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| author | Pedro Vicente Nunes <pvn@hdfgroup.org> | 2009-04-18 20:55:24 (GMT) |
|---|---|---|
| committer | Pedro Vicente Nunes <pvn@hdfgroup.org> | 2009-04-18 20:55:24 (GMT) |
| commit | ceffce7203e466d3262be30e8470ccdf1826a5de (patch) | |
| tree | 8756a3d7652534806c6fa6a5402b0137c9a133d9 | |
| parent | 0ef325886ddfea7e8b1fc8c9835cf3ff96afe706 (diff) | |
| download | hdf5-ceffce7203e466d3262be30e8470ccdf1826a5de.zip hdf5-ceffce7203e466d3262be30e8470ccdf1826a5de.tar.gz hdf5-ceffce7203e466d3262be30e8470ccdf1826a5de.tar.bz2 | |
[svn-r16785] added missing test and compare cases inside compounds for nan
tested: linux
| -rw-r--r-- | tools/h5diff/h5diffgentest.c | 1040 | ||||
| -rw-r--r-- | tools/lib/h5diff_array.c | 655 |
2 files changed, 1022 insertions, 673 deletions
diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index 92e5493..b07c425 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -1,17 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +* Copyright by The HDF Group. * +* Copyright by the Board of Trustees of the University of Illinois. * +* All rights reserved. * +* * +* This file is part of HDF5. The full HDF5 copyright notice, including * +* terms governing use, modification, and redistribution, is contained in * +* the files COPYING and Copyright.html. COPYING can be found at the root * +* of the source code distribution tree; Copyright.html can be found at the * +* root level of an installed copy of the electronic HDF5 document set and * +* is linked from the top-level documents page. It can also be found at * +* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * +* access to either file, you may request a copy from help@hdfgroup.org. * +* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ #include <stdio.h> #include <stdlib.h> @@ -21,16 +21,16 @@ /*------------------------------------------------------------------------- - * Program: h5diffgentest - * - * Purpose: generate files for h5diff testing - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ +* Program: h5diffgentest +* +* Purpose: generate files for h5diff testing +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ #define FILE1 "h5diff_basic1.h5" #define FILE2 "h5diff_basic2.h5" @@ -51,27 +51,27 @@ #define MY_LINKCLASS 187 /* A UD link traversal function. Shouldn't actually be called. */ static hid_t UD_traverse(UNUSED const char * link_name, UNUSED hid_t cur_group, - UNUSED const void * udata, UNUSED size_t udata_size, UNUSED hid_t lapl_id) + UNUSED const void * udata, UNUSED size_t udata_size, UNUSED hid_t lapl_id) { -return -1; + return -1; } const H5L_class_t UD_link_class[1] = {{ H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - (H5L_type_t)MY_LINKCLASS, /* Link type id number */ - "UD link class", /* name for debugging */ - NULL, /* Creation callback */ - NULL, /* Move/rename callback */ - NULL, /* Copy callback */ - UD_traverse, /* The actual traversal function */ - NULL, /* Deletion callback */ - NULL /* Query callback */ + (H5L_type_t)MY_LINKCLASS, /* Link type id number */ + "UD link class", /* name for debugging */ + NULL, /* Creation callback */ + NULL, /* Move/rename callback */ + NULL, /* Copy callback */ + UD_traverse, /* The actual traversal function */ + NULL, /* Deletion callback */ + NULL /* Query callback */ }}; /*------------------------------------------------------------------------- - * prototypes - *------------------------------------------------------------------------- - */ +* prototypes +*------------------------------------------------------------------------- +*/ /* tests called in main() */ static int test_basic(const char *fname1, const char *fname2, const char *fname3); @@ -90,43 +90,43 @@ static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *name,hid_t /*------------------------------------------------------------------------- - * Function: main - * - * Purpose: main program - * - *------------------------------------------------------------------------- - */ +* Function: main +* +* Purpose: main program +* +*------------------------------------------------------------------------- +*/ int main(void) { test_basic(FILE1, FILE2, FILE11); - + test_types (FILE3); test_datatypes(FILE4); - + /* generate 2 files, the second call creates a similar file with differences */ test_attributes(FILE5,0); test_attributes(FILE6,1); - + /* generate 2 files, the second call creates a similar file with differences */ test_datasets(FILE7,0); test_datasets(FILE8,1); - + /* generate 2 