inter_group/dataset", lcpl_id, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Olink"); - - /* Close IDs for dataset and datatype */ - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - ret = H5Tclose(type_id); - CHECK(ret, FAIL, "H5Tclose"); - - /* Re-open datatype using new link */ - type_id = H5Topen2(group_id, "datatype", H5P_DEFAULT); - CHECK(type_id, FAIL, "H5Topen2"); - - /* Link nameless group to root group and close the group ID*/ - ret = H5Olink(group_id, file_id, "/group", H5P_DEFAULT, H5P_DEFAULT); - CHECK(ret, FAIL, "H5Olink"); - ret = H5Gclose(group_id); - CHECK(ret, FAIL, "H5Gclose"); - - /* Open dataset through root group and verify its data */ - dset_id = H5Dopen2(file_id, "/group/inter_group/dataset", H5P_DEFAULT); - CHECK(dset_id, FAIL, "H5Dopen2"); - - /* Read data from dataset */ - ret = H5Dread(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); - CHECK(ret, FAIL, "H5Dread"); - for(i = 0; i < (TEST6_DIM1 * TEST6_DIM2); i++) - VERIFY(wdata[i], rdata[i], "H5Dread"); - - /* Close open IDs */ - ret = H5Dclose(dset_id); - CHECK(ret, FAIL, "H5Dclose"); - ret = H5Tclose(type_id); - CHECK(ret, FAIL, "H5Tclose"); - ret = H5Fclose(file_id); - CHECK(ret, FAIL, "H5Fclose"); - } /* end for */ + /* Create a file access property list */ + fapl_id = H5Pcreate(H5P_FILE_ACCESS); + CHECK(fapl_id, FAIL, "H5Pcreate"); + + /* Loop through all the combinations of low/high library format bounds */ + for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) { + for(high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) { + + /* Set version bounds */ + H5E_BEGIN_TRY { + ret = H5Pset_libver_bounds(fapl_id, low, high); + } H5E_END_TRY; + + if (ret < 0) /* Invalid low/high combinations */ + continue; + + /* Create a new HDF5 file */ + file_id = H5Fcreate(TEST_FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_id); + CHECK(file_id, FAIL, "H5Fcreate"); + + /* Close the FAPL */ + ret = H5Pclose(fapl_id); + CHECK(ret, FAIL, "H5Pclose"); + + /* Create and commit a datatype with no name */ + type_id = H5Tcopy(H5T_NATIVE_INT); + CHECK(type_id, FAIL, "H5Fcreate"); + ret = H5Tcommit_anon(file_id, type_id, H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Tcommit_anon"); + committed = H5Tcommitted(type_id); + VERIFY(committed, TRUE, "H5Tcommitted"); + + /* Create a dataset with no name using the committed datatype*/ + dset_id = H5Dcreate_anon(file_id, type_id, space_id, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dset_id, FAIL, "H5Dcreate_anon"); + + /* Verify that we can write to and read from the dataset */ + + /* Write the data to the dataset */ + ret = H5Dwrite(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); + CHECK(ret, FAIL, "H5Dwrite"); + + /* Read the data back */ + ret = H5Dread(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); + CHECK(ret, FAIL, "H5Dread"); + + /* Verify the data */ + for(i = 0; i < (TEST6_DIM1 * TEST6_DIM2); i++) + VERIFY(wdata[i], rdata[i], "H5Dread"); + + /* Create a group with no name*/ + group_id = H5Gcreate_anon(file_id, H5P_DEFAULT, H5P_DEFAULT); + CHECK(group_id, FAIL, "H5Gcreate_anon"); + + /* Link nameless datatype into nameless group */ + ret = H5Olink(type_id, group_id, "datatype", H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Olink"); + + /* Link nameless dataset into nameless group with intermediate group */ + ret = H5Olink(dset_id, group_id, "inter_group/dataset", lcpl_id, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Olink"); + + /* Close IDs for dataset and datatype */ + ret = H5Dclose(dset_id); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Tclose(type_id); + CHECK(ret, FAIL, "H5Tclose"); + + /* Re-open datatype using new link */ + type_id = H5Topen2(group_id, "datatype", H5P_DEFAULT); + CHECK(type_id, FAIL, "H5Topen2"); + + /* Link nameless group to root group and close the group ID*/ + ret = H5Olink(group_id, file_id, "/group", H5P_DEFAULT, H5P_DEFAULT); + CHECK(ret, FAIL, "H5Olink"); + ret = H5Gclose(group_id); + CHECK(ret, FAIL, "H5Gclose"); + + /* Open dataset through root group and verify its data */ + dset_id = H5Dopen2(file_id, "/group/inter_group/dataset", H5P_DEFAULT); + CHECK(dset_id, FAIL, "H5Dopen2"); + + /* Read data from dataset */ + ret = H5Dread(dset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata); + CHECK(ret, FAIL, "H5Dread"); + for(i = 0; i < (TEST6_DIM1 * TEST6_DIM2); i++) + VERIFY(wdata[i], rdata[i], "H5Dread"); + + /* Close open IDs */ + ret = H5Dclose(dset_id); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Tclose(type_id); + CHECK(ret, FAIL, "H5Tclose"); + ret = H5Fclose(file_id); + CHECK(ret, FAIL, "H5Fclose"); + } /* for high */ + } /* for low */ /* Close remaining IDs */ ret = H5Sclose(space_id); diff --git a/test/th5s.c b/test/th5s.c index 9712bf1..9d5273f 100644 --- a/test/th5s.c +++ b/test/th5s.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: th5s +* Test program: th5s * * Test the dataspace functionality * @@ -23,9 +23,24 @@ #include "H5srcdir.h" #include "H5Bprivate.h" -#include "H5Sprivate.h" +#include "H5Iprivate.h" #include "H5Pprivate.h" +/* + * This file needs to access private information from the H5S package. + * This file also needs to access the dataspace testing code. + */ +#define H5S_FRIEND /*suppress error about including H5Spkg */ +#include "H5Spkg.h" /* Dataspaces */ + +/* + * This file needs to access private information from the H5O package. + * This file also needs to access the dataspace testing code. + */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#define H5O_TESTING +#include "H5Opkg.h" /* Object header */ + #define TESTFILE "th5s.h5" #define DATAFILE "th5s1.h5" #define NULLFILE "th5s2.h5" @@ -42,31 +57,31 @@ #define EXTFILE_NAME "ext_file" /* 3-D dataset with fixed dimensions */ -#define SPACE1_RANK 3 -#define SPACE1_DIM1 3 -#define SPACE1_DIM2 15 -#define SPACE1_DIM3 13 +#define SPACE1_RANK 3 +#define SPACE1_DIM1 3 +#define SPACE1_DIM2 15 +#define SPACE1_DIM3 13 /* 4-D dataset with one unlimited dimension */ -#define SPACE2_RANK 4 -#define SPACE2_DIM1 0 -#define SPACE2_DIM2 15 -#define SPACE2_DIM3 13 -#define SPACE2_DIM4 23 -#define SPACE2_MAX1 H5S_UNLIMITED -#define SPACE2_MAX2 15 -#define SPACE2_MAX3 13 -#define SPACE2_MAX4 23 +#define SPACE2_RANK 4 +#define SPACE2_DIM1 0 +#define SPACE2_DIM2 15 +#define SPACE2_DIM3 13 +#define SPACE2_DIM4 23 +#define SPACE2_MAX1 H5S_UNLIMITED +#define SPACE2_MAX2 15 +#define SPACE2_MAX3 13 +#define SPACE2_MAX4 23 /* Scalar dataset with simple datatype */ -#define SPACE3_RANK 0 +#define SPACE3_RANK 0 unsigned space3_data=65; /* Scalar dataset with compound datatype */ -#define SPACE4_FIELDNAME1 "c1" -#define SPACE4_FIELDNAME2 "u" -#define SPACE4_FIELDNAME3 "f" -#define SPACE4_FIELDNAME4 "c2" +#define SPACE4_FIELDNAME1 "c1" +#define SPACE4_FIELDNAME2 "u" +#define SPACE4_FIELDNAME3 "f" +#define SPACE4_FIELDNAME4 "c2" size_t space4_field1_off=0; size_t space4_field2_off=0; size_t space4_field3_off=0; @@ -90,21 +105,21 @@ struct space4_struct { static void test_h5s_basic(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t sid1, sid2; /* Dataspace ID */ - hid_t dset1; /* Dataset ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t sid1, sid2; /* Dataspace ID */ + hid_t dset1; /* Dataset ID */ hid_t aid1; /* Attribute ID */ - int rank; /* Logical rank of dataspace */ - hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; - hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2, SPACE2_DIM3, - SPACE2_DIM4}; - hsize_t dims3[H5S_MAX_RANK+1]; - hsize_t max2[] = {SPACE2_MAX1, SPACE2_MAX2, SPACE2_MAX3, - SPACE2_MAX4}; - hsize_t tdims[4]; /* Dimension array to test with */ - hsize_t tmax[4]; - hssize_t n; /* Number of dataspace elements */ - herr_t ret; /* Generic return value */ + int rank; /* Logical rank of dataspace */ + hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; + hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2, SPACE2_DIM3, + SPACE2_DIM4}; + hsize_t dims3[H5S_MAX_RANK+1]; + hsize_t max2[] = {SPACE2_MAX1, SPACE2_MAX2, SPACE2_MAX3, + SPACE2_MAX4}; + hsize_t tdims[4]; /* Dimension array to test with */ + hsize_t tmax[4]; + hssize_t n; /* Number of dataspace elements */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Dataspace Manipulation\n")); @@ -115,7 +130,7 @@ test_h5s_basic(void) n = H5Sget_simple_extent_npoints(sid1); CHECK(n, FAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, SPACE1_DIM1 * SPACE1_DIM2 * SPACE1_DIM3, - "H5Sget_simple_extent_npoints"); + "H5Sget_simple_extent_npoints"); rank = H5Sget_simple_extent_ndims(sid1); CHECK(rank, FAIL, "H5Sget_simple_extent_ndims"); @@ -124,7 +139,7 @@ test_h5s_basic(void) rank = H5Sget_simple_extent_dims(sid1, tdims, NULL); CHECK(rank, FAIL, "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tdims, dims1, SPACE1_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); sid2 = H5Screate_simple(SPACE2_RANK, dims2, max2); CHECK(sid2, FAIL, "H5Screate_simple"); @@ -132,7 +147,7 @@ test_h5s_basic(void) n = H5Sget_simple_extent_npoints(sid2); CHECK(n, FAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, SPACE2_DIM1 * SPACE2_DIM2 * SPACE2_DIM3 * SPACE2_DIM4, - "H5Sget_simple_extent_npoints"); + "H5Sget_simple_extent_npoints"); rank = H5Sget_simple_extent_ndims(sid2); CHECK(rank, FAIL, "H5Sget_simple_extent_ndims"); @@ -141,9 +156,9 @@ test_h5s_basic(void) rank = H5Sget_simple_extent_dims(sid2, tdims, tmax); CHECK(rank, FAIL, "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tdims, dims2, SPACE2_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tmax, max2, SPACE2_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); /* Change max dims to be equal to the dimensions */ ret = H5Sset_extent_simple(sid1, SPACE1_RANK, dims1, NULL); @@ -151,9 +166,9 @@ test_h5s_basic(void) rank = H5Sget_simple_extent_dims(sid1, tdims, tmax); CHECK(rank, FAIL, "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tdims, dims1, SPACE1_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tmax, dims1, SPACE1_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); ret = H5Sclose(sid1); CHECK(ret, FAIL, "H5Sclose"); @@ -166,7 +181,7 @@ test_h5s_basic(void) * dimensions. */ H5E_BEGIN_TRY { - sid1 = H5Screate_simple(H5S_MAX_RANK+1, dims3, NULL); + sid1 = H5Screate_simple(H5S_MAX_RANK+1, dims3, NULL); } H5E_END_TRY; VERIFY(sid1, FAIL, "H5Screate_simple"); @@ -289,7 +304,7 @@ test_h5s_basic(void) CHECK(ret, FAIL, "H5Sclose"); ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_basic() */ +} /* test_h5s_basic() */ /**************************************************************** ** @@ -349,16 +364,16 @@ test_h5s_null(void) hsize_t start[1]={0}; hsize_t count[1]={0}; - ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, NULL, count, NULL); + ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, NULL, count, NULL); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Sselect_hyperslab"); /* Check to be sure we can't set a point selection on a null dataspace */ H5E_BEGIN_TRY { - hsize_t coord[1][1]; /* Coordinates for point selection */ + hsize_t coord[1][1]; /* Coordinates for point selection */ coord[0][0]=0; - ret = H5Sselect_elements(sid, H5S_SELECT_SET, (size_t)1, (const hsize_t *)coord); + ret = H5Sselect_elements(sid, H5S_SELECT_SET, (size_t)1, (const hsize_t *)coord); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Sselect_elements"); @@ -519,18 +534,18 @@ test_h5s_null(void) static void test_h5s_zero_dim(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t sid1, attr_sid; /* Dataspace ID */ - hid_t sid_chunk; /* Dataspace ID for chunked dataset */ - hid_t dset1; /* Dataset ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t sid1, attr_sid; /* Dataspace ID */ + hid_t sid_chunk; /* Dataspace ID for chunked dataset */ + hid_t dset1; /* Dataset ID */ hid_t plist_id; /* Dataset creation property list */ hid_t attr; /* Attribute ID */ - int rank; /* Logical rank of dataspace */ - hsize_t dims1[] = {0, SPACE1_DIM2, SPACE1_DIM3}; - hsize_t max_dims[] = {SPACE1_DIM1+1, SPACE1_DIM2, SPACE1_DIM3}; - hsize_t extend_dims[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; + int rank; /* Logical rank of dataspace */ + hsize_t dims1[] = {0, SPACE1_DIM2, SPACE1_DIM3}; + hsize_t max_dims[] = {SPACE1_DIM1+1, SPACE1_DIM2, SPACE1_DIM3}; + hsize_t extend_dims[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; hsize_t chunk_dims[] = {SPACE1_DIM1, SPACE1_DIM2/3, SPACE1_DIM3}; - hsize_t tdims[SPACE1_RANK]; /* Dimension array to test with */ + hsize_t tdims[SPACE1_RANK]; /* Dimension array to test with */ int wdata[SPACE1_DIM2][SPACE1_DIM3]; int rdata[SPACE1_DIM2][SPACE1_DIM3]; short wdata_short[SPACE1_DIM2][SPACE1_DIM3]; @@ -540,12 +555,12 @@ test_h5s_zero_dim(void) int val = 3; hsize_t start[] = {0, 0, 0}; hsize_t count[] = {3, 15, 13}; - hsize_t coord[1][3]; /* Coordinates for point selection */ + hsize_t coord[1][3]; /* Coordinates for point selection */ hssize_t nelem; /* Number of elements */ H5S_sel_type sel_type; /* Type of selection currently */ H5S_class_t stype; /* dataspace type */ H5D_alloc_time_t alloc_time; /* Space allocation time */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ unsigned int i, j, k; /* Output message about test being performed */ @@ -621,8 +636,8 @@ test_h5s_zero_dim(void) CHECK(sid_chunk, FAIL, "H5Screate_simple"); /*============================================ - * Make sure we can use 0-dimension to create - * contiguous, chunked, compact, and external + * Make sure we can use 0-dimension to create + * contiguous, chunked, compact, and external * datasets, and also attribute. *============================================ */ @@ -686,7 +701,7 @@ test_h5s_zero_dim(void) } } - /* Select a hyperslab beyond its current dimension sizes, then try to write + /* Select a hyperslab beyond its current dimension sizes, then try to write * the data. It should fail. */ ret = H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL); CHECK(ret, FAIL, "H5Sselect_hyperslab"); @@ -700,7 +715,7 @@ test_h5s_zero_dim(void) ret = H5Sselect_none(sid1); CHECK(ret, FAIL, "H5Sselect_none"); - /* Select a point beyond the dimension size, then try to write the data. + /* Select a point beyond the dimension size, then try to write the data. * It should fail. */ coord[0][0]=2; coord[0][1]=5; coord[0][2]=3; ret = H5Sselect_elements(sid1, H5S_SELECT_SET, (size_t)1, (const hsize_t *)coord); @@ -752,8 +767,8 @@ test_h5s_zero_dim(void) } } - /* Now extend the dataset to SPACE1_DIM1*SPACE1_DIM2*SPACE1_DIM3 and make sure - * we can write data to it */ + /* Now extend the dataset to SPACE1_DIM1*SPACE1_DIM2*SPACE1_DIM3 and make sure + * we can write data to it */ extend_dims[0] = SPACE1_DIM1; ret = H5Dset_extent(dset1, extend_dims); CHECK(ret, FAIL, "H5Dset_extent"); @@ -953,10 +968,10 @@ test_h5s_zero_dim(void) CHECK(ret, FAIL, "H5Aclose"); /*=============================================================== - * Extend the dimension to make it a normal dataspace (3x15x13). - * Verify that data can be written to and read from the chunked - * dataset now. - *=============================================================== + * Extend the dimension to make it a normal dataspace (3x15x13). + * Verify that data can be written to and read from the chunked + * dataset now. + *=============================================================== */ dims1[0]=SPACE1_DIM1; ret = H5Sset_extent_simple(sid_chunk,SPACE1_RANK,dims1,max_dims); @@ -1157,14 +1172,14 @@ test_h5s_zero_dim(void) static void test_h5s_encode(void) { - hid_t sid1, sid2, sid3; /* Dataspace ID */ + hid_t sid1, sid2, sid3; /* Dataspace ID */ hid_t decoded_sid1, decoded_sid2, decoded_sid3; - int rank; /* Logical rank of dataspace */ - hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; + int rank; /* Logical rank of dataspace */ + hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3}; size_t sbuf_size=0, null_size=0, scalar_size=0; unsigned char *sbuf=NULL, *null_sbuf=NULL, *scalar_buf=NULL; - hsize_t tdims[4]; /* Dimension array to test with */ - hssize_t n; /* Number of dataspace elements */ + hsize_t tdims[4]; /* Dimension array to test with */ + hssize_t n; /* Number of dataspace elements */ hsize_t start[] = {0, 0, 0}; hsize_t stride[] = {2, 5, 3}; hsize_t count[] = {2, 2, 2}; @@ -1172,8 +1187,8 @@ test_h5s_encode(void) H5S_sel_type sel_type; H5S_class_t space_type; hssize_t nblocks; - hid_t ret_id; /* Generic hid_t return value */ - herr_t ret; /* Generic return value */ + hid_t ret_id; /* Generic hid_t return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Dataspace Encoding and Decoding\n")); @@ -1197,7 +1212,7 @@ test_h5s_encode(void) /* Try decoding bogus buffer */ H5E_BEGIN_TRY { - ret_id = H5Sdecode(sbuf); + ret_id = H5Sdecode(sbuf); } H5E_END_TRY; VERIFY(ret_id, FAIL, "H5Sdecode"); @@ -1212,7 +1227,7 @@ test_h5s_encode(void) n = H5Sget_simple_extent_npoints(decoded_sid1); CHECK(n, FAIL, "H5Sget_simple_extent_npoints"); VERIFY(n, SPACE1_DIM1 * SPACE1_DIM2 * SPACE1_DIM3, - "H5Sget_simple_extent_npoints"); + "H5Sget_simple_extent_npoints"); rank = H5Sget_simple_extent_ndims(decoded_sid1); CHECK(rank, FAIL, "H5Sget_simple_extent_ndims"); @@ -1221,7 +1236,7 @@ test_h5s_encode(void) rank = H5Sget_simple_extent_dims(decoded_sid1, tdims, NULL); CHECK(rank, FAIL, "H5Sget_simple_extent_dims"); VERIFY(HDmemcmp(tdims, dims1, SPACE1_RANK * sizeof(hsize_t)), 0, - "H5Sget_simple_extent_dims"); + "H5Sget_simple_extent_dims"); /* Verify hyperslabe selection */ sel_type = H5Sget_select_type(decoded_sid1); @@ -1311,7 +1326,7 @@ test_h5s_encode(void) HDfree(sbuf); HDfree(null_sbuf); HDfree(scalar_buf); -} /* test_h5s_encode() */ +} /* test_h5s_encode() */ /**************************************************************** ** @@ -1321,14 +1336,14 @@ test_h5s_encode(void) static void test_h5s_scalar_write(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - int rank; /* Logical rank of dataspace */ - hsize_t tdims[4]; /* Dimension array to test with */ - hssize_t n; /* Number of dataspace elements */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + int rank; /* Logical rank of dataspace */ + hsize_t tdims[4]; /* Dimension array to test with */ + hssize_t n; /* Number of dataspace elements */ H5S_class_t ext_type; /* Extent type */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Scalar Dataspace Manipulation during Writing\n")); @@ -1380,7 +1395,7 @@ test_h5s_scalar_write(void) /* Close file */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_scalar_write() */ +} /* test_h5s_scalar_write() */ /**************************************************************** ** @@ -1390,14 +1405,14 @@ test_h5s_scalar_write(void) static void test_h5s_scalar_read(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - int rank; /* Logical rank of dataspace */ - hsize_t tdims[4]; /* Dimension array to test with */ - hssize_t n; /* Number of dataspace elements */ - unsigned rdata; /* Scalar data read in */ - herr_t ret; /* Generic return value */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + int rank; /* Logical rank of dataspace */ + hsize_t tdims[4]; /* Dimension array to test with */ + hssize_t n; /* Number of dataspace elements */ + unsigned rdata; /* Scalar data read in */ + herr_t ret; /* Generic return value */ H5S_class_t ext_type; /* Extent type */ /* Output message about test being performed */ @@ -1444,7 +1459,7 @@ test_h5s_scalar_read(void) /* Close file */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_scalar_read() */ +} /* test_h5s_scalar_read() */ /**************************************************************** ** @@ -1455,14 +1470,14 @@ test_h5s_scalar_read(void) static void test_h5s_compound_scalar_write(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t tid1; /* Attribute datatype ID */ - hid_t sid1; /* Dataspace ID */ - int rank; /* Logical rank of dataspace */ - hsize_t tdims[4]; /* Dimension array to test with */ - hssize_t n; /* Number of dataspace elements */ - herr_t ret; /* Generic return value */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t tid1; /* Attribute datatype ID */ + hid_t sid1; /* Dataspace ID */ + int rank; /* Logical rank of dataspace */ + hsize_t tdims[4]; /* Dimension array to test with */ + hssize_t n; /* Number of dataspace elements */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Scalar Dataspace Manipulation for Writing Compound Datatypes\n")); @@ -1476,19 +1491,19 @@ test_h5s_compound_scalar_write(void) CHECK(tid1, FAIL, "H5Tcreate"); space4_field1_off=HOFFSET(struct space4_struct, c1); ret = H5Tinsert(tid1, SPACE4_FIELDNAME1, space4_field1_off, - H5T_NATIVE_SCHAR); + H5T_NATIVE_SCHAR); CHECK(ret, FAIL, "H5Tinsert"); space4_field2_off=HOFFSET(struct space4_struct, u); ret = H5Tinsert(tid1, SPACE4_FIELDNAME2, space4_field2_off, - H5T_NATIVE_UINT); + H5T_NATIVE_UINT); CHECK(ret, FAIL, "H5Tinsert"); space4_field3_off=HOFFSET(struct space4_struct, f); ret = H5Tinsert(tid1, SPACE4_FIELDNAME3, space4_field3_off, - H5T_NATIVE_FLOAT); + H5T_NATIVE_FLOAT); CHECK(ret, FAIL, "H5Tinsert"); space4_field4_off=HOFFSET(struct space4_struct, c2); ret = H5Tinsert(tid1, SPACE4_FIELDNAME4, space4_field4_off, - H5T_NATIVE_SCHAR); + H5T_NATIVE_SCHAR); CHECK(ret, FAIL, "H5Tinsert"); /* Create scalar dataspace */ @@ -1528,7 +1543,7 @@ test_h5s_compound_scalar_write(void) /* Close file */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_compound_scalar_write() */ +} /* test_h5s_compound_scalar_write() */ /**************************************************************** ** @@ -1539,15 +1554,15 @@ test_h5s_compound_scalar_write(void) static void test_h5s_compound_scalar_read(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t type; /* Datatype */ - int rank; /* Logical rank of dataspace */ - hsize_t tdims[4]; /* Dimension array to test with */ - hssize_t n; /* Number of dataspace elements */ - struct space4_struct rdata; /* Scalar data read in */ - herr_t ret; /* Generic return value */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t type; /* Datatype */ + int rank; /* Logical rank of dataspace */ + hsize_t tdims[4]; /* Dimension array to test with */ + hssize_t n; /* Number of dataspace elements */ + struct space4_struct rdata; /* Scalar data read in */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Scalar Dataspace Manipulation for Reading Compound Datatypes\n")); @@ -1601,7 +1616,7 @@ test_h5s_compound_scalar_read(void) /* Close file */ ret = H5Fclose(fid1); CHECK(ret, FAIL, "H5Fclose"); -} /* test_h5s_compound_scalar_read() */ +} /* test_h5s_compound_scalar_read() */ /* Data arrays for chunk test */ double chunk_data_dbl[50000][3]; @@ -2367,6 +2382,130 @@ test_h5s_bug1(void) CHECK(ret, FAIL, "H5Sclose"); } /* test_h5s_bug1() */ + +/*------------------------------------------------------------------------- + * Function: test_versionbounds + * + * Purpose: Tests version bounds with dataspace. + * + * Description: + * This function creates a file with lower bounds then later + * reopens it with higher bounds to show that the dataspace + * version is upgraded appropriately. + * + * Return: Success: 0 + * Failure: number of errors + * + *------------------------------------------------------------------------- + */ +#define VERBFNAME "tverbounds_dspace.h5" +#define BASIC_DSET "Basic Dataset" +#define LATEST_DSET "Latest Dataset" +static void +test_versionbounds(void) +{ + hid_t file = -1; /* File ID */ + hid_t space = -1; /* Dataspace ID */ + hid_t dset = -1; /* Dataset ID */ + hid_t fapl = -1; /* File access property list ID */ + hid_t dset_space = -1; /* Retrieved dataset's dataspace ID */ + hsize_t dim[1]; /* Dataset dimensions */ + H5F_libver_t low, high; /* File format bounds */ + H5S_t *spacep = NULL; /* Pointer to internal dataspace */ + herr_t ret = 0; /* Generic return value */ + + /* Output message about test being performed */ + MESSAGE(5, ("Testing Version Bounds\n")); + + /* Create a file access property list */ + fapl = H5Pcreate(H5P_FILE_ACCESS); + CHECK(fapl, FAIL, "H5Pcreate"); + + /* Create dataspace */ + dim[0] = 10; + space = H5Screate_simple(1, dim, NULL); + CHECK(space, FAIL, "H5Screate"); + + /* Its version should be H5O_SDSPACE_VERSION_1 */ + spacep = (H5S_t *)H5I_object(space); + CHECK(spacep, NULL, "H5I_object"); + VERIFY(spacep->extent.version, H5O_SDSPACE_VERSION_1, "basic dataspace version bound"); + + /* Set high bound to V18 */ + low = H5F_LIBVER_EARLIEST; + high = H5F_LIBVER_V18; + ret = H5Pset_libver_bounds(fapl, low, high); + CHECK(ret, FAIL, "H5Pset_libver_bounds"); + + /* Create the file */ + file = H5Fcreate(VERBFNAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + CHECK(file, FAIL, "H5Fcreate"); + + /* Create a basic dataset */ + dset = H5Dcreate2(file, BASIC_DSET, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (dset > 0) /* dataset created successfully */ + { + /* Get the internal dataspace pointer */ + dset_space = H5Dget_space(dset); + CHECK(dset_space, FAIL, "H5Dget_space"); + spacep = (H5S_t *)H5I_object(dset_space); + CHECK(spacep, NULL, "H5I_object"); + + /* Dataspace version should remain as H5O_SDSPACE_VERSION_1 */ + VERIFY(spacep->extent.version, H5O_SDSPACE_VERSION_1, "basic dataspace version bound"); + + /* Close dataspace */ + ret = H5Sclose(dset_space); + CHECK(ret, FAIL, "H5Sclose"); + } + + /* Close basic dataset and the file */ + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + ret = H5Fclose(file); + CHECK(ret, FAIL, "H5Fclose"); + + /* Set low and high bounds to latest to trigger the increment of the + dataspace version */ + low = H5F_LIBVER_LATEST; + high = H5F_LIBVER_LATEST; + ret = H5Pset_libver_bounds(fapl, low, high); + CHECK(ret, FAIL, "H5Pset_libver_bounds"); + + /* Reopen the file with new version bounds, LATEST/LATEST */ + file = H5Fopen(VERBFNAME, H5F_ACC_RDWR, fapl); + + /* Create another dataset using the same dspace as the previous dataset */ + dset = H5Dcreate2(file, LATEST_DSET, H5T_NATIVE_INT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + CHECK(dset, FAIL, "H5Dcreate2"); + + /* Dataset created successfully. Verify that dataspace version has been + upgraded per the low bound */ + + /* Get the internal dataspace pointer */ + dset_space = H5Dget_space(dset); + CHECK(dset_space, FAIL, "H5Dget_space"); + spacep = (H5S_t *)H5I_object(dset_space); + CHECK(spacep, NULL, "H5I_object"); + + /* Verify the dataspace version */ + VERIFY(spacep->extent.version, H5O_sdspace_ver_bounds[low], "upgraded dataspace version"); + + /* Close everything */ + ret = H5Sclose(dset_space); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Dclose(dset); + CHECK(ret, FAIL, "H5Dclose"); + + ret = H5Sclose(space); + CHECK(ret, FAIL, "H5Sclose"); + ret = H5Pclose(fapl); + CHECK(ret, FAIL, "H5Pclose"); + ret = H5Fclose(file); + CHECK(ret, FAIL, "H5Fclose"); +} /* end test_versionbounds() */ + + /**************************************************************** ** ** test_h5s_encode_regular_exceed32(): @@ -2560,11 +2699,10 @@ test_h5s(void) /* Output message about test being performed */ MESSAGE(5, ("Testing Dataspaces\n")); - test_h5s_basic(); /* Test basic H5S code */ - test_h5s_null(); /* Test Null dataspace H5S code */ + test_h5s_basic(); /* Test basic H5S code */ + test_h5s_null(); /* Test Null dataspace H5S code */ test_h5s_zero_dim(); /* Test dataspace with zero dimension size */ test_h5s_encode(); /* Test encoding and decoding */ - test_h5s_encode_regular_exceed32(); /* Test encoding regular hyperslab selection that exceeds 32 bits */ test_h5s_encode_irregular_exceed32(); /* Testing encoding irregular hyperslab selection that exceeds 32 bits */ test_h5s_encode_points_exceed32(); /* Testing encoding point selection that exceeds 32 bits */ @@ -2572,26 +2710,27 @@ test_h5s(void) test_h5s_scalar_write(); /* Test scalar H5S writing code */ test_h5s_scalar_read(); /* Test scalar H5S reading code */ - test_h5s_compound_scalar_write(); /* Test compound datatype scalar H5S writing code */ - test_h5s_compound_scalar_read(); /* Test compound datatype scalar H5S reading code */ + test_h5s_compound_scalar_write(); /* Test compound datatype scalar H5S writing code */ + test_h5s_compound_scalar_read(); /* Test compound datatype scalar H5S reading code */ /* This test was added later to exercise a bug in chunked I/O */ - test_h5s_chunk(); /* Exercise bug fix for chunked I/O */ + test_h5s_chunk(); /* Exercise bug fix for chunked I/O */ - test_h5s_extent_equal(); /* Test extent comparison code */ + test_h5s_extent_equal(); /* Test extent comparison code */ test_h5s_extent_copy(); /* Test extent copy code */ test_h5s_bug1(); /* Test bug in offset initialization */ + test_versionbounds(); /* Test version bounds with dataspace */ } /* test_h5s() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_h5s + * Function: cleanup_h5s * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * July 2, 1998 * * Modifications: @@ -2605,4 +2744,5 @@ cleanup_h5s(void) remove(NULLFILE); remove(BASICFILE); remove(ZEROFILE); + remove(VERBFNAME); } @@ -16,7 +16,7 @@ #include "testhdf5.h" /* Include H5Ipkg.h to calculate max number of groups */ -#define H5I_FRIEND /*suppress error about including H5Ipkg */ +#define H5I_FRIEND /*suppress error about including H5Ipkg */ #include "H5Ipkg.h" /* Test basic functionality of registering and deleting types and IDs */ @@ -237,97 +237,97 @@ out: } - /* A dummy search function for the next test */ + /* A dummy search function for the next test */ static int test_search_func(void H5_ATTR_UNUSED * ptr1, void H5_ATTR_UNUSED * ptr2) { return 0; } - /* Ensure that public functions cannot access "predefined" ID types */ + /* Ensure that public functions cannot access "predefined" ID types */ static int id_predefined_test(void ) { - void * testObj; - hid_t testID; - hid_t typeID = H5I_INVALID_HID; - void * testPtr; - herr_t testErr; + void * testObj; + hid_t testID; + hid_t typeID = H5I_INVALID_HID; + void * testPtr; + herr_t testErr; - testObj = HDmalloc(sizeof(int)); + testObj = HDmalloc(sizeof(int)); - /* Try to perform illegal functions on various predefined types */ - H5E_BEGIN_TRY - testID = H5Iregister(H5I_FILE, testObj); - H5E_END_TRY + /* Try to perform illegal functions on various predefined types */ + H5E_BEGIN_TRY + testID = H5Iregister(H5I_FILE, testObj); + H5E_END_TRY - VERIFY(testID, H5I_INVALID_HID, "H5Iregister"); - if(testID != H5I_INVALID_HID) - goto out; + VERIFY(testID, H5I_INVALID_HID, "H5Iregister"); + if(testID != H5I_INVALID_HID) + goto out; - H5E_BEGIN_TRY - testPtr = H5Isearch(H5I_GENPROP_LST, (H5I_search_func_t) test_search_func, testObj); - H5E_END_TRY + H5E_BEGIN_TRY + testPtr = H5Isearch(H5I_GENPROP_LST, (H5I_search_func_t) test_search_func, testObj); + H5E_END_TRY - CHECK_PTR_NULL(testPtr, "H5Isearch"); - if(testPtr != NULL) - goto out; + CHECK_PTR_NULL(testPtr, "H5Isearch"); + if(testPtr != NULL) + goto out; - H5E_BEGIN_TRY - testErr = H5Inmembers(H5I_ERROR_STACK, NULL); - H5E_END_TRY + H5E_BEGIN_TRY + testErr = H5Inmembers(H5I_ERROR_STACK, NULL); + H5E_END_TRY - VERIFY(testErr, -1, "H5Inmembers"); - if(testErr != -1) - goto out; + VERIFY(testErr, -1, "H5Inmembers"); + if(testErr != -1) + goto out; - H5E_BEGIN_TRY - testErr = H5Iclear_type(H5I_FILE, 0); - H5E_END_TRY + H5E_BEGIN_TRY + testErr = H5Iclear_type(H5I_FILE, 0); + H5E_END_TRY - VERIFY((testErr >= 0), 0, "H5Iclear_type"); - if(testErr >= 0) - goto out; + VERIFY((testErr >= 0), 0, "H5Iclear_type"); + if(testErr >= 0) + goto out; - H5E_BEGIN_TRY - testErr = H5Idestroy_type(H5I_DATASET); - H5E_END_TRY + H5E_BEGIN_TRY + testErr = H5Idestroy_type(H5I_DATASET); + H5E_END_TRY - VERIFY((testErr >= 0), 0, "H5Idestroy_type"); - if(testErr >= 0) - goto out; + VERIFY((testErr >= 0), 0, "H5Idestroy_type"); + if(testErr >= 0) + goto out; - /* Create a datatype ID and try to perform illegal functions on it */ - typeID = H5Tcreate(H5T_OPAQUE, (size_t)42); - CHECK(typeID, H5I_INVALID_HID, "H5Tcreate"); - if(typeID == H5I_INVALID_HID) - goto out; + /* Create a datatype ID and try to perform illegal functions on it */ + typeID = H5Tcreate(H5T_OPAQUE, (size_t)42); + CHECK(typeID, H5I_INVALID_HID, "H5Tcreate"); + if(typeID == H5I_INVALID_HID) + goto out; - H5E_BEGIN_TRY - testPtr = H5Iremove_verify(typeID, H5I_DATATYPE); - H5E_END_TRY + H5E_BEGIN_TRY + testPtr = H5Iremove_verify(typeID, H5I_DATATYPE); + H5E_END_TRY - CHECK_PTR_NULL(testPtr, "H5Iremove_verify"); - if(testPtr != NULL) - goto out; + CHECK_PTR_NULL(testPtr, "H5Iremove_verify"); + if(testPtr != NULL) + goto out; - H5E_BEGIN_TRY - testPtr = H5Iobject_verify(typeID, H5I_DATATYPE); - H5E_END_TRY + H5E_BEGIN_TRY + testPtr = H5Iobject_verify(typeID, H5I_DATATYPE); + H5E_END_TRY - CHECK_PTR_NULL(testPtr, "H5Iobject_verify"); - if(testPtr != NULL) - goto out; + CHECK_PTR_NULL(testPtr, "H5Iobject_verify"); + if(testPtr != NULL) + goto out; - H5Tclose(typeID); + H5Tclose(typeID); - /* testObj was never registered as an atom, so it will not be + /* testObj was never registered as an atom, so it will not be * automatically freed. */ - HDfree(testObj); - return 0; + HDfree(testObj); + return 0; out: - if(typeID != H5I_INVALID_HID) - H5Tclose(typeID); + if(typeID != H5I_INVALID_HID) + H5Tclose(typeID); if(testObj != NULL) - HDfree(testObj); + HDfree(testObj); - return -1; + return -1; } @@ -443,12 +443,12 @@ static int test_get_type(void) out: if(dtype != H5I_INVALID_HID) - H5Tclose(dtype); + H5Tclose(dtype); return -1; } - /* Test boundary cases with lots of types */ + /* Test boundary cases with lots of types */ /* Type IDs range from H5I_NTYPES to H5I_MAX_NUM_TYPES. The system will assign */ /* IDs in sequential order until H5I_MAX_NUM_TYPES IDs have been given out, at which */ @@ -458,78 +458,78 @@ out: /* to low values successfully, ensure that an error is thrown when all possible */ /* type IDs are taken, then ensure that deleting types frees up their IDs. */ /* Note that this test depends on the implementation of IDs, so may break */ -/* if the implementation changes. */ +/* if the implementation changes. */ /* Also note that if someone else registered a user-defined type and forgot to */ /* destroy it, this test will mysteriously fail (because it will expect there to */ /* be one more "free" type ID than there is). */ /* H5I_NTYPES is defined in h5public.h, H5I_MAX_NUM_TYPES is defined in h5pkg.h */ static int test_id_type_list(void) { - H5I_type_t startType; /* The first type ID we were assigned in this test */ - H5I_type_t currentType; - H5I_type_t testType; - int i; /* Just a counter variable */ - - startType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); - CHECK(startType, H5I_BADID, "H5Iregister_type"); - if(startType == H5I_BADID) - goto out; - - /* Sanity check */ - if(startType >= H5I_MAX_NUM_TYPES || startType < H5I_NTYPES) - { - /* Error condition, throw an error */ - CHECK(1, 1, "H5Iregister_type"); - goto out; - } - /* Create types up to H5I_MAX_NUM_TYPES */ - for(i = startType + 1; i < H5I_MAX_NUM_TYPES; i++) - { - currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); - CHECK(currentType, H5I_BADID, "H5Iregister_type"); - if(currentType == H5I_BADID) - goto out; - } - - /* Wrap around to low type ID numbers */ - for(i = H5I_NTYPES; i < startType; i++) - { - currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); - CHECK(currentType, H5I_BADID, "H5Iregister_type"); - if(currentType == H5I_BADID) - goto out; - } - - /* There should be no room at the inn for a new ID type*/ - H5E_BEGIN_TRY - testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); - H5E_END_TRY - - VERIFY(testType, H5I_BADID, "H5Iregister_type"); - if(testType != H5I_BADID) - goto out; - - /* Now delete a type and try to insert again */ - H5Idestroy_type(H5I_NTYPES); - testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); - - VERIFY(testType, H5I_NTYPES, "H5Iregister_type"); - if(testType != H5I_NTYPES) - goto out; - - /* Cleanup. Destroy all types. */ - for(i = H5I_NTYPES; i < H5I_MAX_NUM_TYPES; i++) - H5Idestroy_type((H5I_type_t) i); - - return 0; + H5I_type_t startType; /* The first type ID we were assigned in this test */ + H5I_type_t currentType; + H5I_type_t testType; + int i; /* Just a counter variable */ + + startType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); + CHECK(startType, H5I_BADID, "H5Iregister_type"); + if(startType == H5I_BADID) + goto out; + + /* Sanity check */ + if(startType >= H5I_MAX_NUM_TYPES || startType < H5I_NTYPES) + { + /* Error condition, throw an error */ + CHECK(1, 1, "H5Iregister_type"); + goto out; + } + /* Create types up to H5I_MAX_NUM_TYPES */ + for(i = startType + 1; i < H5I_MAX_NUM_TYPES; i++) + { + currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); + CHECK(currentType, H5I_BADID, "H5Iregister_type"); + if(currentType == H5I_BADID) + goto out; + } + + /* Wrap around to low type ID numbers */ + for(i = H5I_NTYPES; i < startType; i++) + { + currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); + CHECK(currentType, H5I_BADID, "H5Iregister_type"); + if(currentType == H5I_BADID) + goto out; + } + + /* There should be no room at the inn for a new ID type*/ + H5E_BEGIN_TRY + testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); + H5E_END_TRY + + VERIFY(testType, H5I_BADID, "H5Iregister_type"); + if(testType != H5I_BADID) + goto out; + + /* Now delete a type and try to insert again */ + H5Idestroy_type(H5I_NTYPES); + testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); + + VERIFY(testType, H5I_NTYPES, "H5Iregister_type"); + if(testType != H5I_NTYPES) + goto out; + + /* Cleanup. Destroy all types. */ + for(i = H5I_NTYPES; i < H5I_MAX_NUM_TYPES; i++) + H5Idestroy_type((H5I_type_t) i); + + return 0; out: /* Cleanup. For simplicity, just destroy all types and ignore errors. */ - H5E_BEGIN_TRY - for(i = H5I_NTYPES; i < H5I_MAX_NUM_TYPES; i++) - H5Idestroy_type((H5I_type_t) i); - H5E_END_TRY - return -1; + H5E_BEGIN_TRY + for(i = H5I_NTYPES; i < H5I_MAX_NUM_TYPES; i++) + H5Idestroy_type((H5I_type_t) i); + H5E_END_TRY + return -1; } /* Test removing ids in callback for H5Iclear_type */ @@ -732,11 +732,11 @@ void test_ids(void) /* Set the random # seed */ HDsrandom((unsigned)HDtime(NULL)); - if (basic_id_test() < 0) TestErrPrintf("Basic ID test failed\n"); - if (id_predefined_test() < 0) TestErrPrintf("Predefined ID type test failed\n"); - if (test_is_valid() < 0) TestErrPrintf("H5Iis_valid test failed\n"); - if (test_get_type() < 0) TestErrPrintf("H5Iget_type test failed\n"); - if (test_id_type_list() < 0) TestErrPrintf("ID type list test failed\n"); - if (test_remove_clear_type() < 0) TestErrPrintf("ID remove during H5Iclear_type test failed\n"); + if (basic_id_test() < 0) TestErrPrintf("Basic ID test failed\n"); + if (id_predefined_test() < 0) TestErrPrintf("Predefined ID type test failed\n"); + if (test_is_valid() < 0) TestErrPrintf("H5Iis_valid test failed\n"); + if (test_get_type() < 0) TestErrPrintf("H5Iget_type test failed\n"); + if (test_id_type_list() < 0) TestErrPrintf("ID type list test failed\n"); + if (test_remove_clear_type() < 0) TestErrPrintf("ID remove during H5Iclear_type test failed\n"); } diff --git a/test/titerate.c b/test/titerate.c index 98588f9..82c26eb 100644 --- a/test/titerate.c +++ b/test/titerate.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: titerate +* Test program: titerate * * Test the Group & Attribute functionality * @@ -36,8 +36,8 @@ #define NAMELEN 80 /* 1-D dataset with fixed dimensions */ -#define SPACE1_RANK 1 -#define SPACE1_DIM1 4 +#define SPACE1_RANK 1 +#define SPACE1_DIM1 4 typedef enum { RET_ZERO, @@ -129,7 +129,7 @@ test_iter_group(hid_t fapl, hbool_t new_format) char dataset_name[NAMELEN]; /* dataset name */ iter_info info; /* Custom iteration information */ H5G_info_t ginfo; /* Buffer for querying object's info */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Group Iteration Functionality\n")); @@ -388,7 +388,7 @@ static void test_iter_attr(hid_t fapl, hbool_t new_format) char name[NAMELEN]; /* temporary name buffer */ char *anames[NATTR]; /* Names of the attributes created */ iter_info info; /* Custom iteration information */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Attribute Iteration Functionality\n")); @@ -543,7 +543,7 @@ liter_cb2(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_ { const iter_info *test_info = (const iter_info *)opdata; H5O_info_t oinfo; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ if(HDstrcmp(name, test_info->name)) { TestErrPrintf("name = '%s', test_info = '%s'\n", name, test_info->name); @@ -573,13 +573,13 @@ liter_cb2(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR_UNUSED *link_ static void test_iter_group_large(hid_t fapl) { - hid_t file; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t group; /* Group ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid; /* Datatype ID */ - hsize_t dims[] = {SPACE1_DIM1}; - herr_t ret; /* Generic return value */ + hid_t file; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t group; /* Group ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hsize_t dims[] = {SPACE1_DIM1}; + herr_t ret; /* Generic return value */ char gname[20]; /* Temporary group name */ iter_info *names; /* Names of objects in the root group */ iter_info *curr_name; /* Pointer to the current name in the root group */ @@ -709,7 +709,7 @@ static void test_grp_memb_funcs(hid_t fapl) char dataset_name[NAMELEN]; /* dataset name */ ssize_t name_len; /* Length of object's name */ H5G_info_t ginfo; /* Buffer for querying object's info */ - herr_t ret = SUCCEED; /* Generic return value */ + herr_t ret = SUCCEED; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Group Member Information Functionality\n")); @@ -849,7 +849,7 @@ static void test_links(hid_t fapl) hid_t gid, gid1; H5G_info_t ginfo; /* Buffer for querying object's info */ hsize_t i; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Soft and Hard Link Iteration Functionality\n")); @@ -925,7 +925,7 @@ test_iterate(void) { hid_t fapl, fapl2; /* File access property lists */ unsigned new_format; /* Whether to use the new format or not */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Iteration Operations\n")); @@ -958,15 +958,15 @@ test_iterate(void) CHECK(ret, FAIL, "H5Pclose"); } /* test_iterate() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_iterate + * Function: cleanup_iterate * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * April 5, 2000 * * Modifications: diff --git a/test/tmisc.c b/test/tmisc.c index 5825656..4a77b51 100644 --- a/test/tmisc.c +++ b/test/tmisc.c @@ -21,7 +21,7 @@ * *************************************************************/ -#define H5D_FRIEND /*suppress error about including H5Dpkg */ +#define H5D_FRIEND /*suppress error about including H5Dpkg */ /* Define this macro to indicate that the testing APIs should be available */ #define H5D_TESTING @@ -1815,11 +1815,11 @@ test_misc11(void) unsigned sym_ik; /* Symbol table B-tree initial 'K' value */ unsigned istore_ik; /* Indexed storage B-tree initial 'K' value */ unsigned sym_lk; /* Symbol table B-tree leaf 'K' value */ - unsigned nindexes; /* Shared message number of indexes */ + unsigned nindexes; /* Shared message number of indexes */ H5F_info2_t finfo; /* global information about file */ H5F_fspace_strategy_t strategy; /* File space strategy */ - hsize_t threshold; /* Free-space section threshold */ - hbool_t persist; /* To persist free-space or not */ + hsize_t threshold; /* Free-space section threshold */ + hbool_t persist; /* To persist free-space or not */ herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1858,7 +1858,7 @@ test_misc11(void) /* This should fail as (32770*2) will exceed ^16 - 2 bytes for storing btree entries */ H5E_BEGIN_TRY { - ret=H5Pset_sym_k(fcpl, 32770, 0); + ret=H5Pset_sym_k(fcpl, 32770, 0); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Pset_sym_k"); @@ -1867,7 +1867,7 @@ test_misc11(void) /* This should fail as (32770*2) will exceed ^16 - 2 bytes for storing btree entries */ H5E_BEGIN_TRY { - ret=H5Pset_istore_k(fcpl, 32770); + ret=H5Pset_istore_k(fcpl, 32770); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Pset_istore_k"); @@ -1979,19 +1979,19 @@ test_misc12(void) "las palabras del que murio en la cruz." }; char *rdata [MISC12_SPACE1_DIM1+MISC12_APPEND_SIZE]; /* Information read in */ - hid_t fid1; - hid_t dataset; - hid_t sid1, space, memspace; - hid_t tid1, cparms; - hsize_t dims1[] = {MISC12_SPACE1_DIM1}; - hsize_t dimsn[] = {MISC12_APPEND_SIZE}; - hsize_t maxdims1[1] = {H5S_UNLIMITED}; - hsize_t chkdims1[1] = {MISC12_CHUNK_SIZE}; + hid_t fid1; + hid_t dataset; + hid_t sid1, space, memspace; + hid_t tid1, cparms; + hsize_t dims1[] = {MISC12_SPACE1_DIM1}; + hsize_t dimsn[] = {MISC12_APPEND_SIZE}; + hsize_t maxdims1[1] = {H5S_UNLIMITED}; + hsize_t chkdims1[1] = {MISC12_CHUNK_SIZE}; hsize_t newsize[1] = {MISC12_SPACE1_DIM1+MISC12_APPEND_SIZE}; - hsize_t offset[1] = {MISC12_SPACE1_DIM1}; + hsize_t offset[1] = {MISC12_SPACE1_DIM1}; hsize_t count[1] = {MISC12_APPEND_SIZE}; int i; /* counting variable */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing VL-type in chunked dataset\n")); @@ -2745,10 +2745,10 @@ test_misc16(void) herr_t ret; /* Generic return value */ char wdata[MISC16_SPACE_DIM][MISC16_STR_SIZE]; char rdata[MISC16_SPACE_DIM][MISC16_STR_SIZE]; /* Information read in */ - hid_t dataset; /* Dataset ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid; /* Datatype ID */ - hsize_t dims[] = {MISC16_SPACE_DIM}; + hid_t dataset; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hsize_t dims[] = {MISC16_SPACE_DIM}; int i; /* Initialize the data */ @@ -2830,10 +2830,10 @@ test_misc17(void) herr_t ret; /* Generic return value */ char wdata[MISC17_SPACE_DIM1][MISC17_SPACE_DIM2]; char rdata[MISC17_SPACE_DIM1][MISC17_SPACE_DIM2]; /* Information read in */ - hid_t dataset; /* Dataset ID */ - hid_t sid; /* Dataspace ID */ - hid_t tid; /* Datatype ID */ - hsize_t dims[] = {MISC17_SPACE_DIM1, MISC17_SPACE_DIM2}; + hid_t dataset; /* Dataset ID */ + hid_t sid; /* Dataspace ID */ + hid_t tid; /* Datatype ID */ + hsize_t dims[] = {MISC17_SPACE_DIM1, MISC17_SPACE_DIM2}; int i; /* Initialize the data */ @@ -3797,13 +3797,13 @@ test_misc22(void) /* compute the correct PPB that should be set by SZIP */ if(offsets[k] == 0) - correct = prec[j]; + correct = prec[j]; else correct = H5Tget_size(idts[i]) * 8; if(correct > 24) { - if(correct <= 32) + if(correct <= 32) correct = 32; - else if(correct <= 64) + else if(correct <= 64) correct = 64; } /* end if */ @@ -4756,7 +4756,7 @@ test_misc25b(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_misc25b() */ - + /**************************************************************** ** ** test_misc25c(): Exercise another null object header message merge bug. @@ -4890,7 +4890,7 @@ test_misc25c(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_misc25c() */ - + /**************************************************************** ** ** test_misc26(): Regression test: ensure that copying filter @@ -4976,7 +4976,7 @@ test_misc26(void) CHECK_I(ret, "H5Pclose"); } - + /**************************************************************** ** ** test_misc27(): Ensure that objects with incorrect # of object @@ -5021,7 +5021,7 @@ test_misc27(void) CHECK(ret, FAIL, "H5Fclose"); } /* end test_misc27() */ - + /**************************************************************** ** ** test_misc28(): Ensure that the dataset chunk cache will hold @@ -5198,7 +5198,7 @@ test_misc28(void) CHECK_I(ret, "H5Pclose"); } /* end test_misc28() */ - + /**************************************************************** ** ** test_misc29(): Ensure that speculative metadata reads don't @@ -5238,7 +5238,7 @@ test_misc30_get_info_cb(hid_t loc_id, const char *name, const H5L_info_t H5_ATTR { H5O_info_t object_info; - return H5Oget_info_by_name(loc_id, name, &object_info, H5P_DEFAULT); + return H5Oget_info_by_name(loc_id, name, &object_info, H5P_DEFAULT); } static int @@ -5247,7 +5247,7 @@ test_misc30_get_info(hid_t loc_id) return H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, test_misc30_get_info_cb, NULL); } - + /**************************************************************** ** ** test_misc30(): Exercise local heap code that loads prefix @@ -5279,15 +5279,15 @@ test_misc30(void) CHECK(ret, FAIL, "H5Gclose"); ret = H5Fclose(fid); CHECK(ret, FAIL, "H5Fclose"); - + for(i = 0; i < 20; i++) { char gname[32]; fid = H5Fopen(MISC30_FILE, H5F_ACC_RDWR, H5P_DEFAULT); CHECK(fid, FAIL, "H5Fopen"); - + if(get_info) { - ret = test_misc30_get_info(fid); + ret = test_misc30_get_info(fid); CHECK(ret, FAIL, "test_misc30_get_info"); } @@ -5299,20 +5299,20 @@ test_misc30(void) CHECK(ret, FAIL, "H5Gclose"); ret = H5Fclose(fid); CHECK(ret, FAIL, "H5Fclose"); - } - + } + fid = H5Fopen(MISC30_FILE, H5F_ACC_RDONLY, H5P_DEFAULT); CHECK(fid, FAIL, "H5Fopen"); ret = H5Fget_filesize(fid, &file_size[get_info]); CHECK(fid, FAIL, "H5Fget_filesize"); ret = H5Fclose(fid); CHECK(ret, FAIL, "H5Fclose"); - } - + } + VERIFY(file_size[0], file_size[1], "test_misc30"); } /* end test_misc30() */ - + /**************************************************************** ** ** test_misc31(): Test reentering library through deprecated @@ -5403,14 +5403,14 @@ test_misc31(void) CHECK(ret, FAIL, "H5Fclose"); ret = H5Tclose(dtype_id); CHECK(ret, FAIL, "H5Tclose"); - + #else /* H5_NO_DEPRECATED_SYMBOLS */ /* Output message about test being skipped */ MESSAGE(5, (" ...Skipped")); #endif /* H5_NO_DEPRECATED_SYMBOLS */ } /* end test_misc31() */ - + /**************************************************************** * * test_misc32(): Simple test of filter memory allocation @@ -5474,7 +5474,7 @@ test_misc32(void) resized = H5resize_memory(NULL, 0); CHECK_PTR_NULL(resized, "H5resize_memory"); /*BAD*/ #endif /* NDEBUG */ - + } /* end test_misc32() */ /**************************************************************** @@ -5584,7 +5584,7 @@ test_misc34(void) } /* end test_misc34() */ - + /**************************************************************** ** ** test_misc(): Main misc. test routine. @@ -5637,15 +5637,15 @@ test_misc(void) } /* test_misc() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_misc + * Function: cleanup_misc * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * July 2, 1998 * * Modifications: diff --git a/test/trefer.c b/test/trefer.c index ec9428f..55172c0 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: trefer +* Test program: trefer * * Test the Reference functionality * @@ -22,21 +22,21 @@ #include "testhdf5.h" #define FILE1 "trefer1.h5" -#define FILE2 "trefer2.h5" -#define FILE3 "trefer3.h5" +#define FILE2 "trefer2.h5" +#define FILE3 "trefer3.h5" /* 1-D dataset with fixed dimensions */ -#define SPACE1_RANK 1 -#define SPACE1_DIM1 4 +#define SPACE1_RANK 1 +#define SPACE1_DIM1 4 /* 2-D dataset with fixed dimensions */ -#define SPACE2_RANK 2 -#define SPACE2_DIM1 10 -#define SPACE2_DIM2 10 +#define SPACE2_RANK 2 +#define SPACE2_DIM1 10 +#define SPACE2_DIM2 10 /* Larger 1-D dataset with fixed dimensions */ -#define SPACE3_RANK 1 -#define SPACE3_DIM1 100 +#define SPACE3_RANK 1 +#define SPACE3_DIM1 100 /* Element selection information */ #define POINT1_NPOINTS 10 @@ -79,7 +79,7 @@ test_reference_params(void) unsigned *tu32; /* Temporary pointer to uint32 data */ int i; /* counting variables */ const char *write_comment = "Foo!"; /* Comments for group */ - hid_t ret_id; /* Generic hid_t return value */ + hid_t ret_id; /* Generic hid_t return value */ ssize_t name_size; /* Size of reference name */ herr_t ret; /* Generic return value */ @@ -102,7 +102,7 @@ test_reference_params(void) /* Create dataset access property list */ dapl_id = H5Pcreate(H5P_DATASET_ACCESS); CHECK(dapl_id, FAIL, "H5Pcreate"); - + /* Create a group */ group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate2"); @@ -245,13 +245,13 @@ test_reference_params(void) static void test_reference_obj(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset, /* Dataset ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, /* Dataset ID */ dset2; /* Dereferenced dataset ID */ - hid_t group; /* Group ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hid_t group; /* Group ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hsize_t dims1[] = {SPACE1_DIM1}; hid_t dapl_id; /* Dataset access property list */ hobj_ref_t *wbuf, /* buffer to write to disk */ *rbuf, /* buffer read from disk */ @@ -263,7 +263,7 @@ test_reference_obj(void) char read_comment[10]; H5O_type_t obj_type; /* Object type */ ssize_t size; /* Comment length */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Object Reference Functions\n")); @@ -284,7 +284,7 @@ test_reference_obj(void) /* Create dataset access property list */ dapl_id = H5Pcreate(H5P_DATASET_ACCESS); CHECK(dapl_id, FAIL, "H5Pcreate"); - + /* Create a group */ group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(group, FAIL, "H5Gcreate2"); @@ -542,7 +542,7 @@ test_reference_region(hbool_t new_format) hdset_reg_ref_t wdata_NA[1], /* Write buffer */ rdata_NA[1]; /* Read buffer */ hsize_t numparticles = 8388608; -hsize_t ret_particles; + hsize_t ret_particles; unsigned num_dsets = 513; hsize_t total_particles = numparticles * num_dsets; hsize_t vdsdims[1] = {total_particles}; @@ -580,7 +580,7 @@ hsize_t ret_particles; /* Create dataset access property list */ dapl_id = H5Pcreate(H5P_DATASET_ACCESS); CHECK(dapl_id, FAIL, "H5Pcreate"); - + /* Create a dataset */ dset2 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(dset2, FAIL, "H5Dcreate2"); @@ -716,7 +716,7 @@ hsize_t ret_particles; /* Close and release resources for undefined region reference tests */ ret = H5Dclose(dset_NA); CHECK(ret, FAIL, "H5Dclose"); - ret = H5Sclose(space_NA); + ret = H5Sclose(space_NA); CHECK(ret, FAIL, "H5Sclose"); /* Close disk dataspace */ @@ -742,10 +742,10 @@ hsize_t ret_particles; fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, H5P_DEFAULT); CHECK(fid1, FAIL, "H5Fopen"); - /* - * Start the test of an undefined reference + /* + * Start the test of an undefined reference */ - + /* Open the dataset of the undefined references */ dset_NA = H5Dopen2(fid1, "DS_NA", H5P_DEFAULT); CHECK(dset_NA, FAIL, "H5Dopen2"); @@ -753,28 +753,28 @@ hsize_t ret_particles; /* Read the data */ ret = H5Dread(dset_NA, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata_NA); CHECK(ret, FAIL, "H5Dread"); - + /* * Dereference an undefined reference (should fail) */ H5E_BEGIN_TRY { dset2 = H5Rdereference2(dset_NA, H5P_DEFAULT, H5R_DATASET_REGION, &rdata_NA[0]); - } H5E_END_TRY; - VERIFY(dset2, FAIL, "H5Rdereference2"); + } H5E_END_TRY; + VERIFY(dset2, FAIL, "H5Rdereference2"); /* Close and release resources. */ ret = H5Dclose(dset_NA); CHECK(ret, FAIL, "H5Dclose"); - /* This close should fail since H5Rdereference2 never created + /* This close should fail since H5Rdereference2 never created * the id of the referenced object. */ H5E_BEGIN_TRY { ret = H5Dclose(dset2); - } H5E_END_TRY; - VERIFY(ret, FAIL, "H5Dclose"); + } H5E_END_TRY; + VERIFY(ret, FAIL, "H5Dclose"); - /* - * End the test of an undefined reference + /* + * End the test of an undefined reference */ /* Open the dataset */ @@ -975,31 +975,30 @@ hsize_t ret_particles; static void test_reference_region_1D(hbool_t new_format) { - hid_t fid1; /* HDF5 File IDs */ - hid_t fapl = -1; /* File acess property list */ - hid_t dset1, /* Dataset ID */ - dset3; /* Dereferenced dataset ID */ - hid_t sid1, /* Dataspace ID #1 */ - sid3; /* Dataspace ID #3 */ - hid_t dapl_id; /* Dataset access property list */ - hsize_t dims1[] = {SPACE1_DIM1}, - dims3[] = {SPACE3_DIM1}; - hsize_t start[SPACE3_RANK]; /* Starting location of hyperslab */ - hsize_t stride[SPACE3_RANK]; /* Stride of hyperslab */ - hsize_t count[SPACE3_RANK]; /* Element count of hyperslab */ - hsize_t block[SPACE3_RANK]; /* Block size of hyperslab */ - hsize_t coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */ - hsize_t *coords; /* Coordinate buffer */ - hsize_t low[SPACE3_RANK]; /* Selection bounds */ - hsize_t high[SPACE3_RANK]; /* Selection bounds */ - hdset_reg_ref_t *wbuf, /* buffer to write to disk */ - *rbuf; /* buffer read from disk */ - uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ - *drbuf; /* Buffer for reading numeric data from disk */ - uint8_t *tu8; /* Temporary pointer to uint8 data */ - H5O_type_t obj_type; /* Object type */ - int i; /* counting variables */ - herr_t ret; /* Generic return value */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dset1, /* Dataset ID */ + dset3; /* Dereferenced dataset ID */ + hid_t sid1, /* Dataspace ID #1 */ + sid3; /* Dataspace ID #3 */ + hid_t dapl_id; /* Dataset access property list */ + hsize_t dims1[] = {SPACE1_DIM1}, + dims3[] = {SPACE3_DIM1}; + hsize_t start[SPACE3_RANK]; /* Starting location of hyperslab */ + hsize_t stride[SPACE3_RANK]; /* Stride of hyperslab */ + hsize_t count[SPACE3_RANK]; /* Element count of hyperslab */ + hsize_t block[SPACE3_RANK]; /* Block size of hyperslab */ + hsize_t coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */ + hsize_t * coords; /* Coordinate buffer */ + hsize_t low[SPACE3_RANK]; /* Selection bounds */ + hsize_t high[SPACE3_RANK]; /* Selection bounds */ + hdset_reg_ref_t *wbuf, /* buffer to write to disk */ + *rbuf; /* buffer read from disk */ + uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ + *drbuf; /* Buffer for reading numeric data from disk */ + uint8_t *tu8; /* Temporary pointer to uint8 data */ + H5O_type_t obj_type; /* Object type */ + int i; /* counting variables */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing 1-D Dataset Region Reference Functions\n")); @@ -1010,16 +1009,8 @@ test_reference_region_1D(hbool_t new_format) dwbuf = (uint8_t *)HDmalloc(sizeof(uint8_t) * SPACE3_DIM1); drbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1); - /* Set to use the latest file format */ - fapl = H5Pcreate(H5P_FILE_ACCESS); - CHECK(fapl, FAIL, "H5Pcreate"); - if(new_format) { - ret = H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); - CHECK(ret, FAIL, "H5Pset_libver_bounds"); - } - /* Create file */ - fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); CHECK(fid1, FAIL, "H5Fcreate"); /* Create dataspace for datasets */ @@ -1029,7 +1020,7 @@ test_reference_region_1D(hbool_t new_format) /* Create dataset access property list */ dapl_id = H5Pcreate(H5P_DATASET_ACCESS); CHECK(dapl_id, FAIL, "H5Pcreate"); - + /* Create a dataset */ dset3 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); CHECK(dset3, FAIL, "H5Dcreate2"); @@ -1269,14 +1260,14 @@ test_reference_region_1D(hbool_t new_format) static void test_reference_obj_deleted(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset, /* Dataset ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, /* Dataset ID */ dset2; /* Dereferenced dataset ID */ - hid_t sid1; /* Dataspace ID */ + hid_t sid1; /* Dataspace ID */ hobj_ref_t oref; /* Object Reference to test */ H5O_type_t obj_type; /* Object type */ - haddr_t addr = HADDR_UNDEF; /* test for undefined reference */ - herr_t ret; /* Generic return value */ + haddr_t addr = HADDR_UNDEF; /* test for undefined reference */ + herr_t ret; /* Generic return value */ /* Create file */ fid1 = H5Fcreate(FILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -1535,25 +1526,25 @@ test_reference_group(void) static void test_reference_compat(void) { - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset, dset2; /* Dataset ID */ - hid_t group, group2; /* Group ID */ - hid_t sid1, /* Dataspace IDs */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, dset2; /* Dataset ID */ + hid_t group, group2; /* Group ID */ + hid_t sid1, /* Dataspace IDs */ sid2; - hid_t tid1, tid2; /* Datatype ID */ - hsize_t dims1[] = {SPACE1_DIM1}, - dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; - hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ - hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ - hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ - hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ - hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */ + hid_t tid1, tid2; /* Datatype ID */ + hsize_t dims1[] = {SPACE1_DIM1}, + dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; + hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ + hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ + hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ + hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ + hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */ hobj_ref_t *wbuf_obj, /* Buffer to write to disk */ *rbuf_obj; /* Buffer read from disk */ hdset_reg_ref_t *wbuf_reg, /* Buffer to write to disk */ *rbuf_reg; /* Buffer read from disk */ H5G_obj_t obj_type; /* Object type */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Deprecated Object Reference Functions\n")); @@ -1843,15 +1834,15 @@ test_reference(void) } /* test_reference() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_reference + * Function: cleanup_reference * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * September 8, 1998 * * Modifications: diff --git a/test/ttime.c b/test/ttime.c index 0df7422..48c9ba8 100644 --- a/test/ttime.c +++ b/test/ttime.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: ttime +* Test program: ttime * * Test the Time Datatype functionality * @@ -213,15 +213,15 @@ test_time(void) } /* test_time() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_time + * Function: cleanup_time * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * October 19, 2000 * * Modifications: diff --git a/test/tvlstr.c b/test/tvlstr.c index e7593fa..3315d68 100644 --- a/test/tvlstr.c +++ b/test/tvlstr.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: tvlstr +* Test program: tvlstr * * Test the Variable-Length String functionality * @@ -25,8 +25,8 @@ #define DATAFILE2 "tvlstr2.h5" /* 1-D dataset with fixed dimensions */ -#define SPACE1_RANK 1 -#define SPACE1_DIM1 4 +#define SPACE1_RANK 1 +#define SPACE1_DIM1 4 #define VLSTR_TYPE "vl_string_type" @@ -113,17 +113,17 @@ test_vlstrings_basic(void) char *rdata[SPACE1_DIM1]; /* Information read in */ char *wdata2; hid_t dataspace, dataset2; - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims1[] = {SPACE1_DIM1}; hsize_t size; /* Number of bytes which will be used */ unsigned i; /* counting variable */ size_t str_used; /* String data in memory */ size_t mem_used=0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic VL String Functionality\n")); @@ -245,14 +245,14 @@ test_vlstrings_special(void) const char *wdata2[SPACE1_DIM1] = {NULL, NULL, NULL, NULL}; char *rdata[SPACE1_DIM1]; /* Information read in */ char *fill; /* Fill value */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - hid_t dcpl; /* Dataset creation property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hid_t dcpl; /* Dataset creation property list ID */ + hsize_t dims1[] = {SPACE1_DIM1}; unsigned i; /* counting variable */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Special VL Strings\n")); @@ -475,14 +475,14 @@ test_compact_vlstring(void) { const char *wdata[SPACE1_DIM1] = {"one", "two", "three", "four"}; char *rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1; /* Datatype ID */ - hid_t plist; /* Dataset creation property list */ - hsize_t dims1[] = {SPACE1_DIM1}; + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1; /* Datatype ID */ + hid_t plist; /* Dataset creation property list */ + hsize_t dims1[] = {SPACE1_DIM1}; unsigned i; /* counting variable */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing VL Strings in compact dataset\n")); @@ -871,15 +871,15 @@ test_vlstrings(void) test_vl_rewrite(); } /* test_vlstrings() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_vlstrings + * Function: cleanup_vlstrings * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * September 10, 1999 * * Modifications: diff --git a/test/tvltypes.c b/test/tvltypes.c index ef154a2..e5a3d34 100644 --- a/test/tvltypes.c +++ b/test/tvltypes.c @@ -13,7 +13,7 @@ /*********************************************************** * -* Test program: tvltypes +* Test program: tvltypes * * Test the Variable-Length Datatype functionality * @@ -26,18 +26,18 @@ #define FILENAME "tvltypes.h5" /* 1-D dataset with fixed dimensions */ -#define SPACE1_RANK 1 +#define SPACE1_RANK 1 #define SPACE1_DIM1 4 /* 1-D dataset with fixed dimensions */ -#define SPACE3_RANK 1 +#define SPACE3_RANK 1 #define SPACE3_DIM1 128 #define L1_INCM 16 #define L2_INCM 8 #define L3_INCM 3 /* 1-D dataset with fixed dimensions */ -#define SPACE4_RANK 1 +#define SPACE4_RANK 1 #define SPACE4_DIM_SMALL 128 #define SPACE4_DIM_LARGE (H5D_TEMP_BUF_SIZE / 64) @@ -103,7 +103,7 @@ static void test_vltypes_dataset_create(void) { hid_t fid1; /* HDF5 File IDs */ - hid_t dcpl; /* Dataset Property list */ + hid_t dcpl; /* Dataset Property list */ hid_t dataset; /* Dataset ID */ hsize_t dims1[] = {SPACE1_DIM1}; hid_t sid1; /* Dataspace ID */ @@ -135,7 +135,7 @@ test_vltypes_dataset_create(void) /* Create a dataset, supposed to fail */ H5E_BEGIN_TRY { - dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, dcpl, H5P_DEFAULT); + dataset = H5Dcreate2(fid1, "Dataset1", tid1, sid1, H5P_DEFAULT, dcpl, H5P_DEFAULT); } H5E_END_TRY; VERIFY(dataset, FAIL, "H5Dcreate2"); @@ -229,18 +229,18 @@ test_vltypes_vlen_atomic(void) hvl_t wdata2[SPACE1_DIM1]; /* Information to write */ hvl_t rdata[SPACE1_DIM1]; /* Information read in */ hvl_t fill; /* Fill value */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ hid_t sid2; /* ID of bad dataspace (no extent set) */ - hid_t tid1; /* Datatype ID */ + hid_t tid1; /* Datatype ID */ hid_t dcpl_pid; /* Dataset creation property list ID */ hid_t xfer_pid; /* Dataset transfer property list ID */ hsize_t dims1[] = {SPACE1_DIM1}; hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Atomic VL Datatype Functionality\n")); @@ -555,7 +555,7 @@ rewrite_vltypes_vlen_atomic(void) hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - unsigned increment=4; + unsigned increment=4; herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -708,16 +708,16 @@ test_vltypes_vlen_compound(void) } s1; hvl_t wdata[SPACE1_DIM1]; /* Information to write */ hvl_t rdata[SPACE1_DIM1]; /* Information read in */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1, tid2; /* Datatype IDs */ hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims1[] = {SPACE1_DIM1}; hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Basic Compound VL Datatype Functionality\n")); @@ -862,7 +862,7 @@ rewrite_vltypes_vlen_compound(void) hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - unsigned increment=4; + unsigned increment=4; herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1000,14 +1000,14 @@ test_vltypes_compound_vlen_vlen(void) } s1; s1 *wdata; /* data to write */ s1 *rdata; /* data to read */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2, tid3; /* Datatype IDs */ - hsize_t dims1[] = {SPACE3_DIM1}; + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1, tid2, tid3; /* Datatype IDs */ + hsize_t dims1[] = {SPACE3_DIM1}; unsigned i,j,k; /* counting variables */ hvl_t *t1, *t2; /* Temporary pointer to VL information */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n")); @@ -1181,21 +1181,21 @@ test_vltypes_compound_vlstr(void) s1 wdata2[SPACE1_DIM1]; /* data to write */ s1 rdata[SPACE1_DIM1]; /* data to read */ s1 rdata2[SPACE1_DIM1]; /* data to read */ - char str[64] = "a\0"; - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset, dset2; /* Dataset ID */ - hid_t sid1, sid2, filespace, filespace2; /* Dataspace ID */ - hid_t tid1, tid2, tid3, tid4, tid5; /* Datatype IDs */ - hid_t cparms; - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t chunk_dims[] = {SPACE1_DIM1/2}; - hsize_t maxdims[] = {H5S_UNLIMITED}; - hsize_t size[] = {SPACE1_DIM1}; - hsize_t offset[] = {0}; + char str[64] = "a\0"; + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset, dset2; /* Dataset ID */ + hid_t sid1, sid2, filespace, filespace2; /* Dataspace ID */ + hid_t tid1, tid2, tid3, tid4, tid5; /* Datatype IDs */ + hid_t cparms; + hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t chunk_dims[] = {SPACE1_DIM1/2}; + hsize_t maxdims[] = {H5S_UNLIMITED}; + hsize_t size[] = {SPACE1_DIM1}; + hsize_t offset[] = {0}; unsigned i,j; /* counting variables */ s2 *t1, *t2; /* Temporary pointer to VL information */ - int val; - herr_t ret; /* Generic return value */ + int val; + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing VL Datatype of Compound Datatype with VL String Functionality\n")); @@ -1373,10 +1373,10 @@ test_vltypes_compound_vlstr(void) wdata2[i].v.p=(s2*)HDmalloc((i+1)*sizeof(s2)); wdata2[i].v.len=i+1; for(t1=(s2*)(wdata2[i].v).p, j=0; j<i+1; j++, t1++) { - strcat(str, "pp"); - t1->string = (char*)HDmalloc(strlen(str)*sizeof(char)+1); + strcat(str, "pp"); + t1->string = (char*)HDmalloc(strlen(str)*sizeof(char)+1); strcpy(t1->string, str); - t1->color = green; + t1->color = green; } } /* end for */ @@ -1466,17 +1466,17 @@ test_vltypes_compound_vlen_atomic(void) s1 wdata[SPACE1_DIM1]; /* Information to write */ s1 rdata[SPACE1_DIM1]; /* Information read in */ s1 fill; /* Fill value */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1, tid2; /* Datatype IDs */ hid_t xfer_pid; /* Dataset transfer property list ID */ hid_t dcpl_pid; /* Dataset creation property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims1[] = {SPACE1_DIM1}; hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n")); @@ -1670,9 +1670,9 @@ test_vltypes_compound_vlen_atomic(void) /**************************************************************** ** ** rewrite_vltypes_compound_vlen_atomic(): Check memory leak for -** basic VL datatype code. +** basic VL datatype code. ** Check memory leak for compound datatypes with VL datatypes -** of atomic datatypes. +** of atomic datatypes. ** ****************************************************************/ static void @@ -1693,7 +1693,7 @@ rewrite_vltypes_compound_vlen_atomic(void) hsize_t size; /* Number of bytes which will be used */ unsigned i,j; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - unsigned increment=4; + unsigned increment=4; herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -1854,16 +1854,16 @@ test_vltypes_vlen_vlen_atomic(void) hvl_t wdata[SPACE1_DIM1]; /* Information to write */ hvl_t rdata[SPACE1_DIM1]; /* Information read in */ hvl_t *t1, *t2; /* Temporary pointer to VL information */ - hid_t fid1; /* HDF5 File IDs */ - hid_t dataset; /* Dataset ID */ - hid_t sid1; /* Dataspace ID */ - hid_t tid1, tid2; /* Datatype IDs */ + hid_t fid1; /* HDF5 File IDs */ + hid_t dataset; /* Dataset ID */ + hid_t sid1; /* Dataspace ID */ + hid_t tid1, tid2; /* Datatype IDs */ hid_t xfer_pid; /* Dataset transfer property list ID */ - hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims1[] = {SPACE1_DIM1}; hsize_t size; /* Number of bytes which will be used */ unsigned i,j,k; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* Output message about test being performed */ MESSAGE(5, ("Testing VL Datatypes with VL Atomic Datatype Component Functionality\n")); @@ -2048,12 +2048,12 @@ rewrite_longer_vltypes_vlen_vlen_atomic(void) hid_t fid1; /* HDF5 File IDs */ hid_t dataset; /* Dataset ID */ hid_t sid1; /* Dataspace ID */ - hid_t tid2; /* Datatype IDs */ + hid_t tid2; /* Datatype IDs */ hid_t xfer_pid; /* Dataset transfer property list ID */ hsize_t size; /* Number of bytes which will be used */ unsigned i,j,k; /* counting variables */ size_t mem_used=0; /* Memory used during allocation */ - unsigned increment=1; + unsigned increment=1; herr_t ret; /* Generic return value */ /* Output message about test being performed */ @@ -3170,15 +3170,15 @@ test_vltypes(void) /* These next tests use the same file */ test_vltypes_dataset_create(); /* Check dataset of VL when fill value - * won't be rewritten to it.*/ + * won't be rewritten to it.*/ test_vltypes_funcs(); /* Test functions with VL types */ test_vltypes_vlen_atomic(); /* Test VL atomic datatypes */ - rewrite_vltypes_vlen_atomic(); /* Check VL memory leak */ + rewrite_vltypes_vlen_atomic(); /* Check VL memory leak */ test_vltypes_vlen_compound(); /* Test VL compound datatypes */ - rewrite_vltypes_vlen_compound(); /* Check VL memory leak */ + rewrite_vltypes_vlen_compound(); /* Check VL memory leak */ test_vltypes_compound_vlen_atomic(); /* Test compound datatypes with VL atomic components */ - rewrite_vltypes_compound_vlen_atomic();/* Check VL memory leak */ - test_vltypes_vlen_vlen_atomic(); /* Test VL datatype with VL atomic components */ + rewrite_vltypes_compound_vlen_atomic();/* Check VL memory leak */ + test_vltypes_vlen_vlen_atomic(); /* Test VL datatype with VL atomic components */ rewrite_longer_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of longer sequence*/ rewrite_shorter_vltypes_vlen_vlen_atomic(); /*overwrite with VL data of shorted sequence*/ test_vltypes_compound_vlen_vlen();/* Test compound datatypes with VL atomic components */ @@ -3186,15 +3186,15 @@ test_vltypes(void) test_vltypes_fill_value(); /* Test fill value for VL data */ } /* test_vltypes() */ - + /*------------------------------------------------------------------------- - * Function: cleanup_vltypes + * Function: cleanup_vltypes * - * Purpose: Cleanup temporary test files + * Purpose: Cleanup temporary test files * - * Return: none + * Return: none * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * June 8, 1999 * * Modifications: diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt index 3cee808..b1b9ce1 100644 --- a/testpar/CMakeLists.txt +++ b/testpar/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TEST_PAR) #----------------------------------------------------------------------------- diff --git a/testpar/t_cache.c b/testpar/t_cache.c index 0447720..5768e35 100644 --- a/testpar/t_cache.c +++ b/testpar/t_cache.c @@ -18,9 +18,9 @@ #include "testpar.h" -#define H5AC_FRIEND /*suppress error about including H5ACpkg */ -#define H5C_FRIEND /*suppress error about including H5Cpkg */ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5AC_FRIEND /*suppress error about including H5ACpkg */ +#define H5C_FRIEND /*suppress error about including H5Cpkg */ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ #include "H5ACpkg.h" #include "H5Cpkg.h" @@ -32,9 +32,9 @@ #define BASE_ADDR (haddr_t)1024 -int nerrors = 0; -int failures = 0; -hbool_t verbose = TRUE; /* used to control error messages */ +int nerrors = 0; +int failures = 0; +hbool_t verbose = TRUE; /* used to control error messages */ #define NFILENAME 2 #define PARATESTFILE filenames[0] @@ -44,23 +44,23 @@ const char *FILENAME[NFILENAME]={"CacheTestDummy", NULL}; #endif /* !PATH_MAX */ char filenames[NFILENAME][PATH_MAX]; hid_t fapl; /* file access property list */ -haddr_t max_addr = 0; /* used to store the end of - * the address space used by - * the data array (see below). - */ -hbool_t callbacks_verbose = FALSE; /* flag used to control whether - * the callback functions are in - * verbose mode. - */ +haddr_t max_addr = 0; /* used to store the end of + * the address space used by + * the data array (see below). + */ +hbool_t callbacks_verbose = FALSE; /* flag used to control whether + * the callback functions are in + * verbose mode. + */ -int world_mpi_size = -1; -int world_mpi_rank = -1; -int world_server_mpi_rank = -1; -MPI_Comm world_mpi_comm = MPI_COMM_NULL; -int file_mpi_size = -1; -int file_mpi_rank = -1; -MPI_Comm file_mpi_comm = MPI_COMM_NULL; +int world_mpi_size = -1; +int world_mpi_rank = -1; +int world_server_mpi_rank = -1; +MPI_Comm world_mpi_comm = MPI_COMM_NULL; +int file_mpi_size = -1; +int file_mpi_rank = -1; +MPI_Comm file_mpi_comm = MPI_COMM_NULL; /* the following globals are used to maintain rudementary statistics @@ -73,67 +73,67 @@ long datum_destroys = 0; long datum_flushes = 0; long datum_pinned_flushes = 0; long datum_loads = 0; -long global_pins = 0; -long global_dirty_pins = 0; -long local_pins = 0; +long global_pins = 0; +long global_dirty_pins = 0; +long local_pins = 0; /* the following fields are used by the server process only */ -int total_reads = 0; +int total_reads = 0; int total_writes = 0; /***************************************************************************** * struct datum * - * Instances of struct datum are used to store information on entries - * that may be loaded into the cache. The individual fields are - * discussed below: + * Instances of struct datum are used to store information on entries + * that may be loaded into the cache. The individual fields are + * discussed below: * - * header: Instance of H5C_cache_entry_t used by the for its data. - * This field is only used on the file processes, not on the - * server process. + * header: Instance of H5C_cache_entry_t used by the for its data. + * This field is only used on the file processes, not on the + * server process. * - * This field MUST be the first entry in this structure. + * This field MUST be the first entry in this structure. * - * base_addr: Base address of the entry. + * base_addr: Base address of the entry. * - * len: Length of the entry. + * len: Length of the entry. * - * local_len: Length of the entry according to the cache. This - * value must be positive, and may not be larger than len. + * local_len: Length of the entry according to the cache. This + * value must be positive, and may not be larger than len. * - * The field exists to allow us change the sizes of entries - * in the cache without upsetting the server. This value - * is only used locally, and is never sent to the server. + * The field exists to allow us change the sizes of entries + * in the cache without upsetting the server. This value + * is only used locally, and is never sent to the server. * - * ver: Version number of the entry. This number is initialize - * to zero, and incremented each time the entry is modified. + * ver: Version number of the entry. This number is initialize + * to zero, and incremented each time the entry is modified. * - * dirty: Boolean flag indicating whether the entry is dirty. + * dirty: Boolean flag indicating whether the entry is dirty. * - * For current purposes, an entry is clean until it is - * modified, and dirty until written to the server (cache - * on process 0) or until it is marked clean (all other - * caches). + * For current purposes, an entry is clean until it is + * modified, and dirty until written to the server (cache + * on process 0) or until it is marked clean (all other + * caches). * - * valid: Boolean flag indicating whether the entry contains - * valid data. Attempts to read an entry whose valid - * flag is not set should trigger an error. + * valid: Boolean flag indicating whether the entry contains + * valid data. Attempts to read an entry whose valid + * flag is not set should trigger an error. * - * locked: Boolean flag that is set to true iff the entry is in - * the cache and locked. + * locked: Boolean flag that is set to true iff the entry is in + * the cache and locked. * - * global_pinned: Boolean flag that is set to true iff the entry has - * been pinned collectively in all caches. Since writes must - * be collective across all processes, only entries pinned - * in this fashion may be marked dirty. + * global_pinned: Boolean flag that is set to true iff the entry has + * been pinned collectively in all caches. Since writes must + * be collective across all processes, only entries pinned + * in this fashion may be marked dirty. * - * local_pinned: Boolean flag that is set to true iff the entry - * has been pinned in the local cache, but probably not all - * caches. Such pins will typically not be consistant across - * processes, and thus cannot be marked as dirty unless they - * happen to overlap some collective operation. + * local_pinned: Boolean flag that is set to true iff the entry + * has been pinned in the local cache, but probably not all + * caches. Such pins will typically not be consistant across + * processes, and thus cannot be marked as dirty unless they + * happen to overlap some collective operation. * * cleared: Boolean flag that is set to true whenever the entry is * dirty, and is cleared via a call to datum_notify with the @@ -142,61 +142,61 @@ int total_writes = 0; * flushed: Boolean flag that is set to true whenever the entry is * dirty, and is flushed by the metadata cache. * - * reads: Integer field used to maintain a count of the number of - * times this entry has been read from the server since - * the last time the read and write counts were reset. + * reads: Integer field used to maintain a count of the number of + * times this entry has been read from the server since + * the last time the read and write counts were reset. * - * writes: Integer field used to maintain a count of the number of - * times this entry has been written to the server since - * the last time the read and write counts were reset. + * writes: Integer field used to maintain a count of the number of + * times this entry has been written to the server since + * the last time the read and write counts were reset. * - * index: Index of this instance of datum in the data_index[] array - * discussed below. + * index: Index of this instance of datum in the data_index[] array + * discussed below. * - * aux_ptr: Pointer to the instance of H5AC_aux_t associated with the - * instance of the metadata cache within which this entry - * resides. This field was added to allow us to pass this - * value to the notify callback from the serialize callback. - * It should be NULL when not in use. + * aux_ptr: Pointer to the instance of H5AC_aux_t associated with the + * instance of the metadata cache within which this entry + * resides. This field was added to allow us to pass this + * value to the notify callback from the serialize callback. + * It should be NULL when not in use. * *****************************************************************************/ struct datum { - H5C_cache_entry_t header; - haddr_t base_addr; - size_t len; - size_t local_len; - int ver; - hbool_t dirty; - hbool_t valid; - hbool_t locked; - hbool_t global_pinned; - hbool_t local_pinned; - hbool_t cleared; + H5C_cache_entry_t header; + haddr_t base_addr; + size_t len; + size_t local_len; + int ver; + hbool_t dirty; + hbool_t valid; + hbool_t locked; + hbool_t global_pinned; + hbool_t local_pinned; + hbool_t cleared; hbool_t flushed; - int reads; - int writes; - int index; + int reads; + int writes; + int index; struct H5AC_aux_t * aux_ptr; }; /***************************************************************************** * data array * - * The data array is an array of instances of datum of size - * NUM_DATA_ENTRIES that is used to track the particulars of all - * the entries that may be loaded into the cache. + * The data array is an array of instances of datum of size + * NUM_DATA_ENTRIES that is used to track the particulars of all + * the entries that may be loaded into the cache. * - * It exists on all processes, although the master copy is maintained - * by the server process. If the cache is performing correctly, all - * versions should be effectively identical. By that I mean that - * the data received from the server should always match that in - * the local version of the data array. + * It exists on all processes, although the master copy is maintained + * by the server process. If the cache is performing correctly, all + * versions should be effectively identical. By that I mean that + * the data received from the server should always match that in + * the local version of the data array. * *****************************************************************************/ -#define NUM_DATA_ENTRIES 100000 +#define NUM_DATA_ENTRIES 100000 struct datum data[NUM_DATA_ENTRIES]; @@ -215,10 +215,10 @@ struct datum data[NUM_DATA_ENTRIES]; * Further, this value must be consistant across all processes. */ -#define STD_VIRT_NUM_DATA_ENTRIES NUM_DATA_ENTRIES -#define EXPRESS_VIRT_NUM_DATA_ENTRIES (NUM_DATA_ENTRIES / 10) +#define STD_VIRT_NUM_DATA_ENTRIES NUM_DATA_ENTRIES +#define EXPRESS_VIRT_NUM_DATA_ENTRIES (NUM_DATA_ENTRIES / 10) /* Use a smaller test size to avoid creating huge MPE logfiles. */ -#define MPE_VIRT_NUM_DATA_ENTIES (NUM_DATA_ENTRIES / 100) +#define MPE_VIRT_NUM_DATA_ENTIES (NUM_DATA_ENTRIES / 100) int virt_num_data_entries = NUM_DATA_ENTRIES; @@ -226,14 +226,14 @@ int virt_num_data_entries = NUM_DATA_ENTRIES; /***************************************************************************** * data_index array * - * The data_index array is an array of integer used to maintain a list - * of instances of datum in the data array in increasing base_addr order. + * The data_index array is an array of integer used to maintain a list + * of instances of datum in the data array in increasing base_addr order. * - * This array is necessary, as move operations can swap the values - * of the base_addr fields of two instances of datum. Without this - * array, we would no longer be able to use a binary search on a sorted - * list to find the indexes of instances of datum given the values of - * their base_addr fields. + * This array is necessary, as move operations can swap the values + * of the base_addr fields of two instances of datum. Without this + * array, we would no longer be able to use a binary search on a sorted + * list to find the indexes of instances of datum given the values of + * their base_addr fields. * *****************************************************************************/ @@ -242,99 +242,99 @@ int data_index[NUM_DATA_ENTRIES]; /***************************************************************************** * The following two #defines are used to control code that is in turn used - * to force "POSIX" semantics on the server process used to simulate metadata - * reads and writes. Without some such mechanism, the test code contains + * to force "POSIX" semantics on the server process used to simulate metadata + * reads and writes. Without some such mechanism, the test code contains * race conditions that will frequently cause spurious failures. * * When set to TRUE, DO_WRITE_REQ_ACK forces the server to send an ack after - * each write request, and the client to wait until the ack is received + * each write request, and the client to wait until the ack is received * before proceeding. This was my first solution to the problem, and at * first glance, it would seem to have a lot of unnecessary overhead. * * In an attempt to reduce the overhead, I implemented a second solution - * in which no acks are sent after writes. Instead, the metadata cache is - * provided with a callback function to call after each sequence of writes. - * This callback simply causes the client to send the server process a + * in which no acks are sent after writes. Instead, the metadata cache is + * provided with a callback function to call after each sequence of writes. + * This callback simply causes the client to send the server process a * "sync" message and and await an ack in reply. * - * Strangely, at least on Phoenix, the first solution runs faster by a - * rather large margin. However, I can imagine this changing with + * Strangely, at least on Phoenix, the first solution runs faster by a + * rather large margin. However, I can imagine this changing with * different OS's and MPI implementatins. * - * Thus I have left code supporting the second solution in place. + * Thus I have left code supporting the second solution in place. * - * Note that while one of these two #defines must be set to TRUE, there - * should never be any need to set both of them to TRUE (although the + * Note that while one of these two #defines must be set to TRUE, there + * should never be any need to set both of them to TRUE (although the * tests will still function with this setting). *****************************************************************************/ -#define DO_WRITE_REQ_ACK TRUE -#define DO_SYNC_AFTER_WRITE FALSE +#define DO_WRITE_REQ_ACK TRUE +#define DO_SYNC_AFTER_WRITE FALSE /***************************************************************************** * struct mssg * - * The mssg structure is used as a generic container for messages to - * and from the server. Not all fields are used in all cases. + * The mssg structure is used as a generic container for messages to + * and from the server. Not all fields are used in all cases. * - * req: Integer field containing the type of the message. + * req: Integer field containing the type of the message. * - * src: World communicator MPI rank of the sending process. + * src: World communicator MPI rank of the sending process. * - * dest: World communicator MPI rank of the destination process. + * dest: World communicator MPI rank of the destination process. * - * mssg_num: Serial number assigned to the message by the sender. + * mssg_num: Serial number assigned to the message by the sender. * - * base_addr: Base address of a datum. Not used in all mssgs. + * base_addr: Base address of a datum. Not used in all mssgs. * - * len: Length of a datum (in bytes). Not used in all mssgs. + * len: Length of a datum (in bytes). Not used in all mssgs. * - * ver: Version number of a datum. Not used in all mssgs. + * ver: Version number of a datum. Not used in all mssgs. * - * count: Reported number of total/entry reads/writes. Not used - * in all mssgs. + * count: Reported number of total/entry reads/writes. Not used + * in all mssgs. * - * magic: Magic number for error detection. Must be set to - * MSSG_MAGIC. + * magic: Magic number for error detection. Must be set to + * MSSG_MAGIC. * *****************************************************************************/ -#define WRITE_REQ_CODE 0 -#define WRITE_REQ_ACK_CODE 1 -#define READ_REQ_CODE 2 -#define READ_REQ_REPLY_CODE 3 -#define SYNC_REQ_CODE 4 -#define SYNC_ACK_CODE 5 -#define REQ_TTL_WRITES_CODE 6 -#define REQ_TTL_WRITES_RPLY_CODE 7 -#define REQ_TTL_READS_CODE 8 -#define REQ_TTL_READS_RPLY_CODE 9 -#define REQ_ENTRY_WRITES_CODE 10 -#define REQ_ENTRY_WRITES_RPLY_CODE 11 -#define REQ_ENTRY_READS_CODE 12 -#define REQ_ENTRY_READS_RPLY_CODE 13 -#define REQ_RW_COUNT_RESET_CODE 14 -#define REQ_RW_COUNT_RESET_RPLY_CODE 15 -#define DONE_REQ_CODE 16 -#define MAX_REQ_CODE 16 - -#define MSSG_MAGIC 0x1248 +#define WRITE_REQ_CODE 0 +#define WRITE_REQ_ACK_CODE 1 +#define READ_REQ_CODE 2 +#define READ_REQ_REPLY_CODE 3 +#define SYNC_REQ_CODE 4 +#define SYNC_ACK_CODE 5 +#define REQ_TTL_WRITES_CODE 6 +#define REQ_TTL_WRITES_RPLY_CODE 7 +#define REQ_TTL_READS_CODE 8 +#define REQ_TTL_READS_RPLY_CODE 9 +#define REQ_ENTRY_WRITES_CODE 10 +#define REQ_ENTRY_WRITES_RPLY_CODE 11 +#define REQ_ENTRY_READS_CODE 12 +#define REQ_ENTRY_READS_RPLY_CODE 13 +#define REQ_RW_COUNT_RESET_CODE 14 +#define REQ_RW_COUNT_RESET_RPLY_CODE 15 +#define DONE_REQ_CODE 16 +#define MAX_REQ_CODE 16 + +#define MSSG_MAGIC 0x1248 struct mssg_t { - int req; - int src; - int dest; - long int mssg_num; - haddr_t base_addr; - unsigned len; - int ver; - unsigned count; - unsigned magic; + int req; + int src; + int dest; + long int mssg_num; + haddr_t base_addr; + unsigned len; + int ver; + unsigned count; + unsigned magic; }; -MPI_Datatype mpi_mssg_t; /* for MPI derived type created from mssg */ +MPI_Datatype mpi_mssg_t; /* for MPI derived type created from mssg */ /*****************************************************************************/ @@ -408,24 +408,24 @@ static herr_t datum_notify(H5C_notify_action_t action, void *thing); static herr_t datum_free_icr(void * thing); /* Masquerade as object header entries to the cache */ -#define DATUM_ENTRY_TYPE H5AC_OHDR_ID +#define DATUM_ENTRY_TYPE H5AC_OHDR_ID -#define NUMBER_OF_ENTRY_TYPES 1 +#define NUMBER_OF_ENTRY_TYPES 1 /* Note the use of the H5AC__CLASS_SKIP_READS and H5AC__CLASS_SKIP_WRITES * flags. As a result of these flags, the metadata cache does no file I/O * on metadata of the datum type. * - * Instead, this test uses a server process to keep track of who has + * Instead, this test uses a server process to keep track of who has * written and read what, and to verify that there are no messages from * the past / future. * - * In the callbacks for the version 2 cache, this activity was hidden in + * In the callbacks for the version 2 cache, this activity was hidden in * the load and flush callbacks. However, now we handle this function in * notify callbacks for the after load and after flush events. * - * JRM -- 1/13/15 + * JRM -- 1/13/15 */ const H5C_class_t types[NUMBER_OF_ENTRY_TYPES] = { @@ -473,9 +473,9 @@ static void pin_protected_entry(int32_t idx, hbool_t global); static void move_entry(H5F_t * file_ptr, int32_t old_idx, int32_t new_idx); static hbool_t reset_server_counts(void); static void resize_entry(int32_t idx, size_t new_size); -static hbool_t setup_cache_for_test(hid_t * fid_ptr, +static hbool_t setup_cache_for_test(hid_t * fid_ptr, H5F_t ** file_ptr_ptr, - H5C_t ** cache_ptr_ptr, + H5C_t ** cache_ptr_ptr, int metadata_write_strategy); static void setup_rand(void); static hbool_t take_down_cache(hid_t fid, H5C_t * cache_ptr); @@ -549,17 +549,17 @@ print_stats(void) /***************************************************************************** * - * Function: reset_stats() + * Function: reset_stats() * - * Purpose: Reset the rudementary stats maintained by t_cache. + * Purpose: Reset the rudementary stats maintained by t_cache. * - * Return: void + * Return: void * - * Programmer: JRM -- 4/17/06 + * Programmer: JRM -- 4/17/06 * * Modifications: * - * None. + * None. * *****************************************************************************/ @@ -572,9 +572,9 @@ reset_stats(void) datum_flushes = 0; datum_pinned_flushes = 0; datum_loads = 0; - global_pins = 0; - global_dirty_pins = 0; - local_pins = 0; + global_pins = 0; + global_dirty_pins = 0; + local_pins = 0; return; @@ -587,20 +587,20 @@ reset_stats(void) /***************************************************************************** * - * Function: set_up_file_communicator() + * Function: set_up_file_communicator() * - * Purpose: Create the MPI communicator used to open a HDF5 file with. - * In passing, also initialize the file_mpi... globals. + * Purpose: Create the MPI communicator used to open a HDF5 file with. + * In passing, also initialize the file_mpi... globals. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 11/16/05 + * Programmer: JRM -- 11/16/05 * * Modifications: * - * None. + * None. * *****************************************************************************/ @@ -622,7 +622,7 @@ set_up_file_communicator(void) nerrors++; success = FALSE; - if ( verbose ) { + if ( verbose ) { fprintf(stdout, "%d:%s: MPI_Comm_group() failed with error %d.\n", world_mpi_rank, FUNC, mpi_result); @@ -739,16 +739,16 @@ set_up_file_communicator(void) /***************************************************************************** * - * Function: addr_to_datum_index() + * Function: addr_to_datum_index() * - * Purpose: Given the base address of a datum, find and return its index - * in the data array. + * Purpose: Given the base address of a datum, find and return its index + * in the data array. * - * Return: Success: index of target datum. + * Return: Success: index of target datum. * - * Failure: -1. + * Failure: -1. * - * Programmer: JRM -- 12/20/05 + * Programmer: JRM -- 12/20/05 * *****************************************************************************/ static int @@ -786,16 +786,16 @@ addr_to_datum_index(haddr_t base_addr) /***************************************************************************** * - * Function: init_data() + * Function: init_data() * - * Purpose: Initialize the data array, from which cache entries are - * loaded. + * Purpose: Initialize the data array, from which cache entries are + * loaded. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/20/05 + * Programmer: JRM -- 12/20/05 * *****************************************************************************/ static void @@ -830,14 +830,14 @@ init_data(void) data[i].dirty = FALSE; data[i].valid = FALSE; data[i].locked = FALSE; - data[i].global_pinned = FALSE; - data[i].local_pinned = FALSE; - data[i].cleared = FALSE; + data[i].global_pinned = FALSE; + data[i].local_pinned = FALSE; + data[i].cleared = FALSE; data[i].flushed = FALSE; data[i].reads = 0; data[i].writes = 0; - data[i].index = i; - data[i].aux_ptr = NULL; + data[i].index = i; + data[i].aux_ptr = NULL; data_index[i] = i; @@ -861,22 +861,22 @@ init_data(void) /***************************************************************************** * - * Function: do_express_test() + * Function: do_express_test() * - * Purpose: Do an MPI_Allreduce to obtain the maximum value returned - * by GetTestExpress() across all processes. Return this - * value. + * Purpose: Do an MPI_Allreduce to obtain the maximum value returned + * by GetTestExpress() across all processes. Return this + * value. * - * Envirmoment variables can be different across different - * processes. This function ensures that all processes agree - * on whether to do an express test. + * Envirmoment variables can be different across different + * processes. This function ensures that all processes agree + * on whether to do an express test. * - * Return: Success: Maximum of the values returned by - * GetTestExpress() across all processes. + * Return: Success: Maximum of the values returned by + * GetTestExpress() across all processes. * - * Failure: -1 + * Failure: -1 * - * Programmer: JRM -- 4/25/06 + * Programmer: JRM -- 4/25/06 * *****************************************************************************/ static int @@ -912,19 +912,19 @@ do_express_test(void) /***************************************************************************** * - * Function: do_sync() + * Function: do_sync() * - * Purpose: Ensure that all messages sent by this process have been - * processed before proceeding. + * Purpose: Ensure that all messages sent by this process have been + * processed before proceeding. * - * Do this by exchanging sync req / sync ack messages with - * the server. + * Do this by exchanging sync req / sync ack messages with + * the server. * - * Do nothing if nerrors is greater than zero. + * Do nothing if nerrors is greater than zero. * - * Return: void + * Return: void * - * Programmer: JRM -- 5/10/06 + * Programmer: JRM -- 5/10/06 * *****************************************************************************/ static void @@ -936,7 +936,7 @@ do_sync(void) if ( nerrors <= 0 ) { /* compose the message */ - mssg.req = SYNC_REQ_CODE; + mssg.req = SYNC_REQ_CODE; mssg.src = world_mpi_rank; mssg.dest = world_server_mpi_rank; mssg.mssg_num = -1; /* set by send function */ @@ -946,10 +946,10 @@ do_sync(void) mssg.count = 0; mssg.magic = MSSG_MAGIC; - if ( ! send_mssg(&mssg, FALSE) ) { + if ( ! send_mssg(&mssg, FALSE) ) { - nerrors++; - if ( verbose ) { + nerrors++; + if ( verbose ) { HDfprintf(stdout, "%d:%s: send_mssg() failed.\n", world_mpi_rank, FUNC); } @@ -958,24 +958,24 @@ do_sync(void) if ( nerrors <= 0 ) { - if ( ! recv_mssg(&mssg, SYNC_ACK_CODE) ) { + if ( ! recv_mssg(&mssg, SYNC_ACK_CODE) ) { nerrors++; if ( verbose ) { HDfprintf(stdout, "%d:%s: recv_mssg() failed.\n", world_mpi_rank, FUNC); } - } else if ( ( mssg.req != SYNC_ACK_CODE ) || + } else if ( ( mssg.req != SYNC_ACK_CODE ) || ( mssg.src != world_server_mpi_rank ) || ( mssg.dest != world_mpi_rank ) || - ( mssg.magic != MSSG_MAGIC ) ) { + ( mssg.magic != MSSG_MAGIC ) ) { nerrors++; - if ( verbose ) { + if ( verbose ) { HDfprintf(stdout, "%d:%s: Bad data in sync ack.\n", world_mpi_rank, FUNC); } - } + } } return; @@ -985,17 +985,17 @@ do_sync(void) /***************************************************************************** * - * Function: get_max_nerrors() + * Function: get_max_nerrors() * - * Purpose: Do an MPI_Allreduce to obtain the maximum value of nerrors - * across all processes. Return this value. + * Purpose: Do an MPI_Allreduce to obtain the maximum value of nerrors + * across all processes. Return this value. * - * Return: Success: Maximum of the nerrors global variables across - * all processes. + * Return: Success: Maximum of the nerrors global variables across + * all processes. * - * Failure: -1 + * Failure: -1 * - * Programmer: JRM -- 1/3/06 + * Programmer: JRM -- 1/3/06 * *****************************************************************************/ static int @@ -1032,29 +1032,29 @@ get_max_nerrors(void) /***************************************************************************** * - * Function: recv_mssg() + * Function: recv_mssg() * - * Purpose: Receive a message from any process in the provided instance - * of struct mssg. + * Purpose: Receive a message from any process in the provided instance + * of struct mssg. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * * Modifications: * - * JRM -- 5/10/06 - * Added mssg_tag_offset parameter and supporting code. + * JRM -- 5/10/06 + * Added mssg_tag_offset parameter and supporting code. * *****************************************************************************/ -#define CACHE_TEST_TAG 99 /* different from any used by the library */ +#define CACHE_TEST_TAG 99 /* different from any used by the library */ static hbool_t recv_mssg(struct mssg_t *mssg_ptr, - int mssg_tag_offset) + int mssg_tag_offset) { hbool_t success = TRUE; int mssg_tag = CACHE_TEST_TAG; @@ -1116,28 +1116,28 @@ recv_mssg(struct mssg_t *mssg_ptr, /***************************************************************************** * - * Function: send_mssg() + * Function: send_mssg() * - * Purpose: Send the provided instance of mssg to the indicated target. + * Purpose: Send the provided instance of mssg to the indicated target. * - * Note that all source and destination ranks are in the - * global communicator. + * Note that all source and destination ranks are in the + * global communicator. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * * Modifications: * - * JRM -- 5/10/06 - * Added the add_req_to_tag parameter and supporting code. + * JRM -- 5/10/06 + * Added the add_req_to_tag parameter and supporting code. * *****************************************************************************/ static hbool_t send_mssg(struct mssg_t *mssg_ptr, - hbool_t add_req_to_tag) + hbool_t add_req_to_tag) { hbool_t success = TRUE; int mssg_tag = CACHE_TEST_TAG; @@ -1165,10 +1165,10 @@ send_mssg(struct mssg_t *mssg_ptr, mssg_ptr->mssg_num = mssg_num++; - if ( add_req_to_tag ) { + if ( add_req_to_tag ) { - mssg_tag += mssg_ptr->req; - } + mssg_tag += mssg_ptr->req; + } result = MPI_Send((void *)mssg_ptr, 1, mpi_mssg_t, mssg_ptr->dest, mssg_tag, world_mpi_comm); @@ -1188,19 +1188,19 @@ send_mssg(struct mssg_t *mssg_ptr, } /* send_mssg() */ - + /***************************************************************************** * - * Function: setup_derived_types() + * Function: setup_derived_types() * - * Purpose: Set up the derived types used by the test bed. At present, - * only the mpi_mssg derived type is needed. + * Purpose: Set up the derived types used by the test bed. At present, + * only the mpi_mssg derived type is needed. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * *****************************************************************************/ static hbool_t @@ -1277,19 +1277,19 @@ setup_derived_types(void) } /* setup_derived_types */ - + /***************************************************************************** * - * Function: takedown_derived_types() + * Function: takedown_derived_types() * - * Purpose: take down the derived types used by the test bed. At present, - * only the mpi_mssg derived type is needed. + * Purpose: take down the derived types used by the test bed. At present, + * only the mpi_mssg derived type is needed. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * *****************************************************************************/ static hbool_t @@ -1321,16 +1321,16 @@ takedown_derived_types(void) /***************************************************************************** * - * Function: reset_server_counters() + * Function: reset_server_counters() * - * Purpose: Reset the counters maintained by the server, doing a - * sanity check in passing. + * Purpose: Reset the counters maintained by the server, doing a + * sanity check in passing. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -1362,7 +1362,7 @@ reset_server_counters(void) nerrors++; if ( verbose ) { HDfprintf(stdout, "%d:%s: actual/total reads mismatch (%ld/%ld).\n", - world_mpi_rank, FUNC, + world_mpi_rank, FUNC, actual_total_reads, total_reads); } } @@ -1373,7 +1373,7 @@ reset_server_counters(void) nerrors++; if ( verbose ) { HDfprintf(stdout, "%d:%s: actual/total writes mismatch (%ld/%ld).\n", - world_mpi_rank, FUNC, + world_mpi_rank, FUNC, actual_total_writes, total_writes); } } @@ -1388,25 +1388,25 @@ reset_server_counters(void) /***************************************************************************** * - * Function: server_main() + * Function: server_main() * - * Purpose: Main function for the server process. This process exists - * to provide an independant view of the data array. + * Purpose: Main function for the server process. This process exists + * to provide an independant view of the data array. * - * The function handles request from the other processes in - * the test until the count of done messages received equals - * the number of client processes. + * The function handles request from the other processes in + * the test until the count of done messages received equals + * the number of client processes. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * * Modifications: * - * JRM -- 5/10/06 - * Updated for sync message. + * JRM -- 5/10/06 + * Updated for sync message. * *****************************************************************************/ static hbool_t @@ -1436,98 +1436,98 @@ server_main(void) switch ( mssg.req ) { - case WRITE_REQ_CODE: - success = serve_write_request(&mssg); - break; + case WRITE_REQ_CODE: + success = serve_write_request(&mssg); + break; - case WRITE_REQ_ACK_CODE: + case WRITE_REQ_ACK_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received write ack?!?.\n", FUNC); - break; + break; - case READ_REQ_CODE: + case READ_REQ_CODE: success = serve_read_request(&mssg); - break; + break; - case READ_REQ_REPLY_CODE: + case READ_REQ_REPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received read req reply?!?.\n", FUNC); - break; + break; - case SYNC_REQ_CODE: + case SYNC_REQ_CODE: success = serve_sync_request(&mssg); - break; + break; - case SYNC_ACK_CODE: + case SYNC_ACK_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received sync ack?!?.\n", FUNC); - break; + break; - case REQ_TTL_WRITES_CODE: - success = serve_total_writes_request(&mssg); - break; + case REQ_TTL_WRITES_CODE: + success = serve_total_writes_request(&mssg); + break; - case REQ_TTL_WRITES_RPLY_CODE: + case REQ_TTL_WRITES_RPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received total writes reply?!?.\n", FUNC); - break; + break; - case REQ_TTL_READS_CODE: - success = serve_total_reads_request(&mssg); - break; + case REQ_TTL_READS_CODE: + success = serve_total_reads_request(&mssg); + break; - case REQ_TTL_READS_RPLY_CODE: + case REQ_TTL_READS_RPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received total reads reply?!?.\n", FUNC); - break; + break; - case REQ_ENTRY_WRITES_CODE: - success = serve_entry_writes_request(&mssg); - break; + case REQ_ENTRY_WRITES_CODE: + success = serve_entry_writes_request(&mssg); + break; - case REQ_ENTRY_WRITES_RPLY_CODE: + case REQ_ENTRY_WRITES_RPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received entry writes reply?!?.\n", FUNC); - break; + break; - case REQ_ENTRY_READS_CODE: - success = serve_entry_reads_request(&mssg); - break; + case REQ_ENTRY_READS_CODE: + success = serve_entry_reads_request(&mssg); + break; - case REQ_ENTRY_READS_RPLY_CODE: + case REQ_ENTRY_READS_RPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received entry reads reply?!?.\n", FUNC); - break; + break; - case REQ_RW_COUNT_RESET_CODE: - success = serve_rw_count_reset_request(&mssg); - break; + case REQ_RW_COUNT_RESET_CODE: + success = serve_rw_count_reset_request(&mssg); + break; - case REQ_RW_COUNT_RESET_RPLY_CODE: + case REQ_RW_COUNT_RESET_RPLY_CODE: success = FALSE; if(verbose) HDfprintf(stdout, "%s: Received RW count reset reply?!?.\n", FUNC); - break; + break; - case DONE_REQ_CODE: - done_count++; - if(done_count >= file_mpi_size) - done = TRUE; - break; + case DONE_REQ_CODE: + done_count++; + if(done_count >= file_mpi_size) + done = TRUE; + break; - default: + default: nerrors++; success = FALSE; if(verbose) - HDfprintf(stdout, "%d:%s: Unknown request code.\n", world_mpi_rank, FUNC); - break; + HDfprintf(stdout, "%d:%s: Unknown request code.\n", world_mpi_rank, FUNC); + break; } } } @@ -1536,23 +1536,23 @@ server_main(void) } /* server_main() */ - + /***************************************************************************** * - * Function: serve_read_request() + * Function: serve_read_request() * - * Purpose: Serve a read request. + * Purpose: Serve a read request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends - * a copy of the indicated datum from the data array to - * the requesting process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends + * a copy of the indicated datum from the data array to + * the requesting process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/22/05 + * Programmer: JRM -- 12/22/05 * *****************************************************************************/ static hbool_t @@ -1608,8 +1608,8 @@ serve_read_request(struct mssg_t * mssg_ptr) "%d:%s: proc %d read invalid entry. idx/base_addr = %d/%a.\n", world_mpi_rank, FUNC, mssg_ptr->src, - target_index, - data[target_index].base_addr); + target_index, + data[target_index].base_addr); } } else { @@ -1621,11 +1621,11 @@ serve_read_request(struct mssg_t * mssg_ptr) reply.base_addr = data[target_index].base_addr; reply.len = data[target_index].len; reply.ver = data[target_index].ver; - reply.count = 0; + reply.count = 0; reply.magic = MSSG_MAGIC; - /* and update the counters */ - total_reads++; + /* and update the counters */ + total_reads++; (data[target_index].reads)++; } } @@ -1640,7 +1640,7 @@ serve_read_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d read 0x%llx. len = %d. ver = %d.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (int)(data[target_index].len), (int)(data[target_index].ver)); @@ -1648,38 +1648,38 @@ serve_read_request(struct mssg_t * mssg_ptr) } else { HDfprintf(stdout, "%d read 0x%llx FAILED. len = %d. ver = %d.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (int)(data[target_index].len), (int)(data[target_index].ver)); } - } + } return(success); } /* serve_read_request() */ - + /***************************************************************************** * - * Function: serve_sync_request() + * Function: serve_sync_request() * - * Purpose: Serve a sync request. + * Purpose: Serve a sync request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends a - * sync ack to the requesting process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends a + * sync ack to the requesting process. * - * This service exist to allow the sending process to ensure - * that all previous messages have been processed before - * proceeding. + * This service exist to allow the sending process to ensure + * that all previous messages have been processed before + * proceeding. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/10/06 + * Programmer: JRM -- 5/10/06 * *****************************************************************************/ static hbool_t @@ -1711,7 +1711,7 @@ serve_sync_request(struct mssg_t * mssg_ptr) reply.base_addr = 0; reply.len = 0; reply.ver = 0; - reply.count = 0; + reply.count = 0; reply.magic = MSSG_MAGIC; } @@ -1731,29 +1731,29 @@ serve_sync_request(struct mssg_t * mssg_ptr) HDfprintf(stdout, "%d sync FAILED.\n", (int)(mssg_ptr->src)); } - } + } return(success); } /* serve_sync_request() */ - + /***************************************************************************** * - * Function: serve_write_request() + * Function: serve_write_request() * - * Purpose: Serve a write request. + * Purpose: Serve a write request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it updates - * the version number of the target data array entry as - * specified in the message. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it updates + * the version number of the target data array entry as + * specified in the message. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/21/05 + * Programmer: JRM -- 12/21/05 * *****************************************************************************/ static hbool_t @@ -1811,7 +1811,7 @@ serve_write_request(struct mssg_t * mssg_ptr) new_ver_num = mssg_ptr->ver; /* this check should catch duplicate writes */ - if ( new_ver_num <= data[target_index].ver ) { + if ( new_ver_num <= data[target_index].ver ) { nerrors++; success = FALSE; @@ -1825,12 +1825,12 @@ serve_write_request(struct mssg_t * mssg_ptr) if ( success ) { - /* process the write */ + /* process the write */ data[target_index].ver = new_ver_num; data[target_index].valid = TRUE; /* and update the counters */ - total_writes++; + total_writes++; (data[target_index].writes)++; #if DO_WRITE_REQ_ACK @@ -1846,7 +1846,7 @@ serve_write_request(struct mssg_t * mssg_ptr) reply.count = 0; reply.magic = MSSG_MAGIC; - /* and send it */ + /* and send it */ success = send_mssg(&reply, TRUE); #endif /* DO_WRITE_REQ_ACK */ @@ -1858,7 +1858,7 @@ serve_write_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d write 0x%llx. len = %d. ver = %d.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (int)(data[target_index].len), (int)(data[target_index].ver)); @@ -1866,36 +1866,36 @@ serve_write_request(struct mssg_t * mssg_ptr) } else { HDfprintf(stdout, "%d write 0x%llx FAILED. len = %d. ver = %d.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (int)(data[target_index].len), (int)(data[target_index].ver)); } - } + } return(success); } /* serve_write_request() */ - + /***************************************************************************** * - * Function: serve_total_writes_request() + * Function: serve_total_writes_request() * - * Purpose: Serve a request for the total number of writes recorded since - * the last reset. + * Purpose: Serve a request for the total number of writes recorded since + * the last reset. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends - * the current value of the total_writes global variable to - * the requesting process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends + * the current value of the total_writes global variable to + * the requesting process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -1941,40 +1941,40 @@ serve_total_writes_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d request total writes %ld.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), total_writes); } else { HDfprintf(stdout, "%d request total writes %ld -- FAILED.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), total_writes); } - } + } return(success); } /* serve_total_writes_request() */ - + /***************************************************************************** * - * Function: serve_total_reads_request() + * Function: serve_total_reads_request() * - * Purpose: Serve a request for the total number of reads recorded since - * the last reset. + * Purpose: Serve a request for the total number of reads recorded since + * the last reset. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends - * the current value of the total_reads global variable to - * the requesting process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends + * the current value of the total_reads global variable to + * the requesting process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -2020,40 +2020,40 @@ serve_total_reads_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d request total reads %ld.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), total_reads); } else { HDfprintf(stdout, "%d request total reads %ld -- FAILED.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), total_reads); } - } + } return(success); } /* serve_total_reads_request() */ - + /***************************************************************************** * - * Function: serve_entry_writes_request() + * Function: serve_entry_writes_request() * - * Purpose: Serve an entry writes request. + * Purpose: Serve an entry writes request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends - * the number of times that the indicated datum has been - * written since the last counter reset to the requesting - * process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends + * the number of times that the indicated datum has been + * written since the last counter reset to the requesting + * process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -2100,7 +2100,7 @@ serve_entry_writes_request(struct mssg_t * mssg_ptr) reply.base_addr = target_addr; reply.len = 0; reply.ver = 0; - reply.count = data[target_index].writes; + reply.count = data[target_index].writes; reply.magic = MSSG_MAGIC; } } @@ -2115,42 +2115,42 @@ serve_entry_writes_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d request entry 0x%llx writes = %ld.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (long)(data[target_index].writes)); } else { HDfprintf(stdout, "%d request entry 0x%llx writes = %ld FAILED.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (long)(data[target_index].writes)); } - } + } return(success); } /* serve_entry_writes_request() */ - + /***************************************************************************** * - * Function: serve_entry_reads_request() + * Function: serve_entry_reads_request() * - * Purpose: Serve an entry reads request. + * Purpose: Serve an entry reads request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it sends - * the number of times that the indicated datum has been - * read since the last counter reset to the requesting - * process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it sends + * the number of times that the indicated datum has been + * read since the last counter reset to the requesting + * process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -2197,7 +2197,7 @@ serve_entry_reads_request(struct mssg_t * mssg_ptr) reply.base_addr = target_addr; reply.len = 0; reply.ver = 0; - reply.count = (long)(data[target_index].reads); + reply.count = (long)(data[target_index].reads); reply.magic = MSSG_MAGIC; } } @@ -2212,41 +2212,41 @@ serve_entry_reads_request(struct mssg_t * mssg_ptr) if ( success ) { HDfprintf(stdout, "%d request entry 0x%llx reads = %ld.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (long)(data[target_index].reads)); } else { HDfprintf(stdout, "%d request entry 0x%llx reads = %ld FAILED.\n", - (int)(mssg_ptr->src), + (int)(mssg_ptr->src), (long long)(data[target_index].base_addr), (long)(data[target_index].reads)); } - } + } return(success); } /* serve_entry_reads_request() */ - + /***************************************************************************** * - * Function: serve_rw_count_reset_request() + * Function: serve_rw_count_reset_request() * - * Purpose: Serve read/write count reset request. + * Purpose: Serve read/write count reset request. * - * The function accepts a pointer to an instance of struct - * mssg_t as input. If all sanity checks pass, it resets the - * read/write counters, and sends a confirmation message to - * the calling process. + * The function accepts a pointer to an instance of struct + * mssg_t as input. If all sanity checks pass, it resets the + * read/write counters, and sends a confirmation message to + * the calling process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/5/10 + * Programmer: JRM -- 5/5/10 * *****************************************************************************/ static hbool_t @@ -2271,7 +2271,7 @@ serve_rw_count_reset_request(struct mssg_t * mssg_ptr) if ( success ) { success = reset_server_counters(); - } + } if ( success ) { @@ -2305,7 +2305,7 @@ serve_rw_count_reset_request(struct mssg_t * mssg_ptr) (int)(mssg_ptr->src)); } - } + } return(success); @@ -2316,15 +2316,15 @@ serve_rw_count_reset_request(struct mssg_t * mssg_ptr) /**************************** Call back functions ****************************/ /*****************************************************************************/ - + /*------------------------------------------------------------------------- - * Function: datum_get_initial_load_size + * Function: datum_get_initial_load_size * - * Purpose: Query the image size for an entry before deserializing it + * Purpose: Query the image size for an entry before deserializing it * - * Return: SUCCEED + * Return: SUCCEED * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * 5/18/10 * *------------------------------------------------------------------------- @@ -2354,9 +2354,9 @@ datum_get_initial_load_size(void *udata_ptr, size_t *image_len_ptr) if ( callbacks_verbose ) { HDfprintf(stdout, - "%d: get_initial_load_size() idx = %d, addr = %ld, len = %d.\n", + "%d: get_initial_load_size() idx = %d, addr = %ld, len = %d.\n", world_mpi_rank, idx, (long)addr, (int)entry_ptr->local_len); - fflush(stdout); + fflush(stdout); } /* Set image length size */ @@ -2365,15 +2365,15 @@ datum_get_initial_load_size(void *udata_ptr, size_t *image_len_ptr) return(SUCCEED); } /* get_initial_load_size() */ - + /*------------------------------------------------------------------------- - * Function: datum_deserialize + * Function: datum_deserialize * - * Purpose: deserialize the entry. + * Purpose: deserialize the entry. * - * Return: void * (pointer to the in core representation of the entry) + * Return: void * (pointer to the in core representation of the entry) * - * Programmer: John Mainzer + * Programmer: John Mainzer * 9/20/07 * *------------------------------------------------------------------------- @@ -2408,10 +2408,10 @@ datum_deserialize(const void * image_ptr, if ( callbacks_verbose ) { HDfprintf(stdout, - "%d: deserialize() idx = %d, addr = %ld, len = %d, is_dirty = %d.\n", - world_mpi_rank, idx, (long)addr, (int)len, - (int)(entry_ptr->header.is_dirty)); - fflush(stdout); + "%d: deserialize() idx = %d, addr = %ld, len = %d, is_dirty = %d.\n", + world_mpi_rank, idx, (long)addr, (int)len, + (int)(entry_ptr->header.is_dirty)); + fflush(stdout); } *dirty_ptr = FALSE; @@ -2426,18 +2426,18 @@ datum_deserialize(const void * image_ptr, } /* deserialize() */ - + /*------------------------------------------------------------------------- - * Function: datum_image_len + * Function: datum_image_len * - * Purpose: Return the real (and possibly reduced) length of the image. - * The helper functions verify that the correct version of - * deserialize is being called, and then call deserialize - * proper. + * Purpose: Return the real (and possibly reduced) length of the image. + * The helper functions verify that the correct version of + * deserialize is being called, and then call deserialize + * proper. * - * Return: SUCCEED + * Return: SUCCEED * - * Programmer: John Mainzer + * Programmer: John Mainzer * 9/19/07 * *------------------------------------------------------------------------- @@ -2464,10 +2464,10 @@ datum_image_len(const void *thing, size_t *image_len) if(callbacks_verbose) { HDfprintf(stdout, - "%d: image_len() idx = %d, addr = %ld, len = %d.\n", - world_mpi_rank, idx, (long)(entry_ptr->base_addr), - (int)(entry_ptr->local_len)); - fflush(stdout); + "%d: image_len() idx = %d, addr = %ld, len = %d.\n", + world_mpi_rank, idx, (long)(entry_ptr->base_addr), + (int)(entry_ptr->local_len)); + fflush(stdout); } HDassert( entry_ptr->header.addr == entry_ptr->base_addr ); @@ -2477,15 +2477,15 @@ datum_image_len(const void *thing, size_t *image_len) return(SUCCEED); } /* datum_image_len() */ - + /*------------------------------------------------------------------------- - * Function: datum_serialize + * Function: datum_serialize * - * Purpose: Serialize the supplied entry. + * Purpose: Serialize the supplied entry. * - * Return: SUCCEED if successful, FAIL otherwise. + * Return: SUCCEED if successful, FAIL otherwise. * - * Programmer: John Mainzer + * Programmer: John Mainzer * 10/30/07 * *------------------------------------------------------------------------- @@ -2510,11 +2510,11 @@ datum_serialize(const H5F_t *f, HDassert( f ); HDassert( f->shared ); HDassert( f->shared->cache ); - + cache_ptr = f->shared->cache; HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC ); - HDassert( cache_ptr->aux_ptr ); + HDassert( cache_ptr->aux_ptr ); aux_ptr = (H5AC_aux_t *)(f->shared->cache->aux_ptr); @@ -2533,9 +2533,9 @@ datum_serialize(const H5F_t *f, if ( callbacks_verbose ) { HDfprintf(stdout, - "%d: serialize() idx = %d, addr = %ld, len = %d.\n", - world_mpi_rank, idx, (long)entry_ptr->header.addr, (int)len); - fflush(stdout); + "%d: serialize() idx = %d, addr = %ld, len = %d.\n", + world_mpi_rank, idx, (long)entry_ptr->header.addr, (int)len); + fflush(stdout); } HDassert( entry_ptr->header.addr == entry_ptr->base_addr ); @@ -2556,16 +2556,16 @@ datum_serialize(const H5F_t *f, } /* datum_serialize() */ - + /*------------------------------------------------------------------------- - * Function: datum_notify + * Function: datum_notify * - * Purpose: Do the communication with the server we used to do in the - * flush and load callbacks in the version 2 cache. + * Purpose: Do the communication with the server we used to do in the + * flush and load callbacks in the version 2 cache. * - * Return: SUCCEED + * Return: SUCCEED * - * Programmer: John Mainzer + * Programmer: John Mainzer * 1/12/15 * *------------------------------------------------------------------------- @@ -2595,7 +2595,7 @@ datum_notify(H5C_notify_action_t action, void *thing) HDfprintf(stdout, "%d: notify() action = %d, idx = %d, addr = %ld.\n", - world_mpi_rank, (int) action, idx, + world_mpi_rank, (int) action, idx, (long)entry_ptr->header.addr); fflush(stdout); } @@ -2684,62 +2684,62 @@ datum_notify(H5C_notify_action_t action, void *thing) } #if 0 /* This has been useful debugging code -- keep it for now. */ - if ( mssg.req != READ_REQ_REPLY_CODE ) { + if ( mssg.req != READ_REQ_REPLY_CODE ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: mssg.req != READ_REQ_REPLY_CODE.\n", - world_mpi_rank, FUNC); - HDfprintf(stdout, "%d:%s: mssg.req = %d.\n", - world_mpi_rank, FUNC, (int)(mssg.req)); - } + world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: mssg.req = %d.\n", + world_mpi_rank, FUNC, (int)(mssg.req)); + } - if ( mssg.src != world_server_mpi_rank ) { + if ( mssg.src != world_server_mpi_rank ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: mssg.src != world_server_mpi_rank.\n", - world_mpi_rank, FUNC); - } + world_mpi_rank, FUNC); + } - if ( mssg.dest != world_mpi_rank ) { + if ( mssg.dest != world_mpi_rank ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: mssg.dest != world_mpi_rank.\n", - world_mpi_rank, FUNC); + world_mpi_rank, FUNC); } - if ( mssg.base_addr != entry_ptr->base_addr ) { + if ( mssg.base_addr != entry_ptr->base_addr ) { - HDfprintf(stdout, - "%d:%s: mssg.base_addr != entry_ptr->base_addr.\n", - world_mpi_rank, FUNC); - HDfprintf(stdout, "%d:%s: mssg.base_addr = %a.\n", - world_mpi_rank, FUNC, mssg.base_addr); - HDfprintf(stdout, + HDfprintf(stdout, + "%d:%s: mssg.base_addr != entry_ptr->base_addr.\n", + world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: mssg.base_addr = %a.\n", + world_mpi_rank, FUNC, mssg.base_addr); + HDfprintf(stdout, "%d:%s: entry_ptr->base_addr = %a.\n", - world_mpi_rank, FUNC, + world_mpi_rank, FUNC, entry_ptr->base_addr); } - if ( mssg.len != entry_ptr->len ) { + if ( mssg.len != entry_ptr->len ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: mssg.len != entry_ptr->len.\n", - world_mpi_rank, FUNC); - HDfprintf(stdout, "%d:%s: mssg.len = %a.\n", - world_mpi_rank, FUNC, mssg.len); + world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: mssg.len = %a.\n", + world_mpi_rank, FUNC, mssg.len); } - if ( mssg.ver < entry_ptr->ver ) { + if ( mssg.ver < entry_ptr->ver ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: mssg.ver < entry_ptr->ver.\n", - world_mpi_rank, FUNC); + world_mpi_rank, FUNC); } - if ( mssg.magic != MSSG_MAGIC ) { + if ( mssg.magic != MSSG_MAGIC ) { - HDfprintf(stdout, "%d:%s: mssg.magic != MSSG_MAGIC.\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: mssg.magic != MSSG_MAGIC.\n", + world_mpi_rank, FUNC); } #endif /* JRM */ @@ -2752,7 +2752,7 @@ datum_notify(H5C_notify_action_t action, void *thing) } break; - case H5C_NOTIFY_ACTION_AFTER_FLUSH: + case H5C_NOTIFY_ACTION_AFTER_FLUSH: if ( callbacks_verbose ) { HDfprintf(stdout, @@ -2766,11 +2766,11 @@ datum_notify(H5C_notify_action_t action, void *thing) aux_ptr = entry_ptr->aux_ptr; entry_ptr->aux_ptr = NULL; - HDassert(entry_ptr->header.is_dirty); /* JRM */ + HDassert(entry_ptr->header.is_dirty); /* JRM */ - if ( ( file_mpi_rank != 0 ) && + if ( ( file_mpi_rank != 0 ) && ( entry_ptr->dirty ) && - ( aux_ptr->metadata_write_strategy == + ( aux_ptr->metadata_write_strategy == H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY ) ) { ret_value = FAIL; @@ -2783,8 +2783,8 @@ datum_notify(H5C_notify_action_t action, void *thing) if ( entry_ptr->header.is_dirty ) { - was_dirty = TRUE; /* so we will receive the ack - * if requested + was_dirty = TRUE; /* so we will receive the ack + * if requested */ /* compose the message */ @@ -2810,7 +2810,7 @@ datum_notify(H5C_notify_action_t action, void *thing) else { entry_ptr->dirty = FALSE; - entry_ptr->flushed = TRUE; + entry_ptr->flushed = TRUE; } } } @@ -2838,7 +2838,7 @@ datum_notify(H5C_notify_action_t action, void *thing) nerrors++; ret_value = FAIL; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: Bad data in write req ack.\n", world_mpi_rank, FUNC); } @@ -2854,7 +2854,7 @@ datum_notify(H5C_notify_action_t action, void *thing) datum_pinned_flushes++; HDassert(entry_ptr->global_pinned || entry_ptr->local_pinned); } - break; + break; case H5AC_NOTIFY_ACTION_BEFORE_EVICT: if ( callbacks_verbose ) { @@ -2949,33 +2949,33 @@ datum_notify(H5C_notify_action_t action, void *thing) /* do nothing */ break; - default: + default: nerrors++; ret_value = FAIL; if ( verbose ) { HDfprintf(stdout, "%d:%s: Unknown notify action.\n", world_mpi_rank, FUNC); } - break; + break; } return(ret_value); } /* datum_notify() */ - + /*------------------------------------------------------------------------- - * Function: datum_free_icr + * Function: datum_free_icr * - * Purpose: Nominally, this callback is supposed to free the - * in core representation of the entry. + * Purpose: Nominally, this callback is supposed to free the + * in core representation of the entry. * - * In the context of this test bed, we use it to do - * do all the processing we used to do on a destroy. + * In the context of this test bed, we use it to do + * do all the processing we used to do on a destroy. * - * Return: SUCCEED + * Return: SUCCEED * - * Programmer: John Mainzer + * Programmer: John Mainzer * 9/19/07 * *------------------------------------------------------------------------- @@ -3000,9 +3000,9 @@ datum_free_icr(void * thing) if ( callbacks_verbose ) { HDfprintf(stdout, - "%d: free_icr() idx = %d, dirty = %d.\n", - world_mpi_rank, idx, (int)(entry_ptr->dirty)); - fflush(stdout); + "%d: free_icr() idx = %d, dirty = %d.\n", + world_mpi_rank, idx, (int)(entry_ptr->dirty)); + fflush(stdout); } HDassert( entry_ptr->header.addr == entry_ptr->base_addr ); @@ -3019,7 +3019,7 @@ datum_free_icr(void * thing) return(SUCCEED); } /* datum_free_icr() */ - + /*****************************************************************************/ /************************** test utility functions ***************************/ /*****************************************************************************/ @@ -3028,9 +3028,9 @@ datum_free_icr(void * thing) * Function: expunge_entry() * * Purpose: Expunge the entry indicated by the type and index, mark it - * as clean, and don't increment its version number. + * as clean, and don't increment its version number. * - * Do nothing if nerrors is non-zero on entry. + * Do nothing if nerrors is non-zero on entry. * * Return: void * @@ -3061,36 +3061,36 @@ expunge_entry(H5F_t * file_ptr, if ( nerrors == 0 ) { result = H5AC_expunge_entry(file_ptr, (hid_t)-1, &(types[0]), - entry_ptr->header.addr, H5AC__NO_FLAGS_SET); + entry_ptr->header.addr, H5AC__NO_FLAGS_SET); if ( result < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Error in H5AC_expunge_entry().\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: Error in H5AC_expunge_entry().\n", + world_mpi_rank, FUNC); } } HDassert( ((entry_ptr->header).type)->id == DATUM_ENTRY_TYPE ); - HDassert( ! ((entry_ptr->header).is_dirty) ); + HDassert( ! ((entry_ptr->header).is_dirty) ); - result = H5C_get_entry_status(file_ptr, entry_ptr->base_addr, - NULL, &in_cache, NULL, NULL, NULL, NULL, NULL, NULL, NULL); + result = H5C_get_entry_status(file_ptr, entry_ptr->base_addr, + NULL, &in_cache, NULL, NULL, NULL, NULL, NULL, NULL, NULL); - if ( result < 0 ) { + if ( result < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Error in H5C_get_entry_status().\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: Error in H5C_get_entry_status().\n", + world_mpi_rank, FUNC); } } else if ( in_cache ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Expunged entry still in cache?!?\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: Expunged entry still in cache?!?\n", + world_mpi_rank, FUNC); } } } @@ -3099,14 +3099,14 @@ expunge_entry(H5F_t * file_ptr, } /* expunge_entry() */ - + /***************************************************************************** * Function: insert_entry() * * Purpose: Insert the entry indicated by the type and index, mark it - * as dirty, and increment its version number. + * as dirty, and increment its version number. * - * Do nothing if nerrors is non-zero on entry. + * Do nothing if nerrors is non-zero on entry. * * Return: void * @@ -3157,33 +3157,33 @@ insert_entry(H5C_t * cache_ptr, nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Error in H5AC_insert_entry().\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: Error in H5AC_insert_entry().\n", + world_mpi_rank, FUNC); } } if ( ! (entry_ptr->header.is_dirty) ) { - /* it is possible that we just exceeded the dirty bytes - * threshold, triggering a write of the newly inserted - * entry. Test for this, and only flag an error if this - * is not the case. - */ + /* it is possible that we just exceeded the dirty bytes + * threshold, triggering a write of the newly inserted + * entry. Test for this, and only flag an error if this + * is not the case. + */ - struct H5AC_aux_t * aux_ptr; + struct H5AC_aux_t * aux_ptr; - aux_ptr = ((H5AC_aux_t *)(cache_ptr->aux_ptr)); + aux_ptr = ((H5AC_aux_t *)(cache_ptr->aux_ptr)); - if ( ! ( ( aux_ptr != NULL ) && - ( aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC ) && - ( aux_ptr->dirty_bytes == 0 ) ) ) { + if ( ! ( ( aux_ptr != NULL ) && + ( aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC ) && + ( aux_ptr->dirty_bytes == 0 ) ) ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: data[%d].header.is_dirty = %d.\n", - world_mpi_rank, FUNC, idx, + HDfprintf(stdout, "%d:%s: data[%d].header.is_dirty = %d.\n", + world_mpi_rank, FUNC, idx, (int)(data[idx].header.is_dirty)); - } + } } } @@ -3191,7 +3191,7 @@ insert_entry(H5C_t * cache_ptr, HDassert( entry_ptr->header.is_pinned ); entry_ptr->global_pinned = TRUE; - global_pins++; + global_pins++; } else { @@ -3208,7 +3208,7 @@ insert_entry(H5C_t * cache_ptr, } /* insert_entry() */ - + /***************************************************************************** * Function: local_pin_and_unpin_random_entries() * @@ -3227,8 +3227,8 @@ static void local_pin_and_unpin_random_entries(H5F_t * file_ptr, int min_idx, int max_idx, - int min_count, - int max_count) + int min_count, + int max_count) { if ( nerrors == 0 ) { @@ -3243,40 +3243,40 @@ local_pin_and_unpin_random_entries(H5F_t * file_ptr, HDassert( min_idx < max_idx ); HDassert( max_idx < NUM_DATA_ENTRIES ); HDassert( max_idx < virt_num_data_entries ); - HDassert( 0 <= min_count ); - HDassert( min_count < max_count ); + HDassert( 0 <= min_count ); + HDassert( min_count < max_count ); - count = (HDrand() % (max_count - min_count)) + min_count; + count = (HDrand() % (max_count - min_count)) + min_count; - HDassert( min_count <= count ); - HDassert( count <= max_count ); + HDassert( min_count <= count ); + HDassert( count <= max_count ); - for ( i = 0; i < count; i++ ) - { + for ( i = 0; i < count; i++ ) + { local_pin_random_entry(file_ptr, min_idx, max_idx); - } + } - count = (HDrand() % (max_count - min_count)) + min_count; + count = (HDrand() % (max_count - min_count)) + min_count; - HDassert( min_count <= count ); - HDassert( count <= max_count ); + HDassert( min_count <= count ); + HDassert( count <= max_count ); i = 0; - idx = 0; + idx = 0; - while ( ( i < count ) && ( idx >= 0 ) ) - { - via_unprotect = ( (((unsigned)i) & 0x0001) == 0 ); - idx = local_unpin_next_pinned_entry(file_ptr, idx, via_unprotect); - i++; - } + while ( ( i < count ) && ( idx >= 0 ) ) + { + via_unprotect = ( (((unsigned)i) & 0x0001) == 0 ); + idx = local_unpin_next_pinned_entry(file_ptr, idx, via_unprotect); + i++; + } } return; } /* local_pin_and_unpin_random_entries() */ - + /***************************************************************************** * Function: local_pin_random_entry() * @@ -3308,13 +3308,13 @@ local_pin_random_entry(H5F_t * file_ptr, HDassert( max_idx < NUM_DATA_ENTRIES ); HDassert( max_idx < virt_num_data_entries ); - do - { - idx = (HDrand() % (max_idx - min_idx)) + min_idx; + do + { + idx = (HDrand() % (max_idx - min_idx)) + min_idx; HDassert( min_idx <= idx ); HDassert( idx <= max_idx ); - } - while ( data[idx].global_pinned || data[idx].local_pinned ); + } + while ( data[idx].global_pinned || data[idx].local_pinned ); pin_entry(file_ptr, idx, FALSE, FALSE); } @@ -3323,7 +3323,7 @@ local_pin_random_entry(H5F_t * file_ptr, } /* local_pin_random_entry() */ - + /***************************************************************************** * Function: local_unpin_all_entries() * @@ -3339,7 +3339,7 @@ local_pin_random_entry(H5F_t * file_ptr, *****************************************************************************/ static void local_unpin_all_entries(H5F_t * file_ptr, - hbool_t via_unprotect) + hbool_t via_unprotect) { if ( nerrors == 0 ) { @@ -3348,25 +3348,25 @@ local_unpin_all_entries(H5F_t * file_ptr, HDassert( file_ptr ); - idx = 0; + idx = 0; - while ( idx >= 0 ) - { - idx = local_unpin_next_pinned_entry(file_ptr, - idx, via_unprotect); - } + while ( idx >= 0 ) + { + idx = local_unpin_next_pinned_entry(file_ptr, + idx, via_unprotect); + } } return; } /* local_unpin_all_entries() */ - + /***************************************************************************** * Function: local_unpin_next_pinned_entry() * * Purpose: Find the next locally pinned entry after the specified - * starting point, and unpin it. + * starting point, and unpin it. * * Do nothing if nerrors is non-zero on entry. * @@ -3381,7 +3381,7 @@ local_unpin_all_entries(H5F_t * file_ptr, static int local_unpin_next_pinned_entry(H5F_t * file_ptr, int start_idx, - hbool_t via_unprotect) + hbool_t via_unprotect) { int i = 0; int idx = -1; @@ -3393,39 +3393,39 @@ local_unpin_next_pinned_entry(H5F_t * file_ptr, HDassert( start_idx < NUM_DATA_ENTRIES ); HDassert( start_idx < virt_num_data_entries ); - idx = start_idx; + idx = start_idx; - while ( ( i < virt_num_data_entries ) && - ( ! ( data[idx].local_pinned ) ) ) - { - i++; - idx++; - if ( idx >= virt_num_data_entries ) { - idx = 0; - } - } + while ( ( i < virt_num_data_entries ) && + ( ! ( data[idx].local_pinned ) ) ) + { + i++; + idx++; + if ( idx >= virt_num_data_entries ) { + idx = 0; + } + } - if ( data[idx].local_pinned ) { + if ( data[idx].local_pinned ) { - unpin_entry(file_ptr, idx, FALSE, FALSE, via_unprotect); + unpin_entry(file_ptr, idx, FALSE, FALSE, via_unprotect); - } else { + } else { - idx = -1; - } + idx = -1; + } } return(idx); } /* local_unpin_next_pinned_entry() */ - + /***************************************************************************** * Function: lock_and_unlock_random_entries() * * Purpose: Obtain a random number in the closed interval [min_count, - * max_count]. Then protect and unprotect that number of - * random entries. + * max_count]. Then protect and unprotect that number of + * random entries. * * Do nothing if nerrors is non-zero on entry. * @@ -3466,12 +3466,12 @@ lock_and_unlock_random_entries(H5F_t * file_ptr, } /* lock_and_unlock_random_entries() */ - + /***************************************************************************** * Function: lock_and_unlock_random_entry() * * Purpose: Protect and then unprotect a random entry with index in - * the data[] array in the close interval [min_idx, max_idx]. + * the data[] array in the close interval [min_idx, max_idx]. * * Do nothing if nerrors is non-zero on entry. * @@ -3501,15 +3501,15 @@ lock_and_unlock_random_entry(H5F_t * file_ptr, HDassert( min_idx <= idx ); HDassert( idx <= max_idx ); - lock_entry(file_ptr, idx); - unlock_entry(file_ptr, idx, H5AC__NO_FLAGS_SET); + lock_entry(file_ptr, idx); + unlock_entry(file_ptr, idx, H5AC__NO_FLAGS_SET); } return; } /* lock_and_unlock_random_entry() */ - + /***************************************************************************** * Function: lock_entry() * @@ -3524,9 +3524,9 @@ lock_and_unlock_random_entry(H5F_t * file_ptr, * * Modifications: * - * JRM -- 7/11/06 - * Modified asserts to handle the new local_len field in - * datum. + * JRM -- 7/11/06 + * Modified asserts to handle the new local_len field in + * datum. * *****************************************************************************/ static void @@ -3543,30 +3543,30 @@ lock_entry(H5F_t * file_ptr, entry_ptr = &(data[idx]); - HDassert( ! (entry_ptr->locked) ); + HDassert( ! (entry_ptr->locked) ); - cache_entry_ptr = (H5C_cache_entry_t *)H5AC_protect(file_ptr, + cache_entry_ptr = (H5C_cache_entry_t *)H5AC_protect(file_ptr, H5AC_ind_read_dxpl_id, &(types[0]), entry_ptr->base_addr, - &entry_ptr->base_addr, + &entry_ptr->base_addr, H5AC__NO_FLAGS_SET); if ( ( cache_entry_ptr != (void *)(&(entry_ptr->header)) ) || ( entry_ptr->header.type != &(types[0]) ) || ( ( entry_ptr->len != entry_ptr->header.size ) && - ( entry_ptr->local_len != entry_ptr->header.size ) ) || + ( entry_ptr->local_len != entry_ptr->header.size ) ) || ( entry_ptr->base_addr != entry_ptr->header.addr ) ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: error in H5AC_protect().\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: error in H5AC_protect().\n", + world_mpi_rank, FUNC); } } else { - entry_ptr->locked = TRUE; + entry_ptr->locked = TRUE; - } + } HDassert( ((entry_ptr->header).type)->id == DATUM_ENTRY_TYPE ); } @@ -3603,33 +3603,33 @@ mark_entry_dirty(int32_t idx) entry_ptr = &(data[idx]); HDassert ( entry_ptr->locked || entry_ptr->global_pinned ); - HDassert ( ! (entry_ptr->local_pinned) ); + HDassert ( ! (entry_ptr->local_pinned) ); (entry_ptr->ver)++; entry_ptr->dirty = TRUE; - result = H5AC_mark_entry_dirty( (void *)entry_ptr); + result = H5AC_mark_entry_dirty( (void *)entry_ptr); if ( result < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: error in H5AC_mark_entry_dirty().\n", world_mpi_rank, FUNC); } } - else if ( ! ( entry_ptr->locked ) ) - { - global_dirty_pins++; - } + else if ( ! ( entry_ptr->locked ) ) + { + global_dirty_pins++; + } } return; } /* mark_entry_dirty() */ - + /***************************************************************************** * Function: pin_entry() * @@ -3646,8 +3646,8 @@ mark_entry_dirty(int32_t idx) static void pin_entry(H5F_t * file_ptr, int32_t idx, - hbool_t global, - hbool_t dirty) + hbool_t global, + hbool_t dirty) { unsigned int flags = H5AC__PIN_ENTRY_FLAG; struct datum * entry_ptr; @@ -3660,35 +3660,35 @@ pin_entry(H5F_t * file_ptr, entry_ptr = &(data[idx]); - HDassert ( ! (entry_ptr->global_pinned) ); - HDassert ( ! (entry_ptr->local_pinned) ); - HDassert ( ! ( dirty && ( ! global ) ) ); + HDassert ( ! (entry_ptr->global_pinned) ); + HDassert ( ! (entry_ptr->local_pinned) ); + HDassert ( ! ( dirty && ( ! global ) ) ); - lock_entry(file_ptr, idx); + lock_entry(file_ptr, idx); - if ( dirty ) { + if ( dirty ) { - flags |= H5AC__DIRTIED_FLAG; - } + flags |= H5AC__DIRTIED_FLAG; + } - unlock_entry(file_ptr, idx, flags); + unlock_entry(file_ptr, idx, flags); HDassert( (entry_ptr->header).is_pinned ); - HDassert( ( ! dirty ) || ( (entry_ptr->header).is_dirty ) ); + HDassert( ( ! dirty ) || ( (entry_ptr->header).is_dirty ) ); - if ( global ) { + if ( global ) { - entry_ptr->global_pinned = TRUE; + entry_ptr->global_pinned = TRUE; - global_pins++; + global_pins++; - } else { + } else { - entry_ptr->local_pinned = TRUE; + entry_ptr->local_pinned = TRUE; - local_pins++; + local_pins++; - } + } } return; @@ -3696,14 +3696,14 @@ pin_entry(H5F_t * file_ptr, } /* pin_entry() */ #ifdef H5_METADATA_TRACE_FILE - + /***************************************************************************** * Function: pin_protected_entry() * * Purpose: Insert the entry indicated by the type and index, mark it - * as dirty, and increment its version number. + * as dirty, and increment its version number. * - * Do nothing if nerrors is non-zero on entry. + * Do nothing if nerrors is non-zero on entry. * * Return: void * @@ -3713,7 +3713,7 @@ pin_entry(H5F_t * file_ptr, *****************************************************************************/ static void pin_protected_entry(int32_t idx, - hbool_t global) + hbool_t global) { herr_t result; struct datum * entry_ptr; @@ -3727,36 +3727,36 @@ pin_protected_entry(int32_t idx, if ( nerrors == 0 ) { - result = H5AC_pin_protected_entry((void *)entry_ptr); + result = H5AC_pin_protected_entry((void *)entry_ptr); if ( ( result < 0 ) || ( entry_ptr->header.type != &(types[0]) ) || ( ( entry_ptr->len != entry_ptr->header.size ) && - ( entry_ptr->local_len != entry_ptr->header.size ) )|| + ( entry_ptr->local_len != entry_ptr->header.size ) )|| ( entry_ptr->base_addr != entry_ptr->header.addr ) || - ( ! ( (entry_ptr->header).is_pinned ) ) ) { + ( ! ( (entry_ptr->header).is_pinned ) ) ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, - "%d:%s: Error in H5AC_pin_protected entry().\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, + "%d:%s: Error in H5AC_pin_protected entry().\n", + world_mpi_rank, FUNC); } } if ( global ) { - entry_ptr->global_pinned = TRUE; + entry_ptr->global_pinned = TRUE; - global_pins++; + global_pins++; - } else { + } else { - entry_ptr->local_pinned = TRUE; + entry_ptr->local_pinned = TRUE; - local_pins++; + local_pins++; - } + } HDassert( ((entry_ptr->header).type)->id == DATUM_ENTRY_TYPE ); } @@ -3766,16 +3766,16 @@ pin_protected_entry(int32_t idx, } /* pin_protected_entry() */ #endif /* H5_METADATA_TRACE_FILE */ - + /***************************************************************************** * Function: move_entry() * * Purpose: Move the entry indicated old_idx to the entry indicated - * by new_idex. Touch up the data array so that flush will - * not choke. + * by new_idex. Touch up the data array so that flush will + * not choke. * - * Do nothing if nerrors isn't zero, or if old_idx equals - * new_idx. + * Do nothing if nerrors isn't zero, or if old_idx equals + * new_idx. * * Return: void * @@ -3789,8 +3789,8 @@ move_entry(H5F_t * file_ptr, int32_t new_idx) { herr_t result; - int tmp; - size_t tmp_len; + int tmp; + size_t tmp_len; haddr_t old_addr = HADDR_UNDEF; haddr_t new_addr = HADDR_UNDEF; struct datum * old_entry_ptr; @@ -3818,12 +3818,12 @@ move_entry(H5F_t * file_ptr, /* Moving will mark the entry dirty if it is not already */ old_entry_ptr->dirty = TRUE; - /* touch up versions, base_addrs, and data_index. Do this - * now as it is possible that the rename will trigger a + /* touch up versions, base_addrs, and data_index. Do this + * now as it is possible that the rename will trigger a * sync point. */ if(old_entry_ptr->ver < new_entry_ptr->ver) - old_entry_ptr->ver = new_entry_ptr->ver; + old_entry_ptr->ver = new_entry_ptr->ver; else (old_entry_ptr->ver)++; @@ -3837,11 +3837,11 @@ move_entry(H5F_t * file_ptr, old_entry_ptr->index = new_entry_ptr->index; new_entry_ptr->index = tmp; - if(old_entry_ptr->local_len != new_entry_ptr->local_len) { - tmp_len = old_entry_ptr->local_len; - old_entry_ptr->local_len = new_entry_ptr->local_len; - new_entry_ptr->local_len = tmp_len; - } /* end if */ + if(old_entry_ptr->local_len != new_entry_ptr->local_len) { + tmp_len = old_entry_ptr->local_len; + old_entry_ptr->local_len = new_entry_ptr->local_len; + new_entry_ptr->local_len = tmp_len; + } /* end if */ result = H5AC_move_entry(file_ptr, &(types[0]), old_addr, new_addr, H5AC_ind_read_dxpl_id); @@ -3849,8 +3849,8 @@ move_entry(H5F_t * file_ptr, nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5AC_move_entry() failed.\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: H5AC_move_entry() failed.\n", + world_mpi_rank, FUNC); } } else { @@ -3859,27 +3859,27 @@ move_entry(H5F_t * file_ptr, if ( ! (old_entry_ptr->header.is_dirty) ) { - /* it is possible that we just exceeded the dirty bytes - * threshold, triggering a write of the newly inserted - * entry. Test for this, and only flag an error if this - * is not the case. - */ + /* it is possible that we just exceeded the dirty bytes + * threshold, triggering a write of the newly inserted + * entry. Test for this, and only flag an error if this + * is not the case. + */ - struct H5AC_aux_t * aux_ptr; + struct H5AC_aux_t * aux_ptr; - aux_ptr = ((H5AC_aux_t *)(file_ptr->shared->cache->aux_ptr)); + aux_ptr = ((H5AC_aux_t *)(file_ptr->shared->cache->aux_ptr)); - if ( ! ( ( aux_ptr != NULL ) && - ( aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC ) && - ( aux_ptr->dirty_bytes == 0 ) ) ) { + if ( ! ( ( aux_ptr != NULL ) && + ( aux_ptr->magic == H5AC__H5AC_AUX_T_MAGIC ) && + ( aux_ptr->dirty_bytes == 0 ) ) ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: data[%d].header.is_dirty = %d.\n", - world_mpi_rank, FUNC, new_idx, + world_mpi_rank, FUNC, new_idx, (int)(data[new_idx].header.is_dirty)); - } + } } } else { @@ -3890,19 +3890,19 @@ move_entry(H5F_t * file_ptr, } /* move_entry() */ - + /***************************************************************************** * - * Function: reset_server_counts() + * Function: reset_server_counts() * - * Purpose: Send a message to the server process requesting it to reset - * its counters. Await confirmation message. + * Purpose: Send a message to the server process requesting it to reset + * its counters. Await confirmation message. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/6/10 + * Programmer: JRM -- 5/6/10 * *****************************************************************************/ static hbool_t @@ -3957,7 +3957,7 @@ reset_server_counts(void) nerrors++; success = FALSE; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: Bad data in req r/w counter reset reply.\n", world_mpi_rank, FUNC); } @@ -3968,15 +3968,15 @@ reset_server_counts(void) } /* reset_server_counts() */ - + /***************************************************************************** * Function: resize_entry() * * Purpose: Resize the pinned entry indicated by idx to the new_size. - * Note that new_size must be greater than 0, and must be - * less than or equal to the original size of the entry. + * Note that new_size must be greater than 0, and must be + * less than or equal to the original size of the entry. * - * Do nothing if nerrors isn't zero. + * Do nothing if nerrors isn't zero. * * Return: void * @@ -3986,7 +3986,7 @@ reset_server_counts(void) *****************************************************************************/ static void resize_entry(int32_t idx, - size_t new_size) + size_t new_size) { herr_t result; struct datum * entry_ptr; @@ -4000,21 +4000,21 @@ resize_entry(int32_t idx, HDassert( ((entry_ptr->header).type)->id == DATUM_ENTRY_TYPE ); HDassert( !(entry_ptr->locked) ); - HDassert( ( entry_ptr->global_pinned ) && - ( ! entry_ptr->local_pinned ) ); - HDassert( ( entry_ptr->header.size == entry_ptr->len ) || - ( entry_ptr->header.size == entry_ptr->local_len ) ); - HDassert( new_size > 0 ); - HDassert( new_size <= entry_ptr->len ); + HDassert( ( entry_ptr->global_pinned ) && + ( ! entry_ptr->local_pinned ) ); + HDassert( ( entry_ptr->header.size == entry_ptr->len ) || + ( entry_ptr->header.size == entry_ptr->local_len ) ); + HDassert( new_size > 0 ); + HDassert( new_size <= entry_ptr->len ); - result = H5AC_resize_entry((void *)entry_ptr, new_size); + result = H5AC_resize_entry((void *)entry_ptr, new_size); if ( result < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5AC_resize_entry() failed.