files, the second call creates a similar file with differences */ test_hyperslab(FILE9,0); test_hyperslab(FILE10,1); return 0; - + } /*------------------------------------------------------------------------- - * Function: test_basic - * - * Purpose: Create basic test files, first two contains different data, the - * third one is just an empty file. - * - *------------------------------------------------------------------------- - */ +* Function: test_basic +* +* Purpose: Create basic test files, first two contains different data, the +* third one is just an empty file. +* +*------------------------------------------------------------------------- +*/ static int test_basic(const char *fname1, const char *fname2, const char *fname3) @@ -135,7 +135,7 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) hid_t gid1, gid2, gid3; hsize_t dims1[1] = { 6 }; hsize_t dims2[2] = { 3,2 }; - + /* create the empty file */ if ((fid1=H5Fcreate(fname3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0){ fprintf(stderr, "empty file (%s) creation failed.\n", fname3); @@ -145,12 +145,12 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) fprintf(stderr, "empty file (%s) close failed.\n", fname3); goto out; } - + /*------------------------------------------------------------------------- * create two files *------------------------------------------------------------------------- */ - + if (( fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 ) goto out; if (( fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0 ) @@ -164,7 +164,7 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) gid1 = H5Gcreate2(fid1, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); gid2 = H5Gcreate2(fid2, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); gid3 = H5Gcreate2(fid2, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * tests: * # 1.1 normal mode @@ -174,19 +174,19 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) * # 1.5 with -d *------------------------------------------------------------------------- */ - + { double data1[3][2] = {{1,1}, {1,1}, {0,0}}; double data2[3][2] = {{0,1.1},{1.01,1.001},{0,1}}; double data3[3][2] = {{100,100},{100,100},{100,100}}; double data4[3][2] = {{105,120},{160,95},{80,40}}; - + write_dset(gid1,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data1); write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_DOUBLE,data2); write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_DOUBLE,data3); write_dset(gid2,2,dims2,"dset4",H5T_NATIVE_DOUBLE,data4); write_dset(gid2,2,dims2,"dset1",H5T_NATIVE_DOUBLE,data2); - + } /*------------------------------------------------------------------------- * relative error, compare divide by zero, both zero @@ -196,12 +196,12 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) { int data5[3][2] = {{100,100},{100,0},{0,100}}; int data6[3][2] = {{120,80}, {0,100},{0,50}}; - + write_dset(gid1,2,dims2,"dset5",H5T_NATIVE_INT,data5); write_dset(gid1,2,dims2,"dset6",H5T_NATIVE_INT,data6); - + } - + /*------------------------------------------------------------------------- * relative error, compare divide by zero, both zero * # 1.6.2 with -p (unsigned long long) @@ -210,12 +210,12 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) { unsigned long long data7[3][2] = {{100,100},{100,0},{0,100}}; unsigned long long data8[3][2] = {{120,80}, {0,100},{0,50}}; - + write_dset(gid1,2,dims2,"dset7",H5T_NATIVE_ULLONG,data7); write_dset(gid1,2,dims2,"dset8",H5T_NATIVE_ULLONG,data8); - + } - + /*------------------------------------------------------------------------- * relative error, compare divide by zero, both zero * # 1.6.3 with -p (double) @@ -232,13 +232,13 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) { double data9[3][2] = {{100,100},{100,0},{0,100}}; double data10[3][2] ={{120,80}, {0,100},{0,50}}; - + write_dset(gid1,2,dims2,"dset9",H5T_NATIVE_DOUBLE,data9); write_dset(gid1,2,dims2,"dset10",H5T_NATIVE_DOUBLE,data10); - + } - - + + /*------------------------------------------------------------------------- * test floating point comparison *------------------------------------------------------------------------- @@ -249,86 +249,124 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) float data12[3][2] ={{0.00000f,0.00002f},{0.000009f,0.00001f},{0.00000f,0.00001f}}; double data13[3][2] ={{0.000000000,0.000000001},{0.000000001, 0.000000000},{0.000000001,0.000000001}}; double data14[3][2] ={{0.000000000,0.000000002},{0.0000000009,0.000000001},{0.000000000,0.000000001}}; - + write_dset(gid1,2,dims2,"fp1",H5T_NATIVE_FLOAT,data11); write_dset(gid1,2,dims2,"fp2",H5T_NATIVE_FLOAT,data12); write_dset(gid1,2,dims2,"d1",H5T_NATIVE_DOUBLE,data13); write_dset(gid1,2,dims2,"d2",H5T_NATIVE_DOUBLE,data14); - + } - - + + #if H5_SIZEOF_LONG_DOUBLE !