\n", - world_mpi_rank, FUNC); + HDfprintf(stdout, "%d:%s: H5AC_resize_entry() failed.\n", + world_mpi_rank, FUNC); } } else { @@ -4024,7 +4024,7 @@ resize_entry(int32_t idx, HDassert( entry_ptr->header.size == new_size ); entry_ptr->dirty = TRUE; - entry_ptr->local_len = new_size; + entry_ptr->local_len = new_size; /* touch up version. */ @@ -4036,24 +4036,24 @@ resize_entry(int32_t idx, } /* resize_entry() */ - + /***************************************************************************** * - * Function: setup_cache_for_test() + * Function: setup_cache_for_test() * - * Purpose: Setup the parallel cache for a test, and return the file id - * and a pointer to the cache's internal data structures. + * Purpose: Setup the parallel cache for a test, and return the file id + * and a pointer to the cache's internal data structures. * - * To do this, we must create a file, flush it (so that we - * don't have to worry about entries in the metadata cache), - * look up the address of the metadata cache, and then instruct - * the cache to omit sanity checks on dxpl IDs. + * To do this, we must create a file, flush it (so that we + * don't have to worry about entries in the metadata cache), + * look up the address of the metadata cache, and then instruct + * the cache to omit sanity checks on dxpl IDs. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/4/06 + * Programmer: JRM -- 1/4/06 * *****************************************************************************/ static hbool_t @@ -4080,13 +4080,13 @@ setup_cache_for_test(hid_t * fid_ptr, if ( fid < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fcreate() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fcreate() failed.\n", world_mpi_rank, FUNC); } } else if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", world_mpi_rank, FUNC); } } else { @@ -4096,7 +4096,7 @@ setup_cache_for_test(hid_t * fid_ptr, if ( file_ptr == NULL ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Can't get file_ptr.\n", + HDfprintf(stdout, "%d:%s: Can't get file_ptr.\n", world_mpi_rank, FUNC); } } else { @@ -4106,13 +4106,13 @@ setup_cache_for_test(hid_t * fid_ptr, if ( cache_ptr == NULL ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Can't get cache_ptr.\n", + HDfprintf(stdout, "%d:%s: Can't get cache_ptr.\n", world_mpi_rank, FUNC); } } else if ( cache_ptr->magic != H5C__H5C_T_MAGIC ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: Bad cache_ptr magic.\n", + HDfprintf(stdout, "%d:%s: Bad cache_ptr magic.\n", world_mpi_rank, FUNC); } } else { @@ -4131,7 +4131,7 @@ setup_cache_for_test(hid_t * fid_ptr, if ( H5AC_get_cache_auto_resize_config(cache_ptr, &config) != SUCCEED ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: H5AC_get_cache_auto_resize_config(1) failed.\n", world_mpi_rank, FUNC); @@ -4141,9 +4141,9 @@ setup_cache_for_test(hid_t * fid_ptr, config.metadata_write_strategy = metadata_write_strategy; if ( H5AC_set_cache_auto_resize_config(cache_ptr, &config) - != SUCCEED ) { + != SUCCEED ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: H5AC_set_cache_auto_resize_config() failed.\n", world_mpi_rank, FUNC); @@ -4166,15 +4166,15 @@ setup_cache_for_test(hid_t * fid_ptr, nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: cache_ptr->aux_ptr == NULL.\n", + HDfprintf(stdout, "%d:%s: cache_ptr->aux_ptr == NULL.\n", world_mpi_rank, FUNC); } - } else if ( ((H5AC_aux_t *)(cache_ptr->aux_ptr))->magic != + } else if ( ((H5AC_aux_t *)(cache_ptr->aux_ptr))->magic != H5AC__H5AC_AUX_T_MAGIC ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: cache_ptr->aux_ptr->magic != H5AC__H5AC_AUX_T_MAGIC.\n", world_mpi_rank, FUNC); } @@ -4183,14 +4183,14 @@ setup_cache_for_test(hid_t * fid_ptr, nerrors++; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: bad cache_ptr->aux_ptr->metadata_write_strategy\n", world_mpi_rank, FUNC); } } } - /* also verify that the expected metadata write strategy is reported + /* also verify that the expected metadata write strategy is reported * when we get the current configuration. */ @@ -4201,25 +4201,25 @@ setup_cache_for_test(hid_t * fid_ptr, if ( H5AC_get_cache_auto_resize_config(cache_ptr, &test_config) != SUCCEED ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: H5AC_get_cache_auto_resize_config(2) failed.\n", world_mpi_rank, FUNC); - } else if ( test_config.metadata_write_strategy != + } else if ( test_config.metadata_write_strategy != metadata_write_strategy ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: unexpected metadata_write_strategy.\n", world_mpi_rank, FUNC); } } } - /* allocate space for test entries -- do this before we set the + /* allocate space for test entries -- do this before we set the * sync point done callback as it will dirty the superblock, requiring * another flush. If the sync point done callback is set, this will * cause a spurious failure. @@ -4232,10 +4232,10 @@ setup_cache_for_test(hid_t * fid_ptr, if ( actual_base_addr == HADDR_UNDEF ) { success = FALSE; - nerrors++; + nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5MF_alloc() failed.\n", + HDfprintf(stdout, "%d:%s: H5MF_alloc() failed.\n", world_mpi_rank, FUNC); } @@ -4246,10 +4246,10 @@ setup_cache_for_test(hid_t * fid_ptr, * if the size of the superblock is increase. */ success = FALSE; - nerrors++; + nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: actual_base_addr > BASE_ADDR.\n", + HDfprintf(stdout, "%d:%s: actual_base_addr > BASE_ADDR.\n", world_mpi_rank, FUNC); } } @@ -4262,7 +4262,7 @@ setup_cache_for_test(hid_t * fid_ptr, if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: second H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: second H5Fflush() failed.\n", world_mpi_rank, FUNC); } } @@ -4272,62 +4272,62 @@ setup_cache_for_test(hid_t * fid_ptr, if ( success ) { - if ( H5AC__set_write_done_callback(cache_ptr, do_sync) != SUCCEED ) { + if ( H5AC__set_write_done_callback(cache_ptr, do_sync) != SUCCEED ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, - "%d:%s: H5C_set_write_done_callback failed.\n", + HDfprintf(stdout, + "%d:%s: H5C_set_write_done_callback failed.\n", world_mpi_rank, FUNC); } - } + } } #endif /* DO_SYNC_AFTER_WRITE */ if ( success ) { - if ( H5AC__set_sync_point_done_callback(cache_ptr, verify_writes) != SUCCEED ) { + if ( H5AC__set_sync_point_done_callback(cache_ptr, verify_writes) != SUCCEED ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, - "%d:%s: H5AC__set_sync_point_done_callback failed.\n", + HDfprintf(stdout, + "%d:%s: H5AC__set_sync_point_done_callback failed.\n", world_mpi_rank, FUNC); } - } + } } return(success); } /* setup_cache_for_test() */ - + /***************************************************************************** * - * Function: verify_writes() + * Function: verify_writes() * - * Purpose: Verify that the indicated entries have been written exactly - * once each, and that the indicated total number of writes - * has been processed by the server process. Flag an error if - * discrepency is noted. Finally reset the counters maintained - * by the server process. + * Purpose: Verify that the indicated entries have been written exactly + * once each, and that the indicated total number of writes + * has been processed by the server process. Flag an error if + * discrepency is noted. Finally reset the counters maintained + * by the server process. * - * This function should only be called by the metadata cache - * as the "sync point done" function, as it must do some - * synchronization to avoid false positives. + * This function should only be called by the metadata cache + * as the "sync point done" function, as it must do some + * synchronization to avoid false positives. * - * Note that at present, this function does not allow for the - * case in which one or more of the indicated entries should - * have been written more than once since the last time the - * server process's counters were reset. That is fine for now, - * as with the current metadata write strategies, no entry - * should be written more than once per sync point. If this - * changes this limitation will have to be revisited. + * Note that at present, this function does not allow for the + * case in which one or more of the indicated entries should + * have been written more than once since the last time the + * server process's counters were reset. That is fine for now, + * as with the current metadata write strategies, no entry + * should be written more than once per sync point. If this + * changes this limitation will have to be revisited. * - * Return: void. + * Return: void. * - * Programmer: JRM -- 5/9/10 + * Programmer: JRM -- 5/9/10 * *****************************************************************************/ static void @@ -4403,7 +4403,7 @@ verify_writes(unsigned num_writes, haddr_t *written_entries_tbl) } /* final barrier to ensure that all processes think that the server - * counters have been reset before we leave the sync point. This + * counters have been reset before we leave the sync point. This * barrier is probaby not necessary at this point in time (5/9/10), * but I can think of at least one likely change to the metadata write * strategies that will require it -- hence its insertion now. @@ -4425,24 +4425,24 @@ verify_writes(unsigned num_writes, haddr_t *written_entries_tbl) } /* verify_writes() */ - + /***************************************************************************** * - * Function: setup_rand() + * Function: setup_rand() * - * Purpose: Use gettimeofday() to obtain a seed for rand(), print the - * seed to stdout, and then pass it to srand(). + * Purpose: Use gettimeofday() to obtain a seed for rand(), print the + * seed to stdout, and then pass it to srand(). * - * Increment nerrors if any errors are detected. + * Increment nerrors if any errors are detected. * - * Return: void. + * Return: void. * - * Programmer: JRM -- 1/12/06 + * Programmer: JRM -- 1/12/06 * * Modifications: * - * JRM -- 5/9/06 - * Modified function to facilitate setting predefined seeds. + * JRM -- 5/9/06 + * Modified function to facilitate setting predefined seeds. * *****************************************************************************/ static void @@ -4457,13 +4457,13 @@ setup_rand(void) if ( ( use_predefined_seeds ) && ( world_mpi_size == num_predefined_seeds ) ) { - HDassert( world_mpi_rank >= 0 ); - HDassert( world_mpi_rank < world_mpi_size ); + HDassert( world_mpi_rank >= 0 ); + HDassert( world_mpi_rank < world_mpi_size ); seed = predefined_seeds[world_mpi_rank]; - HDfprintf(stdout, "%d:%s: predefined_seed = %d.\n", + HDfprintf(stdout, "%d:%s: predefined_seed = %d.\n", world_mpi_rank, FUNC, seed); - fflush(stdout); + fflush(stdout); HDsrand(seed); } else { @@ -4472,7 +4472,7 @@ setup_rand(void) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: gettimeofday() failed.\n", + HDfprintf(stdout, "%d:%s: gettimeofday() failed.\n", world_mpi_rank, FUNC); } } else { @@ -4490,21 +4490,21 @@ setup_rand(void) } /* setup_rand() */ - + /***************************************************************************** * - * Function: take_down_cache() + * Function: take_down_cache() * - * Purpose: Take down the parallel cache after a test. + * Purpose: Take down the parallel cache after a test. * - * To do this, we must close the file, and delete if if - * possible. + * To do this, we must close the file, and delete if if + * possible. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/4/06 + * Programmer: JRM -- 1/4/06 * *****************************************************************************/ static hbool_t @@ -4512,7 +4512,7 @@ take_down_cache(hid_t fid, H5C_t * cache_ptr) { hbool_t success = TRUE; /* will set to FALSE if appropriate. */ - /* flush the file -- this should write out any remaining test + /* flush the file -- this should write out any remaining test * entries in the cache. */ if ( ( success ) && ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) ) { @@ -4525,7 +4525,7 @@ take_down_cache(hid_t fid, H5C_t * cache_ptr) } } - /* Now reset the sync point done callback. Must do this as with + /* Now reset the sync point done callback. Must do this as with * the SWMR mods, the cache will do additional I/O on file close * un-related to the test entries, and thereby corrupt our counts * of entry writes. @@ -4556,7 +4556,7 @@ take_down_cache(hid_t fid, H5C_t * cache_ptr) world_mpi_rank, FUNC); } - } + } if ( success ) { @@ -4573,11 +4573,11 @@ take_down_cache(hid_t fid, H5C_t * cache_ptr) } } else { - /* verify that there have been no further writes of test + /* verify that there have been no further writes of test * entries during the close */ success = verify_total_writes(0); - + } } @@ -4585,19 +4585,19 @@ take_down_cache(hid_t fid, H5C_t * cache_ptr) } /* take_down_cache() */ - + /***************************************************************************** * Function: verify_entry_reads * - * Purpose: Query the server to determine the number of times the - * indicated entry has been read since the last time the - * server counters were reset. + * Purpose: Query the server to determine the number of times the + * indicated entry has been read since the last time the + * server counters were reset. * - * Return TRUE if successful, and if the supplied expected - * number of reads matches the number of reads reported by - * the server process. + * Return TRUE if successful, and if the supplied expected + * number of reads matches the number of reads reported by + * the server process. * - * Return FALSE and flag an error otherwise. + * Return FALSE and flag an error otherwise. * * Return: TRUE if successful, FALSE otherwise. * @@ -4680,31 +4680,31 @@ verify_entry_reads(haddr_t addr, nerrors++; success = FALSE; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: rep/exp entry 0x%llx reads mismatch (%ld/%ld).\n", world_mpi_rank, FUNC, (long long)addr, reported_entry_reads, expected_entry_reads); } - } + } } return(success); } /* verify_entry_reads() */ - + /***************************************************************************** * Function: verify_entry_writes * - * Purpose: Query the server to determine the number of times the - * indicated entry has been written since the last time the - * server counters were reset. + * Purpose: Query the server to determine the number of times the + * indicated entry has been written since the last time the + * server counters were reset. * - * Return TRUE if successful, and if the supplied expected - * number of reads matches the number of reads reported by - * the server process. + * Return TRUE if successful, and if the supplied expected + * number of reads matches the number of reads reported by + * the server process. * - * Return FALSE and flag an error otherwise. + * Return FALSE and flag an error otherwise. * * Return: TRUE if successful, FALSE otherwise. * @@ -4787,36 +4787,36 @@ verify_entry_writes(haddr_t addr, nerrors++; success = FALSE; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: rep/exp entry 0x%llx writes mismatch (%ld/%ld).\n", world_mpi_rank, FUNC, (long long)addr, reported_entry_writes, expected_entry_writes); } - } + } } return(success); } /* verify_entry_writes() */ - + /***************************************************************************** * - * Function: verify_total_reads() + * Function: verify_total_reads() * - * Purpose: Query the server to obtain the total reads since the last - * server counter reset, and compare this value with the supplied - * expected value. + * Purpose: Query the server to obtain the total reads since the last + * server counter reset, and compare this value with the supplied + * expected value. * - * If the values match, return TRUE. + * If the values match, return TRUE. * - * If the values don't match, flag an error and return FALSE. + * If the values don't match, flag an error and return FALSE. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/6/10 + * Programmer: JRM -- 5/6/10 * *****************************************************************************/ static hbool_t @@ -4887,9 +4887,9 @@ verify_total_reads(int expected_total_reads) nerrors++; success = FALSE; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: reported/expected total reads mismatch (%ld/%ld).\n", - world_mpi_rank, FUNC, + world_mpi_rank, FUNC, reported_total_reads, expected_total_reads); } @@ -4900,24 +4900,24 @@ verify_total_reads(int expected_total_reads) } /* verify_total_reads() */ - + /***************************************************************************** * - * Function: verify_total_writes() + * Function: verify_total_writes() * - * Purpose: Query the server to obtain the total writes since the last - * server counter reset, and compare this value with the supplied - * expected value. + * Purpose: Query the server to obtain the total writes since the last + * server counter reset, and compare this value with the supplied + * expected value. * - * If the values match, return TRUE. + * If the values match, return TRUE. * - * If the values don't match, flag an error and return FALSE. + * If the values don't match, flag an error and return FALSE. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/6/10 + * Programmer: JRM -- 5/6/10 * *****************************************************************************/ static hbool_t @@ -4988,9 +4988,9 @@ verify_total_writes(unsigned expected_total_writes) nerrors++; success = FALSE; if ( verbose ) { - HDfprintf(stdout, + HDfprintf(stdout, "%d:%s: reported/expected total writes mismatch (%u/%u).\n", - world_mpi_rank, FUNC, + world_mpi_rank, FUNC, reported_total_writes, expected_total_writes); } } @@ -5000,7 +5000,7 @@ verify_total_writes(unsigned expected_total_writes) } /* verify_total_writes() */ - + /***************************************************************************** * Function: unlock_entry() * @@ -5015,8 +5015,8 @@ verify_total_writes(unsigned expected_total_writes) * * Modifications: * - * 7/11/06 - * Updated for the new local_len field in datum. + * 7/11/06 + * Updated for the new local_len field in datum. * *****************************************************************************/ static void @@ -5036,7 +5036,7 @@ unlock_entry(H5F_t * file_ptr, entry_ptr = &(data[idx]); - HDassert( entry_ptr->locked ); + HDassert( entry_ptr->locked ); dirtied = ((flags & H5AC__DIRTIED_FLAG) == H5AC__DIRTIED_FLAG ); @@ -5052,7 +5052,7 @@ unlock_entry(H5F_t * file_ptr, if ( ( result < 0 ) || ( entry_ptr->header.type != &(types[0]) ) || ( ( entry_ptr->len != entry_ptr->header.size ) && - ( entry_ptr->local_len != entry_ptr->header.size ) ) || + ( entry_ptr->local_len != entry_ptr->header.size ) ) || ( entry_ptr->base_addr != entry_ptr->header.addr ) ) { nerrors++; @@ -5064,7 +5064,7 @@ unlock_entry(H5F_t * file_ptr, entry_ptr->locked = FALSE; - } + } HDassert( ((entry_ptr->header).type)->id == DATUM_ENTRY_TYPE ); @@ -5085,7 +5085,7 @@ unlock_entry(H5F_t * file_ptr, } /* unlock_entry() */ - + /***************************************************************************** * Function: unpin_entry() * @@ -5100,8 +5100,8 @@ unlock_entry(H5F_t * file_ptr, * * Modifications: * - * JRM -- 8/15/06 - * Added assertion that entry is pinned on entry. + * JRM -- 8/15/06 + * Added assertion that entry is pinned on entry. * *****************************************************************************/ static void @@ -5123,54 +5123,54 @@ unpin_entry(H5F_t * file_ptr, entry_ptr = &(data[idx]); - HDassert( (entry_ptr->header).is_pinned ); - HDassert ( ! ( entry_ptr->global_pinned && entry_ptr->local_pinned) ); - HDassert ( ( global && entry_ptr->global_pinned ) || - ( ! global && entry_ptr->local_pinned ) ); - HDassert ( ! ( dirty && ( ! global ) ) ); + HDassert( (entry_ptr->header).is_pinned ); + HDassert ( ! ( entry_ptr->global_pinned && entry_ptr->local_pinned) ); + HDassert ( ( global && entry_ptr->global_pinned ) || + ( ! global && entry_ptr->local_pinned ) ); + HDassert ( ! ( dirty && ( ! global ) ) ); - if ( via_unprotect ) { + if ( via_unprotect ) { - lock_entry(file_ptr, idx); + lock_entry(file_ptr, idx); - if ( dirty ) { + if ( dirty ) { - flags |= H5AC__DIRTIED_FLAG; - } + flags |= H5AC__DIRTIED_FLAG; + } - unlock_entry(file_ptr, idx, flags); + unlock_entry(file_ptr, idx, flags); - } else { + } else { - if ( dirty ) { + if ( dirty ) { - mark_entry_dirty(idx); + mark_entry_dirty(idx); - } + } - result = H5AC_unpin_entry(entry_ptr); + result = H5AC_unpin_entry(entry_ptr); - if ( result < 0 ) { + if ( result < 0 ) { nerrors++; if ( verbose ) { HDfprintf(stdout, "%d:%s: error in H5AC_unpin_entry().\n", - world_mpi_rank, FUNC); + world_mpi_rank, FUNC); } - } - } + } + } HDassert( ! ((entry_ptr->header).is_pinned) ); - if ( global ) { + if ( global ) { - entry_ptr->global_pinned = FALSE; + entry_ptr->global_pinned = FALSE; - } else { + } else { - entry_ptr->local_pinned = FALSE; + entry_ptr->local_pinned = FALSE; - } + } } return; @@ -5182,18 +5182,18 @@ unpin_entry(H5F_t * file_ptr, /****************************** test functions *******************************/ /*****************************************************************************/ - + /***************************************************************************** * - * Function: server_smoke_check() + * Function: server_smoke_check() * - * Purpose: Quick smoke check for the server process. + * Purpose: Quick smoke check for the server process. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 12/21/05 + * Programmer: JRM -- 12/21/05 * *****************************************************************************/ static hbool_t @@ -5214,12 +5214,12 @@ server_smoke_check(void) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -5285,9 +5285,9 @@ server_smoke_check(void) #endif /* DO_WRITE_REQ_ACK */ - do_sync(); + do_sync(); - /* barrier to allow all writes to complete */ + /* barrier to allow all writes to complete */ if ( MPI_SUCCESS != MPI_Barrier(file_mpi_comm) ) { success = FALSE; @@ -5302,12 +5302,12 @@ server_smoke_check(void) if ( success ) { success = verify_entry_writes(data[world_mpi_rank].base_addr, 1); - } + } if ( success ) { success = verify_entry_reads(data[world_mpi_rank].base_addr, 0); - } + } if ( success ) { @@ -5319,7 +5319,7 @@ server_smoke_check(void) success = verify_total_reads(0); } - /* barrier to allow all writes to complete */ + /* barrier to allow all writes to complete */ if ( MPI_SUCCESS != MPI_Barrier(file_mpi_comm) ) { success = FALSE; @@ -5391,7 +5391,7 @@ server_smoke_check(void) } } - /* barrier to allow all writes to complete */ + /* barrier to allow all writes to complete */ if ( MPI_SUCCESS != MPI_Barrier(file_mpi_comm) ) { success = FALSE; @@ -5406,12 +5406,12 @@ server_smoke_check(void) if ( success ) { success = verify_entry_writes(data[world_mpi_rank].base_addr, 1); - } + } if ( success ) { success = verify_entry_reads(data[world_mpi_rank].base_addr, 1); - } + } if ( success ) { @@ -5455,12 +5455,12 @@ server_smoke_check(void) if ( success ) { success = verify_entry_writes(data[world_mpi_rank].base_addr, 0); - } + } if ( success ) { success = verify_entry_reads(data[world_mpi_rank].base_addr, 0); - } + } if ( success ) { @@ -5513,9 +5513,9 @@ server_smoke_check(void) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -5530,18 +5530,18 @@ server_smoke_check(void) } /* server_smoke_check() */ - + /***************************************************************************** * - * Function: smoke_check_1() + * Function: smoke_check_1() * - * Purpose: First smoke check for the parallel cache. + * Purpose: First smoke check for the parallel cache. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/4/06 + * Programmer: JRM -- 1/4/06 * *****************************************************************************/ static hbool_t @@ -5557,23 +5557,23 @@ smoke_check_1(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #1 -- process 0 only md write strategy"); + TESTING("smoke check #1 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #1 -- distributed md write strategy"); + TESTING("smoke check #1 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #1 -- unknown md write strategy"); + TESTING("smoke check #1 -- unknown md write strategy"); } - break; + break; } nerrors = 0; @@ -5582,12 +5582,12 @@ smoke_check_1(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -5601,7 +5601,7 @@ smoke_check_1(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -5613,24 +5613,24 @@ smoke_check_1(int metadata_write_strategy) for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); } /* Move the first half of the entries... */ for ( i = 0; i < (virt_num_data_entries / 2); i++ ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); } /* ...and then move them back. */ for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); } if ( fid >= 0 ) { @@ -5639,7 +5639,7 @@ smoke_check_1(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -5685,9 +5685,9 @@ smoke_check_1(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -5702,21 +5702,21 @@ smoke_check_1(int metadata_write_strategy) } /* smoke_check_1() */ - + /***************************************************************************** * - * Function: smoke_check_2() + * Function: smoke_check_2() * - * Purpose: Second smoke check for the parallel cache. + * Purpose: Second smoke check for the parallel cache. * - * Introduce random reads, but keep all processes with roughly - * the same work load. + * Introduce random reads, but keep all processes with roughly + * the same work load. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/12/06 + * Programmer: JRM -- 1/12/06 * *****************************************************************************/ static hbool_t @@ -5732,23 +5732,23 @@ smoke_check_2(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #2 -- process 0 only md write strategy"); + TESTING("smoke check #2 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #2 -- distributed md write strategy"); + TESTING("smoke check #2 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #2 -- unknown md write strategy"); + TESTING("smoke check #2 -- unknown md write strategy"); } - break; + break; } nerrors = 0; @@ -5757,12 +5757,12 @@ smoke_check_2(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -5776,7 +5776,7 @@ smoke_check_2(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -5787,73 +5787,73 @@ smoke_check_2(int metadata_write_strategy) if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, 0, 10); + lock_and_unlock_random_entries(file_ptr, (i - 100), i, 0, 10); } } - for ( i = 0; i < (virt_num_data_entries / 2); i+=61 ) - { - /* Make sure we don't step on any locally pinned entries */ - if ( data[i].local_pinned ) { - unpin_entry(file_ptr, i, FALSE, FALSE, FALSE); - } + for ( i = 0; i < (virt_num_data_entries / 2); i+=61 ) + { + /* Make sure we don't step on any locally pinned entries */ + if ( data[i].local_pinned ) { + unpin_entry(file_ptr, i, FALSE, FALSE, FALSE); + } - pin_entry(file_ptr, i, TRUE, FALSE); - } + pin_entry(file_ptr, i, TRUE, FALSE); + } for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-=2 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 20), - 0, 100); - local_pin_and_unpin_random_entries(file_ptr, 0, - (virt_num_data_entries / 4), - 0, 3); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 20), + 0, 100); + local_pin_and_unpin_random_entries(file_ptr, 0, + (virt_num_data_entries / 4), + 0, 3); } for ( i = 0; i < (virt_num_data_entries / 2); i+=2 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 10), - 0, 100); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 10), + 0, 100); } - /* we can't move pinned entries, so release any local pins now. */ - local_unpin_all_entries(file_ptr, FALSE); + /* we can't move pinned entries, so release any local pins now. */ + local_unpin_all_entries(file_ptr, FALSE); /* Move the first half of the entries... */ for ( i = 0; i < (virt_num_data_entries / 2); i++ ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - ((virt_num_data_entries / 50) - 1), + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + ((virt_num_data_entries / 50) - 1), 0, 100); } /* ...and then move them back. */ for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 100), - 0, 100); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 100), + 0, 100); } - for ( i = 0; i < (virt_num_data_entries / 2); i+=61 ) - { - hbool_t via_unprotect = ( (((unsigned)i) & 0x01) == 0 ); - hbool_t dirty = ( (((unsigned)i) & 0x02) == 0 ); + for ( i = 0; i < (virt_num_data_entries / 2); i+=61 ) + { + hbool_t via_unprotect = ( (((unsigned)i) & 0x01) == 0 ); + hbool_t dirty = ( (((unsigned)i) & 0x02) == 0 ); - unpin_entry(file_ptr, i, TRUE, dirty, via_unprotect); - } + unpin_entry(file_ptr, i, TRUE, dirty, via_unprotect); + } if ( fid >= 0 ) { @@ -5861,7 +5861,7 @@ smoke_check_2(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -5907,9 +5907,9 @@ smoke_check_2(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -5924,24 +5924,24 @@ smoke_check_2(int metadata_write_strategy) } /* smoke_check_2() */ - + /***************************************************************************** * - * Function: smoke_check_3() + * Function: smoke_check_3() * - * Purpose: Third smoke check for the parallel cache. + * Purpose: Third smoke check for the parallel cache. * - * Use random reads to vary the loads on the diffferent - * processors. Also force different cache size adjustments. + * Use random reads to vary the loads on the diffferent + * processors. Also force different cache size adjustments. * - * In this test, load process 0 heavily, and the other - * processes lightly. + * In this test, load process 0 heavily, and the other + * processes lightly. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/13/06 + * Programmer: JRM -- 1/13/06 * *****************************************************************************/ static hbool_t @@ -5961,23 +5961,23 @@ smoke_check_3(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #3 -- process 0 only md write strategy"); + TESTING("smoke check #3 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #3 -- distributed md write strategy"); + TESTING("smoke check #3 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #3 -- unknown md write strategy"); + TESTING("smoke check #3 -- unknown md write strategy"); } - break; + break; } nerrors = 0; @@ -5986,12 +5986,12 @@ smoke_check_3(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -6005,7 +6005,7 @@ smoke_check_3(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -6019,7 +6019,7 @@ smoke_check_3(int metadata_write_strategy) if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } } @@ -6029,48 +6029,48 @@ smoke_check_3(int metadata_write_strategy) max_count = min_count + 50; for ( i = (virt_num_data_entries / 4); - i < (virt_num_data_entries / 2); - i++ ) + i < (virt_num_data_entries / 2); + i++ ) { insert_entry(cache_ptr, file_ptr, i, H5AC__NO_FLAGS_SET); - if ( i % 59 == 0 ) { + if ( i % 59 == 0 ) { - hbool_t dirty = ( (i % 2) == 0); + hbool_t dirty = ( (i % 2) == 0); - if ( data[i].local_pinned ) { - unpin_entry(file_ptr, i, FALSE, FALSE, FALSE); - } + if ( data[i].local_pinned ) { + unpin_entry(file_ptr, i, FALSE, FALSE, FALSE); + } - pin_entry(file_ptr, i, TRUE, dirty); + pin_entry(file_ptr, i, TRUE, dirty); - HDassert( !dirty || data[i].header.is_dirty ); - HDassert( data[i].header.is_pinned ); - HDassert( data[i].global_pinned ); - HDassert( ! data[i].local_pinned ); - } + HDassert( !dirty || data[i].header.is_dirty ); + HDassert( data[i].header.is_pinned ); + HDassert( data[i].global_pinned ); + HDassert( ! data[i].local_pinned ); + } if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } - local_pin_and_unpin_random_entries(file_ptr, 0, + local_pin_and_unpin_random_entries(file_ptr, 0, virt_num_data_entries / 4, - 0, (file_mpi_rank + 2)); + 0, (file_mpi_rank + 2)); - } + } - /* flush the file to be sure that we have no problems flushing - * pinned entries - */ + /* flush the file to be sure that we have no problems flushing + * pinned entries + */ if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", world_mpi_rank, FUNC); } } @@ -6086,27 +6086,27 @@ smoke_check_3(int metadata_write_strategy) for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - if ( ( i >= (virt_num_data_entries / 4) ) && ( i % 59 == 0 ) ) { + if ( ( i >= (virt_num_data_entries / 4) ) && ( i % 59 == 0 ) ) { hbool_t via_unprotect = ( (((unsigned)i) & 0x02) == 0 ); - hbool_t dirty = ( (((unsigned)i) & 0x04) == 0 ); - - HDassert( data[i].global_pinned ); - HDassert( ! data[i].local_pinned ); - - unpin_entry(file_ptr, i, TRUE, dirty, - via_unprotect); - } - if ( i % 2 == 0 ) { - - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - local_pin_and_unpin_random_entries(file_ptr, 0, - virt_num_data_entries / 2, - 0, 2); - lock_and_unlock_random_entries(file_ptr, + hbool_t dirty = ( (((unsigned)i) & 0x04) == 0 ); + + HDassert( data[i].global_pinned ); + HDassert( ! data[i].local_pinned ); + + unpin_entry(file_ptr, i, TRUE, dirty, + via_unprotect); + } + if ( i % 2 == 0 ) { + + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + local_pin_and_unpin_random_entries(file_ptr, 0, + virt_num_data_entries / 2, + 0, 2); + lock_and_unlock_random_entries(file_ptr, min_idx, max_idx, 0, 100); - } + } } min_idx = 0; @@ -6119,9 +6119,9 @@ smoke_check_3(int metadata_write_strategy) for ( i = 0; i < (virt_num_data_entries / 2); i+=2 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - lock_and_unlock_random_entries(file_ptr, + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + lock_and_unlock_random_entries(file_ptr, min_idx, max_idx, 0, 100); } @@ -6134,22 +6134,22 @@ smoke_check_3(int metadata_write_strategy) /* move the first half of the entries... */ for ( i = 0; i < (virt_num_data_entries / 2); i++ ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 20), + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 20), min_count, max_count); } /* ...and then move them back. */ for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 40), + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 40), min_count, max_count); } @@ -6161,16 +6161,16 @@ smoke_check_3(int metadata_write_strategy) for ( i = 0; i < (virt_num_data_entries / 2); i+=2 ) { - local_pin_and_unpin_random_entries(file_ptr, 0, - (virt_num_data_entries / 2), - 0, 5); + local_pin_and_unpin_random_entries(file_ptr, 0, + (virt_num_data_entries / 2), + 0, 5); - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } } @@ -6184,7 +6184,7 @@ smoke_check_3(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -6231,9 +6231,9 @@ smoke_check_3(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -6248,24 +6248,24 @@ smoke_check_3(int metadata_write_strategy) } /* smoke_check_3() */ - + /***************************************************************************** * - * Function: smoke_check_4() + * Function: smoke_check_4() * - * Purpose: Fourth smoke check for the parallel cache. + * Purpose: Fourth smoke check for the parallel cache. * - * Use random reads to vary the loads on the diffferent - * processors. Also force different cache size adjustments. + * Use random reads to vary the loads on the diffferent + * processors. Also force different cache size adjustments. * - * In this test, load process 0 lightly, and the other - * processes heavily. + * In this test, load process 0 lightly, and the other + * processes heavily. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/13/06 + * Programmer: JRM -- 1/13/06 * *****************************************************************************/ static hbool_t @@ -6285,23 +6285,23 @@ smoke_check_4(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #4 -- process 0 only md write strategy"); + TESTING("smoke check #4 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #4 -- distributed md write strategy"); + TESTING("smoke check #4 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #4 -- unknown md write strategy"); + TESTING("smoke check #4 -- unknown md write strategy"); } - break; + break; } nerrors = 0; @@ -6310,12 +6310,12 @@ smoke_check_4(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -6329,7 +6329,7 @@ smoke_check_4(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -6344,7 +6344,7 @@ smoke_check_4(int metadata_write_strategy) if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } } @@ -6353,23 +6353,23 @@ smoke_check_4(int metadata_write_strategy) max_count = min_count + 100; for ( i = (virt_num_data_entries / 4); - i < (virt_num_data_entries / 2); - i++ ) + i < (virt_num_data_entries / 2); + i++ ) { - if ( i % 2 == 0 ) { + if ( i % 2 == 0 ) { insert_entry(cache_ptr, file_ptr, i, H5AC__NO_FLAGS_SET); - } else { + } else { - /* Insert some entries pinned, and then unpin them - * immediately. We have tested pinned entries elsewhere, - * so it should be sufficient to verify that the - * entries are in fact pinned (which unpin_entry() should do). - */ + /* Insert some entries pinned, and then unpin them + * immediately. We have tested pinned entries elsewhere, + * so it should be sufficient to verify that the + * entries are in fact pinned (which unpin_entry() should do). + */ insert_entry(cache_ptr, file_ptr, i, H5C__PIN_ENTRY_FLAG); unpin_entry(file_ptr, i, TRUE, FALSE, FALSE); - } + } if ( i % 59 == 0 ) { @@ -6389,19 +6389,19 @@ smoke_check_4(int metadata_write_strategy) if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } local_pin_and_unpin_random_entries(file_ptr, 0, - (virt_num_data_entries / 4), + (virt_num_data_entries / 4), 0, (file_mpi_rank + 2)); } /* flush the file to be sure that we have no problems flushing - * pinned entries - */ + * pinned entries + */ if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { @@ -6428,13 +6428,13 @@ smoke_check_4(int metadata_write_strategy) unpin_entry(file_ptr, i, TRUE, dirty, via_unprotect); } - if ( i % 2 == 0 ) { + if ( i % 2 == 0 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - lock_and_unlock_random_entries(file_ptr, + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + lock_and_unlock_random_entries(file_ptr, min_idx, max_idx, 0, 100); - } + } } min_idx = 0; @@ -6443,14 +6443,14 @@ smoke_check_4(int metadata_write_strategy) for ( i = 0; i < (virt_num_data_entries / 2); i+=2 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - lock_and_unlock_random_entries(file_ptr, + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + lock_and_unlock_random_entries(file_ptr, min_idx, max_idx, 0, 100); } - /* we can't move pinned entries, so release any local pins now. */ - local_unpin_all_entries(file_ptr, FALSE); + /* we can't move pinned entries, so release any local pins now. */ + local_unpin_all_entries(file_ptr, FALSE); min_count = 10 * (file_mpi_rank % 4); max_count = min_count + 100; @@ -6458,22 +6458,22 @@ smoke_check_4(int metadata_write_strategy) /* move the first half of the entries... */ for ( i = 0; i < (virt_num_data_entries / 2); i++ ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 20), + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 20), min_count, max_count); } /* ...and then move them back. */ for ( i = (virt_num_data_entries / 2) - 1; i >= 0; i-- ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); - lock_and_unlock_random_entries(file_ptr, 0, - (virt_num_data_entries / 40), + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + move_entry(file_ptr, i, (i + (virt_num_data_entries / 2))); + lock_and_unlock_random_entries(file_ptr, 0, + (virt_num_data_entries / 40), min_count, max_count); } @@ -6485,12 +6485,12 @@ smoke_check_4(int metadata_write_strategy) for ( i = 0; i < (virt_num_data_entries / 2); i+=2 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); if ( i > 100 ) { - lock_and_unlock_random_entries(file_ptr, (i - 100), i, + lock_and_unlock_random_entries(file_ptr, (i - 100), i, min_count, max_count); } } @@ -6501,7 +6501,7 @@ smoke_check_4(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -6548,9 +6548,9 @@ smoke_check_4(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -6565,19 +6565,19 @@ smoke_check_4(int metadata_write_strategy) } /* smoke_check_4() */ - + /***************************************************************************** * - * Function: smoke_check_5() + * Function: smoke_check_5() * - * Purpose: Similar to smoke check 1, but modified to verify that - * H5AC_mark_entry_dirty() works in the parallel case. + * Purpose: Similar to smoke check 1, but modified to verify that + * H5AC_mark_entry_dirty() works in the parallel case. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 5/18/06 + * Programmer: JRM -- 5/18/06 * *****************************************************************************/ static hbool_t @@ -6593,23 +6593,23 @@ smoke_check_5(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #5 -- process 0 only md write strategy"); + TESTING("smoke check #5 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #5 -- distributed md write strategy"); + TESTING("smoke check #5 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #5 -- unknown md write strategy"); + TESTING("smoke check #5 -- unknown md write strategy"); } - break; + break; } @@ -6619,12 +6619,12 @@ smoke_check_5(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -6639,7 +6639,7 @@ smoke_check_5(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -6649,60 +6649,60 @@ smoke_check_5(int metadata_write_strategy) insert_entry(cache_ptr, file_ptr, i, H5AC__NO_FLAGS_SET); } - /* flush the file so we can lock known clean entries. */ + /* flush the file so we can lock known clean entries. */ if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", world_mpi_rank, FUNC); } } for ( i = 0; i < (virt_num_data_entries / 4); i++ ) { - lock_entry(file_ptr, i); + lock_entry(file_ptr, i); - if ( i % 2 == 0 ) - { - mark_entry_dirty(i); - } + if ( i % 2 == 0 ) + { + mark_entry_dirty(i); + } - unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); + unlock_entry(file_ptr, i, H5AC__NO_FLAGS_SET); - if ( i % 2 == 1 ) - { - if ( i % 4 == 1 ) { + if ( i % 2 == 1 ) + { + if ( i % 4 == 1 ) { - lock_entry(file_ptr, i); - unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); - } + lock_entry(file_ptr, i); + unlock_entry(file_ptr, i, H5AC__DIRTIED_FLAG); + } - expunge_entry(file_ptr, i); - } + expunge_entry(file_ptr, i); + } } for ( i = (virt_num_data_entries / 2) - 1; i >= (virt_num_data_entries / 4); - i-- ) + i-- ) { - pin_entry(file_ptr, i, TRUE, FALSE); + pin_entry(file_ptr, i, TRUE, FALSE); - if ( i % 2 == 0 ) - { - if ( i % 8 <= 4 ) { + if ( i % 2 == 0 ) + { + if ( i % 8 <= 4 ) { - resize_entry(i, data[i].len / 2); - } + resize_entry(i, data[i].len / 2); + } mark_entry_dirty(i); - if ( i % 8 <= 4 ) { + if ( i % 8 <= 4 ) { - resize_entry(i, data[i].len); - } - } + resize_entry(i, data[i].len); + } + } - unpin_entry(file_ptr, i, TRUE, FALSE, FALSE); + unpin_entry(file_ptr, i, TRUE, FALSE, FALSE); } if ( fid >= 0 ) { @@ -6711,7 +6711,7 @@ smoke_check_5(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -6757,9 +6757,9 @@ smoke_check_5(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -6774,10 +6774,10 @@ smoke_check_5(int metadata_write_strategy) } /* smoke_check_5() */ - + /***************************************************************************** * - * Function: trace_file_check() + * Function: trace_file_check() * * Purpose: A basic test of the trace file capability. In essence, * we invoke all operations that generate trace file output, @@ -6807,11 +6807,11 @@ smoke_check_5(int metadata_write_strategy) * * This test is skipped if H5_METADATA_TRACE_FILE is undefined. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 6/13/06 + * Programmer: JRM -- 6/13/06 * *****************************************************************************/ static hbool_t @@ -6896,25 +6896,25 @@ trace_file_check(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: #ifdef H5_METADATA_TRACE_FILE expected_output = &expected_output_0; #endif /* H5_METADATA_TRACE_FILE */ if ( world_mpi_rank == 0 ) { - TESTING( - "trace file collection -- process 0 only md write strategy"); + TESTING( + "trace file collection -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: #ifdef H5_METADATA_TRACE_FILE expected_output = &expected_output_1; #endif /* H5_METADATA_TRACE_FILE */ if ( world_mpi_rank == 0 ) { - TESTING( - "trace file collection -- distributed md write strategy"); + TESTING( + "trace file collection -- distributed md write strategy"); } - break; + break; default: #ifdef H5_METADATA_TRACE_FILE @@ -6924,9 +6924,9 @@ trace_file_check(int metadata_write_strategy) expected_output = &expected_output_0; #endif /* H5_METADATA_TRACE_FILE */ if ( world_mpi_rank == 0 ) { - TESTING("trace file collection -- unknown md write strategy"); + TESTING("trace file collection -- unknown md write strategy"); } - break; + break; } #ifdef H5_METADATA_TRACE_FILE @@ -6937,12 +6937,12 @@ trace_file_check(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -6957,7 +6957,7 @@ trace_file_check(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -6969,58 +6969,58 @@ trace_file_check(int metadata_write_strategy) if ( H5AC_get_cache_auto_resize_config(cache_ptr, &config) != SUCCEED ) { - nerrors++; - HDfprintf(stdout, + nerrors++; + HDfprintf(stdout, "%d:%s: H5AC_get_cache_auto_resize_config() failed.\n", world_mpi_rank, FUNC); } else { config.open_trace_file = TRUE; - strcpy(config.trace_file_name, "t_cache_trace.txt"); + strcpy(config.trace_file_name, "t_cache_trace.txt"); if ( H5AC_set_cache_auto_resize_config(cache_ptr, &config) - != SUCCEED ) { + != SUCCEED ) { - nerrors++; - HDfprintf(stdout, + nerrors++; + HDfprintf(stdout, "%d:%s: H5AC_set_cache_auto_resize_config() failed.\n", world_mpi_rank, FUNC); } } } - insert_entry(cache_ptr, file_ptr, 0, H5AC__NO_FLAGS_SET); - insert_entry(cache_ptr, file_ptr, 1, H5AC__NO_FLAGS_SET); - insert_entry(cache_ptr, file_ptr, 2, H5AC__NO_FLAGS_SET); - insert_entry(cache_ptr, file_ptr, 3, H5AC__NO_FLAGS_SET); + insert_entry(cache_ptr, file_ptr, 0, H5AC__NO_FLAGS_SET); + insert_entry(cache_ptr, file_ptr, 1, H5AC__NO_FLAGS_SET); + insert_entry(cache_ptr, file_ptr, 2, H5AC__NO_FLAGS_SET); + insert_entry(cache_ptr, file_ptr, 3, H5AC__NO_FLAGS_SET); - lock_entry(file_ptr, 0); - mark_entry_dirty(0); - unlock_entry(file_ptr, 0, H5AC__NO_FLAGS_SET); + lock_entry(file_ptr, 0); + mark_entry_dirty(0); + unlock_entry(file_ptr, 0, H5AC__NO_FLAGS_SET); - lock_entry(file_ptr, 1); + lock_entry(file_ptr, 1); pin_protected_entry(1, TRUE); - unlock_entry(file_ptr, 1, H5AC__NO_FLAGS_SET); + unlock_entry(file_ptr, 1, H5AC__NO_FLAGS_SET); unpin_entry(file_ptr, 1, TRUE, FALSE, FALSE); expunge_entry(file_ptr, 1); - lock_entry(file_ptr, 2); + lock_entry(file_ptr, 2); pin_protected_entry(2, TRUE); - unlock_entry(file_ptr, 2, H5AC__NO_FLAGS_SET); - mark_entry_dirty(2); + unlock_entry(file_ptr, 2, H5AC__NO_FLAGS_SET); + mark_entry_dirty(2); resize_entry(2, data[2].len / 2); resize_entry(2, data[2].len); unpin_entry(file_ptr, 2, TRUE, FALSE, FALSE); - move_entry(file_ptr, 0, 20); - move_entry(file_ptr, 0, 20); + move_entry(file_ptr, 0, 20); + move_entry(file_ptr, 0, 20); if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", world_mpi_rank, FUNC); } } @@ -7032,8 +7032,8 @@ trace_file_check(int metadata_write_strategy) if ( H5AC_get_cache_auto_resize_config(cache_ptr, &config) != SUCCEED ) { - nerrors++; - HDfprintf(stdout, + nerrors++; + HDfprintf(stdout, "%d:%s: H5AC_get_cache_auto_resize_config() failed.\n", world_mpi_rank, FUNC); @@ -7041,13 +7041,13 @@ trace_file_check(int metadata_write_strategy) config.open_trace_file = FALSE; config.close_trace_file = TRUE; - config.trace_file_name[0] = '\0'; + config.trace_file_name[0] = '\0'; if ( H5AC_set_cache_auto_resize_config(cache_ptr, &config) - != SUCCEED ) { + != SUCCEED ) { - nerrors++; - HDfprintf(stdout, + nerrors++; + HDfprintf(stdout, "%d:%s: H5AC_set_cache_auto_resize_config() failed.\n", world_mpi_rank, FUNC); } @@ -7060,7 +7060,7 @@ trace_file_check(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -7103,10 +7103,10 @@ trace_file_check(int metadata_write_strategy) if ( nerrors == 0 ) { - sprintf(trace_file_name, "t_cache_trace.txt.%d", - (int)file_mpi_rank); + sprintf(trace_file_name, "t_cache_trace.txt.%d", + (int)file_mpi_rank); - if ( (trace_file_ptr = HDfopen(trace_file_name, "r")) == NULL ) { + if ( (trace_file_ptr = HDfopen(trace_file_name, "r")) == NULL ) { nerrors++; if ( verbose ) { @@ -7114,59 +7114,59 @@ trace_file_check(int metadata_write_strategy) world_mpi_rank, FUNC); } } - } + } - i = 0; - while ( ( nerrors == 0 ) && ( ! done ) ) - { - if ( (*expected_output)[i] == NULL ) { + i = 0; + while ( ( nerrors == 0 ) && ( ! done ) ) + { + if ( (*expected_output)[i] == NULL ) { - expected_line_len = 0; + expected_line_len = 0; - } else { + } else { - expected_line_len = HDstrlen((*expected_output)[i]); - } + expected_line_len = HDstrlen((*expected_output)[i]); + } - if ( HDfgets(buffer, 255, trace_file_ptr) != NULL ) { + if ( HDfgets(buffer, 255, trace_file_ptr) != NULL ) { - actual_line_len = strlen(buffer); + actual_line_len = strlen(buffer); - } else { + } else { - actual_line_len = 0; - } + actual_line_len = 0; + } - if ( ( actual_line_len == 0 ) && ( expected_line_len == 0 ) ) { + if ( ( actual_line_len == 0 ) && ( expected_line_len == 0 ) ) { - done = TRUE; + done = TRUE; - } else if ( ( actual_line_len != expected_line_len ) || - ( HDstrcmp(buffer, (*expected_output)[i]) != 0 ) ) { + } else if ( ( actual_line_len != expected_line_len ) || + ( HDstrcmp(buffer, (*expected_output)[i]) != 0 ) ) { - nerrors++; + nerrors++; if ( verbose ) { HDfprintf(stdout, - "%d:%s: Unexpected data in trace file line %d.\n", + "%d:%s: Unexpected data in trace file line %d.\n", world_mpi_rank, FUNC, i); - HDfprintf(stdout, "%d:%s: expected = \"%s\" %d\n", - world_mpi_rank, FUNC, (*expected_output)[i], - expected_line_len); - HDfprintf(stdout, "%d:%s: actual = \"%s\" %d\n", - world_mpi_rank, FUNC, buffer, - actual_line_len); + HDfprintf(stdout, "%d:%s: expected = \"%s\" %d\n", + world_mpi_rank, FUNC, (*expected_output)[i], + expected_line_len); + HDfprintf(stdout, "%d:%s: actual = \"%s\" %d\n", + world_mpi_rank, FUNC, buffer, + actual_line_len); } - } else { - i++; - } - } + } else { + i++; + } + } - if ( trace_file_ptr != NULL ) { + if ( trace_file_ptr != NULL ) { - HDfclose(trace_file_ptr); - trace_file_ptr = NULL; + HDfclose(trace_file_ptr); + trace_file_ptr = NULL; #if 1 - HDremove(trace_file_name); + HDremove(trace_file_name); #endif } } @@ -7175,9 +7175,9 @@ trace_file_check(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -7203,18 +7203,18 @@ trace_file_check(int metadata_write_strategy) } /* trace_file_check() */ - + /***************************************************************************** * - * Function: smoke_check_6() + * Function: smoke_check_6() * - * Purpose: Sixth smoke check for the parallel cache. + * Purpose: Sixth smoke check for the parallel cache. * - * Return: Success: TRUE + * Return: Success: TRUE * - * Failure: FALSE + * Failure: FALSE * - * Programmer: JRM -- 1/13/06 + * Programmer: JRM -- 1/13/06 * *****************************************************************************/ static hbool_t @@ -7230,23 +7230,23 @@ smoke_check_6(int metadata_write_strategy) switch ( metadata_write_strategy ) { - case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: + case H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #6 -- process 0 only md write strategy"); + TESTING("smoke check #6 -- process 0 only md write strategy"); } - break; + break; - case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: + case H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #6 -- distributed md write strategy"); + TESTING("smoke check #6 -- distributed md write strategy"); } - break; + break; default: if ( world_mpi_rank == 0 ) { - TESTING("smoke check #6 -- unknown md write strategy"); + TESTING("smoke check #6 -- unknown md write strategy"); } - break; + break; } nerrors = 0; @@ -7255,12 +7255,12 @@ smoke_check_6(int metadata_write_strategy) if ( world_mpi_rank == world_server_mpi_rank ) { - if ( ! server_main() ) { + if ( ! server_main() ) { /* some error occured in the server -- report failure */ nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: server_main() failed.\n", + HDfprintf(stdout, "%d:%s: server_main() failed.\n", world_mpi_rank, FUNC); } } @@ -7276,7 +7276,7 @@ smoke_check_6(int metadata_write_strategy) fid = -1; cache_ptr = NULL; if ( verbose ) { - HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", + HDfprintf(stdout, "%d:%s: setup_cache_for_test() failed.\n", world_mpi_rank, FUNC); } } @@ -7326,11 +7326,11 @@ smoke_check_6(int metadata_write_strategy) HDassert(cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); } - /* flush the file */ + /* flush the file */ if ( H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0 ) { nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", + HDfprintf(stdout, "%d:%s: H5Fflush() failed.\n", world_mpi_rank, FUNC); } } @@ -7342,7 +7342,7 @@ smoke_check_6(int metadata_write_strategy) struct datum * entry_ptr; entry_ptr = &(data[i]); - lock_entry(file_ptr, i); + lock_entry(file_ptr, i); if(TRUE != entry_ptr->header.coll_access) { nerrors++; @@ -7363,7 +7363,7 @@ smoke_check_6(int metadata_write_strategy) struct datum * entry_ptr; entry_ptr = &(data[i]); - lock_entry(file_ptr, i); + lock_entry(file_ptr, i); if(FALSE != entry_ptr->header.coll_access) { nerrors++; @@ -7388,7 +7388,7 @@ smoke_check_6(int metadata_write_strategy) nerrors++; if ( verbose ) { - HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", + HDfprintf(stdout, "%d:%s: take_down_cache() failed.\n", world_mpi_rank, FUNC); } } @@ -7436,9 +7436,9 @@ smoke_check_6(int metadata_write_strategy) if ( world_mpi_rank == 0 ) { - if ( max_nerrors == 0 ) { + if ( max_nerrors == 0 ) { - PASSED(); + PASSED(); } else { @@ -7453,18 +7453,18 @@ smoke_check_6(int metadata_write_strategy) } /* smoke_check_6() */ - + /***************************************************************************** * - * Function: main() + * Function: main() * - * Purpose: Main function for the parallel cache test. + * Purpose: Main function for the parallel cache test. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: 1 + * Failure: 1 * - * Programmer: JRM -- 12/23/05 + * Programmer: JRM -- 12/23/05 * *****************************************************************************/ int @@ -7491,7 +7491,7 @@ main(int argc, char **argv) * calls. By then, MPI calls may not work. */ if (H5dont_atexit() < 0){ - printf("%d:Failed to turn off atexit processing. Continue.\n", + printf("%d:Failed to turn off atexit processing. Continue.\n", mpi_rank); }; H5open(); @@ -7502,32 +7502,32 @@ main(int argc, char **argv) #endif /* JRM */ if ( express_test ) { - virt_num_data_entries = EXPRESS_VIRT_NUM_DATA_ENTRIES; + virt_num_data_entries = EXPRESS_VIRT_NUM_DATA_ENTRIES; } else { - virt_num_data_entries = STD_VIRT_NUM_DATA_ENTRIES; + virt_num_data_entries = STD_VIRT_NUM_DATA_ENTRIES; } #ifdef H5_HAVE_MPE - if ( MAINPROCESS ) { printf(" Tests compiled for MPE.\n"); } + if ( MAINPROCESS ) { printf(" Tests compiled for MPE.\n"); } virt_num_data_entries = MPE_VIRT_NUM_DATA_ENTIES; #endif /* H5_HAVE_MPE */ if (MAINPROCESS){ - printf("===================================\n"); - printf("Parallel metadata cache tests\n"); - printf(" mpi_size = %d\n", mpi_size); - printf(" express_test = %d\n", express_test); - printf("===================================\n"); + printf("===================================\n"); + printf("Parallel metadata cache tests\n"); + printf(" mpi_size = %d\n", mpi_size); + printf(" express_test = %d\n", express_test); + printf("===================================\n"); } if ( mpi_size < 3 ) { if ( MAINPROCESS ) { - printf(" Need at least 3 processes. Exiting.\n"); + printf(" Need at least 3 processes. Exiting.\n"); } goto finish; } @@ -7546,8 +7546,8 @@ main(int argc, char **argv) /* setup file access property list with the world communicator */ if ( FAIL == (fapl = H5Pcreate(H5P_FILE_ACCESS)) ) { nerrors++; - if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Pcreate() failed 1.\n", + if ( verbose ) { + HDfprintf(stdout, "%d:%s: H5Pcreate() failed 1.\n", world_mpi_rank, FUNC); } } @@ -7579,8 +7579,8 @@ main(int argc, char **argv) /* close the fapl before we set it up again */ if ( H5Pclose(fapl) < 0 ) { nerrors++; - if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Pclose() failed.\n", + if ( verbose ) { + HDfprintf(stdout, "%d:%s: H5Pclose() failed.\n", world_mpi_rank, FUNC); } } @@ -7590,9 +7590,9 @@ main(int argc, char **argv) /* setup file access property list */ if ( FAIL == (fapl = H5Pcreate(H5P_FILE_ACCESS)) ) { - nerrors++; - if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Pcreate() failed 2.\n", + nerrors++; + if ( verbose ) { + HDfprintf(stdout, "%d:%s: H5Pcreate() failed 2.\n", world_mpi_rank, FUNC); } } @@ -7600,8 +7600,8 @@ main(int argc, char **argv) if ( H5Pset_fapl_mpio(fapl, file_mpi_comm, MPI_INFO_NULL) < 0 ) { nerrors++; - if ( verbose ) { - HDfprintf(stdout, "%d:%s: H5Pset_fapl_mpio() failed 2.\n", + if ( verbose ) { + HDfprintf(stdout, "%d:%s: H5Pset_fapl_mpio() failed 2.\n", world_mpi_rank, FUNC); } } @@ -7619,7 +7619,7 @@ main(int argc, char **argv) HDfprintf(stdout, "Errors in test initialization. Exiting.\n"); } - goto finish; + goto finish; } /* run the tests */ @@ -7672,16 +7672,16 @@ finish: * and exit. */ MPI_Barrier(MPI_COMM_WORLD); - if (MAINPROCESS){ /* only process 0 reports */ - printf("===================================\n"); - if (failures){ - printf("***metadata cache tests detected %d failures***\n", + if (MAINPROCESS){ /* only process 0 reports */ + printf("===================================\n"); + if (failures){ + printf("***metadata cache tests detected %d failures***\n", failures); - } - else{ - printf("metadata cache tests finished with no failures\n"); - } - printf("===================================\n"); + } + else{ + printf("metadata cache tests finished with no failures\n"); + } + printf("===================================\n"); } takedown_derived_types(); diff --git a/testpar/t_pflush1.c b/testpar/t_pflush1.c index abb9818..4677bfe 100644 --- a/testpar/t_pflush1.c +++ b/testpar/t_pflush1.c @@ -15,11 +15,11 @@ * Programmer: Leon Arber <larber@uiuc.edu> * Sept. 28, 2006. * - * Purpose: This is the first half of a two-part test that makes sure - * that a file can be read after a parallel application crashes as long - * as the file was flushed first. We simulate a crash by - * calling _exit(0) since this doesn't flush HDF5 caches but - * still exits with success. + * Purpose: This is the first half of a two-part test that makes sure + * that a file can be read after a parallel application crashes as long + * as the file was flushed first. We simulate a crash by + * calling _exit(0) since this doesn't flush HDF5 caches but + * still exits with success. */ #include "h5test.h" @@ -29,18 +29,18 @@ const char *FILENAME[] = { NULL }; -static double the_data[100][100]; +static double the_data[100][100]; /*------------------------------------------------------------------------- - * Function: create_file + * Function: create_file * - * Purpose: Creates file used in part 1 of the test + * Purpose: Creates file used in part 1 of the test * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: 1 + * Failure: 1 * - * Programmer: Leon Arber + * Programmer: Leon Arber * Sept. 26, 2006 * * Modifications: @@ -50,10 +50,10 @@ static double the_data[100][100]; static hid_t create_file(char* name, hid_t fapl) { - hid_t file, dcpl, space, dset, groups, grp, plist; - hsize_t ds_size[2] = {100, 100}; - hsize_t ch_size[2] = {5, 5}; - hsize_t i, j; + hid_t file, dcpl, space, dset, groups, grp, plist; + hsize_t ds_size[2] = {100, 100}; + hsize_t ch_size[2] = {5, 5}; + hsize_t i, j; @@ -64,7 +64,7 @@ create_file(char* name, hid_t fapl) if(H5Pset_chunk(dcpl, 2, ch_size) < 0) goto error; if((space = H5Screate_simple(2, ds_size, NULL)) < 0) goto error; if((dset = H5Dcreate2(file, "dset", H5T_NATIVE_FLOAT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; plist = H5Pcreate(H5P_DATASET_XFER); H5Pset_dxpl_mpio(plist, H5FD_MPIO_COLLECTIVE); @@ -72,22 +72,22 @@ create_file(char* name, hid_t fapl) /* Write some data */ for(i = 0; i < ds_size[0]; i++) { - /* - * The extra cast in the following statement is a bug workaround - * for the Win32 version 5.0 compiler. - * 1998-11-06 ptl - */ - for(j = 0; j < ds_size[1]; j++) - the_data[i][j] = (double)(hssize_t)i/(hssize_t)(j+1); + /* + * The extra cast in the following statement is a bug workaround + * for the Win32 version 5.0 compiler. + * 1998-11-06 ptl + */ + for(j = 0; j < ds_size[1]; j++) + the_data[i][j] = (double)(hssize_t)i/(hssize_t)(j+1); } if(H5Dwrite(dset, H5T_NATIVE_DOUBLE, space, space, plist, the_data) < 0) goto error; /* Create some groups */ if((groups = H5Gcreate2(file, "some_groups", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error; for(i = 0; i < 100; i++) { - sprintf(name, "grp%02u", (unsigned)i); - if((grp = H5Gcreate2(groups, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error; - if(H5Gclose(grp) < 0) goto error; + sprintf(name, "grp%02u", (unsigned)i); + if((grp = H5Gcreate2(groups, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto error; + if(H5Gclose(grp) < 0) goto error; } return file; @@ -97,20 +97,20 @@ error: } /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Part 1 of a two-part H5Fflush() test. + * Purpose: Part 1 of a two-part H5Fflush() test. * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: 1 + * Failure: 1 * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Friday, October 23, 1998 * * Modifications: - * Leon Arber - * Sept. 26, 2006, expand test to check for failure if H5Fflush is not called. + * Leon Arber + * Sept. 26, 2006, expand test to check for failure if H5Fflush is not called. * * *------------------------------------------------------------------------- @@ -119,8 +119,8 @@ int main(int argc, char* argv[]) { hid_t file1, file2, fapl; - MPI_File *mpifh_p = NULL; - char name[1024]; + MPI_File *mpifh_p = NULL; + char name[1024]; const char *envval = NULL; int mpi_size, mpi_rank; MPI_Comm comm = MPI_COMM_WORLD; @@ -134,26 +134,26 @@ main(int argc, char* argv[]) H5Pset_fapl_mpio(fapl, comm, info); if(mpi_rank == 0) - TESTING("H5Fflush (part1)"); + TESTING("H5Fflush (part1)"); envval = HDgetenv("HDF5_DRIVER"); if(envval == NULL) envval = "nomatch"; if(HDstrcmp(envval, "split")) { - /* Create the file */ - h5_fixname(FILENAME[0], fapl, name, sizeof name); - file1 = create_file(name, fapl); - /* Flush and exit without closing the library */ - if(H5Fflush(file1, H5F_SCOPE_GLOBAL) < 0) goto error; + /* Create the file */ + h5_fixname(FILENAME[0], fapl, name, sizeof name); + file1 = create_file(name, fapl); + /* Flush and exit without closing the library */ + if(H5Fflush(file1, H5F_SCOPE_GLOBAL) < 0) goto error; - /* Create the other file which will not be flushed */ - h5_fixname(FILENAME[1], fapl, name, sizeof name); - file2 = create_file(name, fapl); + /* Create the other file which will not be flushed */ + h5_fixname(FILENAME[1], fapl, name, sizeof name); + file2 = create_file(name, fapl); - if(mpi_rank == 0) - PASSED(); - fflush(stdout); - fflush(stderr); + if(mpi_rank == 0) + PASSED(); + fflush(stdout); + fflush(stderr); } /* end if */ else { SKIPPED(); @@ -170,21 +170,21 @@ main(int argc, char* argv[]) /* close file1 */ if(H5Fget_vfd_handle(file1, fapl, (void **)&mpifh_p) < 0) { - printf("H5Fget_vfd_handle for file1 failed\n"); - goto error; + printf("H5Fget_vfd_handle for file1 failed\n"); + goto error; } /* end if */ if(MPI_File_close(mpifh_p) != MPI_SUCCESS) { - printf("MPI_File_close for file1 failed\n"); - goto error; + printf("MPI_File_close for file1 failed\n"); + goto error; } /* end if */ /* close file2 */ if(H5Fget_vfd_handle(file2, fapl, (void **)&mpifh_p) < 0) { - printf("H5Fget_vfd_handle for file2 failed\n"); - goto error; + printf("H5Fget_vfd_handle for file2 failed\n"); + goto error; } /* end if */ if(MPI_File_close(mpifh_p) != MPI_SUCCESS) { - printf("MPI_File_close for file2 failed\n"); - goto error; + printf("MPI_File_close for file2 failed\n"); + goto error; } /* end if */ fflush(stdout); diff --git a/testpar/t_pread.c b/testpar/t_pread.c index 28b962b..53701b9 100644 --- a/testpar/t_pread.c +++ b/testpar/t_pread.c @@ -35,7 +35,7 @@ const char *FILENAMES[NFILENAME + 1]={"reloc_t_pread_data_file", #define COUNT 1000 hbool_t pass = true; -static const char *random_hdf5_text = +static const char *random_hdf5_text = "Now is the time for all first-time-users of HDF5 to read their \ manual or go thru the tutorials!\n\ While you\'re at it, now is also the time to read up on MPI-IO."; @@ -67,7 +67,7 @@ static char *test_argv0 = NULL; * In the overall scheme of running the test, we'll call * this function twice: first as a collection of all MPI * processes and then a second time with the processes split - * more or less in half. Each sub group will operate + * more or less in half. Each sub group will operate * collectively on their assigned file. This split into * subgroups validates that parallel groups can successfully * open and read data independantly from the other parallel @@ -81,7 +81,7 @@ static char *test_argv0 = NULL; * 10/1/17 * * Modifications: - * + * *------------------------------------------------------------------------- */ static int @@ -96,13 +96,13 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) int group_size; int group_rank; int local_failure = 0; - int global_failures = 0; + int global_failures = 0; hsize_t count = COUNT; hsize_t i; hsize_t offset; hsize_t dims[1] = {0}; hid_t file_id = -1; - hid_t memspace = -1; + hid_t memspace = -1; hid_t filespace = -1; hid_t fctmpl = -1; hid_t fapl_id = -1; @@ -140,7 +140,7 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) if ( pass ) { if ( comm == MPI_COMM_WORLD ) { /* Test 1 */ file_index = 0; - } + } else if ( group_id == 0 ) { /* Test 2 group 0 */ file_index = 1; } @@ -148,8 +148,8 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) file_index = 2; } - /* The 'group_filename' is just a temp variable and - * is used to call into the h5_fixname function. No + /* The 'group_filename' is just a temp variable and + * is used to call into the h5_fixname function. No * need to worry that we reassign it for each file! */ group_filename = FILENAMES[file_index]; @@ -206,9 +206,9 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) } } - /* create the data file */ + /* create the data file */ if ( pass ) { - if ( (file_id = H5Fcreate(data_filename, H5F_ACC_TRUNC, + if ( (file_id = H5Fcreate(data_filename, H5F_ACC_TRUNC, fctmpl, fapl_id)) < 0 ) { pass = FALSE; failure_mssg = "H5Fcreate() failed.\n"; @@ -248,7 +248,7 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) if ( pass ) { offset = (hsize_t)group_rank * (hsize_t)COUNT; - if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET, &offset, + if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET, &offset, NULL, &count, NULL)) < 0 ) { pass = FALSE; failure_mssg = "H5Sselect_hyperslab() failed.\n"; @@ -256,8 +256,8 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) } if ( pass ) { - if ( (dset_id = H5Dcreate2(file_id, "dataset0", H5T_NATIVE_FLOAT, - filespace, H5P_DEFAULT, H5P_DEFAULT, + if ( (dset_id = H5Dcreate2(file_id, "dataset0", H5T_NATIVE_FLOAT, + filespace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0 ) { pass = false; failure_mssg = "H5Dcreate2() failed.\n"; @@ -265,7 +265,7 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) } if ( pass ) { - if ( (H5Dwrite(dset_id, H5T_NATIVE_FLOAT, memspace, + if ( (H5Dwrite(dset_id, H5T_NATIVE_FLOAT, memspace, filespace, dxpl_id, data_slice)) < 0 ) { pass = false; failure_mssg = "H5Dwrite() failed.\n"; @@ -316,35 +316,35 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) } if (pass || (fctmpl != -1)) { - if (H5Pclose(fctmpl) < 0) { - pass = false; - failure_mssg = "H5Pclose(fctmpl) failed.\n"; + if (H5Pclose(fctmpl) < 0) { + pass = false; + failure_mssg = "H5Pclose(fctmpl) failed.\n"; } } /* Add a userblock to the head of the datafile. - * We will use this to for a functional test of the + * We will use this to for a functional test of the * file open optimization. This is superblock * relocation is done by the rank 0 process associated * with the communicator being used. For test 1, we * utilize MPI_COMM_WORLD, so group_rank 0 is the * same as mpi_rank 0. For test 2 which utilizes * two groups resulting from an MPI_Comm_split, we - * will have parallel groups and hence two - * group_rank(0) processes. Each parallel group + * will have parallel groups and hence two + * group_rank(0) processes. Each parallel group * will create a unique file with different text * headers and different data. */ if (group_rank == 0) { const char *text_to_write; - size_t bytes_to_write; + size_t bytes_to_write; - if (group_id == 0) - text_to_write = random_hdf5_text; + if (group_id == 0) + text_to_write = random_hdf5_text; else text_to_write = hitchhiker_quote; - bytes_to_write = HDstrlen(text_to_write); + bytes_to_write = HDstrlen(text_to_write); if (pass) { if ((header = HDopen(data_filename, O_WRONLY)) < 0) { @@ -376,7 +376,7 @@ generate_test_file( MPI_Comm comm, int mpi_rank, int group_id ) local_failure = ( pass ? 0 : 1 ); /* This is a global all reduce (NOT group specific) */ - if ( MPI_Allreduce(&local_failure, &global_failures, 1, + if ( MPI_Allreduce(&local_failure, &global_failures, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS ) { if ( pass ) { pass = FALSE; @@ -451,7 +451,7 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) const char *group_filename = NULL; char reloc_data_filename[FILENAME_BUF_SIZE]; int local_failure = 0; - int global_failures = 0; + int global_failures = 0; int group_size; int group_rank; hid_t fapl_id = -1; @@ -537,7 +537,7 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) /* open the file -- should have user block, exercising the optimization */ if ( pass ) { - if ( (file_id = H5Fopen(reloc_data_filename, + if ( (file_id = H5Fopen(reloc_data_filename, H5F_ACC_RDONLY, fapl_id)) < 0 ) { pass = FALSE; failure_mssg = "H5Fopen() failed\n"; @@ -571,7 +571,7 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) if ( pass ) { offset = (hsize_t)group_rank * count; - if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET, + if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET, &offset, NULL, &count, NULL)) < 0 ) { pass = FALSE; failure_mssg = "H5Sselect_hyperslab() failed\n"; @@ -580,14 +580,14 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) /* read this processes section of the data */ if ( pass ) { - if ( (H5Dread(dset_id, H5T_NATIVE_FLOAT, memspace, + if ( (H5Dread(dset_id, H5T_NATIVE_FLOAT, memspace, filespace, H5P_DEFAULT, data_slice)) < 0 ) { pass = FALSE; failure_mssg = "H5Dread() failed\n"; } } - - /* verify the data */ + + /* verify the data */ if ( pass ) { nextValue = (float)((hsize_t)mpi_rank * count); i = 0; @@ -648,7 +648,7 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) */ local_failure = ( pass ? 0 : 1 ); - if ( MPI_Allreduce( &local_failure, &global_failures, 1, + if ( MPI_Allreduce( &local_failure, &global_failures, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS ) { if ( pass ) { pass = FALSE; @@ -679,7 +679,7 @@ test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id) } - return( ! pass ); + return( ! pass ); } /* test_parallel_read() */ @@ -770,7 +770,7 @@ main( int argc, char **argv) /* ------ Create two (2) MPI groups ------ * - * We split MPI_COMM_WORLD into 2 more or less equal sized + * We split MPI_COMM_WORLD into 2 more or less equal sized * groups. The resulting communicators will be used to generate * two HDF files which in turn will be opened in parallel and the * contents verified in the second read test below. @@ -798,7 +798,7 @@ main( int argc, char **argv) } goto finish; } - + /* We generate the file used for test 2 */ nerrs += generate_test_file( group_comm, mpi_rank, which_group ); @@ -856,7 +856,6 @@ finish: HDfprintf(stdout, "===================================\n"); if ( nerrs > 0 ) { - HDfprintf(stdout, "***%s detected %d failures***\n", header, nerrs); } else { diff --git a/testpar/t_shapesame.c b/testpar/t_shapesame.c index 9e8f16b..e695bfc 100644 --- a/testpar/t_shapesame.c +++ b/testpar/t_shapesame.c @@ -12,7 +12,7 @@ /* This program will test independant and collective reads and writes between - selections of different rank that non-the-less are deemed as having the + selections of different rank that non-the-less are deemed as having the same shape by H5Sselect_shape_same(). */ @@ -29,24 +29,24 @@ /* On Lustre (and perhaps other parallel file systems?), we have severe * slow downs if two or more processes attempt to access the same file system * block. To minimize this problem, we set alignment in the shape same tests - * to the default Lustre block size -- which greatly reduces contention in + * to the default Lustre block size -- which greatly reduces contention in * the chunked dataset case. */ -#define SHAPE_SAME_TEST_ALIGNMENT ((hsize_t)(4 * 1024 * 1024)) +#define SHAPE_SAME_TEST_ALIGNMENT ((hsize_t)(4 * 1024 * 1024)) -#define PAR_SS_DR_MAX_RANK 5 /* must update code if this changes */ +#define PAR_SS_DR_MAX_RANK 5 /* must update code if this changes */ struct hs_dr_pio_test_vars_t { - int mpi_size; + int mpi_size; int mpi_rank; MPI_Comm mpi_comm; - MPI_Info mpi_info; + MPI_Info mpi_info; int test_num; int edge_size; - int checker_edge_size; + int checker_edge_size; int chunk_edge_size; int small_rank; int large_rank; @@ -62,13 +62,13 @@ struct hs_dr_pio_test_vars_t int small_ds_offset; int large_ds_offset; hid_t fid; /* HDF5 file ID */ - hid_t xfer_plist; + hid_t xfer_plist; hid_t full_mem_small_ds_sid; hid_t full_file_small_ds_sid; hid_t mem_small_ds_sid; hid_t file_small_ds_sid_0; hid_t file_small_ds_sid_1; - hid_t small_ds_slice_sid; + hid_t small_ds_slice_sid; hid_t full_mem_large_ds_sid; hid_t full_file_large_ds_sid; hid_t mem_large_ds_sid; @@ -76,7 +76,7 @@ struct hs_dr_pio_test_vars_t hid_t file_large_ds_sid_1; hid_t file_large_ds_process_slice_sid; hid_t mem_large_ds_process_slice_sid; - hid_t large_ds_slice_sid; + hid_t large_ds_slice_sid; hid_t small_dataset; /* Dataset ID */ hid_t large_dataset; /* Dataset ID */ size_t small_ds_size; @@ -94,25 +94,25 @@ struct hs_dr_pio_test_vars_t hsize_t * count_ptr; hsize_t * block_ptr; int skips; - int max_skips; - int64_t total_tests; - int64_t tests_run; - int64_t tests_skipped; + int max_skips; + int64_t total_tests; + int64_t tests_run; + int64_t tests_skipped; }; /*------------------------------------------------------------------------- - * Function: hs_dr_pio_test__setup() + * Function: hs_dr_pio_test__setup() * - * Purpose: Do setup for tests of I/O to/from hyperslab selections of - * different rank in the parallel case. + * Purpose: Do setup for tests of I/O to/from hyperslab selections of + * different rank in the parallel case. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/9/11 + * Programmer: JRM -- 8/9/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -131,21 +131,21 @@ hs_dr_pio_test__setup(const int test_num, const int express_test, struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CONTIG_HS_DR_PIO_TEST__SETUP__DEBUG +#if CONTIG_HS_DR_PIO_TEST__SETUP__DEBUG const char *fcnName = "hs_dr_pio_test__setup()"; #endif /* CONTIG_HS_DR_PIO_TEST__SETUP__DEBUG */ const char *filename; - hbool_t mis_match = FALSE; - int i; + hbool_t mis_match = FALSE; + int i; int mrc; - int mpi_rank; /* needed by the VRFY macro */ - uint32_t expected_value; + int mpi_rank; /* needed by the VRFY macro */ + uint32_t expected_value; uint32_t * ptr_0; uint32_t * ptr_1; - hid_t acc_tpl; /* File access templates */ + hid_t acc_tpl; /* File access templates */ hid_t small_ds_dcpl_id = H5P_DEFAULT; hid_t large_ds_dcpl_id = H5P_DEFAULT; - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ HDassert( edge_size >= 6 ); HDassert( edge_size >= chunk_edge_size ); @@ -217,7 +217,7 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->small_ds_buf_2 = (uint32_t *)HDmalloc(sizeof(uint32_t) * tv_ptr->small_ds_size); VRFY((tv_ptr->small_ds_buf_2 != NULL), "malloc of small_ds_buf_2 succeeded"); - tv_ptr->small_ds_slice_buf = + tv_ptr->small_ds_slice_buf = (uint32_t *)HDmalloc(sizeof(uint32_t) * tv_ptr->small_ds_slice_size); VRFY((tv_ptr->small_ds_slice_buf != NULL), "malloc of small_ds_slice_buf succeeded"); @@ -230,7 +230,7 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->large_ds_buf_2 = (uint32_t *)HDmalloc(sizeof(uint32_t) * tv_ptr->large_ds_size); VRFY((tv_ptr->large_ds_buf_2 != NULL), "malloc of large_ds_buf_2 succeeded"); - tv_ptr->large_ds_slice_buf = + tv_ptr->large_ds_slice_buf = (uint32_t *)HDmalloc(sizeof(uint32_t) * tv_ptr->large_ds_slice_size); VRFY((tv_ptr->large_ds_slice_buf != NULL), "malloc of large_ds_slice_buf succeeded"); @@ -254,21 +254,21 @@ hs_dr_pio_test__setup(const int test_num, filename = (const char *)GetTestParameters(); HDassert( filename != NULL ); -#if CONTIG_HS_DR_PIO_TEST__SETUP__DEBUG +#if CONTIG_HS_DR_PIO_TEST__SETUP__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "%d: test num = %d.\n", tv_ptr->mpi_rank, tv_ptr->test_num); HDfprintf(stdout, "%d: mpi_size = %d.\n", tv_ptr->mpi_rank, tv_ptr->mpi_size); - HDfprintf(stdout, + HDfprintf(stdout, "%d: small/large rank = %d/%d, use_collective_io = %d.\n", - tv_ptr->mpi_rank, tv_ptr->small_rank, tv_ptr->large_rank, + tv_ptr->mpi_rank, tv_ptr->small_rank, tv_ptr->large_rank, (int)use_collective_io); HDfprintf(stdout, "%d: edge_size = %d, chunk_edge_size = %d.\n", tv_ptr->mpi_rank, tv_ptr->edge_size, tv_ptr->chunk_edge_size); HDfprintf(stdout, "%d: checker_edge_size = %d.\n", tv_ptr->mpi_rank, tv_ptr->checker_edge_size); HDfprintf(stdout, "%d: small_ds_size = %d, large_ds_size = %d.\n", - tv_ptr->mpi_rank, (int)(tv_ptr->small_ds_size), + tv_ptr->mpi_rank, (int)(tv_ptr->small_ds_size), (int)(tv_ptr->large_ds_size)); HDfprintf(stdout, "%d: filename = %s.\n", tv_ptr->mpi_rank, filename); } @@ -303,78 +303,78 @@ hs_dr_pio_test__setup(const int test_num, /* setup dims: */ tv_ptr->dims[0] = (hsize_t)(tv_ptr->mpi_size + 1); - tv_ptr->dims[1] = tv_ptr->dims[2] = + tv_ptr->dims[1] = tv_ptr->dims[2] = tv_ptr->dims[3] = tv_ptr->dims[4] = (hsize_t)(tv_ptr->edge_size); /* Create small ds dataspaces */ - tv_ptr->full_mem_small_ds_sid = + tv_ptr->full_mem_small_ds_sid = H5Screate_simple(tv_ptr->small_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->full_mem_small_ds_sid != 0), + VRFY((tv_ptr->full_mem_small_ds_sid != 0), "H5Screate_simple() full_mem_small_ds_sid succeeded"); - tv_ptr->full_file_small_ds_sid = + tv_ptr->full_file_small_ds_sid = H5Screate_simple(tv_ptr->small_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->full_file_small_ds_sid != 0), + VRFY((tv_ptr->full_file_small_ds_sid != 0), "H5Screate_simple() full_file_small_ds_sid succeeded"); tv_ptr->mem_small_ds_sid = H5Screate_simple(tv_ptr->small_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->mem_small_ds_sid != 0), + VRFY((tv_ptr->mem_small_ds_sid != 0), "H5Screate_simple() mem_small_ds_sid succeeded"); tv_ptr->file_small_ds_sid_0 = H5Screate_simple(tv_ptr->small_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->file_small_ds_sid_0 != 0), + VRFY((tv_ptr->file_small_ds_sid_0 != 0), "H5Screate_simple() file_small_ds_sid_0 succeeded"); /* used by checker board tests only */ tv_ptr->file_small_ds_sid_1 = H5Screate_simple(tv_ptr->small_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->file_small_ds_sid_1 != 0), + VRFY((tv_ptr->file_small_ds_sid_1 != 0), "H5Screate_simple() file_small_ds_sid_1 succeeded"); - tv_ptr->small_ds_slice_sid = + tv_ptr->small_ds_slice_sid = H5Screate_simple(tv_ptr->small_rank - 1, &(tv_ptr->dims[1]), NULL); - VRFY((tv_ptr->small_ds_slice_sid != 0), + VRFY((tv_ptr->small_ds_slice_sid != 0), "H5Screate_simple() small_ds_slice_sid succeeded"); /* Create large ds dataspaces */ - tv_ptr->full_mem_large_ds_sid = + tv_ptr->full_mem_large_ds_sid = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->full_mem_large_ds_sid != 0), + VRFY((tv_ptr->full_mem_large_ds_sid != 0), "H5Screate_simple() full_mem_large_ds_sid succeeded"); - tv_ptr->full_file_large_ds_sid = + tv_ptr->full_file_large_ds_sid = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->full_file_large_ds_sid != FAIL), + VRFY((tv_ptr->full_file_large_ds_sid != FAIL), "H5Screate_simple() full_file_large_ds_sid succeeded"); tv_ptr->mem_large_ds_sid = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->mem_large_ds_sid != FAIL), + VRFY((tv_ptr->mem_large_ds_sid != FAIL), "H5Screate_simple() mem_large_ds_sid succeeded"); tv_ptr->file_large_ds_sid_0 = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->file_large_ds_sid_0 != FAIL), + VRFY((tv_ptr->file_large_ds_sid_0 != FAIL), "H5Screate_simple() file_large_ds_sid_0 succeeded"); /* used by checker board tests only */ tv_ptr->file_large_ds_sid_1 = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->file_large_ds_sid_1 != FAIL), + VRFY((tv_ptr->file_large_ds_sid_1 != FAIL), "H5Screate_simple() file_large_ds_sid_1 succeeded"); - tv_ptr->mem_large_ds_process_slice_sid = + tv_ptr->mem_large_ds_process_slice_sid = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->mem_large_ds_process_slice_sid != FAIL), + VRFY((tv_ptr->mem_large_ds_process_slice_sid != FAIL), "H5Screate_simple() mem_large_ds_process_slice_sid succeeded"); - tv_ptr->file_large_ds_process_slice_sid = + tv_ptr->file_large_ds_process_slice_sid = H5Screate_simple(tv_ptr->large_rank, tv_ptr->dims, NULL); - VRFY((tv_ptr->file_large_ds_process_slice_sid != FAIL), + VRFY((tv_ptr->file_large_ds_process_slice_sid != FAIL), "H5Screate_simple() file_large_ds_process_slice_sid succeeded"); - tv_ptr->large_ds_slice_sid = + tv_ptr->large_ds_slice_sid = H5Screate_simple(tv_ptr->large_rank - 1, &(tv_ptr->dims[1]), NULL); - VRFY((tv_ptr->large_ds_slice_sid != 0), + VRFY((tv_ptr->large_ds_slice_sid != 0), "H5Screate_simple() large_ds_slice_sid succeeded"); @@ -384,18 +384,18 @@ hs_dr_pio_test__setup(const int test_num, */ if ( tv_ptr->chunk_edge_size > 0 ) { - /* Under Lustre (and perhaps other parallel file systems?) we get - * locking delays when two or more processes attempt to access the + /* Under Lustre (and perhaps other parallel file systems?) we get + * locking delays when two or more processes attempt to access the * same file system block. * - * To minimize this problem, I have changed chunk_dims[0] + * To minimize this problem, I have changed chunk_dims[0] * from (mpi_size + 1) to just when any sort of express test is - * selected. Given the structure of the test, and assuming we - * set the alignment large enough, this avoids the contention - * issue by seeing to it that each chunk is only accessed by one + * selected. Given the structure of the test, and assuming we + * set the alignment large enough, this avoids the contention + * issue by seeing to it that each chunk is only accessed by one * process. * - * One can argue as to whether this is a good thing to do in our + * One can argue as to whether this is a good thing to do in our * tests, but for now it is necessary if we want the test to complete * in a reasonable amount of time. * @@ -409,8 +409,8 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->chunk_dims[0] = 1; } - tv_ptr->chunk_dims[1] = tv_ptr->chunk_dims[2] = - tv_ptr->chunk_dims[3] = + tv_ptr->chunk_dims[1] = tv_ptr->chunk_dims[2] = + tv_ptr->chunk_dims[3] = tv_ptr->chunk_dims[4] = (hsize_t)(tv_ptr->chunk_edge_size); small_ds_dcpl_id = H5Pcreate(H5P_DATASET_CREATE); @@ -509,7 +509,7 @@ hs_dr_pio_test__setup(const int test_num, /* write the initial value of the small data set to file */ - ret = H5Dwrite(tv_ptr->small_dataset, tv_ptr->dset_type, tv_ptr->mem_small_ds_sid, + ret = H5Dwrite(tv_ptr->small_dataset, tv_ptr->dset_type, tv_ptr->mem_small_ds_sid, tv_ptr->file_small_ds_sid_0, tv_ptr->xfer_plist, tv_ptr->small_ds_buf_0); VRFY((ret >= 0), "H5Dwrite() small_dataset initial write succeeded"); @@ -522,8 +522,8 @@ hs_dr_pio_test__setup(const int test_num, VRFY((mrc==MPI_SUCCESS), "Sync after small dataset writes"); } - /* read the small data set back to verify that it contains the - * expected data. Note that each process reads in the entire + /* read the small data set back to verify that it contains the + * expected data. Note that each process reads in the entire * data set and verifies it. */ ret = H5Dread(tv_ptr->small_dataset, @@ -572,7 +572,7 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->count, tv_ptr->block); VRFY((ret >= 0), "H5Sselect_hyperslab(file_large_ds_sid_0, set) suceeded"); - + /* In passing, setup the process slice data spaces as well */ ret = H5Sselect_hyperslab(tv_ptr->mem_large_ds_process_slice_sid, @@ -581,7 +581,7 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->stride, tv_ptr->count, tv_ptr->block); - VRFY((ret >= 0), + VRFY((ret >= 0), "H5Sselect_hyperslab(mem_large_ds_process_slice_sid, set) suceeded"); ret = H5Sselect_hyperslab(tv_ptr->file_large_ds_process_slice_sid, @@ -590,7 +590,7 @@ hs_dr_pio_test__setup(const int test_num, tv_ptr->stride, tv_ptr->count, tv_ptr->block); - VRFY((ret >= 0), + VRFY((ret >= 0), "H5Sselect_hyperslab(file_large_ds_process_slice_sid, set) suceeded"); if ( MAINPROCESS ) { /* add an additional slice to the selections */ @@ -616,8 +616,8 @@ hs_dr_pio_test__setup(const int test_num, /* write the initial value of the large data set to file */ - ret = H5Dwrite(tv_ptr->large_dataset, tv_ptr->dset_type, - tv_ptr->mem_large_ds_sid, tv_ptr->file_large_ds_sid_0, + ret = H5Dwrite(tv_ptr->large_dataset, tv_ptr->dset_type, + tv_ptr->mem_large_ds_sid, tv_ptr->file_large_ds_sid_0, tv_ptr->xfer_plist, tv_ptr->large_ds_buf_0); if ( ret < 0 ) H5Eprint2(H5E_DEFAULT, stderr); VRFY((ret >= 0), "H5Dwrite() large_dataset initial write succeeded"); @@ -631,8 +631,8 @@ hs_dr_pio_test__setup(const int test_num, } - /* read the large data set back to verify that it contains the - * expected data. Note that each process reads in the entire + /* read the large data set back to verify that it contains the + * expected data. Note that each process reads in the entire * data set. */ ret = H5Dread(tv_ptr->large_dataset, @@ -676,18 +676,18 @@ hs_dr_pio_test__setup(const int test_num, /*------------------------------------------------------------------------- - * Function: hs_dr_pio_test__takedown() + * Function: hs_dr_pio_test__takedown() * - * Purpose: Do takedown after tests of I/O to/from hyperslab selections - * of different rank in the parallel case. + * Purpose: Do takedown after tests of I/O to/from hyperslab selections + * of different rank in the parallel case. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/18/09 + * Programmer: JRM -- 9/18/09 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -697,11 +697,11 @@ hs_dr_pio_test__setup(const int test_num, static void hs_dr_pio_test__takedown( struct hs_dr_pio_test_vars_t * tv_ptr) { -#if HS_DR_PIO_TEST__TAKEDOWN__DEBUG +#if HS_DR_PIO_TEST__TAKEDOWN__DEBUG const char *fcnName = "hs_dr_pio_test__takedown()"; #endif /* HS_DR_PIO_TEST__TAKEDOWN__DEBUG */ - int mpi_rank; /* needed by the VRFY macro */ - herr_t ret; /* Generic return value */ + int mpi_rank; /* needed by the VRFY macro */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; @@ -785,27 +785,27 @@ hs_dr_pio_test__takedown( struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test__d2m_l2s() + * Function: contig_hs_dr_pio_test__d2m_l2s() * - * Purpose: Part one of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part one of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can read from disk correctly using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can read from disk correctly using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * In this function, we test this by reading small_rank - 1 - * slices from the on disk large cube, and verifying that the - * data read is correct. Verify that H5S_select_shape_same() - * returns true on the memory and file selections. + * In this function, we test this by reading small_rank - 1 + * slices from the on disk large cube, and verifying that the + * data read is correct. Verify that H5S_select_shape_same() + * returns true on the memory and file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/10/11 + * Programmer: JRM -- 9/10/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -815,24 +815,24 @@ hs_dr_pio_test__takedown( struct hs_dr_pio_test_vars_t * tv_ptr) static void contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG +#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG const char *fcnName = "contig_hs_dr_pio_test__run_test()"; #endif /* CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ - hbool_t mis_match = FALSE; - int i, j, k, l; - size_t n; - int mpi_rank; /* needed by the VRFY macro */ - uint32_t expected_value; + hbool_t mis_match = FALSE; + int i, j, k, l; + size_t n; + int mpi_rank; /* needed by the VRFY macro */ + uint32_t expected_value; uint32_t * ptr_1; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; - /* We have already done a H5Sselect_all() on the data space - * small_ds_slice_sid in the initialization phase, so no need to + /* We have already done a H5Sselect_all() on the data space + * small_ds_slice_sid in the initialization phase, so no need to * call H5Sselect_all() again. */ @@ -857,16 +857,16 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /* zero out the buffer we will be reading into */ HDmemset(tv_ptr->small_ds_slice_buf, 0, sizeof(uint32_t) * tv_ptr->small_ds_slice_size); -#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG - HDfprintf(stdout, +#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG + HDfprintf(stdout, "%s reading slices from big cube on disk into small cube slice.\n", fcnName); #endif /* CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ /* in serial versions of this test, we loop through all the dimensions - * of the large data set. However, in the parallel version, each + * of the large data set. However, in the parallel version, each * process only works with that slice of the large cube indicated - * by its rank -- hence we set the most slowly changing index to + * by its rank -- hence we set the most slowly changing index to * mpi_rank, and don't itterate over it. */ @@ -879,9 +879,9 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -905,7 +905,7 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -919,14 +919,14 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) do { if ( (tv_ptr->skips)++ < tv_ptr->max_skips ) { /* skip the test */ - (tv_ptr->tests_skipped)++; + (tv_ptr->tests_skipped)++; } else { /* run the test */ tv_ptr->skips = 0; /* reset the skips counter */ - /* we know that small_rank - 1 >= 1 and that - * large_rank > small_rank by the assertions at the head + /* we know that small_rank - 1 >= 1 and that + * large_rank > small_rank by the assertions at the head * of this function. Thus no need for another inner loop. */ tv_ptr->start[0] = (hsize_t)i; @@ -941,7 +941,7 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->stride_ptr, tv_ptr->count_ptr, tv_ptr->block_ptr); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Sselect_hyperslab(file_large_cube_sid) succeeded"); @@ -954,11 +954,11 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /* Read selection from disk */ -#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", - fcnName, (int)(tv_ptr->mpi_rank), - (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), - (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), +#if CONTIG_HS_DR_PIO_TEST__D2M_L2S__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", + fcnName, (int)(tv_ptr->mpi_rank), + (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), + (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), (int)(tv_ptr->start[4])); HDfprintf(stdout, "%s slice/file extent dims = %d/%d.\n", fcnName, @@ -979,7 +979,7 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) mis_match = FALSE; ptr_1 = tv_ptr->small_ds_slice_buf; expected_value = (uint32_t)( - (i * tv_ptr->edge_size * tv_ptr->edge_size * + (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -998,10 +998,10 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) expected_value++; } - VRFY((mis_match == FALSE), + VRFY((mis_match == FALSE), "small slice read from large ds data good."); - (tv_ptr->tests_run)++; + (tv_ptr->tests_run)++; } l++; @@ -1026,27 +1026,27 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test__d2m_s2l() + * Function: contig_hs_dr_pio_test__d2m_s2l() * - * Purpose: Part two of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part two of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can read from disk correctly using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can read from disk correctly using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * In this function, we test this by reading slices of the - * on disk small data set into slices through the in memory - * large data set, and verify that the correct data (and - * only the correct data) is read. + * In this function, we test this by reading slices of the + * on disk small data set into slices through the in memory + * large data set, and verify that the correct data (and + * only the correct data) is read. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/10/11 + * Programmer: JRM -- 8/10/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -1056,25 +1056,25 @@ contig_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) static void contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG +#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG const char *fcnName = "contig_hs_dr_pio_test__d2m_s2l()"; #endif /* CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG */ - hbool_t mis_match = FALSE; - int i, j, k, l; - size_t n; - int mpi_rank; /* needed by the VRFY macro */ + hbool_t mis_match = FALSE; + int i, j, k, l; + size_t n; + int mpi_rank; /* needed by the VRFY macro */ size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; - /* Read slices of the on disk small data set into slices - * through the in memory large data set, and verify that the correct + /* Read slices of the on disk small data set into slices + * through the in memory large data set, and verify that the correct * data (and only the correct data) is read. */ @@ -1100,8 +1100,8 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) VRFY((ret >= 0), "H5Sselect_hyperslab(file_small_ds_sid_0, set) suceeded"); -#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG - HDfprintf(stdout, +#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG + HDfprintf(stdout, "%s reading slices of on disk small data set into slices of big data set.\n", fcnName); #endif /* CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG */ @@ -1129,11 +1129,11 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /* in serial versions of this test, we loop through all the dimensions - * of the large data set that don't appear in the small data set. + * of the large data set that don't appear in the small data set. * - * However, in the parallel version, each process only works with that - * slice of the large (and small) data set indicated by its rank -- hence - * we set the most slowly changing index to mpi_rank, and don't itterate + * However, in the parallel version, each process only works with that + * slice of the large (and small) data set indicated by its rank -- hence + * we set the most slowly changing index to mpi_rank, and don't itterate * over it. */ @@ -1147,9 +1147,9 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -1173,7 +1173,7 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -1209,7 +1209,7 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->stride_ptr, tv_ptr->count_ptr, tv_ptr->block_ptr); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Sselect_hyperslab(mem_large_ds_sid) succeeded"); @@ -1222,11 +1222,11 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /* Read selection from disk */ -#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", - fcnName, (int)(tv_ptr->mpi_rank), - (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), - (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), +#if CONTIG_HS_DR_PIO_TEST__D2M_S2L__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", + fcnName, (int)(tv_ptr->mpi_rank), + (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), + (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), (int)(tv_ptr->start[4])); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -1248,7 +1248,7 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) expected_value = (uint32_t) ((size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size); start_index = (size_t)( - (i * tv_ptr->edge_size * tv_ptr->edge_size * + (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -1281,7 +1281,7 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1++; } - VRFY((mis_match == FALSE), + VRFY((mis_match == FALSE), "small slice read from large ds data good."); (tv_ptr->tests_run)++; @@ -1309,29 +1309,29 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test__m2d_l2s() + * Function: contig_hs_dr_pio_test__m2d_l2s() * - * Purpose: Part three of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part three of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can write from memory to file using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can write from memory to file using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * Do this by writing small_rank - 1 dimensional slices from - * the in memory large data set to the on disk small cube - * dataset. After each write, read the slice of the small - * dataset back from disk, and verify that it contains - * the expected data. Verify that H5S_select_shape_same() - * returns true on the memory and file selections. + * Do this by writing small_rank - 1 dimensional slices from + * the in memory large data set to the on disk small cube + * dataset. After each write, read the slice of the small + * dataset back from disk, and verify that it contains + * the expected data. Verify that H5S_select_shape_same() + * returns true on the memory and file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/10/11 + * Programmer: JRM -- 8/10/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -1341,19 +1341,19 @@ contig_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) static void contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG +#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG const char *fcnName = "contig_hs_dr_pio_test__m2d_l2s()"; #endif /* CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG */ - hbool_t mis_match = FALSE; - int i, j, k, l; - size_t n; - int mpi_rank; /* needed by the VRFY macro */ + hbool_t mis_match = FALSE; + int i, j, k, l; + size_t n; + int mpi_rank; /* needed by the VRFY macro */ size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; @@ -1363,10 +1363,10 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) * from memory to file using selections of different rank that * H5S_select_shape_same() views as being of the same shape. * - * Start by writing small_rank - 1 dimensional slices from the in memory large - * data set to the on disk small cube dataset. After each write, read the - * slice of the small dataset back from disk, and verify that it contains - * the expected data. Verify that H5S_select_shape_same() returns true on + * Start by writing small_rank - 1 dimensional slices from the in memory large + * data set to the on disk small cube dataset. After each write, read the + * slice of the small dataset back from disk, and verify that it contains + * the expected data. Verify that H5S_select_shape_same() returns true on * the memory and file selections. */ @@ -1422,18 +1422,18 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) HDmemset(tv_ptr->small_ds_buf_1, 0, sizeof(uint32_t) * tv_ptr->small_ds_size); -#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG - HDfprintf(stdout, +#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG + HDfprintf(stdout, "%s writing slices from big ds to slices of small ds on disk.\n", fcnName); #endif /* CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG */ /* in serial versions of this test, we loop through all the dimensions - * of the large data set that don't appear in the small data set. + * of the large data set that don't appear in the small data set. * - * However, in the parallel version, each process only works with that - * slice of the large (and small) data set indicated by its rank -- hence - * we set the most slowly changing index to mpi_rank, and don't itterate + * However, in the parallel version, each process only works with that + * slice of the large (and small) data set indicated by its rank -- hence + * we set the most slowly changing index to mpi_rank, and don't itterate * over it. */ @@ -1447,9 +1447,9 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -1474,7 +1474,7 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -1523,7 +1523,7 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->stride_ptr, tv_ptr->count_ptr, tv_ptr->block_ptr); - VRFY((ret >= 0), + VRFY((ret >= 0), "H5Sselect_hyperslab() mem_large_ds_sid succeeded."); @@ -1536,13 +1536,13 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) VRFY((check == TRUE), "H5S_select_shape_same_test passed."); - /* write the slice from the in memory large data set to the + /* write the slice from the in memory large data set to the * slice of the on disk small dataset. */ -#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", +#if CONTIG_HS_DR_PIO_TEST__M2D_L2S__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", fcnName, (int)(tv_ptr->mpi_rank), - (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), - (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), + (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), + (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), (int)(tv_ptr->start[4])); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -1574,7 +1574,7 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1 = tv_ptr->small_ds_buf_1; expected_value = (uint32_t)( - (i * tv_ptr->edge_size * tv_ptr->edge_size * + (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -1609,7 +1609,7 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1++; } - VRFY((mis_match == FALSE), + VRFY((mis_match == FALSE), "small slice write from large ds data good."); (tv_ptr->tests_run)++; @@ -1637,31 +1637,31 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test__m2d_s2l() + * Function: contig_hs_dr_pio_test__m2d_s2l() * - * Purpose: Part four of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part four of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can write from memory to file using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can write from memory to file using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * Do this by writing the contents of the process's slice of - * the in memory small data set to slices of the on disk - * large data set. After each write, read the process's - * slice of the large data set back into memory, and verify - * that it contains the expected data. + * Do this by writing the contents of the process's slice of + * the in memory small data set to slices of the on disk + * large data set. After each write, read the process's + * slice of the large data set back into memory, and verify + * that it contains the expected data. * - * Verify that H5S_select_shape_same() returns true on the - * memory and file selections. + * Verify that H5S_select_shape_same() returns true on the + * memory and file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/10/11 + * Programmer: JRM -- 8/10/11 * * Modifications: * - * None + * None * *------------------------------------------------------------------------- */ @@ -1671,32 +1671,32 @@ contig_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) static void contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG +#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG const char *fcnName = "contig_hs_dr_pio_test__m2d_s2l()"; #endif /* CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG */ - hbool_t mis_match = FALSE; - int i, j, k, l; - size_t n; - int mpi_rank; /* needed by the VRFY macro */ + hbool_t mis_match = FALSE; + int i, j, k, l; + size_t n; + int mpi_rank; /* needed by the VRFY macro */ size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; - /* Now write the contents of the process's slice of the in memory - * small data set to slices of the on disk large data set. After + /* Now write the contents of the process's slice of the in memory + * small data set to slices of the on disk large data set. After * each write, read the process's slice of the large data set back - * into memory, and verify that it contains the expected data. - * Verify that H5S_select_shape_same() returns true on the memory + * into memory, and verify that it contains the expected data. + * Verify that H5S_select_shape_same() returns true on the memory * and file selections. */ - /* select the slice of the in memory small data set associated with + /* select the slice of the in memory small data set associated with * the process's mpi rank. */ tv_ptr->start[0] = (hsize_t)(tv_ptr->mpi_rank); @@ -1743,8 +1743,8 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /* zero out the in memory large ds */ HDmemset(tv_ptr->large_ds_buf_1, 0, sizeof(uint32_t) * tv_ptr->large_ds_size); -#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG - HDfprintf(stdout, +#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG + HDfprintf(stdout, "%s writing process slices of small ds to slices of large ds on disk.\n", fcnName); #endif /* CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG */ @@ -1758,9 +1758,9 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -1784,7 +1784,7 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -1800,18 +1800,18 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) (tv_ptr->tests_skipped)++; -#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG +#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG tv_ptr->start[0] = (hsize_t)i; tv_ptr->start[1] = (hsize_t)j; tv_ptr->start[2] = (hsize_t)k; tv_ptr->start[3] = (hsize_t)l; tv_ptr->start[4] = 0; - HDfprintf(stdout, - "%s:%d: skipping test with start = %d %d %d %d %d.\n", + HDfprintf(stdout, + "%s:%d: skipping test with start = %d %d %d %d %d.\n", fcnName, (int)(tv_ptr->mpi_rank), - (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), - (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), + (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), + (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), (int)(tv_ptr->start[4])); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -1855,7 +1855,7 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->stride_ptr, tv_ptr->count_ptr, tv_ptr->block_ptr); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Sselect_hyperslab() target large ds slice succeeded"); @@ -1869,14 +1869,14 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) VRFY((check == TRUE), "H5S_select_shape_same_test passed"); - /* write the small data set slice from memory to the - * target slice of the disk data set + /* write the small data set slice from memory to the + * target slice of the disk data set */ -#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", +#if CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", fcnName, (int)(tv_ptr->mpi_rank), - (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), - (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), + (int)(tv_ptr->start[0]), (int)(tv_ptr->start[1]), + (int)(tv_ptr->start[2]), (int)(tv_ptr->start[3]), (int)(tv_ptr->start[4])); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -1889,11 +1889,11 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->file_large_ds_sid_0, tv_ptr->xfer_plist, tv_ptr->small_ds_buf_0); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Dwrite of small ds slice to large ds succeeded"); - /* read this processes slice on the on disk large + /* read this processes slice on the on disk large * data set into memory. */ @@ -1903,7 +1903,7 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->file_large_ds_process_slice_sid, tv_ptr->xfer_plist, tv_ptr->large_ds_buf_1); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Dread() of process slice of large ds succeeded"); @@ -1912,12 +1912,12 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) */ ptr_1 = tv_ptr->large_ds_buf_1; expected_value = (uint32_t) - ((size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size); + ((size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size); start_index = (size_t) - ((i * tv_ptr->edge_size * tv_ptr->edge_size * + ((i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + - (j * tv_ptr->edge_size * tv_ptr->edge_size * + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + (l * tv_ptr->edge_size)); @@ -1949,7 +1949,7 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1++; } - VRFY((mis_match == FALSE), + VRFY((mis_match == FALSE), "small ds slice write to large ds slice data good."); (tv_ptr->tests_run)++; @@ -1977,29 +1977,29 @@ contig_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test__run_test() + * Function: contig_hs_dr_pio_test__run_test() * - * Purpose: Test I/O to/from hyperslab selections of different rank in - * the parallel. + * Purpose: Test I/O to/from hyperslab selections of different rank in + * the parallel. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/18/09 + * Programmer: JRM -- 9/18/09 * * Modifications: * - * JRM -- 9/16/10 - * Added express_test parameter. Use it to control whether - * we set up the chunks so that no chunk is shared between - * processes, and also whether we set an alignment when we - * create the test file. + * JRM -- 9/16/10 + * Added express_test parameter. Use it to control whether + * we set up the chunks so that no chunk is shared between + * processes, and also whether we set an alignment when we + * create the test file. * - * JRM -- 8/11/11 - * Refactored function heavily & broke it into six functions. - * Added the skips_ptr, max_skips, total_tests_ptr, - * tests_run_ptr, and tests_skiped_ptr parameters to support - * skipping portions of the test according to the express - * test value. + * JRM -- 8/11/11 + * Refactored function heavily & broke it into six functions. + * Added the skips_ptr, max_skips, total_tests_ptr, + * tests_run_ptr, and tests_skiped_ptr parameters to support + * skipping portions of the test according to the express + * test value. * *------------------------------------------------------------------------- */ @@ -2021,13 +2021,13 @@ contig_hs_dr_pio_test__run_test(const int test_num, int64_t * tests_run_ptr, int64_t * tests_skipped_ptr) { -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG const char *fcnName = "contig_hs_dr_pio_test__run_test()"; #endif /* CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG */ - int mpi_rank; - struct hs_dr_pio_test_vars_t test_vars = + int mpi_rank; + struct hs_dr_pio_test_vars_t test_vars = { - /* int mpi_size = */ -1, + /* int mpi_size = */ -1, /* int mpi_rank = */ -1, /* MPI_Comm mpi_comm = */ MPI_COMM_NULL, /* MPI_Inf mpi_info = */ MPI_INFO_NULL, @@ -2043,7 +2043,7 @@ contig_hs_dr_pio_test__run_test(const int test_num, /* uint32_t * small_ds_buf_2 = */ NULL, /* uint32_t * small_ds_slice_buf = */ NULL, /* uint32_t * large_ds_buf_0 = */ NULL, - /* uint32_t * large_ds_buf_1 = */ NULL, + /* uint32_t * large_ds_buf_1 = */ NULL, /* uint32_t * large_ds_buf_2 = */ NULL, /* uint32_t * large_ds_slice_buf = */ NULL, /* int small_ds_offset = */ -1, @@ -2080,8 +2080,8 @@ contig_hs_dr_pio_test__run_test(const int test_num, /* hsize_t * stride_ptr = */ NULL, /* hsize_t * count_ptr = */ NULL, /* hsize_t * block_ptr = */ NULL, - /* int skips = */ 0, - /* int max_skips = */ 0, + /* int skips = */ 0, + /* int max_skips = */ 0, /* int64_t total_tests = */ 0, /* int64_t tests_run = */ 0, /* int64_t tests_skipped = */ 0 @@ -2099,7 +2099,7 @@ contig_hs_dr_pio_test__run_test(const int test_num, tv_ptr->skips = *skips_ptr; tv_ptr->max_skips = max_skips; -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: small rank = %d, large rank = %d.\n", test_num, small_rank, large_rank); @@ -2111,12 +2111,12 @@ contig_hs_dr_pio_test__run_test(const int test_num, * of different rank that H5S_select_shape_same() views as being of the * same shape. * - * Start by reading small_rank - 1 dimensional slice from the on disk - * large cube, and verifying that the data read is correct. Verify that + * Start by reading small_rank - 1 dimensional slice from the on disk + * large cube, and verifying that the data read is correct. Verify that * H5S_select_shape_same() returns true on the memory and file selections. */ -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: running contig_hs_dr_pio_test__d2m_l2s.\n", test_num); } @@ -2124,12 +2124,12 @@ contig_hs_dr_pio_test__run_test(const int test_num, contig_hs_dr_pio_test__d2m_l2s(tv_ptr); - /* Second, read slices of the on disk small data set into slices - * through the in memory large data set, and verify that the correct + /* Second, read slices of the on disk small data set into slices + * through the in memory large data set, and verify that the correct * data (and only the correct data) is read. */ -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: running contig_hs_dr_pio_test__d2m_s2l.\n", test_num); } @@ -2142,13 +2142,13 @@ contig_hs_dr_pio_test__run_test(const int test_num, * H5S_select_shape_same() views as being of the same shape. * * Start by writing small_rank - 1 D slices from the in memory large data - * set to the on disk small cube dataset. After each write, read the - * slice of the small dataset back from disk, and verify that it contains - * the expected data. Verify that H5S_select_shape_same() returns true on + * set to the on disk small cube dataset. After each write, read the + * slice of the small dataset back from disk, and verify that it contains + * the expected data. Verify that H5S_select_shape_same() returns true on * the memory and file selections. */ -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: running contig_hs_dr_pio_test__m2d_l2s.\n", test_num); } @@ -2156,25 +2156,25 @@ contig_hs_dr_pio_test__run_test(const int test_num, contig_hs_dr_pio_test__m2d_l2s(tv_ptr); - /* Now write the contents of the process's slice of the in memory - * small data set to slices of the on disk large data set. After + /* Now write the contents of the process's slice of the in memory + * small data set to slices of the on disk large data set. After * each write, read the process's slice of the large data set back - * into memory, and verify that it contains the expected data. - * Verify that H5S_select_shape_same() returns true on the memory + * into memory, and verify that it contains the expected data. + * Verify that H5S_select_shape_same() returns true on the memory * and file selections. */ -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: running contig_hs_dr_pio_test__m2d_s2l.\n", test_num); } #endif /* CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG */ contig_hs_dr_pio_test__m2d_s2l(tv_ptr); -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { - HDfprintf(stdout, - "test %d: Subtests complete -- tests run/skipped/total = %lld/%lld/%lld.\n", + HDfprintf(stdout, + "test %d: Subtests complete -- tests run/skipped/total = %lld/%lld/%lld.\n", test_num, (long long)(tv_ptr->tests_run), (long long)(tv_ptr->tests_skipped), (long long)(tv_ptr->total_tests)); } @@ -2182,7 +2182,7 @@ contig_hs_dr_pio_test__run_test(const int test_num, hs_dr_pio_test__takedown(tv_ptr); -#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG +#if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { HDfprintf(stdout, "test %d: Takedown complete.\n", test_num); } @@ -2199,28 +2199,28 @@ contig_hs_dr_pio_test__run_test(const int test_num, /*------------------------------------------------------------------------- - * Function: contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) + * Function: contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) * - * Purpose: Test I/O to/from hyperslab selections of different rank in - * the parallel case. + * Purpose: Test I/O to/from hyperslab selections of different rank in + * the parallel case. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/18/09 + * Programmer: JRM -- 9/18/09 * * Modifications: * - * Modified function to take a sample of the run times - * of the different tests, and skip some of them if - * run times are too long. + * Modified function to take a sample of the run times + * of the different tests, and skip some of them if + * run times are too long. * - * We need to do this because Lustre runns very slowly - * if two or more processes are banging on the same - * block of memory. - * JRM -- 9/10/10 + * We need to do this because Lustre runns very slowly + * if two or more processes are banging on the same + * block of memory. + * JRM -- 9/10/10 * Break this one big test into 4 smaller tests according * to {independent,collective}x{contigous,chunked} datasets. - * AKC -- 2010/01/14 + * AKC -- 2010/01/14 * *------------------------------------------------------------------------- */ @@ -2234,23 +2234,23 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) int local_express_test; int mpi_rank = -1; int mpi_size; - int test_num = 0; - int edge_size; - int chunk_edge_size = 0; - int small_rank; - int large_rank; - int mpi_result; - int skips = 0; - int max_skips = 0; - /* The following table list the number of sub-tests skipped between - * each test that is actually executed as a function of the express + int test_num = 0; + int edge_size; + int chunk_edge_size = 0; + int small_rank; + int large_rank; + int mpi_result; + int skips = 0; + int max_skips = 0; + /* The following table list the number of sub-tests skipped between + * each test that is actually executed as a function of the express * test level. Note that any value in excess of 4880 will cause all * sub tests to be skipped. */ int max_skips_tbl[4] = {0, 4, 64, 1024}; - hid_t dset_type = H5T_NATIVE_UINT; - int64_t total_tests = 0; - int64_t tests_run = 0; + hid_t dset_type = H5T_NATIVE_UINT; + int64_t total_tests = 0; + int64_t tests_run = 0; int64_t tests_skipped = 0; HDcompile_assert(sizeof(uint32_t) == sizeof(unsigned)); @@ -2293,7 +2293,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) chunk_edge_size, small_rank, large_rank, - FALSE, + FALSE, dset_type, express_test, &skips, @@ -2314,7 +2314,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) chunk_edge_size, small_rank, large_rank, - TRUE, + TRUE, dset_type, express_test, &skips, @@ -2335,7 +2335,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) chunk_edge_size, small_rank, large_rank, - FALSE, + FALSE, dset_type, express_test, &skips, @@ -2356,7 +2356,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) chunk_edge_size, small_rank, large_rank, - TRUE, + TRUE, dset_type, express_test, &skips, @@ -2375,7 +2375,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) } /* end of switch(sstest_type) */ #if CONTIG_HS_DR_PIO_TEST__DEBUG if ( ( MAINPROCESS ) && ( tests_skipped > 0 ) ) { - HDfprintf(stdout, " run/skipped/total = %lld/%lld/%lld.\n", + HDfprintf(stdout, " run/skipped/total = %lld/%lld/%lld.\n", tests_run, tests_skipped, total_tests); } #endif /* CONTIG_HS_DR_PIO_TEST__DEBUG */ @@ -2383,7 +2383,7 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) } if ( ( MAINPROCESS ) && ( tests_skipped > 0 ) ) { - HDfprintf(stdout, " %lld of %lld subtests skipped to expedite testing.\n", + HDfprintf(stdout, " %lld of %lld subtests skipped to expedite testing.\n", tests_skipped, total_tests); } @@ -2394,24 +2394,24 @@ contig_hs_dr_pio_test(ShapeSameTestMethods sstest_type) /**************************************************************** ** -** ckrbrd_hs_dr_pio_test__slct_ckrbrd(): -** Given a data space of tgt_rank, and dimensions: +** ckrbrd_hs_dr_pio_test__slct_ckrbrd(): +** Given a data space of tgt_rank, and dimensions: ** -** (mpi_size + 1), edge_size, ... , edge_size +** (mpi_size + 1), edge_size, ... , edge_size ** -** edge_size, and a checker_edge_size, select a checker -** board selection of a sel_rank (sel_rank < tgt_rank) -** dimensional slice through the data space parallel to the +** edge_size, and a checker_edge_size, select a checker +** board selection of a sel_rank (sel_rank < tgt_rank) +** dimensional slice through the data space parallel to the ** sel_rank fastest changing indicies, with origin (in the -** higher indicies) as indicated by the start array. +** higher indicies) as indicated by the start array. ** -** Note that this function, like all its relatives, is -** hard coded to presume a maximum data space rank of 5. -** While this maximum is declared as a constant, increasing -** it will require extensive coding in addition to changing +** Note that this function, like all its relatives, is +** hard coded to presume a maximum data space rank of 5. +** While this maximum is declared as a constant, increasing +** it will require extensive coding in addition to changing ** the value of the constant. ** -** JRM -- 10/8/09 +** JRM -- 10/8/09 ** ****************************************************************/ @@ -2426,22 +2426,22 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, const int sel_rank, hsize_t sel_start[]) { -#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG - const char * fcnName = "ckrbrd_hs_dr_pio_test__slct_ckrbrd():"; -#endif - hbool_t first_selection = TRUE; +#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG + const char * fcnName = "ckrbrd_hs_dr_pio_test__slct_ckrbrd():"; +#endif + hbool_t first_selection = TRUE; int i, j, k, l, m; - int n_cube_offset; - int sel_offset; - const int test_max_rank = PAR_SS_DR_MAX_RANK; /* must update code if */ + int n_cube_offset; + int sel_offset; + const int test_max_rank = PAR_SS_DR_MAX_RANK; /* must update code if */ /* this changes */ - hsize_t base_count; + hsize_t base_count; hsize_t offset_count; - hsize_t start[PAR_SS_DR_MAX_RANK]; - hsize_t stride[PAR_SS_DR_MAX_RANK]; - hsize_t count[PAR_SS_DR_MAX_RANK]; - hsize_t block[PAR_SS_DR_MAX_RANK]; - herr_t ret; /* Generic return value */ + hsize_t start[PAR_SS_DR_MAX_RANK]; + hsize_t stride[PAR_SS_DR_MAX_RANK]; + hsize_t count[PAR_SS_DR_MAX_RANK]; + hsize_t block[PAR_SS_DR_MAX_RANK]; + herr_t ret; /* Generic return value */ HDassert( edge_size >= 6 ); HDassert( 0 < checker_edge_size ); @@ -2458,14 +2458,14 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, HDassert( n_cube_offset >= 0 ); HDassert( n_cube_offset <= sel_offset ); -#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG HDfprintf(stdout, "%s:%d: edge_size/checker_edge_size = %d/%d\n", fcnName, mpi_rank, edge_size, checker_edge_size); - HDfprintf(stdout, "%s:%d: sel_rank/sel_offset = %d/%d.\n", + HDfprintf(stdout, "%s:%d: sel_rank/sel_offset = %d/%d.\n", fcnName, mpi_rank, sel_rank, sel_offset); - HDfprintf(stdout, "%s:%d: tgt_rank/n_cube_offset = %d/%d.\n", + HDfprintf(stdout, "%s:%d: tgt_rank/n_cube_offset = %d/%d.\n", fcnName, mpi_rank, tgt_rank, n_cube_offset); -#endif /* CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG */ +#endif /* CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG */ /* First, compute the base count (which assumes start == 0 * for the associated offset) and offset_count (which @@ -2495,7 +2495,7 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, } /* Now set up the stride and block arrays, and portions of the start - * and count arrays that will not be altered during the selection of + * and count arrays that will not be altered during the selection of * the checker board. */ i = 0; @@ -2527,7 +2527,7 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, i++; } - + i = 0; do { if ( 0 >= sel_offset ) { @@ -2546,7 +2546,7 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, } j = 0; - do { + do { if ( 1 >= sel_offset ) { if ( j == 0 ) { @@ -2615,62 +2615,62 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, if ( ((i + j + k + l + m) % 2) == 0 ) { -#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG - HDfprintf(stdout, "%s%d: *** first_selection = %d ***\n", +#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG + HDfprintf(stdout, "%s%d: *** first_selection = %d ***\n", fcnName, mpi_rank, (int)first_selection); HDfprintf(stdout, "%s:%d: i/j/k/l/m = %d/%d/%d/%d/%d\n", fcnName, mpi_rank, i, j, k, l, m); - HDfprintf(stdout, - "%s:%d: start = %d %d %d %d %d.\n", - fcnName, mpi_rank, (int)start[0], (int)start[1], + HDfprintf(stdout, + "%s:%d: start = %d %d %d %d %d.\n", + fcnName, mpi_rank, (int)start[0], (int)start[1], (int)start[2], (int)start[3], (int)start[4]); - HDfprintf(stdout, - "%s:%d: stride = %d %d %d %d %d.\n", - fcnName, mpi_rank, (int)stride[0], (int)stride[1], + HDfprintf(stdout, + "%s:%d: stride = %d %d %d %d %d.\n", + fcnName, mpi_rank, (int)stride[0], (int)stride[1], (int)stride[2], (int)stride[3], (int)stride[4]); - HDfprintf(stdout, - "%s:%d: count = %d %d %d %d %d.\n", - fcnName, mpi_rank, (int)count[0], (int)count[1], + HDfprintf(stdout, + "%s:%d: count = %d %d %d %d %d.\n", + fcnName, mpi_rank, (int)count[0], (int)count[1], (int)count[2], (int)count[3], (int)count[4]); - HDfprintf(stdout, - "%s:%d: block = %d %d %d %d %d.\n", - fcnName, mpi_rank, (int)block[0], (int)block[1], + HDfprintf(stdout, + "%s:%d: block = %d %d %d %d %d.\n", + fcnName, mpi_rank, (int)block[0], (int)block[1], (int)block[2], (int)block[3], (int)block[4]); - HDfprintf(stdout, "%s:%d: n-cube extent dims = %d.\n", + HDfprintf(stdout, "%s:%d: n-cube extent dims = %d.\n", fcnName, mpi_rank, H5Sget_simple_extent_ndims(tgt_sid)); - HDfprintf(stdout, "%s:%d: selection rank = %d.\n", + HDfprintf(stdout, "%s:%d: selection rank = %d.\n", fcnName, mpi_rank, sel_rank); #endif if ( first_selection ) { - first_selection = FALSE; + first_selection = FALSE; ret = H5Sselect_hyperslab ( - tgt_sid, + tgt_sid, H5S_SELECT_SET, - &(start[n_cube_offset]), - &(stride[n_cube_offset]), - &(count[n_cube_offset]), + &(start[n_cube_offset]), + &(stride[n_cube_offset]), + &(count[n_cube_offset]), &(block[n_cube_offset]) ); - + VRFY((ret != FAIL), "H5Sselect_hyperslab(SET) succeeded"); } else { ret = H5Sselect_hyperslab ( - tgt_sid, + tgt_sid, H5S_SELECT_OR, - &(start[n_cube_offset]), - &(stride[n_cube_offset]), - &(count[n_cube_offset]), + &(start[n_cube_offset]), + &(stride[n_cube_offset]), + &(count[n_cube_offset]), &(block[n_cube_offset]) ); - + VRFY((ret != FAIL), "H5Sselect_hyperslab(OR) succeeded"); } @@ -2702,7 +2702,7 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, } while ( ( i <= 1 ) && ( 0 >= sel_offset ) ); -#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG HDfprintf(stdout, "%s%d: H5Sget_select_npoints(tgt_sid) = %d.\n", fcnName, mpi_rank, (int)H5Sget_select_npoints(tgt_sid)); #endif /* CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG */ @@ -2722,7 +2722,7 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, VRFY((ret != FAIL), "H5Sselect_hyperslab(AND) succeeded"); -#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__SELECT_CHECKER_BOARD__DEBUG HDfprintf(stdout, "%s%d: H5Sget_select_npoints(tgt_sid) = %d.\n", fcnName, mpi_rank, (int)H5Sget_select_npoints(tgt_sid)); HDfprintf(stdout, "%s%d: done.\n", fcnName, mpi_rank); @@ -2735,57 +2735,57 @@ ckrbrd_hs_dr_pio_test__slct_ckrbrd(const int mpi_rank, /**************************************************************** ** -** ckrbrd_hs_dr_pio_test__verify_data(): +** ckrbrd_hs_dr_pio_test__verify_data(): ** -** Examine the supplied buffer to see if it contains the -** expected data. Return TRUE if it does, and FALSE +** Examine the supplied buffer to see if it contains the +** expected data. Return TRUE if it does, and FALSE ** otherwise. ** -** The supplied buffer is presumed to this process's slice -** of the target data set. Each such slice will be an -** n-cube of rank (rank -1) and the supplied edge_size with -** origin (mpi_rank, 0, ... , 0) in the target data set. +** The supplied buffer is presumed to this process's slice +** of the target data set. Each such slice will be an +** n-cube of rank (rank -1) and the supplied edge_size with +** origin (mpi_rank, 0, ... , 0) in the target data set. ** -** Further, the buffer is presumed to be the result of reading -** or writing a checker board selection of an m (1 <= m < +** Further, the buffer is presumed to be the result of reading +** or writing a checker board selection of an m (1 <= m < ** rank) dimensional slice through this processes slice -** of the target data set. Also, this slice must be parallel -** to the fastest changing indicies. +** of the target data set. Also, this slice must be parallel +** to the fastest changing indicies. ** -** It is further presumed that the buffer was zeroed before -** the read/write, and that the full target data set (i.e. -** the buffer/data set for all processes) was initialized -** with the natural numbers listed in order from the origin -** along the fastest changing axis. +** It is further presumed that the buffer was zeroed before +** the read/write, and that the full target data set (i.e. +** the buffer/data set for all processes) was initialized +** with the natural numbers listed in order from the origin +** along the fastest changing axis. ** ** Thus for a 20x10x10 dataset, the value stored in location -** (x, y, z) (assuming that z is the fastest changing index -** and x the slowest) is assumed to be: +** (x, y, z) (assuming that z is the fastest changing index +** and x the slowest) is assumed to be: ** -** (10 * 10 * x) + (10 * y) + z +** (10 * 10 * x) + (10 * y) + z ** -** Further, supposing that this is process 10, this process's -** slice of the dataset would be a 10 x 10 2-cube with origin -** (10, 0, 0) in the data set, and would be initialize (prior -** to the checkerboard selection) as follows: +** Further, supposing that this is process 10, this process's +** slice of the dataset would be a 10 x 10 2-cube with origin +** (10, 0, 0) in the data set, and would be initialize (prior +** to the checkerboard selection) as follows: ** -** 1000, 1001, 1002, ... 1008, 1009 -** 1010, 1011, 1012, ... 1018, 1019 -** . . . . . -** . . . . . -** . . . . . -** 1090, 1091, 1092, ... 1098, 1099 +** 1000, 1001, 1002, ... 1008, 1009 +** 1010, 1011, 1012, ... 1018, 1019 +** . . . . . +** . . . . . +** . . . . . +** 1090, 1091, 1092, ... 1098, 1099 ** -** In the case of a read from the processors slice of another -** data set of different rank, the values expected will have -** to be adjusted accordingly. This is done via the -** first_expected_val parameter. +** In the case of a read from the processors slice of another +** data set of different rank, the values expected will have +** to be adjusted accordingly. This is done via the +** first_expected_val parameter. ** -** Finally, the function presumes that the first element -** of the buffer resides either at the origin of either -** a selected or an unselected checker. (Translation: -** if partial checkers appear in the buffer, they will -** intersect the edges of the n-cube oposite the origin.) +** Finally, the function presumes that the first element +** of the buffer resides either at the origin of either +** a selected or an unselected checker. (Translation: +** if partial checkers appear in the buffer, they will +** intersect the edges of the n-cube oposite the origin.) ** ****************************************************************/ @@ -2800,7 +2800,7 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, hbool_t buf_starts_in_checker) { #if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG - const char * fcnName = "ckrbrd_hs_dr_pio_test__verify_data():"; + const char * fcnName = "ckrbrd_hs_dr_pio_test__verify_data():"; #endif hbool_t good_data = TRUE; hbool_t in_checker; @@ -2819,9 +2819,9 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, HDassert( checker_edge_size <= edge_size ); HDassert( test_max_rank <= PAR_SS_DR_MAX_RANK ); -#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG - int mpi_rank; + int mpi_rank; MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); HDfprintf(stdout, "%s mpi_rank = %d.\n", fcnName, mpi_rank); @@ -2873,7 +2873,7 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, y = 0; start_in_checker[3] = start_in_checker[2]; do - { + { if ( y >= checker_edge_size ) { start_in_checker[3] = ! start_in_checker[3]; @@ -2882,13 +2882,13 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, m = 0; z = 0; -#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG HDfprintf(stdout, "%d, %d, %d, %d, %d:", i, j, k, l, m); #endif in_checker = start_in_checker[3]; do { -#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG HDfprintf(stdout, " %d", (int)(*val_ptr)); #endif if ( z >= checker_edge_size ) { @@ -2896,21 +2896,21 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, in_checker = ! in_checker; z = 0; } - + if ( in_checker ) { - + if ( *val_ptr != expected_value ) { good_data = FALSE; } - + /* zero out buffer for re-use */ *val_ptr = 0; } else if ( *val_ptr != 0 ) { good_data = FALSE; - + /* zero out buffer for re-use */ *val_ptr = 0; @@ -2920,10 +2920,10 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, expected_value++; m++; z++; - + } while ( ( rank >= (test_max_rank - 4) ) && ( m < edge_size ) ); -#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG +#if CKRBRD_HS_DR_PIO_TEST__VERIFY_DATA__DEBUG HDfprintf(stdout, "\n"); #endif l++; @@ -2949,28 +2949,28 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test__d2m_l2s() + * Function: ckrbrd_hs_dr_pio_test__d2m_l2s() * - * Purpose: Part one of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part one of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can read from disk correctly using checker - * board selections of different rank that + * Verify that we can read from disk correctly using checker + * board selections of different rank that * H5S_select_shape_same() views as being of the same shape. * - * In this function, we test this by reading small_rank - 1 - * checker board slices from the on disk large cube, and - * verifying that the data read is correct. Verify that - * H5S_select_shape_same() returns true on the memory and - * file selections. + * In this function, we test this by reading small_rank - 1 + * checker board slices from the on disk large cube, and + * verifying that the data read is correct. Verify that + * H5S_select_shape_same() returns true on the memory and + * file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/15/11 + * Programmer: JRM -- 9/15/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -2980,17 +2980,17 @@ ckrbrd_hs_dr_pio_test__verify_data(uint32_t * buf_ptr, static void ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__d2m_l2s()"; uint32_t * ptr_0; #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ - hbool_t data_ok = FALSE; - int i, j, k, l; - uint32_t expected_value; - int mpi_rank; /* needed by VRFY */ + hbool_t data_ok = FALSE; + int i, j, k, l; + uint32_t expected_value; + int mpi_rank; /* needed by VRFY */ hsize_t sel_start[PAR_SS_DR_MAX_RANK]; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; @@ -3000,9 +3000,9 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) * of different rank that H5S_select_shape_same() views as being of the * same shape. * - * Start by reading a (small_rank - 1)-D checker board slice from this - * processes slice of the on disk large data set, and verifying that the - * data read is correct. Verify that H5S_select_shape_same() returns + * Start by reading a (small_rank - 1)-D checker board slice from this + * processes slice of the on disk large data set, and verifying that the + * data read is correct. Verify that H5S_select_shape_same() returns * true on the memory and file selections. * * The first step is to set up the needed checker board selection in the @@ -3023,7 +3023,7 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /* zero out the buffer we will be reading into */ HDmemset(tv_ptr->small_ds_slice_buf, 0, sizeof(uint32_t) * tv_ptr->small_ds_slice_size); -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG HDfprintf(stdout, "%s:%d: initial small_ds_slice_buf = ", fcnName, tv_ptr->mpi_rank); ptr_0 = tv_ptr->small_ds_slice_buf; @@ -3032,7 +3032,7 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_0++; } HDfprintf(stdout, "\n"); -#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ +#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ /* set up start, stride, count, and block -- note that we will * change start[] so as to read slices of the large cube. @@ -3052,15 +3052,15 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } } -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG - HDfprintf(stdout, +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG + HDfprintf(stdout, "%s:%d: reading slice from big ds on disk into small ds slice.\n", fcnName, tv_ptr->mpi_rank); -#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ +#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ /* in serial versions of this test, we loop through all the dimensions - * of the large data set. However, in the parallel version, each + * of the large data set. However, in the parallel version, each * process only works with that slice of the large cube indicated - * by its rank -- hence we set the most slowly changing index to + * by its rank -- hence we set the most slowly changing index to * mpi_rank, and don't itterate over it. */ @@ -3073,9 +3073,9 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -3099,7 +3099,7 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -3119,8 +3119,8 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->skips = 0; /* reset the skips counter */ - /* we know that small_rank - 1 >= 1 and that - * large_rank > small_rank by the assertions at the head + /* we know that small_rank - 1 >= 1 and that + * large_rank > small_rank by the assertions at the head * of this function. Thus no need for another inner loop. */ tv_ptr->start[0] = (hsize_t)i; @@ -3155,15 +3155,15 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /* Read selection from disk */ -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", fcnName, - tv_ptr->mpi_rank, tv_ptr->start[0], tv_ptr->start[1], + tv_ptr->mpi_rank, tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], tv_ptr->start[3], tv_ptr->start[4]); HDfprintf(stdout, "%s slice/file extent dims = %d/%d.\n", fcnName, H5Sget_simple_extent_ndims(tv_ptr->small_ds_slice_sid), H5Sget_simple_extent_ndims(tv_ptr->file_large_ds_sid_0)); -#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ +#endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ ret = H5Dread(tv_ptr->large_dataset, H5T_NATIVE_UINT32, @@ -3173,15 +3173,15 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->small_ds_slice_buf); VRFY((ret >= 0), "H5Dread() slice from large ds succeeded."); -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG - HDfprintf(stdout, "%s:%d: H5Dread() returns.\n", +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG + HDfprintf(stdout, "%s:%d: H5Dread() returns.\n", fcnName, tv_ptr->mpi_rank); #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_L2S__DEBUG */ /* verify that expected data is retrieved */ expected_value = (uint32_t) - ((i * tv_ptr->edge_size * tv_ptr->edge_size * + ((i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -3197,7 +3197,7 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) (hbool_t)TRUE ); - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "small slice read from large ds data good."); (tv_ptr->tests_run)++; @@ -3225,27 +3225,27 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test__d2m_s2l() + * Function: ckrbrd_hs_dr_pio_test__d2m_s2l() * - * Purpose: Part two of a series of tests of I/O to/from hyperslab - * selections of different rank in the parallel. + * Purpose: Part two of a series of tests of I/O to/from hyperslab + * selections of different rank in the parallel. * - * Verify that we can read from disk correctly using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can read from disk correctly using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * In this function, we test this by reading checker board - * slices of the on disk small data set into slices through - * the in memory large data set, and verify that the correct - * data (and only the correct data) is read. + * In this function, we test this by reading checker board + * slices of the on disk small data set into slices through + * the in memory large data set, and verify that the correct + * data (and only the correct data) is read. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/15/11 + * Programmer: JRM -- 8/15/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -3255,27 +3255,27 @@ ckrbrd_hs_dr_pio_test__d2m_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) static void ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__d2m_s2l()"; #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG */ - hbool_t data_ok = FALSE; - int i, j, k, l; + hbool_t data_ok = FALSE; + int i, j, k, l; size_t u; size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; - int mpi_rank; /* needed by VRFY */ + int mpi_rank; /* needed by VRFY */ hsize_t sel_start[PAR_SS_DR_MAX_RANK]; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; - /* similarly, read slices of the on disk small data set into slices - * through the in memory large data set, and verify that the correct + /* similarly, read slices of the on disk small data set into slices + * through the in memory large data set, and verify that the correct * data (and only the correct data) is read. */ @@ -3290,8 +3290,8 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->small_rank - 1, sel_start); -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG - HDfprintf(stdout, +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG + HDfprintf(stdout, "%s reading slices of on disk small data set into slices of big data set.\n", fcnName); #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG */ @@ -3301,7 +3301,7 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /* set up start, stride, count, and block -- note that we will * change start[] so as to read the slice of the small data set - * into different slices of the process slice of the large data + * into different slices of the process slice of the large data * set. */ for ( i = 0; i < PAR_SS_DR_MAX_RANK; i++ ) { @@ -3320,11 +3320,11 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } /* in serial versions of this test, we loop through all the dimensions - * of the large data set that don't appear in the small data set. + * of the large data set that don't appear in the small data set. * - * However, in the parallel version, each process only works with that - * slice of the large (and small) data set indicated by its rank -- hence - * we set the most slowly changing index to mpi_rank, and don't itterate + * However, in the parallel version, each process only works with that + * slice of the large (and small) data set indicated by its rank -- hence + * we set the most slowly changing index to mpi_rank, and don't itterate * over it. */ @@ -3338,9 +3338,9 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -3364,7 +3364,7 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -3421,11 +3421,11 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /* Read selection from disk */ -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", - fcnName, tv_ptr->mpi_rank, - tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], - tv_ptr->start[3], tv_ptr->start[4]); +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", + fcnName, tv_ptr->mpi_rank, + tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], + tv_ptr->start[3], tv_ptr->start[4]); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, H5Sget_simple_extent_ndims(tv_ptr->large_ds_slice_sid), @@ -3444,21 +3444,21 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) */ data_ok = TRUE; ptr_1 = tv_ptr->large_ds_buf_1; - expected_value = + expected_value = (uint32_t)((size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size); start_index = (size_t)( - (i * tv_ptr->edge_size * tv_ptr->edge_size * + (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + (l * tv_ptr->edge_size)); stop_index = start_index + tv_ptr->small_ds_slice_size - 1; -#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__D2M_S2L__DEBUG { int m, n; - HDfprintf(stdout, "%s:%d: expected_value = %d.\n", + HDfprintf(stdout, "%s:%d: expected_value = %d.\n", fcnName, tv_ptr->mpi_rank, expected_value); HDfprintf(stdout, "%s:%d: start/stop index = %d/%d.\n", fcnName, tv_ptr->mpi_rank, start_index, stop_index); @@ -3493,7 +3493,7 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1++; } - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "slice read from small to large ds data good(1)."); data_ok = ckrbrd_hs_dr_pio_test__verify_data @@ -3506,7 +3506,7 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) (hbool_t)TRUE ); - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "slice read from small to large ds data good(2)."); @@ -3525,7 +3525,7 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) ptr_1++; } - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "slice read from small to large ds data good(3)."); (tv_ptr->tests_run)++; @@ -3553,31 +3553,31 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test__m2d_l2s() + * Function: ckrbrd_hs_dr_pio_test__m2d_l2s() * - * Purpose: Part three of a series of tests of I/O to/from checker - * board hyperslab selections of different rank in the - * parallel. + * Purpose: Part three of a series of tests of I/O to/from checker + * board hyperslab selections of different rank in the + * parallel. * - * Verify that we can write from memory to file using checker - * board selections of different rank that - * H5S_select_shape_same() views as being of the same shape. + * Verify that we can write from memory to file using checker + * board selections of different rank that + * H5S_select_shape_same() views as being of the same shape. * - * Do this by writing small_rank - 1 dimensional checker - * board slices from the in memory large data set to the on - * disk small cube dataset. After each write, read the - * slice of the small dataset back from disk, and verify - * that it contains the expected data. Verify that - * H5S_select_shape_same() returns true on the memory and - * file selections. + * Do this by writing small_rank - 1 dimensional checker + * board slices from the in memory large data set to the on + * disk small cube dataset. After each write, read the + * slice of the small dataset back from disk, and verify + * that it contains the expected data. Verify that + * H5S_select_shape_same() returns true on the memory and + * file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/15/11 + * Programmer: JRM -- 8/15/11 * * Modifications: * - * None. + * None. * *------------------------------------------------------------------------- */ @@ -3587,21 +3587,21 @@ ckrbrd_hs_dr_pio_test__d2m_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) static void ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_l2s()"; #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG */ - hbool_t data_ok = FALSE; - hbool_t mis_match = FALSE; - int i, j, k, l; + hbool_t data_ok = FALSE; + hbool_t mis_match = FALSE; + int i, j, k, l; size_t u; size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; - int mpi_rank; /* needed by VRFY */ + int mpi_rank; /* needed by VRFY */ hsize_t sel_start[PAR_SS_DR_MAX_RANK]; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; @@ -3612,9 +3612,9 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) * H5S_select_shape_same() views as being of the same shape. * * Start by writing small_rank - 1 D slices from the in memory large data - * set to the on disk small dataset. After each write, read the slice of - * the small dataset back from disk, and verify that it contains the - * expected data. Verify that H5S_select_shape_same() returns true on + * set to the on disk small dataset. After each write, read the slice of + * the small dataset back from disk, and verify that it contains the + * expected data. Verify that H5S_select_shape_same() returns true on * the memory and file selections. */ @@ -3682,18 +3682,18 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) HDmemset(tv_ptr->small_ds_buf_1, 0, sizeof(uint32_t) * tv_ptr->small_ds_size); -#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG - HDfprintf(stdout, +#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG + HDfprintf(stdout, "%s writing checker boards selections of slices from big ds to slices of small ds on disk.\n", fcnName); #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG */ /* in serial versions of this test, we loop through all the dimensions - * of the large data set that don't appear in the small data set. + * of the large data set that don't appear in the small data set. * - * However, in the parallel version, each process only works with that - * slice of the large (and small) data set indicated by its rank -- hence - * we set the most slowly changing index to mpi_rank, and don't itterate + * However, in the parallel version, each process only works with that + * slice of the large (and small) data set indicated by its rank -- hence + * we set the most slowly changing index to mpi_rank, and don't itterate * over it. */ @@ -3707,9 +3707,9 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -3734,7 +3734,7 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -3758,7 +3758,7 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) * by the assertions at the head of this function. Thus no * need for another inner loop. */ - + /* zero out this rank's slice of the on disk small data set */ ret = H5Dwrite(tv_ptr->small_dataset, H5T_NATIVE_UINT32, @@ -3767,7 +3767,7 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->xfer_plist, tv_ptr->small_ds_buf_2); VRFY((ret >= 0), "H5Dwrite() zero slice to small ds succeeded."); - + /* select the portion of the in memory large cube from which we * are going to write data. */ @@ -3776,13 +3776,13 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->start[2] = (hsize_t)k; tv_ptr->start[3] = (hsize_t)l; tv_ptr->start[4] = 0; - + HDassert((tv_ptr->start[0] == 0)||(0 < tv_ptr->small_ds_offset + 1)); HDassert((tv_ptr->start[1] == 0)||(1 < tv_ptr->small_ds_offset + 1)); HDassert((tv_ptr->start[2] == 0)||(2 < tv_ptr->small_ds_offset + 1)); HDassert((tv_ptr->start[3] == 0)||(3 < tv_ptr->small_ds_offset + 1)); HDassert((tv_ptr->start[4] == 0)||(4 < tv_ptr->small_ds_offset + 1)); - + ckrbrd_hs_dr_pio_test__slct_ckrbrd ( tv_ptr->mpi_rank, @@ -3793,26 +3793,26 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->small_rank - 1, tv_ptr->start ); - - + + /* verify that H5S_select_shape_same() reports the in - * memory checkerboard selection of the slice through the + * memory checkerboard selection of the slice through the * large dataset and the checkerboard selection of the process * slice of the small data set as having the same shape. */ check = H5S_select_shape_same_test(tv_ptr->file_small_ds_sid_1, tv_ptr->mem_large_ds_sid); VRFY((check == TRUE), "H5S_select_shape_same_test passed."); - - - /* write the checker board selection of the slice from the in - * memory large data set to the slice of the on disk small - * dataset. + + + /* write the checker board selection of the slice from the in + * memory large data set to the slice of the on disk small + * dataset. */ -#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", +#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", fcnName, tv_ptr->mpi_rank, - tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], + tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], tv_ptr->start[3], tv_ptr->start[4]); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -3826,8 +3826,8 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->xfer_plist, tv_ptr->large_ds_buf_0); VRFY((ret >= 0), "H5Dwrite() slice to large ds succeeded."); - - + + /* read the on disk process slice of the small dataset into memory */ ret = H5Dread(tv_ptr->small_dataset, H5T_NATIVE_UINT32, @@ -3836,30 +3836,30 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->xfer_plist, tv_ptr->small_ds_buf_1); VRFY((ret >= 0), "H5Dread() slice from small ds succeeded."); - - + + /* verify that expected data is retrieved */ - + mis_match = FALSE; - + expected_value = (uint32_t)( - (i * tv_ptr->edge_size * tv_ptr->edge_size * + (i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + (l * tv_ptr->edge_size)); - + start_index = (size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size; stop_index = start_index + tv_ptr->small_ds_slice_size - 1; - + HDassert( start_index < stop_index ); HDassert( stop_index <= tv_ptr->small_ds_size ); - + data_ok = TRUE; - + ptr_1 = tv_ptr->small_ds_buf_1; for ( u = 0; u < start_index; u++, ptr_1++ ) { - + if ( *ptr_1 != 0 ) { data_ok = FALSE; @@ -3888,7 +3888,7 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) } } - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "large slice write slice to small slice data good."); (tv_ptr->tests_run)++; @@ -3916,31 +3916,31 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test__m2d_s2l() + * Function: ckrbrd_hs_dr_pio_test__m2d_s2l() * - * Purpose: Part four of a series of tests of I/O to/from checker - * board hyperslab selections of different rank in the parallel. + * Purpose: Part four of a series of tests of I/O to/from checker + * board hyperslab selections of different rank in the parallel. * - * Verify that we can write from memory to file using - * selections of different rank that H5S_select_shape_same() - * views as being of the same shape. + * Verify that we can write from memory to file using + * selections of different rank that H5S_select_shape_same() + * views as being of the same shape. * - * Do this by writing checker board selections of the contents - * of the process's slice of the in memory small data set to - * slices of the on disk large data set. After each write, - * read the process's slice of the large data set back into - * memory, and verify that it contains the expected data. + * Do this by writing checker board selections of the contents + * of the process's slice of the in memory small data set to + * slices of the on disk large data set. After each write, + * read the process's slice of the large data set back into + * memory, and verify that it contains the expected data. * - * Verify that H5S_select_shape_same() returns true on the - * memory and file selections. + * Verify that H5S_select_shape_same() returns true on the + * memory and file selections. * - * Return: void + * Return: void * - * Programmer: JRM -- 8/15/11 + * Programmer: JRM -- 8/15/11 * * Modifications: * - * None + * None * *------------------------------------------------------------------------- */ @@ -3950,31 +3950,31 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr) static void ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) { -#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG +#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_s2l()"; #endif /* CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG */ - hbool_t data_ok = FALSE; - hbool_t mis_match = FALSE; - int i, j, k, l; + hbool_t data_ok = FALSE; + hbool_t mis_match = FALSE; + int i, j, k, l; size_t u; size_t start_index; size_t stop_index; - uint32_t expected_value; + uint32_t expected_value; uint32_t * ptr_1; - int mpi_rank; /* needed by VRFY */ + int mpi_rank; /* needed by VRFY */ hsize_t sel_start[PAR_SS_DR_MAX_RANK]; htri_t check; /* Shape comparison return value */ - herr_t ret; /* Generic return value */ + herr_t ret; /* Generic return value */ /* initialize the local copy of mpi_rank */ mpi_rank = tv_ptr->mpi_rank; - /* Now write the contents of the process's slice of the in memory - * small data set to slices of the on disk large data set. After + /* Now write the contents of the process's slice of the in memory + * small data set to slices of the on disk large data set. After * each write, read the process's slice of the large data set back - * into memory, and verify that it contains the expected data. - * Verify that H5S_select_shape_same() returns true on the memory + * into memory, and verify that it contains the expected data. + * Verify that H5S_select_shape_same() returns true on the memory * and file selections. */ @@ -4007,7 +4007,7 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->block); VRFY((ret >= 0), "H5Sselect_hyperslab(tv_ptr->mem_large_ds_sid, set) suceeded"); - /* setup a checkerboard selection of the slice of the in memory small + /* setup a checkerboard selection of the slice of the in memory small * data set associated with the process's mpi rank. */ @@ -4023,7 +4023,7 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) sel_start); /* set up start, stride, count, and block -- note that we will - * change start[] so as to write checkerboard selections of slices + * change start[] so as to write checkerboard selections of slices * of the small data set to slices of the large data set. */ for ( i = 0; i < PAR_SS_DR_MAX_RANK; i++ ) { @@ -4045,7 +4045,7 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) HDmemset(tv_ptr->large_ds_buf_1, 0, sizeof(uint32_t) * tv_ptr->large_ds_size); #if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG - HDfprintf(stdout, + HDfprintf(stdout, "%s writing process checkerboard selections of slices of small ds to process slices of large ds on disk.\n", fcnName); #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG */ @@ -4059,9 +4059,9 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) i = 0; } - /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to + /* since large_rank is at most PAR_SS_DR_MAX_RANK, no need to * loop over it -- either we are setting i to mpi_rank, or - * we are setting it to zero. It will not change during the + * we are setting it to zero. It will not change during the * test. */ @@ -4085,7 +4085,7 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } do { - /* since small rank >= 2 and large_rank > small_rank, we + /* since small rank >= 2 and large_rank > small_rank, we * have large_rank >= 3. Since PAR_SS_DR_MAX_RANK == 5 * (baring major re-orgaization), this gives us: * @@ -4160,13 +4160,13 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) VRFY((check == TRUE), "H5S_select_shape_same_test passed"); - /* write the small data set slice from memory to the - * target slice of the disk data set + /* write the small data set slice from memory to the + * target slice of the disk data set */ -#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG - HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", +#if CHECKER_BOARD_HS_DR_PIO_TEST__M2D_S2L__DEBUG + HDfprintf(stdout, "%s:%d: start = %d %d %d %d %d.\n", fcnName, tv_ptr->mpi_rank, - tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], + tv_ptr->start[0], tv_ptr->start[1], tv_ptr->start[2], tv_ptr->start[3], tv_ptr->start[4]); HDfprintf(stdout, "%s:%d: mem/file extent dims = %d/%d.\n", fcnName, tv_ptr->mpi_rank, @@ -4179,11 +4179,11 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->file_large_ds_sid_1, tv_ptr->xfer_plist, tv_ptr->small_ds_buf_0); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Dwrite of small ds slice to large ds succeeded"); - /* read this processes slice on the on disk large + /* read this processes slice on the on disk large * data set into memory. */ @@ -4193,18 +4193,18 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) tv_ptr->file_large_ds_sid_0, tv_ptr->xfer_plist, tv_ptr->large_ds_buf_1); - VRFY((ret != FAIL), + VRFY((ret != FAIL), "H5Dread() of process slice of large ds succeeded"); /* verify that the expected data and only the * expected data was read. */ - expected_value = + expected_value = (uint32_t)((size_t)(tv_ptr->mpi_rank) * tv_ptr->small_ds_slice_size); start_index = (size_t) - ((i * tv_ptr->edge_size * tv_ptr->edge_size * + ((i * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (j * tv_ptr->edge_size * tv_ptr->edge_size * tv_ptr->edge_size) + (k * tv_ptr->edge_size * tv_ptr->edge_size) + @@ -4250,7 +4250,7 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) } } - VRFY((data_ok == TRUE), + VRFY((data_ok == TRUE), "small ds cb slice write to large ds slice data good."); (tv_ptr->tests_run)++; @@ -4278,22 +4278,22 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr) /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test__run_test() + * Function: ckrbrd_hs_dr_pio_test__run_test() * - * Purpose: Test I/O to/from checkerboard selections of hyperslabs of - * different rank in the parallel. + * Purpose: Test I/O to/from checkerboard selections of hyperslabs of + * different rank in the parallel. * - * Return: void + * Return: void * - * Programmer: JRM -- 10/10/09 + * Programmer: JRM -- 10/10/09 * * Modifications: * - * JRM -- 9/16/10 - * Added the express_test parameter. Use it to control - * whether we set an alignment, and whether we allocate - * chunks such that no two processes will normally touch - * the same chunk. + * JRM -- 9/16/10 + * Added the express_test parameter. Use it to control + * whether we set an alignment, and whether we allocate + * chunks such that no two processes will normally touch + * the same chunk. * *------------------------------------------------------------------------- */ @@ -4320,10 +4320,10 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, #if CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG const char *fcnName = "ckrbrd_hs_dr_pio_test__run_test()"; #endif /* CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG */ - int mpi_rank; /* needed by VRFY */ - struct hs_dr_pio_test_vars_t test_vars = + int mpi_rank; /* needed by VRFY */ + struct hs_dr_pio_test_vars_t test_vars = { - /* int mpi_size = */ -1, + /* int mpi_size = */ -1, /* int mpi_rank = */ -1, /* MPI_Comm mpi_comm = */ MPI_COMM_NULL, /* MPI_Inf mpi_info = */ MPI_INFO_NULL, @@ -4339,7 +4339,7 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, /* uint32_t * small_ds_buf_2 = */ NULL, /* uint32_t * small_ds_slice_buf = */ NULL, /* uint32_t * large_ds_buf_0 = */ NULL, - /* uint32_t * large_ds_buf_1 = */ NULL, + /* uint32_t * large_ds_buf_1 = */ NULL, /* uint32_t * large_ds_buf_2 = */ NULL, /* uint32_t * large_ds_slice_buf = */ NULL, /* int small_ds_offset = */ -1, @@ -4376,17 +4376,17 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, /* hsize_t * stride_ptr = */ NULL, /* hsize_t * count_ptr = */ NULL, /* hsize_t * block_ptr = */ NULL, - /* int skips = */ 0, - /* int max_skips = */ 0, + /* int skips = */ 0, + /* int max_skips = */ 0, /* int64_t total_tests = */ 0, /* int64_t tests_run = */ 0, /* int64_t tests_skipped = */ 0 }; struct hs_dr_pio_test_vars_t * tv_ptr = &test_vars; - hs_dr_pio_test__setup(test_num, edge_size, checker_edge_size, - chunk_edge_size, small_rank, large_rank, - use_collective_io, dset_type, express_test, + hs_dr_pio_test__setup(test_num, edge_size, checker_edge_size, + chunk_edge_size, small_rank, large_rank, + use_collective_io, dset_type, express_test, tv_ptr); @@ -4412,9 +4412,9 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, * of different rank that H5S_select_shape_same() views as being of the * same shape. * - * Start by reading a (small_rank - 1)-D slice from this processes slice - * of the on disk large data set, and verifying that the data read is - * correct. Verify that H5S_select_shape_same() returns true on the + * Start by reading a (small_rank - 1)-D slice from this processes slice + * of the on disk large data set, and verifying that the data read is + * correct. Verify that H5S_select_shape_same() returns true on the * memory and file selections. * * The first step is to set up the needed checker board selection in the @@ -4424,8 +4424,8 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, ckrbrd_hs_dr_pio_test__d2m_l2s(tv_ptr); - /* similarly, read slices of the on disk small data set into slices - * through the in memory large data set, and verify that the correct + /* similarly, read slices of the on disk small data set into slices + * through the in memory large data set, and verify that the correct * data (and only the correct data) is read. */ @@ -4437,20 +4437,20 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, * H5S_select_shape_same() views as being of the same shape. * * Start by writing small_rank - 1 D slices from the in memory large data - * set to the on disk small dataset. After each write, read the slice of - * the small dataset back from disk, and verify that it contains the - * expected data. Verify that H5S_select_shape_same() returns true on + * set to the on disk small dataset. After each write, read the slice of + * the small dataset back from disk, and verify that it contains the + * expected data. Verify that H5S_select_shape_same() returns true on * the memory and file selections. */ ckrbrd_hs_dr_pio_test__m2d_l2s(tv_ptr); - /* Now write the contents of the process's slice of the in memory - * small data set to slices of the on disk large data set. After + /* Now write the contents of the process's slice of the in memory + * small data set to slices of the on disk large data set. After * each write, read the process's slice of the large data set back - * into memory, and verify that it contains the expected data. - * Verify that H5S_select_shape_same() returns true on the memory + * into memory, and verify that it contains the expected data. + * Verify that H5S_select_shape_same() returns true on the memory * and file selections. */ @@ -4459,8 +4459,8 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, #if CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG if ( MAINPROCESS ) { - HDfprintf(stdout, - "test %d: Subtests complete -- tests run/skipped/total = %lld/%lld/%lld.\n", + HDfprintf(stdout, + "test %d: Subtests complete -- tests run/skipped/total = %lld/%lld/%lld.\n", test_num, (long long)(tv_ptr->tests_run), (long long)(tv_ptr->tests_skipped), (long long)(tv_ptr->total_tests)); } @@ -4485,28 +4485,28 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num, /*------------------------------------------------------------------------- - * Function: ckrbrd_hs_dr_pio_test() + * Function: ckrbrd_hs_dr_pio_test() * - * Purpose: Test I/O to/from hyperslab selections of different rank in - * the parallel case. + * Purpose: Test I/O to/from hyperslab selections of different rank in + * the parallel case. * - * Return: void + * Return: void * - * Programmer: JRM -- 9/18/09 + * Programmer: JRM -- 9/18/09 * * Modifications: * - * Modified function to take a sample of the run times - * of the different tests, and skip some of them if - * run times are too long. + * Modified function to take a sample of the run times + * of the different tests, and skip some of them if + * run times are too long. * - * We need to do this because Lustre runns very slowly - * if two or more processes are banging on the same - * block of memory. - * JRM -- 9/10/10 - * Break this one big test into 4 smaller tests according - * to {independent,collective}x{contigous,chunked} datasets. - * AKC -- 2010/01/17 + * We need to do this because Lustre runns very slowly + * if two or more processes are banging on the same + * block of memory. + * JRM -- 9/10/10 + * Break this one big test into 4 smaller tests according + * to {independent,collective}x{contigous,chunked} datasets. + * AKC -- 2010/01/17 * *------------------------------------------------------------------------- */ @@ -4516,16 +4516,16 @@ ckrbrd_hs_dr_pio_test(ShapeSameTestMethods sstest_type) { int express_test; int local_express_test; - int mpi_size = -1; + int mpi_size = -1; int mpi_rank = -1; - int test_num = 0; - int edge_size; + int test_num = 0; + int edge_size; int checker_edge_size = 3; - int chunk_edge_size = 0; - int small_rank = 3; - int large_rank = 4; - int mpi_result; - hid_t dset_type = H5T_NATIVE_UINT; + int chunk_edge_size = 0; + int small_rank = 3; + int large_rank = 4; + int mpi_result; + hid_t dset_type = H5T_NATIVE_UINT; int skips = 0; int max_skips = 0; /* The following table list the number of sub-tests skipped between @@ -4564,13 +4564,13 @@ ckrbrd_hs_dr_pio_test(ShapeSameTestMethods sstest_type) max_skips = max_skips_tbl[local_express_test]; } -#if 0 +#if 0 { int DebugWait = 1; - + while (DebugWait) ; } -#endif +#endif for ( large_rank = 3; large_rank <= PAR_SS_DR_MAX_RANK; large_rank++ ) { @@ -4700,15 +4700,15 @@ int dim0; int dim1; int chunkdim0; int chunkdim1; -int nerrors = 0; /* errors count */ -int ndatasets = 300; /* number of datasets to create*/ +int nerrors = 0; /* errors count */ +int ndatasets = 300; /* number of datasets to create*/ int ngroups = 512; /* number of groups to create in root * group. */ -int facc_type = FACC_MPIO; /*Test file access type */ +int facc_type = FACC_MPIO; /*Test file access type */ int dxfer_coll_type = DXFER_COLLECTIVE_IO; -H5E_auto2_t old_func; /* previous error handler */ -void *old_client_data; /* previous error handler arg.*/ +H5E_auto2_t old_func; /* previous error handler */ +void *old_client_data; /* previous error handler arg.*/ /* other option flags */ @@ -4720,10 +4720,10 @@ void *old_client_data; /* previous error handler arg.*/ #define NFILENAME 2 #define PARATESTFILE filenames[0] const char *FILENAME[NFILENAME]={ - "ShapeSameTest", - NULL}; -char filenames[NFILENAME][PATH_MAX]; -hid_t fapl; /* file access property list */ + "ShapeSameTest", + NULL}; +char filenames[NFILENAME][PATH_MAX]; +hid_t fapl; /* file access property list */ #ifdef USE_PAUSE /* pause the process for a moment to allow debugger to attach if desired. */ @@ -4736,7 +4736,7 @@ void pause_proc(void) { int pid; - h5_stat_t statbuf; + h5_stat_t statbuf; char greenlight[] = "go"; int maxloop = 10; int loops = 0; @@ -4753,15 +4753,15 @@ void pause_proc(void) MPI_Get_processor_name(mpi_name, &mpi_namelen); if (MAINPROCESS) - while ((HDstat(greenlight, &statbuf) == -1) && loops < maxloop){ - if (!loops++){ - printf("Proc %d (%*s, %d): to debug, attach %d\n", - mpi_rank, mpi_namelen, mpi_name, pid, pid); - } - printf("waiting(%ds) for file %s ...\n", time_int, greenlight); - fflush(stdout); + while ((HDstat(greenlight, &statbuf) == -1) && loops < maxloop){ + if (!loops++){ + printf("Proc %d (%*s, %d): to debug, attach %d\n", + mpi_rank, mpi_namelen, mpi_name, pid, pid); + } + printf("waiting(%ds) for file %s ...\n", time_int, greenlight); + fflush(stdout); HDsleep(time_int); - } + } MPI_Barrier(MPI_COMM_WORLD); } @@ -4773,7 +4773,7 @@ int MPI_Init(int *argc, char ***argv) pause_proc(); return (ret_code); } -#endif /* USE_PAUSE */ +#endif /* USE_PAUSE */ /* @@ -4783,15 +4783,15 @@ static void usage(void) { printf(" [-r] [-w] [-m<n_datasets>] [-n<n_groups>] " - "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n"); + "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n"); printf("\t-m<n_datasets>" - "\tset number of datasets for the multiple dataset test\n"); + "\tset number of datasets for the multiple dataset test\n"); printf("\t-n<n_groups>" "\tset number of groups for the multiple group test\n"); printf("\t-f <prefix>\tfilename prefix\n"); printf("\t-2\t\tuse Split-file together with MPIO\n"); printf("\t-d <factor0> <factor1>\tdataset dimensions factors. Defaults (%d,%d)\n", - ROW_FACTOR, COL_FACTOR); + ROW_FACTOR, COL_FACTOR); printf("\t-c <dim0> <dim1>\tdataset chunk dimensions. Defaults (dim0/10,dim1/10)\n"); printf("\n"); } @@ -4803,7 +4803,7 @@ usage(void) static int parse_options(int argc, char **argv) { - int mpi_size, mpi_rank; /* mpi variables */ + int mpi_size, mpi_rank; /* mpi variables */ MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); @@ -4814,107 +4814,107 @@ parse_options(int argc, char **argv) chunkdim1 = (dim1+9)/10; while (--argc){ - if (**(++argv) != '-'){ - break; - }else{ - switch(*(*argv+1)){ - case 'm': ndatasets = atoi((*argv+1)+1); - if (ndatasets < 0){ - nerrors++; - return(1); - } - break; - case 'n': ngroups = atoi((*argv+1)+1); - if (ngroups < 0){ + if (**(++argv) != '-'){ + break; + }else{ + switch(*(*argv+1)){ + case 'm': ndatasets = atoi((*argv+1)+1); + if (ndatasets < 0){ + nerrors++; + return(1); + } + break; + case 'n': ngroups = atoi((*argv+1)+1); + if (ngroups < 0){ nerrors++; return(1); - } + } break; - case 'f': if (--argc < 1) { - nerrors++; - return(1); - } - if (**(++argv) == '-') { - nerrors++; - return(1); - } - paraprefix = *argv; - break; - case 'i': /* Collective MPI-IO access with independent IO */ - dxfer_coll_type = DXFER_INDEPENDENT_IO; - break; - case '2': /* Use the split-file driver with MPIO access */ - /* Can use $HDF5_METAPREFIX to define the */ - /* meta-file-prefix. */ - facc_type = FACC_MPIO | FACC_SPLIT; - break; - case 'd': /* dimensizes */ - if (--argc < 2){ - nerrors++; - return(1); - } - dim0 = atoi(*(++argv))*mpi_size; - argc--; - dim1 = atoi(*(++argv))*mpi_size; - /* set default chunkdim sizes too */ - chunkdim0 = (dim0+9)/10; - chunkdim1 = (dim1+9)/10; - break; - case 'c': /* chunk dimensions */ - if (--argc < 2){ - nerrors++; - return(1); - } - chunkdim0 = atoi(*(++argv)); - argc--; - chunkdim1 = atoi(*(++argv)); - break; - case 'h': /* print help message--return with nerrors set */ - return(1); - default: printf("Illegal option(%s)\n", *argv); - nerrors++; - return(1); - } - } + case 'f': if (--argc < 1) { + nerrors++; + return(1); + } + if (**(++argv) == '-') { + nerrors++; + return(1); + } + paraprefix = *argv; + break; + case 'i': /* Collective MPI-IO access with independent IO */ + dxfer_coll_type = DXFER_INDEPENDENT_IO; + break; + case '2': /* Use the split-file driver with MPIO access */ + /* Can use $HDF5_METAPREFIX to define the */ + /* meta-file-prefix. */ + facc_type = FACC_MPIO | FACC_SPLIT; + break; + case 'd': /* dimensizes */ + if (--argc < 2){ + nerrors++; + return(1); + } + dim0 = atoi(*(++argv))*mpi_size; + argc--; + dim1 = atoi(*(++argv))*mpi_size; + /* set default chunkdim sizes too */ + chunkdim0 = (dim0+9)/10; + chunkdim1 = (dim1+9)/10; + break; + case 'c': /* chunk dimensions */ + if (--argc < 2){ + nerrors++; + return(1); + } + chunkdim0 = atoi(*(++argv)); + argc--; + chunkdim1 = atoi(*(++argv)); + break; + case 'h': /* print help message--return with nerrors set */ + return(1); + default: printf("Illegal option(%s)\n", *argv); + nerrors++; + return(1); + } + } } /*while*/ /* check validity of dimension and chunk sizes */ if (dim0 <= 0 || dim1 <= 0){ - printf("Illegal dim sizes (%d, %d)\n", dim0, dim1); - nerrors++; - return(1); + printf("Illegal dim sizes (%d, %d)\n", dim0, dim1); + nerrors++; + return(1); } if (chunkdim0 <= 0 || chunkdim1 <= 0){ - printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1); - nerrors++; - return(1); + printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1); + nerrors++; + return(1); } /* Make sure datasets can be divided into equal portions by the processes */ if ((dim0 % mpi_size) || (dim1 % mpi_size)){ - if (MAINPROCESS) - printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n", - dim0, dim1, mpi_size); - nerrors++; - return(1); + if (MAINPROCESS) + printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n", + dim0, dim1, mpi_size); + nerrors++; + return(1); } /* compose the test filenames */ { - int i, n; - - n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */ - - for (i=0; i < n; i++) - if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i])) - == NULL){ - printf("h5_fixname failed\n"); - nerrors++; - return(1); - } - printf("Test filenames are:\n"); - for (i=0; i < n; i++) - printf(" %s\n", filenames[i]); + int i, n; + + n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */ + + for (i=0; i < n; i++) + if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i])) + == NULL){ + printf("h5_fixname failed\n"); + nerrors++; + return(1); + } + printf("Test filenames are:\n"); + for (i=0; i < n; i++) + printf(" %s\n", filenames[i]); } return(0); @@ -4929,7 +4929,7 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type) { hid_t ret_pl = -1; herr_t ret; /* generic return value */ - int mpi_rank; /* mpi variables */ + int mpi_rank; /* mpi variables */ /* need the rank for error checking macros */ MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); @@ -4938,36 +4938,36 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type) VRFY((ret_pl >= 0), "H5P_FILE_ACCESS"); if (l_facc_type == FACC_DEFAULT) - return (ret_pl); + return (ret_pl); if (l_facc_type == FACC_MPIO){ - /* set Parallel access with communicator */ - ret = H5Pset_fapl_mpio(ret_pl, comm, info); - VRFY((ret >= 0), ""); + /* set Parallel access with communicator */ + ret = H5Pset_fapl_mpio(ret_pl, comm, info); + VRFY((ret >= 0), ""); ret = H5Pset_all_coll_metadata_ops(ret_pl, TRUE); - VRFY((ret >= 0), ""); + VRFY((ret >= 0), ""); ret = H5Pset_coll_metadata_write(ret_pl, TRUE); - VRFY((ret >= 0), ""); - return(ret_pl); + VRFY((ret >= 0), ""); + return(ret_pl); } if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){ - hid_t mpio_pl; - - mpio_pl = H5Pcreate (H5P_FILE_ACCESS); - VRFY((mpio_pl >= 0), ""); - /* set Parallel access with communicator */ - ret = H5Pset_fapl_mpio(mpio_pl, comm, info); - VRFY((ret >= 0), ""); - - /* setup file access template */ - ret_pl = H5Pcreate (H5P_FILE_ACCESS); - VRFY((ret_pl >= 0), ""); - /* set Parallel access with communicator */ - ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl); - VRFY((ret >= 0), "H5Pset_fapl_split succeeded"); - H5Pclose(mpio_pl); - return(ret_pl); + hid_t mpio_pl; + + mpio_pl = H5Pcreate (H5P_FILE_ACCESS); + VRFY((mpio_pl >= 0), ""); + /* set Parallel access with communicator */ + ret = H5Pset_fapl_mpio(mpio_pl, comm, info); + VRFY((ret >= 0), ""); + + /* setup file access template */ + ret_pl = H5Pcreate (H5P_FILE_ACCESS); + VRFY((ret_pl >= 0), ""); + /* set Parallel access with communicator */ + ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl); + VRFY((ret >= 0), "H5Pset_fapl_split succeeded"); + H5Pclose(mpio_pl); + return(ret_pl); } /* unknown file access types */ @@ -5035,7 +5035,7 @@ sschecker4(void) int main(int argc, char **argv) { - int mpi_size, mpi_rank; /* mpi variables */ + int mpi_size, mpi_rank; /* mpi variables */ #ifndef H5_HAVE_WIN32_API /* Un-buffer the stdout and stderr */ @@ -5051,10 +5051,10 @@ int main(int argc, char **argv) dim1 = COL_FACTOR*mpi_size; if (MAINPROCESS){ - printf("===================================\n"); - printf("Shape Same Tests Start\n"); - printf(" express_test = %d.\n", GetTestExpress()); - printf("===================================\n"); + printf("===================================\n"); + printf("Shape Same Tests Start\n"); + printf(" express_test = %d.\n", GetTestExpress()); + printf("===================================\n"); } /* Attempt to turn off atexit post processing so that in case errors @@ -5063,7 +5063,7 @@ int main(int argc, char **argv) * calls. By then, MPI calls may not work. */ if (H5dont_atexit() < 0){ - printf("%d: Failed to turn off atexit processing. Continue.\n", mpi_rank); + printf("%d: Failed to turn off atexit processing. Continue.\n", mpi_rank); }; H5open(); h5_show_hostname(); @@ -5073,23 +5073,23 @@ int main(int argc, char **argv) /* Shape Same tests using contigous hyperslab */ AddTest("sscontig1", sscontig1, NULL, - "Cntg hslab, ind IO, cntg dsets", PARATESTFILE); + "Cntg hslab, ind IO, cntg dsets", PARATESTFILE); AddTest("sscontig2", sscontig2, NULL, - "Cntg hslab, col IO, cntg dsets", PARATESTFILE); + "Cntg hslab, col IO, cntg dsets", PARATESTFILE); AddTest("sscontig3", sscontig3, NULL, - "Cntg hslab, ind IO, chnk dsets", PARATESTFILE); + "Cntg hslab, ind IO, chnk dsets", PARATESTFILE); AddTest("sscontig4", sscontig4, NULL, - "Cntg hslab, col IO, chnk dsets", PARATESTFILE); + "Cntg hslab, col IO, chnk dsets", PARATESTFILE); /* Shape Same tests using checker board hyperslab */ AddTest("sschecker1", sschecker1, NULL, - "Check hslab, ind IO, cntg dsets", PARATESTFILE); + "Check hslab, ind IO, cntg dsets", PARATESTFILE); AddTest("sschecker2", sschecker2, NULL, - "Check hslab, col IO, cntg dsets", PARATESTFILE); + "Check hslab, col IO, cntg dsets", PARATESTFILE); AddTest("sschecker3", sschecker3, NULL, - "Check hslab, ind IO, chnk dsets", PARATESTFILE); + "Check hslab, ind IO, chnk dsets", PARATESTFILE); AddTest("sschecker4", sschecker4, NULL, - "Check hslab, col IO, chnk dsets", PARATESTFILE); + "Check hslab, col IO, chnk dsets", PARATESTFILE); /* Display testing information */ TestInfo(argv[0]); @@ -5102,9 +5102,9 @@ int main(int argc, char **argv) TestParseCmdLine(argc, argv); if (dxfer_coll_type == DXFER_INDEPENDENT_IO && MAINPROCESS){ - printf("===================================\n" - " Using Independent I/O with file set view to replace collective I/O \n" - "===================================\n"); + printf("===================================\n" + " Using Independent I/O with file set view to replace collective I/O \n" + "===================================\n"); } @@ -5129,16 +5129,16 @@ int main(int argc, char **argv) { int temp; MPI_Allreduce(&nerrors, &temp, 1, MPI_INT, MPI_MAX, MPI_COMM_WORLD); - nerrors=temp; + nerrors=temp; } - if (MAINPROCESS){ /* only process 0 reports */ - printf("===================================\n"); - if (nerrors) - printf("***Shape Same tests detected %d errors***\n", nerrors); - else - printf("Shape Same tests finished with no errors\n"); - printf("===================================\n"); + if (MAINPROCESS){ /* only process 0 reports */ + printf("===================================\n"); + if (nerrors) + printf("***Shape Same tests detected %d errors***\n", nerrors); + else + printf("Shape Same tests finished with no errors\n"); + printf("===================================\n"); } /* close HDF5 library */ diff --git a/testpar/t_span_tree.c b/testpar/t_span_tree.c index 811598e..3c836ad 100644 --- a/testpar/t_span_tree.c +++ b/testpar/t_span_tree.c @@ -23,12 +23,12 @@ 2) We will read two datasets with the same hyperslab selection settings, 1. independent read to read independent output, independent read to read collecive output, - Compare the result, - If the result is the same, then collective write succeeds. + Compare the result, + If the result is the same, then collective write succeeds. 2. collective read to read independent output, independent read to read independent output, - Compare the result, - If the result is the same, then collective read succeeds. + Compare the result, + If the result is the same, then collective read succeeds. */ @@ -40,17 +40,17 @@ static void coll_read_test(int chunk_factor); /*------------------------------------------------------------------------- - * Function: coll_irregular_cont_write + * Function: coll_irregular_cont_write * - * Purpose: Wrapper to test the collectively irregular hyperslab write in + * Purpose: Wrapper to test the collectively irregular hyperslab write in contiguous storage * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -67,17 +67,17 @@ coll_irregular_cont_write(void) /*------------------------------------------------------------------------- - * Function: coll_irregular_cont_read + * Function: coll_irregular_cont_read * - * Purpose: Wrapper to test the collectively irregular hyperslab read in + * Purpose: Wrapper to test the collectively irregular hyperslab read in contiguous storage * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -93,17 +93,17 @@ coll_irregular_cont_read(void) /*------------------------------------------------------------------------- - * Function: coll_irregular_simple_chunk_write + * Function: coll_irregular_simple_chunk_write * - * Purpose: Wrapper to test the collectively irregular hyperslab write in + * Purpose: Wrapper to test the collectively irregular hyperslab write in chunk storage(1 chunk) * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -120,17 +120,17 @@ coll_irregular_simple_chunk_write(void) /*------------------------------------------------------------------------- - * Function: coll_irregular_simple_chunk_read + * Function: coll_irregular_simple_chunk_read * - * Purpose: Wrapper to test the collectively irregular hyperslab read in chunk + * Purpose: Wrapper to test the collectively irregular hyperslab read in chunk storage(1 chunk) * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -145,17 +145,17 @@ coll_irregular_simple_chunk_read(void) } /*------------------------------------------------------------------------- - * Function: coll_irregular_complex_chunk_write + * Function: coll_irregular_complex_chunk_write * - * Purpose: Wrapper to test the collectively irregular hyperslab write in chunk + * Purpose: Wrapper to test the collectively irregular hyperslab write in chunk storage(4 chunks) * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -172,17 +172,17 @@ coll_irregular_complex_chunk_write(void) /*------------------------------------------------------------------------- - * Function: coll_irregular_complex_chunk_read + * Function: coll_irregular_complex_chunk_read * - * Purpose: Wrapper to test the collectively irregular hyperslab read in chunk + * Purpose: Wrapper to test the collectively irregular hyperslab read in chunk storage(1 chunk) * - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: * @@ -198,18 +198,18 @@ coll_irregular_complex_chunk_read(void) /*------------------------------------------------------------------------- - * Function: coll_write_test + * Function: coll_write_test * - * Purpose: To test the collectively irregular hyperslab write in chunk + * Purpose: To test the collectively irregular hyperslab write in chunk storage * Input: number of chunks on each dimension if number is equal to 0, contiguous storage - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: Oct 18th, 2005 * @@ -227,14 +227,14 @@ void coll_write_test(int chunk_factor) #if 0 hsize_t mdim1[] = {MSPACE1_DIM}; /* Dimension size of the first dataset - (in memory) */ + (in memory) */ hsize_t fsdim[] = {FSPACE_DIM1, FSPACE_DIM2}; /* Dimension sizes of the dataset (on disk) */ hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the - dataset in memory when we - read selection from the - dataset on the disk */ + dataset in memory when we + read selection from the + dataset on the disk */ #endif hsize_t start[2]; /* Start of hyperslab */ @@ -250,12 +250,12 @@ void coll_write_test(int chunk_factor) #if 0 int matrix_out[MSPACE_DIM1][MSPACE_DIM2]; int matrix_out1[MSPACE_DIM1][MSPACE_DIM2]; /* Buffer to read from the - dataset */ + dataset */ int vector[MSPACE1_DIM]; #endif - int *matrix_out, *matrix_out1, *vector; + int *matrix_out = NULL, *matrix_out1 = NULL, *vector = NULL; int mpi_size,mpi_rank; @@ -614,12 +614,12 @@ void coll_write_test(int chunk_factor) */ ret = H5Dread(datasetc, H5T_NATIVE_INT, mspaceid, fspaceid, - H5P_DEFAULT, matrix_out); + H5P_DEFAULT, matrix_out); VRFY((ret >= 0),"H5D independent read succeed"); ret = H5Dread(dataseti, H5T_NATIVE_INT, mspaceid, fspaceid, - H5P_DEFAULT, matrix_out1); + H5P_DEFAULT, matrix_out1); VRFY((ret >= 0),"H5D independent read succeed"); ret = 0; @@ -662,22 +662,29 @@ void coll_write_test(int chunk_factor) ret = H5Fclose(file); VRFY((ret >= 0),""); + if (vector) + HDfree(vector); + if (matrix_out) + HDfree(matrix_out); + if (matrix_out1) + HDfree(matrix_out1); + return ; } /*------------------------------------------------------------------------- - * Function: coll_read_test + * Function: coll_read_test * - * Purpose: To test the collectively irregular hyperslab read in chunk + * Purpose: To test the collectively irregular hyperslab read in chunk storage * Input: number of chunks on each dimension if number is equal to 0, contiguous storage - * Return: Success: 0 + * Return: Success: 0 * - * Failure: -1 + * Failure: -1 * - * Programmer: Unknown - * Dec 2nd, 2004 + * Programmer: Unknown + * Dec 2nd, 2004 * * Modifications: Oct 18th, 2005 * Note: This test must be used with the correpsonding @@ -697,9 +704,9 @@ coll_read_test(int chunk_factor) /* Dimension sizes of the dataset (on disk) */ #if 0 hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the - dataset in memory when we - read selection from the - dataset on the disk */ + dataset in memory when we + read selection from the + dataset on the disk */ #endif hsize_t mdim[2]; @@ -716,7 +723,7 @@ coll_read_test(int chunk_factor) #if 0 int matrix_out[MSPACE_DIM1][MSPACE_DIM2]; int matrix_out1[MSPACE_DIM1][MSPACE_DIM2]; /* Buffer to read from the - dataset */ + dataset */ #endif int mpi_size,mpi_rank; @@ -880,7 +887,7 @@ coll_read_test(int chunk_factor) /* Collective read */ ret = H5Dread(dataseti, H5T_NATIVE_INT, mspaceid, fspaceid1, - dxfer_plist, matrix_out); + dxfer_plist, matrix_out); VRFY((ret >= 0),"H5D collecive read succeed"); ret = H5Pclose(dxfer_plist); @@ -888,7 +895,7 @@ coll_read_test(int chunk_factor) /* Independent read */ ret = H5Dread(dataseti, H5T_NATIVE_INT, mspaceid, fspaceid1, - H5P_DEFAULT, matrix_out1); + H5P_DEFAULT, matrix_out1); VRFY((ret >= 0),"H5D independent read succeed"); ret = 0; @@ -931,30 +938,30 @@ coll_read_test(int chunk_factor) /**************************************************************** ** -** lower_dim_size_comp_test__select_checker_board(): +** lower_dim_size_comp_test__select_checker_board(): ** -** Given a data space of tgt_rank, and dimensions: +** Given a data space of tgt_rank, and dimensions: ** -** (mpi_size + 1), edge_size, ... , edge_size +** (mpi_size + 1), edge_size, ... , edge_size ** -** edge_size, and a checker_edge_size, select a checker -** board selection of a sel_rank (sel_rank < tgt_rank) -** dimensional slice through the data space parallel to the +** edge_size, and a checker_edge_size, select a checker +** board selection of a sel_rank (sel_rank < tgt_rank) +** dimensional slice through the data space parallel to the ** sel_rank fastest changing indicies, with origin (in the -** higher indicies) as indicated by the start array. +** higher indicies) as indicated by the start array. ** -** Note that this function, is hard coded to presume a -** maximum data space rank of 5. +** Note that this function, is hard coded to presume a +** maximum data space rank of 5. ** -** While this maximum is declared as a constant, increasing -** it will require extensive coding in addition to changing +** While this maximum is declared as a constant, increasing +** it will require extensive coding in addition to changing ** the value of the constant. ** -** JRM -- 11/11/09 +** JRM -- 11/11/09 ** ****************************************************************/ -#define LDSCT_DS_RANK 5 +#define LDSCT_DS_RANK 5 #define LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK 0 #define LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG 0 @@ -969,32 +976,32 @@ lower_dim_size_comp_test__select_checker_board( const int sel_rank, hsize_t sel_start[]) { -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG - const char * fcnName = - "lower_dim_size_comp_test__select_checker_board():"; -#endif - hbool_t first_selection = TRUE; +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG + const char * fcnName = + "lower_dim_size_comp_test__select_checker_board():"; +#endif + hbool_t first_selection = TRUE; int i, j, k, l, m; - int ds_offset; - int sel_offset; - const int test_max_rank = LDSCT_DS_RANK; /* must update code if */ + int ds_offset; + int sel_offset; + const int test_max_rank = LDSCT_DS_RANK; /* must update code if */ /* this changes */ - hsize_t base_count; + hsize_t base_count; hsize_t offset_count; - hsize_t start[LDSCT_DS_RANK]; - hsize_t stride[LDSCT_DS_RANK]; - hsize_t count[LDSCT_DS_RANK]; - hsize_t block[LDSCT_DS_RANK]; - herr_t ret; /* Generic return value */ + hsize_t start[LDSCT_DS_RANK]; + hsize_t stride[LDSCT_DS_RANK]; + hsize_t count[LDSCT_DS_RANK]; + hsize_t block[LDSCT_DS_RANK]; + herr_t ret; /* Generic return value */ -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: dims/checker_edge_size = %d %d %d %d %d / %d\n", fcnName, mpi_rank, (int)dims[0], (int)dims[1], (int)dims[2], (int)dims[3], (int)dims[4], checker_edge_size); } -#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ +#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ HDassert( 0 < checker_edge_size ); HDassert( 0 < sel_rank ); @@ -1012,14 +1019,14 @@ lower_dim_size_comp_test__select_checker_board( HDassert( (hsize_t)checker_edge_size <= dims[sel_offset] ); HDassert( dims[sel_offset] == 10 ); -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, "%s:%d: sel_rank/sel_offset = %d/%d.\n", + HDfprintf(stdout, "%s:%d: sel_rank/sel_offset = %d/%d.\n", fcnName, mpi_rank, sel_rank, sel_offset); - HDfprintf(stdout, "%s:%d: tgt_rank/ds_offset = %d/%d.\n", + HDfprintf(stdout, "%s:%d: tgt_rank/ds_offset = %d/%d.\n", fcnName, mpi_rank, tgt_rank, ds_offset); } -#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ +#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ /* First, compute the base count (which assumes start == 0 * for the associated offset) and offset_count (which @@ -1041,25 +1048,25 @@ lower_dim_size_comp_test__select_checker_board( base_count++; } - offset_count = - (hsize_t)((dims[sel_offset] - (hsize_t)checker_edge_size) / + offset_count = + (hsize_t)((dims[sel_offset] - (hsize_t)checker_edge_size) / ((hsize_t)(checker_edge_size * 2))); - if ( ((dims[sel_rank] - (hsize_t)checker_edge_size) % + if ( ((dims[sel_rank] - (hsize_t)checker_edge_size) % ((hsize_t)(checker_edge_size * 2))) > 0 ) { offset_count++; } -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, "%s:%d: base_count/offset_count = %d/%d.\n", + HDfprintf(stdout, "%s:%d: base_count/offset_count = %d/%d.\n", fcnName, mpi_rank, base_count, offset_count); } -#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ +#endif /* LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG */ /* Now set up the stride and block arrays, and portions of the start - * and count arrays that will not be altered during the selection of + * and count arrays that will not be altered during the selection of * the checker board. */ i = 0; @@ -1091,7 +1098,7 @@ lower_dim_size_comp_test__select_checker_board( i++; } - + i = 0; do { if ( 0 >= sel_offset ) { @@ -1110,7 +1117,7 @@ lower_dim_size_comp_test__select_checker_board( } j = 0; - do { + do { if ( 1 >= sel_offset ) { if ( j == 0 ) { @@ -1179,78 +1186,78 @@ lower_dim_size_comp_test__select_checker_board( if ( ((i + j + k + l + m) % 2) == 0 ) { -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG - if ( mpi_rank == +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s%d: *** first_selection = %d ***\n", + HDfprintf(stdout, + "%s%d: *** first_selection = %d ***\n", fcnName, mpi_rank, (int)first_selection); - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: i/j/k/l/m = %d/%d/%d/%d/%d\n", fcnName, mpi_rank, i, j, k, l, m); - HDfprintf(stdout, - "%s:%d: start = %d %d %d %d %d.\n", - fcnName, mpi_rank, - (int)start[0], (int)start[1], - (int)start[2], (int)start[3], + HDfprintf(stdout, + "%s:%d: start = %d %d %d %d %d.\n", + fcnName, mpi_rank, + (int)start[0], (int)start[1], + (int)start[2], (int)start[3], (int)start[4]); - HDfprintf(stdout, - "%s:%d: stride = %d %d %d %d %d.\n", - fcnName, mpi_rank, - (int)stride[0], (int)stride[1], - (int)stride[2], (int)stride[3], + HDfprintf(stdout, + "%s:%d: stride = %d %d %d %d %d.\n", + fcnName, mpi_rank, + (int)stride[0], (int)stride[1], + (int)stride[2], (int)stride[3], (int)stride[4]); - HDfprintf(stdout, - "%s:%d: count = %d %d %d %d %d.\n", - fcnName, mpi_rank, - (int)count[0], (int)count[1], - (int)count[2], (int)count[3], + HDfprintf(stdout, + "%s:%d: count = %d %d %d %d %d.\n", + fcnName, mpi_rank, + (int)count[0], (int)count[1], + (int)count[2], (int)count[3], (int)count[4]); - HDfprintf(stdout, - "%s:%d: block = %d %d %d %d %d.\n", - fcnName, mpi_rank, - (int)block[0], (int)block[1], - (int)block[2], (int)block[3], + HDfprintf(stdout, + "%s:%d: block = %d %d %d %d %d.\n", + fcnName, mpi_rank, + (int)block[0], (int)block[1], + (int)block[2], (int)block[3], (int)block[4]); - HDfprintf(stdout, - "%s:%d: n-cube extent dims = %d.\n", + HDfprintf(stdout, + "%s:%d: n-cube extent dims = %d.\n", fcnName, mpi_rank, H5Sget_simple_extent_ndims(tgt_sid)); - HDfprintf(stdout, - "%s:%d: selection rank = %d.\n", + HDfprintf(stdout, + "%s:%d: selection rank = %d.\n", fcnName, mpi_rank, sel_rank); } #endif if ( first_selection ) { - first_selection = FALSE; + first_selection = FALSE; ret = H5Sselect_hyperslab ( - tgt_sid, + tgt_sid, H5S_SELECT_SET, - &(start[ds_offset]), - &(stride[ds_offset]), - &(count[ds_offset]), + &(start[ds_offset]), + &(stride[ds_offset]), + &(count[ds_offset]), &(block[ds_offset]) ); - + VRFY((ret != FAIL), "H5Sselect_hyperslab(SET) succeeded"); } else { ret = H5Sselect_hyperslab ( - tgt_sid, + tgt_sid, H5S_SELECT_OR, - &(start[ds_offset]), - &(stride[ds_offset]), - &(count[ds_offset]), + &(start[ds_offset]), + &(stride[ds_offset]), + &(count[ds_offset]), &(block[ds_offset]) ); - + VRFY((ret != FAIL), "H5Sselect_hyperslab(OR) succeeded"); } @@ -1282,7 +1289,7 @@ lower_dim_size_comp_test__select_checker_board( } while ( ( i <= 1 ) && ( 0 >= sel_offset ) ); -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s%d: H5Sget_select_npoints(tgt_sid) = %d.\n", fcnName, mpi_rank, (int)H5Sget_select_npoints(tgt_sid)); @@ -1304,7 +1311,7 @@ lower_dim_size_comp_test__select_checker_board( VRFY((ret != FAIL), "H5Sselect_hyperslab(AND) succeeded"); -#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s%d: H5Sget_select_npoints(tgt_sid) = %d.\n", fcnName, mpi_rank, (int)H5Sget_select_npoints(tgt_sid)); @@ -1319,57 +1326,57 @@ lower_dim_size_comp_test__select_checker_board( /**************************************************************** ** -** lower_dim_size_comp_test__verify_data(): +** lower_dim_size_comp_test__verify_data(): ** -** Examine the supplied buffer to see if it contains the -** expected data. Return TRUE if it does, and FALSE +** Examine the supplied buffer to see if it contains the +** expected data. Return TRUE if it does, and FALSE ** otherwise. ** -** The supplied buffer is presumed to this process's slice -** of the target data set. Each such slice will be an -** n-cube of rank (rank -1) and the supplied edge_size with -** origin (mpi_rank, 0, ... , 0) in the target data set. +** The supplied buffer is presumed to this process's slice +** of the target data set. Each such slice will be an +** n-cube of rank (rank -1) and the supplied edge_size with +** origin (mpi_rank, 0, ... , 0) in the target data set. ** -** Further, the buffer is presumed to be the result of reading -** or writing a checker board selection of an m (1 <= m < +** Further, the buffer is presumed to be the result of reading +** or writing a checker board selection of an m (1 <= m < ** rank) dimensional slice through this processes slice -** of the target data set. Also, this slice must be parallel -** to the fastest changing indicies. +** of the target data set. Also, this slice must be parallel +** to the fastest changing indicies. ** -** It is further presumed that the buffer was zeroed before -** the read/write, and that the full target data set (i.e. -** the buffer/data set for all processes) was initialized -** with the natural numbers listed in order from the origin -** along the fastest changing axis. +** It is further presumed that the buffer was zeroed before +** the read/write, and that the full target data set (i.e. +** the buffer/data set for all processes) was initialized +** with the natural numbers listed in order from the origin +** along the fastest changing axis. ** ** Thus for a 20x10x10 dataset, the value stored in location -** (x, y, z) (assuming that z is the fastest changing index -** and x the slowest) is assumed to be: +** (x, y, z) (assuming that z is the fastest changing index +** and x the slowest) is assumed to be: ** -** (10 * 10 * x) + (10 * y) + z +** (10 * 10 * x) + (10 * y) + z ** -** Further, supposing that this is process 10, this process's -** slice of the dataset would be a 10 x 10 2-cube with origin -** (10, 0, 0) in the data set, and would be initialize (prior -** to the checkerboard selection) as follows: +** Further, supposing that this is process 10, this process's +** slice of the dataset would be a 10 x 10 2-cube with origin +** (10, 0, 0) in the data set, and would be initialize (prior +** to the checkerboard selection) as follows: ** -** 1000, 1001, 1002, ... 1008, 1009 -** 1010, 1011, 1012, ... 1018, 1019 -** . . . . . -** . . . . . -** . . . . . -** 1090, 1091, 1092, ... 1098, 1099 +** 1000, 1001, 1002, ... 1008, 1009 +** 1010, 1011, 1012, ... 1018, 1019 +** . . . . . +** . . . . . +** . . . . . +** 1090, 1091, 1092, ... 1098, 1099 ** -** In the case of a read from the processors slice of another -** data set of different rank, the values expected will have -** to be adjusted accordingly. This is done via the -** first_expected_val parameter. +** In the case of a read from the processors slice of another +** data set of different rank, the values expected will have +** to be adjusted accordingly. This is done via the +** first_expected_val parameter. ** -** Finally, the function presumes that the first element -** of the buffer resides either at the origin of either -** a selected or an unselected checker. (Translation: -** if partial checkers appear in the buffer, they will -** intersect the edges of the n-cube oposite the origin.) +** Finally, the function presumes that the first element +** of the buffer resides either at the origin of either +** a selected or an unselected checker. (Translation: +** if partial checkers appear in the buffer, they will +** intersect the edges of the n-cube oposite the origin.) ** ****************************************************************/ @@ -1377,7 +1384,7 @@ lower_dim_size_comp_test__select_checker_board( static hbool_t lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, -#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG const int mpi_rank, #endif /* LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG */ const int rank, @@ -1387,8 +1394,8 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, hbool_t buf_starts_in_checker) { #if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG - const char * fcnName = - "lower_dim_size_comp_test__verify_data():"; + const char * fcnName = + "lower_dim_size_comp_test__verify_data():"; #endif hbool_t good_data = TRUE; hbool_t in_checker; @@ -1407,16 +1414,16 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, HDassert( checker_edge_size <= edge_size ); HDassert( test_max_rank <= LDSCT_DS_RANK ); -#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s mpi_rank = %d.\n", fcnName, mpi_rank); HDfprintf(stdout, "%s rank = %d.\n", fcnName, rank); HDfprintf(stdout, "%s edge_size = %d.\n", fcnName, edge_size); - HDfprintf(stdout, "%s checker_edge_size = %d.\n", + HDfprintf(stdout, "%s checker_edge_size = %d.\n", fcnName, checker_edge_size); - HDfprintf(stdout, "%s first_expected_val = %d.\n", + HDfprintf(stdout, "%s first_expected_val = %d.\n", fcnName, (int)first_expected_val); - HDfprintf(stdout, "%s starts_in_checker = %d.\n", + HDfprintf(stdout, "%s starts_in_checker = %d.\n", fcnName, (int)buf_starts_in_checker); } #endif @@ -1461,7 +1468,7 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, y = 0; start_in_checker[3] = start_in_checker[2]; do - { + { if ( y >= checker_edge_size ) { start_in_checker[3] = ! start_in_checker[3]; @@ -1470,8 +1477,8 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, m = 0; z = 0; -#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG - if ( mpi_rank == +#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%d, %d, %d, %d, %d:", i, j, k, l, m); } @@ -1479,8 +1486,8 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, in_checker = start_in_checker[3]; do { -#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG - if ( mpi_rank == +#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, " %d", (int)(*val_ptr)); } @@ -1490,21 +1497,21 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, in_checker = ! in_checker; z = 0; } - + if ( in_checker ) { - + if ( *val_ptr != expected_value ) { good_data = FALSE; } - + /* zero out buffer for re-use */ *val_ptr = 0; } else if ( *val_ptr != 0 ) { good_data = FALSE; - + /* zero out buffer for re-use */ *val_ptr = 0; @@ -1514,11 +1521,11 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, expected_value++; m++; z++; - + } while ( ( rank >= (test_max_rank - 4) ) && ( m < edge_size ) ); -#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG - if ( mpi_rank == +#if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "\n"); } @@ -1546,22 +1553,22 @@ lower_dim_size_comp_test__verify_data(uint32_t * buf_ptr, /*------------------------------------------------------------------------- - * Function: lower_dim_size_comp_test__run_test() + * Function: lower_dim_size_comp_test__run_test() * - * Purpose: Verify that a bug in the computation of the size of the - * lower dimensions of a data space in H5S_obtain_datatype() - * has been corrected. + * Purpose: Verify that a bug in the computation of the size of the + * lower dimensions of a data space in H5S_obtain_datatype() + * has been corrected. * - * Return: void + * Return: void * - * Programmer: JRM -- 11/11/09 + * Programmer: JRM -- 11/11/09 * * Modifications: * *------------------------------------------------------------------------- */ -#define LDSCT_DS_RANK 5 +#define LDSCT_DS_RANK 5 #define LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG 0 static void @@ -1569,21 +1576,21 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, const hbool_t use_collective_io, const hid_t dset_type) { -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG const char *fcnName = "lower_dim_size_comp_test__run_test()"; - int rank; - hsize_t dims[32]; - hsize_t max_dims[32]; + int rank; + hsize_t dims[32]; + hsize_t max_dims[32]; #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ const char *filename; - hbool_t data_ok = FALSE; - hbool_t mis_match = FALSE; + hbool_t data_ok = FALSE; + hbool_t mis_match = FALSE; int i; int start_index; int stop_index; - int mrc; - int mpi_rank; - int mpi_size; + int mrc; + int mpi_rank; + int mpi_size; MPI_Comm mpi_comm = MPI_COMM_NULL; MPI_Info mpi_info = MPI_INFO_NULL; hid_t fid; /* HDF5 file ID */ @@ -1633,7 +1640,7 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, mpi_comm = MPI_COMM_WORLD; mpi_info = MPI_INFO_NULL; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: chunk_edge_size = %d.\n", fcnName, mpi_rank, (int)chunk_edge_size); @@ -1648,13 +1655,13 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, large_ds_size = (size_t)((mpi_size + 1) * 10 * 10 * 10 * 10); large_ds_slice_size = (size_t) (10 * 10 * 10 * 10); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: small ds size / slice size = %d / %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)small_ds_size, (int)small_ds_slice_size); HDfprintf(stdout, "%s:%d: large ds size / slice size = %d / %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)large_ds_size, (int)large_ds_slice_size); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ @@ -1737,7 +1744,7 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, large_dims[3] = 10; large_dims[4] = 10; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: small_dims[] = %d %d %d %d %d\n", fcnName, mpi_rank, (int)small_dims[0], (int)small_dims[1], @@ -1746,41 +1753,41 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, fcnName, mpi_rank, (int)large_dims[0], (int)large_dims[1], (int)large_dims[2], (int)large_dims[3], (int)large_dims[4]); } -#endif +#endif /* create data spaces */ full_mem_small_ds_sid = H5Screate_simple(5, small_dims, NULL); - VRFY((full_mem_small_ds_sid != 0), + VRFY((full_mem_small_ds_sid != 0), "H5Screate_simple() full_mem_small_ds_sid succeeded"); full_file_small_ds_sid = H5Screate_simple(5, small_dims, NULL); - VRFY((full_file_small_ds_sid != 0), + VRFY((full_file_small_ds_sid != 0), "H5Screate_simple() full_file_small_ds_sid succeeded"); mem_small_ds_sid = H5Screate_simple(5, small_dims, NULL); - VRFY((mem_small_ds_sid != 0), + VRFY((mem_small_ds_sid != 0), "H5Screate_simple() mem_small_ds_sid succeeded"); file_small_ds_sid = H5Screate_simple(5, small_dims, NULL); - VRFY((file_small_ds_sid != 0), + VRFY((file_small_ds_sid != 0), "H5Screate_simple() file_small_ds_sid succeeded"); full_mem_large_ds_sid = H5Screate_simple(5, large_dims, NULL); - VRFY((full_mem_large_ds_sid != 0), + VRFY((full_mem_large_ds_sid != 0), "H5Screate_simple() full_mem_large_ds_sid succeeded"); full_file_large_ds_sid = H5Screate_simple(5, large_dims, NULL); - VRFY((full_file_large_ds_sid != 0), + VRFY((full_file_large_ds_sid != 0), "H5Screate_simple() full_file_large_ds_sid succeeded"); mem_large_ds_sid = H5Screate_simple(5, large_dims, NULL); - VRFY((mem_large_ds_sid != 0), + VRFY((mem_large_ds_sid != 0), "H5Screate_simple() mem_large_ds_sid succeeded"); file_large_ds_sid = H5Screate_simple(5, large_dims, NULL); - VRFY((file_large_ds_sid != 0), + VRFY((file_large_ds_sid != 0), "H5Screate_simple() file_large_ds_sid succeeded"); @@ -1810,14 +1817,14 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, small_chunk_dims[1] = small_chunk_dims[2] = (hsize_t)1; small_chunk_dims[3] = small_chunk_dims[4] = (hsize_t)chunk_edge_size; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: small chunk dims[] = %d %d %d %d %d\n", - fcnName, mpi_rank, (int)small_chunk_dims[0], - (int)small_chunk_dims[1], (int)small_chunk_dims[2], + fcnName, mpi_rank, (int)small_chunk_dims[0], + (int)small_chunk_dims[1], (int)small_chunk_dims[2], (int)small_chunk_dims[3], (int)small_chunk_dims[4]); } -#endif +#endif small_ds_dcpl_id = H5Pcreate(H5P_DATASET_CREATE); VRFY((ret != FAIL), "H5Pcreate() small_ds_dcpl_id succeeded"); @@ -1829,18 +1836,18 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, VRFY((ret != FAIL), "H5Pset_chunk() small_ds_dcpl_id succeeded"); large_chunk_dims[0] = (hsize_t)(1); - large_chunk_dims[1] = large_chunk_dims[2] = - large_chunk_dims[3] = large_chunk_dims[4] = (hsize_t)chunk_edge_size; + large_chunk_dims[1] = large_chunk_dims[2] = + large_chunk_dims[3] = large_chunk_dims[4] = (hsize_t)chunk_edge_size; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: large chunk dims[] = %d %d %d %d %d\n", - fcnName, mpi_rank, (int)large_chunk_dims[0], - (int)large_chunk_dims[1], (int)large_chunk_dims[2], + fcnName, mpi_rank, (int)large_chunk_dims[0], + (int)large_chunk_dims[1], (int)large_chunk_dims[2], (int)large_chunk_dims[3], (int)large_chunk_dims[4]); } -#endif +#endif large_ds_dcpl_id = H5Pcreate(H5P_DATASET_CREATE); VRFY((ret != FAIL), "H5Pcreate() large_ds_dcpl_id succeeded"); @@ -1866,11 +1873,11 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, large_ds_dcpl_id, H5P_DEFAULT); VRFY((ret >= 0), "H5Dcreate2() large_dataset succeeded"); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s:%d: small/large ds id = %d / %d.\n", - fcnName, mpi_rank, (int)small_dataset, + HDfprintf(stdout, + "%s:%d: small/large ds id = %d / %d.\n", + fcnName, mpi_rank, (int)small_dataset, (int)large_dataset); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ @@ -1904,10 +1911,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, block[0] = block[1] = block[2] = 1; block[3] = block[4] = 10; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s:%d: settings for small data set initialization.\n", + HDfprintf(stdout, + "%s:%d: settings for small data set initialization.\n", fcnName, mpi_rank); HDfprintf(stdout, "%s:%d: start[] = %d %d %d %d %d\n", fcnName, mpi_rank, (int)start[0], (int)start[1], @@ -1945,10 +1952,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, start[0] = 0; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s:%d: added settings for main process.\n", + HDfprintf(stdout, + "%s:%d: added settings for main process.\n", fcnName, mpi_rank); HDfprintf(stdout, "%s:%d: start[] = %d %d %d %d %d\n", fcnName, mpi_rank, (int)start[0], (int)start[1], @@ -1990,23 +1997,23 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, /* write the initial value of the small data set to file */ -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: writing init value of small ds to file.\n", fcnName, mpi_rank); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ - ret = H5Dwrite(small_dataset, - dset_type, - mem_small_ds_sid, + ret = H5Dwrite(small_dataset, + dset_type, + mem_small_ds_sid, file_small_ds_sid, - xfer_plist, + xfer_plist, small_ds_buf_0); VRFY((ret >= 0), "H5Dwrite() small_dataset initial write succeeded"); - /* read the small data set back to verify that it contains the - * expected data. Note that each process reads in the entire + /* read the small data set back to verify that it contains the + * expected data. Note that each process reads in the entire * data set and verifies it. */ ret = H5Dread(small_dataset, @@ -2059,10 +2066,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, block[0] = (hsize_t)1; block[1] = block[2] = block[3] = block[4] = (hsize_t)10; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s:%d: settings for large data set initialization.\n", + HDfprintf(stdout, + "%s:%d: settings for large data set initialization.\n", fcnName, mpi_rank); HDfprintf(stdout, "%s:%d: start[] = %d %d %d %d %d\n", fcnName, mpi_rank, (int)start[0], (int)start[1], @@ -2095,15 +2102,15 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, block); VRFY((ret >= 0), "H5Sselect_hyperslab(file_large_ds_sid, set) suceeded"); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, + HDfprintf(stdout, "%s%d: H5Sget_select_npoints(mem_large_ds_sid) = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)H5Sget_select_npoints(mem_large_ds_sid)); - HDfprintf(stdout, + HDfprintf(stdout, "%s%d: H5Sget_select_npoints(file_large_ds_sid) = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)H5Sget_select_npoints(file_large_ds_sid)); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ @@ -2112,10 +2119,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, start[0] = (hsize_t)0; -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, - "%s:%d: added settings for main process.\n", + HDfprintf(stdout, + "%s:%d: added settings for main process.\n", fcnName, mpi_rank); HDfprintf(stdout, "%s:%d: start[] = %d %d %d %d %d\n", fcnName, mpi_rank, (int)start[0], (int)start[1], @@ -2148,15 +2155,15 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, block); VRFY((ret>= 0), "H5Sselect_hyperslab(file_large_ds_sid, or) suceeded"); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, + HDfprintf(stdout, "%s%d: H5Sget_select_npoints(mem_large_ds_sid) = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)H5Sget_select_npoints(mem_large_ds_sid)); - HDfprintf(stdout, + HDfprintf(stdout, "%s%d: H5Sget_select_npoints(file_large_ds_sid) = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)H5Sget_select_npoints(file_large_ds_sid)); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ @@ -2181,19 +2188,19 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, start, stride, count, block); VRFY((ret != FAIL),"H5Sselect_hyperslab(file_large_ds_sid, and) succeeded"); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG - if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { rank = H5Sget_simple_extent_dims(mem_large_ds_sid, dims, max_dims); - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: mem_large_ds_sid dims[%d] = %d %d %d %d %d\n", - fcnName, mpi_rank, rank, (int)dims[0], (int)dims[1], + fcnName, mpi_rank, rank, (int)dims[0], (int)dims[1], (int)dims[2], (int)dims[3], (int)dims[4]); rank = H5Sget_simple_extent_dims(file_large_ds_sid, dims, max_dims); - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: file_large_ds_sid dims[%d] = %d %d %d %d %d\n", - fcnName, mpi_rank, rank, (int)dims[0], (int)dims[1], + fcnName, mpi_rank, rank, (int)dims[0], (int)dims[1], (int)dims[2], (int)dims[3], (int)dims[4]); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ @@ -2206,26 +2213,26 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, /* write the initial value of the large data set to file */ -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG - if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG + if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: writing init value of large ds to file.\n", fcnName, mpi_rank); - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: large_dataset = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)large_dataset); - HDfprintf(stdout, + HDfprintf(stdout, "%s:%d: mem_large_ds_sid = %d, file_large_ds_sid = %d.\n", - fcnName, mpi_rank, + fcnName, mpi_rank, (int)mem_large_ds_sid, (int)file_large_ds_sid); } #endif /* LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG */ - ret = H5Dwrite(large_dataset, - dset_type, - mem_large_ds_sid, + ret = H5Dwrite(large_dataset, + dset_type, + mem_large_ds_sid, file_large_ds_sid, - xfer_plist, + xfer_plist, large_ds_buf_0); if ( ret < 0 ) H5Eprint2(H5E_DEFAULT, stderr); @@ -2236,8 +2243,8 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, mrc = MPI_Barrier(MPI_COMM_WORLD); VRFY((mrc==MPI_SUCCESS), "Sync after large dataset writes"); - /* read the large data set back to verify that it contains the - * expected data. Note that each process reads in the entire + /* read the large data set back to verify that it contains the + * expected data. Note that each process reads in the entire * data set. */ ret = H5Dread(large_dataset, @@ -2276,13 +2283,13 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, /***********************************/ - /* read a checkerboard selection of the process slice of the - * small on disk data set into the process slice of the large + /* read a checkerboard selection of the process slice of the + * small on disk data set into the process slice of the large * in memory data set, and verify the data read. */ small_sel_start[0] = (hsize_t)(mpi_rank + 1); - small_sel_start[1] = small_sel_start[2] = + small_sel_start[1] = small_sel_start[2] = small_sel_start[3] = small_sel_start[4] = 0; lower_dim_size_comp_test__select_checker_board(mpi_rank, @@ -2294,9 +2301,9 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, small_sel_start); expected_value = (uint32_t) - ((small_sel_start[0] * small_dims[1] * small_dims[2] * + ((small_sel_start[0] * small_dims[1] * small_dims[2] * small_dims[3] * small_dims[4]) + - (small_sel_start[1] * small_dims[2] * small_dims[3] * + (small_sel_start[1] * small_dims[2] * small_dims[3] * small_dims[4]) + (small_sel_start[2] * small_dims[3] * small_dims[4]) + (small_sel_start[3] * small_dims[4]) + @@ -2333,7 +2340,7 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, VRFY((ret >= 0), "H5Sread() slice from small ds succeeded."); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: H5Dread() returns.\n", fcnName, mpi_rank); } @@ -2343,9 +2350,9 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, data_ok = TRUE; - start_index = (int)((large_sel_start[0] * large_dims[1] * large_dims[2] * + start_index = (int)((large_sel_start[0] * large_dims[1] * large_dims[2] * large_dims[3] * large_dims[4]) + - (large_sel_start[1] * large_dims[2] * large_dims[3] * + (large_sel_start[1] * large_dims[2] * large_dims[3] * large_dims[4]) + (large_sel_start[2] * large_dims[3] * large_dims[4]) + (large_sel_start[3] * large_dims[4]) + @@ -2407,13 +2414,13 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, - /* read a checkerboard selection of a slice of the process slice of - * the large on disk data set into the process slice of the small + /* read a checkerboard selection of a slice of the process slice of + * the large on disk data set into the process slice of the small * in memory data set, and verify the data read. */ small_sel_start[0] = (hsize_t)(mpi_rank + 1); - small_sel_start[1] = small_sel_start[2] = + small_sel_start[1] = small_sel_start[2] = small_sel_start[3] = small_sel_start[4] = 0; lower_dim_size_comp_test__select_checker_board(mpi_rank, @@ -2454,7 +2461,7 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, VRFY((ret >= 0), "H5Sread() slice from large ds succeeded."); -#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG +#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { HDfprintf(stdout, "%s:%d: H5Dread() returns.\n", fcnName, mpi_rank); } @@ -2465,9 +2472,9 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, data_ok = TRUE; expected_value = (uint32_t) - ((large_sel_start[0] * large_dims[1] * large_dims[2] * + ((large_sel_start[0] * large_dims[1] * large_dims[2] * large_dims[3] * large_dims[4]) + - (large_sel_start[1] * large_dims[2] * large_dims[3] * + (large_sel_start[1] * large_dims[2] * large_dims[3] * large_dims[4]) + (large_sel_start[2] * large_dims[3] * large_dims[4]) + (large_sel_start[3] * large_dims[4]) + @@ -2520,7 +2527,7 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, #if LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) { - HDfprintf(stdout, "%s:%d: unexpected value at index %d: %d.\n", + HDfprintf(stdout, "%s:%d: unexpected value at index %d: %d.\n", fcnName, mpi_rank, (int)i, (int)(*ptr_1)); } #endif /* LOWER_DIM_SIZE_COMP_TEST__VERIFY_DATA__DEBUG */ @@ -2588,15 +2595,15 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size, /*------------------------------------------------------------------------- - * Function: lower_dim_size_comp_test() + * Function: lower_dim_size_comp_test() * - * Purpose: Test to see if an error in the computation of the size - * of the lower dimensions in H5S_obtain_datatype() has - * been corrected. + * Purpose: Test to see if an error in the computation of the size + * of the lower dimensions in H5S_obtain_datatype() has + * been corrected. * - * Return: void + * Return: void * - * Programmer: JRM -- 11/11/09 + * Programmer: JRM -- 11/11/09 * * Modifications: * @@ -2607,15 +2614,15 @@ void lower_dim_size_comp_test(void) { /* const char *fcnName = "lower_dim_size_comp_test()"; */ - int chunk_edge_size = 0; - int use_collective_io = 1; - hid_t dset_type = H5T_NATIVE_UINT; + int chunk_edge_size = 0; + int use_collective_io = 1; + hid_t dset_type = H5T_NATIVE_UINT; #if 0 HDsleep(60); #endif HDcompile_assert(sizeof(uint32_t) == sizeof(unsigned)); - for ( use_collective_io = (hbool_t)0; - (int)use_collective_io <= 1; + for ( use_collective_io = (hbool_t)0; + (int)use_collective_io <= 1; (hbool_t)(use_collective_io++) ) { chunk_edge_size = 0; @@ -2636,37 +2643,37 @@ lower_dim_size_comp_test(void) /*------------------------------------------------------------------------- - * Function: link_chunk_collective_io_test() + * Function: link_chunk_collective_io_test() * - * Purpose: Test to verify that an error in MPI type management in - * H5D_link_chunk_collective_io() has been corrected. - * In this bug, we used to free MPI types regardless of - * whether they were basic or derived. + * Purpose: Test to verify that an error in MPI type management in + * H5D_link_chunk_collective_io() has been corrected. + * In this bug, we used to free MPI types regardless of + * whether they were basic or derived. * - * This test is based on a bug report kindly provided by - * Rob Latham of the MPICH team and ANL. + * This test is based on a bug report kindly provided by + * Rob Latham of the MPICH team and ANL. * - * The basic thrust of the test is to cause a process - * to participate in a collective I/O in which it: + * The basic thrust of the test is to cause a process + * to participate in a collective I/O in which it: * - * 1) Reads or writes exactly one chunk, + * 1) Reads or writes exactly one chunk, * - * 2) Has no in memory buffer for any other chunk. + * 2) Has no in memory buffer for any other chunk. * - * The test differers from Rob Latham's bug report in - * that is runs with an arbitrary number of proceeses, - * and uses a 1 dimensional dataset. + * The test differers from Rob Latham's bug report in + * that is runs with an arbitrary number of proceeses, + * and uses a 1 dimensional dataset. * - * Return: void + * Return: void * - * Programmer: JRM -- 12/16/09 + * Programmer: JRM -- 12/16/09 * * Modifications: * *------------------------------------------------------------------------- */ -#define LINK_CHUNK_COLLECTIVE_IO_TEST_CHUNK_SIZE 16 +#define LINK_CHUNK_COLLECTIVE_IO_TEST_CHUNK_SIZE 16 void link_chunk_collective_io_test(void) @@ -2674,8 +2681,8 @@ link_chunk_collective_io_test(void) /* const char *fcnName = "link_chunk_collective_io_test()"; */ const char *filename; hbool_t mis_match = FALSE; - int i; - int mrc; + int i; + int mrc; int mpi_rank; int mpi_size; MPI_Comm mpi_comm = MPI_COMM_WORLD; @@ -2765,8 +2772,8 @@ link_chunk_collective_io_test(void) for ( i = 0; i < LINK_CHUNK_COLLECTIVE_IO_TEST_CHUNK_SIZE; i++ ) { local_data_written[i] = expected_value; - local_data_read[i] = 0.0; - expected_value += 1.0; + local_data_read[i] = 0.0; + expected_value += 1.0; } /* select the file and mem spaces */ @@ -2792,15 +2799,15 @@ link_chunk_collective_io_test(void) VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); /* write the data set */ - ret = H5Dwrite(dset_id, - H5T_NATIVE_DOUBLE, - write_mem_ds_sid, + ret = H5Dwrite(dset_id, + H5T_NATIVE_DOUBLE, + write_mem_ds_sid, file_ds_sid, - xfer_plist, + xfer_plist, local_data_written); VRFY((ret >= 0), "H5Dwrite() dataset initial write succeeded"); - + /* sync with the other processes before checking data */ mrc = MPI_Barrier(MPI_COMM_WORLD); VRFY((mrc==MPI_SUCCESS), "Sync after dataset write"); @@ -2828,7 +2835,7 @@ link_chunk_collective_io_test(void) if ( diff >= 0.001 ) { mis_match = TRUE; - } + } } VRFY( (mis_match == FALSE), "dataset data good."); diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt index e02d3eb..5576f5c 100644 --- a/tools/CMakeLists.txt +++ b/tools/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS) #----------------------------------------------------------------------------- diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index addaf2e..db06b9a 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_LIB) #----------------------------------------------------------------------------- diff --git a/tools/src/CMakeLists.txt b/tools/src/CMakeLists.txt index 5a25f76..9364658 100644 --- a/tools/src/CMakeLists.txt +++ b/tools/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC) #----------------------------------------------------------------------------- diff --git a/tools/src/h5copy/CMakeLists.txt b/tools/src/h5copy/CMakeLists.txt index 606516f..8423e5a 100644 --- a/tools/src/h5copy/CMakeLists.txt +++ b/tools/src/h5copy/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5COPY) #----------------------------------------------------------------------------- diff --git a/tools/src/h5diff/CMakeLists.txt b/tools/src/h5diff/CMakeLists.txt index 2ff5817..9e9f1ea 100644 --- a/tools/src/h5diff/CMakeLists.txt +++ b/tools/src/h5diff/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5DIFF) #----------------------------------------------------------------------------- diff --git a/tools/src/h5dump/CMakeLists.txt b/tools/src/h5dump/CMakeLists.txt index 491ec4b..1133218 100644 --- a/tools/src/h5dump/CMakeLists.txt +++ b/tools/src/h5dump/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5DUMP) #----------------------------------------------------------------------------- diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index 787f1bb..25e4858 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -191,7 +191,7 @@ static struct long_options l_opts[] = { { NULL, 0, '\0' } }; - + /*------------------------------------------------------------------------- * Function: leave * @@ -214,7 +214,7 @@ leave(int ret) HDexit(ret); } - + /*------------------------------------------------------------------------- * Function: usage * @@ -366,7 +366,7 @@ usage(const char *prog) PRINTVALSTREAM(rawoutstream, "\n"); } - + /*------------------------------------------------------------------------- * Function: table_list_add * @@ -419,7 +419,7 @@ table_list_add(hid_t oid, unsigned long file_no) return((ssize_t) idx); } /* end table_list_add() */ - + /*------------------------------------------------------------------------- * Function: table_list_visited * @@ -449,7 +449,7 @@ table_list_visited(unsigned long file_no) return(-1); } /* end table_list_visited() */ - + /*------------------------------------------------------------------------- * Function: table_list_free * @@ -817,7 +817,7 @@ parse_mask_list(const char *h_list) } } - + /*------------------------------------------------------------------------- * Function: free_handler * @@ -865,7 +865,7 @@ free_handler(struct handler_t *hand, int len) } } - + /*------------------------------------------------------------------------- * Function: parse_command_line * @@ -1309,7 +1309,7 @@ error: return hand; } - + /*------------------------------------------------------------------------- * Function: main * @@ -1767,7 +1767,7 @@ h5_fileaccess(void) return fapl; } - + /*------------------------------------------------------------------------- * Function: init_prefix * @@ -1788,7 +1788,7 @@ init_prefix(char **prfx, size_t prfx_len) error_msg("unable to allocate prefix buffer\n"); } - + /*------------------------------------------------------------------------- * Function: add_prefix * diff --git a/tools/src/h5format_convert/CMakeLists.txt b/tools/src/h5format_convert/CMakeLists.txt index 712dd87..4acc999 100644 --- a/tools/src/h5format_convert/CMakeLists.txt +++ b/tools/src/h5format_convert/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5FC) #----------------------------------------------------------------------------- diff --git a/tools/src/h5import/CMakeLists.txt b/tools/src/h5import/CMakeLists.txt index efb0ad2..d628c9b 100644 --- a/tools/src/h5import/CMakeLists.txt +++ b/tools/src/h5import/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5IMPORT) #----------------------------------------------------------------------------- diff --git a/tools/src/h5jam/CMakeLists.txt b/tools/src/h5jam/CMakeLists.txt index 9035ed9..59caf44 100644 --- a/tools/src/h5jam/CMakeLists.txt +++ b/tools/src/h5jam/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5JAM) #----------------------------------------------------------------------------- diff --git a/tools/src/h5ls/CMakeLists.txt b/tools/src/h5ls/CMakeLists.txt index 71b3d1d..e9ecd44 100644 --- a/tools/src/h5ls/CMakeLists.txt +++ b/tools/src/h5ls/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5LS) #----------------------------------------------------------------------------- diff --git a/tools/src/h5repack/CMakeLists.txt b/tools/src/h5repack/CMakeLists.txt index 3fefd24..211c947 100644 --- a/tools/src/h5repack/CMakeLists.txt +++ b/tools/src/h5repack/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5REPACK) #----------------------------------------------------------------------------- diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c index c98575c..e7f4aae 100644 --- a/tools/src/h5repack/h5repack.c +++ b/tools/src/h5repack/h5repack.c @@ -75,6 +75,8 @@ h5repack_init(pack_opt_t *options, int verbose, hbool_t latest) options->verbose = verbose; options->latest = latest; options->layout_g = H5D_LAYOUT_ERROR; + options->low_bound = H5F_LIBVER_EARLIEST; + options->high_bound = H5F_LIBVER_LATEST; for (n = 0; n < H5_REPACK_MAX_NFILTERS; n++) { options->filter_g[n].filtn = -1; diff --git a/tools/src/h5repack/h5repack.h b/tools/src/h5repack/h5repack.h index 0252768..a0e0387 100644 --- a/tools/src/h5repack/h5repack.h +++ b/tools/src/h5repack/h5repack.h @@ -101,21 +101,23 @@ typedef struct { /* all the above, ready to go to the hrepack call */ typedef struct { - pack_opttbl_t *op_tbl; /*table with all -c and -f options */ - int all_layout; /*apply the layout to all objects */ - int all_filter; /*apply the filter to all objects */ + pack_opttbl_t *op_tbl; /*table with all -c and -f options */ + int all_layout; /*apply the layout to all objects */ + int all_filter; /*apply the filter to all objects */ filter_info_t filter_g[H5_REPACK_MAX_NFILTERS]; /*global filter array for the ALL case */ - int n_filter_g; /*number of global filters */ - chunk_info_t chunk_g; /*global chunk INFO for the ALL case */ - H5D_layout_t layout_g; /*global layout information for the ALL case */ - int verbose; /*verbose mode */ - hsize_t min_comp; /*minimum size to compress, in bytes */ - int use_native; /*use a native type in write */ - hbool_t latest; /*pack file with the latest file format */ - int grp_compact; /* Set the maximum number of links to store as header messages in the group */ - int grp_indexed; /* Set the minimum number of links to store in the indexed format */ - int msg_size[8]; /* Minimum size of shared messages: dataspace, - datatype, fill value, filter pipleline, attribute */ + int n_filter_g; /*number of global filters */ + chunk_info_t chunk_g; /*global chunk INFO for the ALL case */ + H5D_layout_t layout_g; /*global layout information for the ALL case */ + int verbose; /*verbose mode */ + hsize_t min_comp; /*minimum size to compress, in bytes */ + int use_native; /*use a native type in write */ + hbool_t latest; /*pack file with the latest file format */ + H5F_libver_t low_bound; /* The file's low bound as in H5Fset_libver_bounds() */ + H5F_libver_t high_bound; /* The file's high bound as in H5Fset_libver_bounds() */ + int grp_compact; /* Set the maximum number of links to store as header messages in the group */ + int grp_indexed; /* Set the minimum number of links to store in the indexed format */ + int msg_size[8]; /* Minimum size of shared messages: dataspace, + datatype, fill value, filter pipleline, attribute */ const char *ublock_filename; /* user block file name */ hsize_t ublock_size; /* user block size */ hsize_t meta_block_size; /* metadata aggregation block size (for H5Pset_meta_block_size) */ diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c index e205fba..b279cf9 100644 --- a/tools/src/h5repack/h5repack_copy.c +++ b/tools/src/h5repack/h5repack_copy.c @@ -142,8 +142,18 @@ int copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed to close property list"); } + if(options->latest) + options->low_bound = options->high_bound = H5F_LIBVER_LATEST; + /* Create file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); + + /* It can be default, latest or other settings by users */ + if(H5Pset_libver_bounds(fapl, options->low_bound, options->high_bound) < 0) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_libver_bounds failed to set format version bounds"); + /* Check if we need to create a non-default file creation property list */ - if (options->latest || ub_size > 0) { + if (options->low_bound >= H5F_LIBVER_V18 || ub_size > 0) { /* Create file creation property list */ if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create a file creation property list"); @@ -152,7 +162,7 @@ int copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) if (H5Pset_userblock(fcpl, ub_size) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_userblock failed to set non-default userblock size"); - if (options->latest) { + if (options->low_bound >= H5F_LIBVER_V18) { unsigned i = 0, nindex = 0, mesg_type_flags[5], min_mesg_sizes[5]; /* Adjust group creation parameters for root group */ @@ -203,12 +213,6 @@ int copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_shared_mesg_index failed to configure the specified shared object header message index"); } /* if (nindex>0) */ - /* Create file access property list */ - if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed to create file access property list"); - - if (H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_libver_bounds failed to set property for using latest version of the format"); } /* end if */ } /* end if */ #if defined (H5REPACK_DEBUG_USER_BLOCK) diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c index 1587da4..8f0178f 100644 --- a/tools/src/h5repack/h5repack_main.c +++ b/tools/src/h5repack/h5repack_main.c @@ -31,7 +31,7 @@ const char *outfile = NULL; * Command-line options: The user can specify short or long-named * parameters. */ -static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:M:t:a:i:o:S:P:T:G:q:z:E"; +static const char *s_opts = "hVvf:l:m:e:nLj:k:c:d:s:u:b:M:t:a:i:o:S:P:T:G:q:z:E"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "version", no_arg, 'V' }, @@ -42,6 +42,8 @@ static struct long_options l_opts[] = { { "file", require_arg, 'e' }, { "native", no_arg, 'n' }, { "latest", no_arg, 'L' }, + { "low", require_arg, 'j' }, + { "high", require_arg, 'k' }, { "compact", require_arg, 'c' }, { "indexed", require_arg, 'd' }, { "ssize", require_arg, 's' }, @@ -81,7 +83,13 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " -v, --verbose Verbose mode, print object information\n"); PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n"); PRINTVALSTREAM(rawoutstream, " -n, --native Use a native HDF5 type when repacking\n"); + PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they occur\n"); PRINTVALSTREAM(rawoutstream, " -L, --latest Use latest version of file format\n"); + PRINTVALSTREAM(rawoutstream, " This option will take precedence over the -j and -k options\n"); + PRINTVALSTREAM(rawoutstream, " --low=BOUND The low bound for library release versions to use when creating\n"); + PRINTVALSTREAM(rawoutstream, " objects in the file (default is H5F_LIBVER_EARLIEST)\n"); + PRINTVALSTREAM(rawoutstream, " --high=BOUND The high bound for library release versions to use when creating\n"); + PRINTVALSTREAM(rawoutstream, " objects in the file (default is H5F_LIBVER_LATEST)\n"); PRINTVALSTREAM(rawoutstream, " -c L1, --compact=L1 Maximum number of links in header messages\n"); PRINTVALSTREAM(rawoutstream, " -d L2, --indexed=L2 Minimum number of links in the indexed format\n"); PRINTVALSTREAM(rawoutstream, " -s S[:F], --ssize=S[:F] Shared object header message minimum size\n"); @@ -114,8 +122,12 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " F - is the shared object header message type, any of <dspace|dtype|fill|\n"); PRINTVALSTREAM(rawoutstream, " pline|attr>. If F is not specified, S applies to all messages\n"); PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n"); - PRINTVALSTREAM(rawoutstream, " occur.\n"); + PRINTVALSTREAM(rawoutstream, " BOUND is an integer indicating the library release versions to use when creating\n"); + PRINTVALSTREAM(rawoutstream, " objects in the file (see H5Pset_libver_bounds()):\n"); + PRINTVALSTREAM(rawoutstream, " 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct\n"); + PRINTVALSTREAM(rawoutstream, " 1: This is H5F_LIBVER_V18 in H5F_libver_t struct\n"); + PRINTVALSTREAM(rawoutstream, " 2: This is H5F_LIBVER_V110 in H5F_libver_t struct\n"); + PRINTVALSTREAM(rawoutstream, " (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V110 for this release\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " FS_STRATEGY is a string indicating the file space strategy used:\n"); PRINTVALSTREAM(rawoutstream, " FSM_AGGR:\n"); @@ -205,6 +217,11 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " Using latest file format with maximum compact group size of 10 and\n"); PRINTVALSTREAM(rawoutstream, " and minimum shared datatype size of 20\n"); PRINTVALSTREAM(rawoutstream, "\n"); + PRINTVALSTREAM(rawoutstream, "5) h5repack --low=0 --high=1 file1 file2\n"); + PRINTVALSTREAM(rawoutstream, "\n"); + PRINTVALSTREAM(rawoutstream, " Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via H5Pset_libver_bounds() when\n"); + PRINTVALSTREAM(rawoutstream, " creating the repacked file: file2\n"); + PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, "5) h5repack -f SHUF -f GZIP=1 file1 file2\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " Add both filters SHUF and GZIP in this order to all datasets\n"); @@ -500,6 +517,22 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) options->latest = TRUE; break; + case 'j': + options->low_bound = (H5F_libver_t)HDatoi(opt_arg); + if(options->low_bound < H5F_LIBVER_EARLIEST || options->low_bound > H5F_LIBVER_LATEST) { + error_msg("in parsing low bound\n"); + goto done; + } + break; + + case 'k': + options->high_bound = (H5F_libver_t)HDatoi(opt_arg); + if(options->high_bound < H5F_LIBVER_EARLIEST || options->high_bound > H5F_LIBVER_LATEST) { + error_msg("in parsing high bound\n"); + goto done; + } + break; + case 'c': options->grp_compact = HDatoi( opt_arg ); if (options->grp_compact > 0) diff --git a/tools/src/h5stat/CMakeLists.txt b/tools/src/h5stat/CMakeLists.txt index cc8bee2..7842aa8 100644 --- a/tools/src/h5stat/CMakeLists.txt +++ b/tools/src/h5stat/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_H5STAT) #----------------------------------------------------------------------------- diff --git a/tools/src/misc/CMakeLists.txt b/tools/src/misc/CMakeLists.txt index 78ba238..948c6d4 100644 --- a/tools/src/misc/CMakeLists.txt +++ b/tools/src/misc/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_SRC_MISC) #----------------------------------------------------------------------------- diff --git a/tools/test/CMakeLists.txt b/tools/test/CMakeLists.txt index 54dd5a2..f194d7a 100644 --- a/tools/test/CMakeLists.txt +++ b/tools/test/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST) #----------------------------------------------------------------------------- diff --git a/tools/test/h5copy/CMakeLists.txt b/tools/test/h5copy/CMakeLists.txt index 2f5f314..1f817fb 100644 --- a/tools/test/h5copy/CMakeLists.txt +++ b/tools/test/h5copy/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5COPY) #----------------------------------------------------------------------------- diff --git a/tools/test/h5diff/CMakeLists.txt b/tools/test/h5diff/CMakeLists.txt index cedc932..aae6327 100644 --- a/tools/test/h5diff/CMakeLists.txt +++ b/tools/test/h5diff/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5DIFF) #----------------------------------------------------------------------------- diff --git a/tools/test/h5dump/CMakeLists.txt b/tools/test/h5dump/CMakeLists.txt index 1941764..6a12f5e 100644 --- a/tools/test/h5dump/CMakeLists.txt +++ b/tools/test/h5dump/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5DUMP) #----------------------------------------------------------------------------- diff --git a/tools/test/h5format_convert/CMakeLists.txt b/tools/test/h5format_convert/CMakeLists.txt index 5287ae0..a27c78a 100644 --- a/tools/test/h5format_convert/CMakeLists.txt +++ b/tools/test/h5format_convert/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5FC) #----------------------------------------------------------------------------- diff --git a/tools/test/h5import/CMakeLists.txt b/tools/test/h5import/CMakeLists.txt index 5492363..2cb212a 100644 --- a/tools/test/h5import/CMakeLists.txt +++ b/tools/test/h5import/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5IMPORT) #----------------------------------------------------------------------------- diff --git a/tools/test/h5jam/CMakeLists.txt b/tools/test/h5jam/CMakeLists.txt index 17dda3c..b623860 100644 --- a/tools/test/h5jam/CMakeLists.txt +++ b/tools/test/h5jam/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5JAM) #----------------------------------------------------------------------------- diff --git a/tools/test/h5ls/CMakeLists.txt b/tools/test/h5ls/CMakeLists.txt index e92533f..8549046 100644 --- a/tools/test/h5ls/CMakeLists.txt +++ b/tools/test/h5ls/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5LS) #----------------------------------------------------------------------------- diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index a606ac6..50eb0af 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5REPACK) #----------------------------------------------------------------------------- diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake index 13ebd17..f40c0b1 100644 --- a/tools/test/h5repack/CMakeTests.cmake +++ b/tools/test/h5repack/CMakeTests.cmake @@ -53,6 +53,7 @@ # Copy all the HDF5 files from the source directory into the test directory # -------------------------------------------------------------------- set (LIST_HDF5_TEST_FILES + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/bounds_latest_latest.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr_refs.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_deflate.h5 @@ -582,6 +583,62 @@ endif () endmacro () +# VERIFY_SUPERBLOCK + macro (ADD_H5_VERIFY_SUPERBLOCK testname testfile lowbound highbound superblock) + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_VERIFY_SUPERBLOCK-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + testfiles/out-${testname}.${testfile} + testfiles/${testfile}-${testname}-v.out + testfiles/${testfile}-${testname}-v.out.err + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_VERIFY_SUPERBLOCK-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK_VERIFY_SUPERBLOCK-${testname} + COMMAND $<TARGET_FILE:h5repack> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_VERIFY_SUPERBLOCK-${testname} PROPERTIES DEPENDS H5REPACK_VERIFY_SUPERBLOCK-${testname}-clear-objects) + add_test ( + NAME H5REPACK_VERIFY_SUPERBLOCK-${testname}_DMP + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-H;-B;out-${testname}.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${testfile}-${testname}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=SUPERBLOCK_VERSION ${superblock}" + -D "TEST_REFERENCE=SUPERBLOCK_VERSION ${superblock}" + -P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake" + ) + set_tests_properties (H5REPACK_VERIFY_SUPERBLOCK-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_SUPERBLOCK-${testname}) + endif () + endmacro () + + macro (ADD_H5_VERIFY_INVALIDBOUNDS testname resultcode lowbound highbound) + add_test ( + NAME ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + testfiles/out-${testname}.${testfile} + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname} + COMMAND $<TARGET_FILE:h5repack> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties ( + ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname} PROPERTIES + DEPENDS ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname}-clear-objects + WILL_FAIL "true" + ) + endmacro () + macro (ADD_H5_TEST_META testname testfile) # Remove any output file left over from previous test run add_test ( @@ -1371,6 +1428,18 @@ ADD_H5_VERIFY_VDS (vds_conti ${TESTTYPE} 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI) ############################################################################## +### V E R S I O N B O U N D S T E S T S +############################################################################## +# -j 0 -k 2, superblock will be 0 +ADD_H5_VERIFY_SUPERBLOCK (SB_IS_0 h5repack_layout.h5 0 2 0) +# -j 1 -k 2, superblock will be 2 +ADD_H5_VERIFY_SUPERBLOCK (SB_IS_2 h5repack_layout.h5 1 2 2) +# -j 2 -k 2, superblock will be 3 +ADD_H5_VERIFY_SUPERBLOCK (SB_IS_3 h5repack_layout.h5 2 2 3) +# -j 0 -k 1, file cannot be opened +ADD_H5_VERIFY_INVALIDBOUNDS (latest_latest_invalid bounds_latest_latest.h5 0 1) + +############################################################################## ### P L U G I N T E S T S ############################################################################## ADD_H5_UD_TEST (plugin_version_test 0 h5repack_layout.h5 -v -f UD=260,0,4,9,${H5_VERS_MAJOR},${H5_VERS_MINOR},${H5_VERS_RELEASE}) diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in index e474bc3..b0a2f99 100644 --- a/tools/test/h5repack/h5repack.sh.in +++ b/tools/test/h5repack/h5repack.sh.in @@ -82,6 +82,7 @@ test -d $TESTDIR || mkdir $TESTDIR # Comment '#' without space can be used. # -------------------------------------------------------------------- LIST_HDF5_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/bounds_latest_latest.h5 $SRC_H5REPACK_TESTFILES/h5repack_attr.h5 $SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5 $SRC_H5REPACK_TESTFILES/h5repack_deflate.h5 @@ -340,8 +341,8 @@ VERIFY_LAYOUT_DSET() fi # clean up tmp files - rm -f $outfile - rm -f $layoutfile +# rm -f $outfile +# rm -f $layoutfile } #------------------------------------------ @@ -513,6 +514,87 @@ VERIFY_LAYOUT_ALL() rm -f $layoutfile } +#-------------------------------------------------------------- +# Verifying superblock of a file with different version bounds +VERIFY_SUPERBLOCK() +{ + lowbound=$1 + highbound=$2 + superblock=$3 + infile=$4 + layoutfile=verbounds-low$lowbound-high$highbound.$4 + outfile=out-verbounds-low$lowbound-high$highbound.$infile + expectedsuperblock="SUPERBLOCK_VERSION $superblock" + + shift + shift + shift + shift + + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN -j $lowbound -k $highbound $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + + #--------------------------------- + # check the layout from a dataset + VERIFY "superblock" + ( + cd $TESTDIR + $RUNSERIAL $H5DUMP_BIN -H -B $outfile > $layoutfile + ) + $GREP "$expectedsuperblock" $TESTDIR/$layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " PASSED" + else + echo " FAILED" + nerrors="`expr $nerrors + 1`" + fi + + # clean up tmp files + rm -f $outfile + rm -f $layoutfile + +} # end of VERIFY_SUPERBLOCK + +#------------------------------------------------------------------ +# Verifying that a latest file cannot be opened with earlier bounds +VERIFY_INVALIDBOUNDS() +{ + lowbound=$1 + highbound=$2 + infile=$3 + outfile=out-verbounds-low$lowbound-high$highbound.$infile + + #-------------------------------------- + # check for failure with invalid bounds + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN -j $lowbound -k $highbound $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo " PASSED" + else + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + fi + + # clean up tmp files + rm -f $outfile + +} # end of VERIFY_INVALIDBOUNDS + # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file # TOOLTEST0() @@ -1365,6 +1447,18 @@ else VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI fi +######################################################### +# Testing version bounds +######################################################### +# -j 0 -k 2, superblock will be 0 +VERIFY_SUPERBLOCK 0 2 0 h5repack_layout.h5 -j 0 -k 2 h5repack_layout.h5 +# -j 1 -k 2, superblock will be 2 +VERIFY_SUPERBLOCK 1 2 2 h5repack_layout.h5 -j 1 -k 2 h5repack_layout.h5 +# -j 2 -k 2, superblock will be 3 +VERIFY_SUPERBLOCK 2 2 3 h5repack_layout.h5 -j 2 -k 2 h5repack_layout.h5 +# -j 0 -k 1, file cannot be opened +VERIFY_INVALIDBOUNDS 0 1 bounds_latest_latest.h5 + # Clean up temporary files/directories CLEAN_TESTFILES_AND_TESTDIR diff --git a/tools/test/h5repack/testfiles/bounds_latest_latest.h5 b/tools/test/h5repack/testfiles/bounds_latest_latest.h5 Binary files differnew file mode 100644 index 0000000..6e8bcad --- /dev/null +++ b/tools/test/h5repack/testfiles/bounds_latest_latest.h5 diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt index 1ff5b73..0eef0f5 100644 --- a/tools/test/h5repack/testfiles/h5repack-help.txt +++ b/tools/test/h5repack/testfiles/h5repack-help.txt @@ -6,7 +6,13 @@ usage: h5repack [OPTIONS] file1 file2 -v, --verbose Verbose mode, print object information -V, --version Print version number and exit -n, --native Use a native HDF5 type when repacking + --enable-error-stack Prints messages from the HDF5 error stack as they occur -L, --latest Use latest version of file format + This option will take precedence over the -j and -k options + --low=BOUND The low bound for library release versions to use when creating + objects in the file (default is H5F_LIBVER_EARLIEST) + --high=BOUND The high bound for library release versions to use when creating + objects in the file (default is H5F_LIBVER_LATEST) -c L1, --compact=L1 Maximum number of links in header messages -d L2, --indexed=L2 Minimum number of links in the indexed format -s S[:F], --ssize=S[:F] Shared object header message minimum size @@ -39,8 +45,12 @@ usage: h5repack [OPTIONS] file1 file2 F - is the shared object header message type, any of <dspace|dtype|fill| pline|attr>. If F is not specified, S applies to all messages - --enable-error-stack Prints messages from the HDF5 error stack as they - occur. + BOUND is an integer indicating the library release versions to use when creating + objects in the file (see H5Pset_libver_bounds()): + 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct + 1: This is H5F_LIBVER_V18 in H5F_libver_t struct + 2: This is H5F_LIBVER_V110 in H5F_libver_t struct + (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V110 for this release FS_STRATEGY is a string indicating the file space strategy used: FSM_AGGR: @@ -130,6 +140,11 @@ Examples of use: Using latest file format with maximum compact group size of 10 and and minimum shared datatype size of 20 +5) h5repack --low=0 --high=1 file1 file2 + + Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via H5Pset_libver_bounds() when + creating the repacked file: file2 + 5) h5repack -f SHUF -f GZIP=1 file1 file2 Add both filters SHUF and GZIP in this order to all datasets diff --git a/tools/test/h5stat/CMakeLists.txt b/tools/test/h5stat/CMakeLists.txt index 0d07753..5f645097 100644 --- a/tools/test/h5stat/CMakeLists.txt +++ b/tools/test/h5stat/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_H5STAT) #----------------------------------------------------------------------------- diff --git a/tools/test/misc/CMakeLists.txt b/tools/test/misc/CMakeLists.txt index 178767a..084751a 100644 --- a/tools/test/misc/CMakeLists.txt +++ b/tools/test/misc/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_MISC) #----------------------------------------------------------------------------- diff --git a/tools/test/misc/vds/CMakeLists.txt b/tools/test/misc/vds/CMakeLists.txt index 5b34c43..50aade4 100644 --- a/tools/test/misc/vds/CMakeLists.txt +++ b/tools/test/misc/vds/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_MISC_VDS) #----------------------------------------------------------------------------- diff --git a/tools/test/perform/CMakeLists.txt b/tools/test/perform/CMakeLists.txt index b7452e0..5104b90 100644 --- a/tools/test/perform/CMakeLists.txt +++ b/tools/test/perform/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.3.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_TEST_PERFORM ) #----------------------------------------------------------------------------- |