=0 { - - /*------------------------------------------------------------------------- - * H5T_NATIVE_LDOUBLE - *------------------------------------------------------------------------- + + /*------------------------------------------------------------------------- + * H5T_NATIVE_LDOUBLE + *------------------------------------------------------------------------- */ - + long double data15[3][2] ={{1,1},{1,1},{1,1}}; - + write_dset(gid1,2,dims2,"ld",H5T_NATIVE_LDOUBLE,data15); - + } #endif - - - + + + /*------------------------------------------------------------------------- * NaNs in H5T_NATIVE_FLOAT *------------------------------------------------------------------------- */ { - + float data15[6]; float data16[6]; - + data15[0] = (float) sqrt( (double)-1 ); data15[1] = 1; data15[2] = (float) sqrt( (double)-1 ); data15[3] = 1; data15[4] = 1; data15[5] = 1; - + data16[0] = (float) sqrt( (double)-1 ); data16[1] = (float) sqrt( (double)-1 ); data16[2] = 1; data16[3] = 1; data16[4] = 1; data16[5] = 1; - + write_dset(gid1,1,dims1,"fp15",H5T_NATIVE_FLOAT,data15); write_dset(gid1,1,dims1,"fp16",H5T_NATIVE_FLOAT,data16); - + } - + /*------------------------------------------------------------------------- * NaNs in H5T_NATIVE_DOUBLE *------------------------------------------------------------------------- */ { - + double data17[6]; double data18[6]; - + data17[0] = sqrt( (double)-1 ); data17[1] = 1; data17[2] = sqrt( (double)-1 ); data17[3] = 1; data17[4] = 1; data17[5] = 1; - + data18[0] = (float) sqrt( (double)-1 ); data18[1] = (float) sqrt( (double)-1 ); data18[2] = 1; data18[3] = 1; data18[4] = 1; data18[5] = 1; - + write_dset(gid1,1,dims1,"fp17",H5T_NATIVE_DOUBLE,data17); write_dset(gid1,1,dims1,"fp18",H5T_NATIVE_DOUBLE,data18); - + + } + + /*------------------------------------------------------------------------- + * NaNs in H5T_NATIVE_DOUBLE and H5T_NATIVE_FLOAT inside H5T_COMPOUND + *------------------------------------------------------------------------- + */ + { + typedef struct cmp1_t + { + double d; + float f; + } cmp1_t; + + cmp1_t buf1[2]; + cmp1_t buf2[2]; + hsize_t dims[1] = {2}; + size_t type_size; + hid_t tid; + + buf1[0].d = sqrt( (double)-1 ); + buf1[0].f = (float) sqrt( (double)-1 ); + buf2[0].d = sqrt( (double)-1 ); + buf2[0].f = (float) sqrt( (double)-1 ); + + buf1[1].d = sqrt( (double)-1 ); + buf1[1].f = (float) sqrt( (double)-1 ); + buf2[1].d = 0; + buf2[1].f = 0; + + type_size = sizeof( cmp1_t ); + tid = H5Tcreate (H5T_COMPOUND, type_size ); + H5Tinsert(tid, "d", HOFFSET( cmp1_t, d ), H5T_NATIVE_DOUBLE ); + H5Tinsert(tid, "f", HOFFSET( cmp1_t, f ), H5T_NATIVE_FLOAT ); + write_dset(gid1,1,dims,"dset11",tid,buf1); + write_dset(gid1,1,dims,"dset12",tid,buf2); + H5Tclose(tid); + + } /* not comparable objects */ @@ -336,19 +374,19 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) typedef struct cmp1_t { - double d; - int i; + double d; + int i; } cmp1_t; typedef struct cmp2_t { - int i; - double d; + int i; + double d; } cmp2_t; typedef struct cmp3_t { - int i; + int i; } cmp3_t; double data2[6] = {0,0,0,0,0,0}; @@ -363,7 +401,7 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) size_t type_size; hid_t tid; - + write_dset(gid3,1,dims1,"dset1",H5T_NATIVE_DOUBLE,NULL); write_dset(gid3,1,dims1,"dset2",H5T_NATIVE_DOUBLE,data2); @@ -393,10 +431,10 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) H5Tinsert(tid, "i", HOFFSET( cmp2_t, i ), H5T_NATIVE_INT ); write_dset(gid3,1,dims4,"dset9",tid,NULL); H5Tclose(tid); - + } - - + + /*------------------------------------------------------------------------- * close *------------------------------------------------------------------------- @@ -407,21 +445,21 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) H5Fclose(fid1); H5Fclose(fid2); return SUCCEED; - + out: - + return FAIL; } /*------------------------------------------------------------------------- - * Function: test_types - * - * Purpose: Compare different HDF5 object & link types: - * H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK, H5G_UDLINK - * - *------------------------------------------------------------------------- - */ +* Function: test_types +* +* Purpose: Compare different HDF5 object & link types: +* H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK, H5G_UDLINK +* +*------------------------------------------------------------------------- +*/ static int test_types(const char *fname) { @@ -441,19 +479,19 @@ int test_types(const char *fname) { int a; } s2_t; - + /*------------------------------------------------------------------------- * Create one file *------------------------------------------------------------------------- */ fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * H5G_DATASET *------------------------------------------------------------------------- */ write_dset(fid1,1,dims,"dset",H5T_NATIVE_INT,0); - + /*------------------------------------------------------------------------- * H5G_GROUP *------------------------------------------------------------------------- @@ -462,12 +500,12 @@ int test_types(const char *fname) status = H5Gclose(gid1); gid2 = H5Gcreate2(fid1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Gclose(gid2); - + /*------------------------------------------------------------------------- * H5G_TYPE *------------------------------------------------------------------------- */ - + /* create and commit datatype 1 */ tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t)); H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT); @@ -479,15 +517,15 @@ int test_types(const char *fname) H5Tinsert(tid2, "a", HOFFSET(s2_t, a), H5T_NATIVE_INT); H5Tcommit2(fid1, "t2", tid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); H5Tclose(tid2); - + /*------------------------------------------------------------------------- * H5G_LINK *------------------------------------------------------------------------- */ - + status = H5Lcreate_soft("g1", fid1, "l1", H5P_DEFAULT, H5P_DEFAULT); status = H5Lcreate_soft("g2", fid1, "l2", H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * H5G_UDLINK *------------------------------------------------------------------------- @@ -495,7 +533,7 @@ int test_types(const char *fname) H5Lcreate_external("filename", "objname", fid1, "ext_link", H5P_DEFAULT, H5P_DEFAULT); H5Lregister(UD_link_class); H5Lcreate_ud(fid1, "ud_link", (H5L_type_t)MY_LINKCLASS, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * Close *------------------------------------------------------------------------- @@ -544,16 +582,16 @@ TOOLTEST h5diff_28.txt file3.h5 file3.h5 -v l1 l2 */ /*------------------------------------------------------------------------- - * Function: test_datatypes - * - * Purpose: test dataset datatypes - * - *------------------------------------------------------------------------- - */ +* Function: test_datatypes +* +* Purpose: test dataset datatypes +* +*------------------------------------------------------------------------- +*/ static int test_datatypes(const char *fname) { - + hid_t fid1; hsize_t dims[2]={3,2}; herr_t status; @@ -569,114 +607,114 @@ int test_datatypes(const char *fname) float buf5b[3][2] = {{1,1},{3,4},{5,6}}; double buf6a[3][2] = {{1,1},{1,1},{1,1}}; double buf6b[3][2] = {{1,1},{3,4},{5,6}}; - + /*unsigned/signed test signed char -128 to 127 unsigned char 0 to 255 */ char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}}; unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}}; - + /* long long test */ long long buf8a[3][2] = {{1,1},{1,1},{1,1}}; long long buf8b[3][2] = {{1,1},{3,4},{5,6}}; unsigned long long buf9a[3][2] = {{1,1},{1,1},{1,1}}; unsigned long long buf9b[3][2] = {{1,1},{3,4},{5,6}}; - + unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; - - + + /*------------------------------------------------------------------------- * Create a file *------------------------------------------------------------------------- */ fid1 = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * Check for different storage order. Give a warning if they are different *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset0a",H5T_STD_I16LE,buf2a); write_dset(fid1,2,dims,"dset0b",H5T_STD_I32LE,buf3b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_CHAR *------------------------------------------------------------------------- */ write_dset(fid1,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a); write_dset(fid1,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_SHORT *------------------------------------------------------------------------- */ write_dset(fid1,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a); write_dset(fid1,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_INT *------------------------------------------------------------------------- */ write_dset(fid1,2,dims,"dset3a",H5T_NATIVE_INT,buf3a); write_dset(fid1,2,dims,"dset3b",H5T_NATIVE_INT,buf3b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_LONG *------------------------------------------------------------------------- */ write_dset(fid1,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a); write_dset(fid1,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_FLOAT *------------------------------------------------------------------------- */ write_dset(fid1,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a); write_dset(fid1,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_DOUBLE *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a); write_dset(fid1,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a); write_dset(fid1,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_LLONG *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a); write_dset(fid1,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_ULLONG *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a); write_dset(fid1,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b); - + /*------------------------------------------------------------------------- * H5T_NATIVE_INT *------------------------------------------------------------------------- */ - + write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); - - + + /*------------------------------------------------------------------------- * Close *------------------------------------------------------------------------- @@ -719,12 +757,12 @@ TOOLTEST h5diff_58.txt file7.h5 file8.h5 -v refreg */ /*------------------------------------------------------------------------- - * Function: test_attributes - * - * Purpose: test attributes - * - *------------------------------------------------------------------------- - */ +* Function: test_attributes +* +* Purpose: test attributes +* +*------------------------------------------------------------------------- +*/ static int test_attributes(const char *file, int make_diffs /* flag to modify data buffers */) @@ -736,31 +774,31 @@ int test_attributes(const char *file, hid_t sid; hsize_t dims[1]={2}; herr_t status; - + /* Create a file */ if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - + /* Create a 1D dataset */ sid = H5Screate_simple(1, dims, NULL); did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Sclose(sid); assert(status >= 0); - + /* Create groups */ gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); root_id = H5Gopen2(fid, "/", H5P_DEFAULT); - + /*------------------------------------------------------------------------- * write a series of attributes on the dataset, group, and root group *------------------------------------------------------------------------- */ - + write_attr_in(did,"dset",fid,make_diffs); write_attr_in(gid,NULL,0,make_diffs); write_attr_in(root_id,NULL,0,make_diffs); - - + + /* Close */ status = H5Dclose(did); assert(status >= 0); @@ -768,7 +806,7 @@ int test_attributes(const char *file, assert(status >= 0); status = H5Gclose(root_id); assert(status >= 0); - + /* Close file */ status = H5Fclose(fid); assert(status >= 0); @@ -777,15 +815,15 @@ int test_attributes(const char *file, /*------------------------------------------------------------------------- - * Function: test_datasets - * - * Purpose: Check all HDF5 classes - * H5T_INTEGER, H5T_FLOAT - * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, - * H5T_ENUM, H5T_VLEN, H5T_ARRAY - * - *------------------------------------------------------------------------- - */ +* Function: test_datasets +* +* Purpose: Check all HDF5 classes +* H5T_INTEGER, H5T_FLOAT +* H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE, +* H5T_ENUM, H5T_VLEN, H5T_ARRAY +* +*------------------------------------------------------------------------- +*/ static int test_datasets(const char *file, int make_diffs /* flag to modify data buffers */) @@ -797,37 +835,37 @@ int test_datasets(const char *file, hsize_t dims[1]={2}; herr_t status; int buf[2]={1,2}; - + if(make_diffs) memset(buf, 0, sizeof buf); - + /* Create a file */ if((fid = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - + /* Create a 1D dataset */ sid = H5Screate_simple(1, dims, NULL); did = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); status = H5Sclose(sid); assert(status >= 0); - + /* Create a group */ gid = H5Gcreate2(fid, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - + /*------------------------------------------------------------------------- * write a series of datasets on the group *------------------------------------------------------------------------- */ - + write_dset_in(gid,"/dset",fid,make_diffs); - + /* close */ status = H5Dclose(did); assert(status >= 0); status = H5Gclose(gid); assert(status >= 0); - + /* close file */ status = H5Fclose(fid); assert(status >= 0); @@ -835,12 +873,12 @@ int test_datasets(const char *file, } /*------------------------------------------------------------------------- - * Function: write_attr_in - * - * Purpose: write attributes in LOC_ID (dataset, group, named datatype) - * - *------------------------------------------------------------------------- - */ +* Function: write_attr_in +* +* Purpose: write attributes in LOC_ID (dataset, group, named datatype) +* +*------------------------------------------------------------------------- +*/ static void write_attr_in(hid_t loc_id, const char* dset_name, /* for saving reference to dataset*/ @@ -853,20 +891,20 @@ void write_attr_in(hid_t loc_id, char a; double b; } s_t; - + typedef enum { RED, - GREEN + GREEN } e_t; - + hid_t aid; hid_t sid; hid_t tid; herr_t status; int val, i, j, k, l, n; float f; - + /* create 1D attributes with dimension [2], 2 elements */ hsize_t dims[1]={2}; char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ @@ -880,7 +918,7 @@ void write_attr_in(hid_t loc_id, int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ int buf7[2]= {1,2}; /* integer */ float buf8[2]= {1,2}; /* float */ - + /* create 2D attributes with dimension [3][2], 6 elements */ hsize_t dims2[2]={3,2}; char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */ @@ -893,7 +931,7 @@ void write_attr_in(hid_t loc_id, int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - + /* create 3D attributes with dimension [4][3][2], 24 elements */ hsize_t dims3[3]={4,3,2}; char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}}, @@ -909,18 +947,18 @@ void write_attr_in(hid_t loc_id, int buf63[24][3]; /* array */ int buf73[4][3][2]; /* integer */ float buf83[4][3][2]; /* float */ - - + + /*------------------------------------------------------------------------- * 1D attributes *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -947,19 +985,19 @@ void write_attr_in(hid_t loc_id, status = H5Tset_size(tid, (size_t)STR_SIZE); write_attr(loc_id,1,dims,"string",tid,buf1); status = H5Tclose(tid); - + for (i=0; i<2; i++) buf1a[i]=buf1[i]; tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid, H5T_VARIABLE); write_attr(loc_id,1,dims,"VLstring",tid,buf1a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -976,16 +1014,16 @@ void write_attr_in(hid_t loc_id, [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ - + tid = H5Tcopy(H5T_STD_B8LE); write_attr(loc_id,1,dims,"bitfield",tid,buf2); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - + /* buf2[2]= {1,2}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -997,17 +1035,17 @@ void write_attr_in(hid_t loc_id, [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ - + tid = H5Tcreate(H5T_OPAQUE, (size_t)1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_attr(loc_id,1,dims,"opaque",tid,buf2); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -1015,7 +1053,7 @@ void write_attr_in(hid_t loc_id, buf3[i].a=0; buf3[i].b=0; } } - + /* buf3[2]= {{1,2},{3,4}}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -1028,13 +1066,13 @@ void write_attr_in(hid_t loc_id, [ 1 ] 3 5 2 [ 1 ] 4 5 1 */ - + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_attr(loc_id,1,dims,"compound",tid,buf3); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -1046,7 +1084,7 @@ void write_attr_in(hid_t loc_id, status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1); write_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); } - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- @@ -1073,14 +1111,14 @@ void write_attr_in(hid_t loc_id, H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_attr(loc_id,1,dims,"enum",tid,buf45); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ - + buf5[0].len = 1; buf5[0].p = malloc( 1 * sizeof(int)); ((int *)buf5[0].p)[0]=1; @@ -1088,7 +1126,7 @@ void write_attr_in(hid_t loc_id, buf5[1].p = malloc( 2 * sizeof(int)); ((int *)buf5[1].p)[0]=2; ((int *)buf5[1].p)[1]=3; - + if (make_diffs) { ((int *)buf5[0].p)[0]=0; @@ -1104,7 +1142,7 @@ void write_attr_in(hid_t loc_id, [ 1 ] 2 0 2 [ 1 ] 3 0 3 */ - + sid = H5Screate_simple(1, dims, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT); @@ -1115,12 +1153,12 @@ void write_attr_in(hid_t loc_id, status = H5Aclose(aid); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -1146,12 +1184,12 @@ void write_attr_in(hid_t loc_id, tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_attr(loc_id, 1, dims, "array", tid, buf6); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -1176,13 +1214,13 @@ void write_attr_in(hid_t loc_id, */ write_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); write_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - + + /*------------------------------------------------------------------------- * 2D attributes *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- @@ -1194,7 +1232,7 @@ void write_attr_in(hid_t loc_id, for (k=0; k<2; k++) buf12[i][j][k]='z'; } - + /* buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -1214,17 +1252,17 @@ void write_attr_in(hid_t loc_id, [ 2 1 ] k z [ 2 1 ] l z */ - + tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid, (size_t)STR_SIZE); write_attr(loc_id,2,dims2,"string2D",tid,buf12); status = H5Tclose(tid); - + for (i=0; i<3; i++) { for (j=0; j<2; j++) { - + buf12a[i][j]=buf12[i][j]; } } @@ -1232,17 +1270,17 @@ void write_attr_in(hid_t loc_id, status = H5Tset_size(tid, H5T_VARIABLE); write_attr(loc_id,2,dims2,"VLstring2D",tid,buf12a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - + if (make_diffs) { memset(buf22,0,sizeof buf22); } - + /* buf22[3][2]= {{1,2},{3,4},{5,6}}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -1256,17 +1294,17 @@ void write_attr_in(hid_t loc_id, [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ - - + + tid = H5Tcopy(H5T_STD_B8LE); write_attr(loc_id,2,dims2,"bitfield2D",tid,buf22); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - + /* buf22[3][2]= {{1,2},{3,4},{5,6}}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -1284,7 +1322,7 @@ void write_attr_in(hid_t loc_id, status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_attr(loc_id,2,dims2,"opaque2D",tid,buf22); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- @@ -1293,7 +1331,7 @@ void write_attr_in(hid_t loc_id, { memset(buf32,0,sizeof buf32); } - + /* buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; $h5diff file7.h5 file6.h5 g1 g1 -v @@ -1307,14 +1345,14 @@ void write_attr_in(hid_t loc_id, [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ - - + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_attr(loc_id,2,dims2,"compound2D",tid,buf32); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -1329,7 +1367,7 @@ void write_attr_in(hid_t loc_id, } write_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); } - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- @@ -1341,7 +1379,7 @@ void write_attr_in(hid_t loc_id, if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; } } - + /* Attribute: <enum2D> and <enum2D> position enum2D of </g1> enum2D of </g1> difference @@ -1353,18 +1391,18 @@ void write_attr_in(hid_t loc_id, [ 2 0 ] RED GREEN [ 2 1 ] RED GREEN */ - + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_attr(loc_id,2,dims2,"enum2D",tid,buf452); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ n=0; for (i = 0; i < 3; i++) { @@ -1376,7 +1414,7 @@ void write_attr_in(hid_t loc_id, else ((int *)buf52[i][j].p)[l] = n++; } } - + /* position vlen2D of </g1> vlen2D of </g1> difference ------------------------------------------------------------ @@ -1392,7 +1430,7 @@ void write_attr_in(hid_t loc_id, [ 2 1 ] 10 0 10 [ 2 1 ] 11 0 11 */ - + sid = H5Screate_simple(2, dims2, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT); @@ -1403,12 +1441,12 @@ void write_attr_in(hid_t loc_id, status = H5Aclose(aid); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ - + if (make_diffs) { memset(buf62,0,sizeof buf62); @@ -1442,12 +1480,12 @@ void write_attr_in(hid_t loc_id, tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_attr(loc_id, 2, dims2, "array2D", tid, buf62); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ - + if (make_diffs) { memset(buf72,0,sizeof buf72); @@ -1474,21 +1512,21 @@ void write_attr_in(hid_t loc_id, [ 2 0 ] 5 0 5 [ 2 1 ] 6 0 6 */ - + write_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72); write_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - + + /*------------------------------------------------------------------------- * 3D attributes *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<4; i++) @@ -1497,69 +1535,69 @@ void write_attr_in(hid_t loc_id, for (l=0; l<2; l++) buf13[i][j][k][l]='z'; } - + /* buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", "rs","tu","vw","xz","AB","CD","EF","GH", "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; - - Attribute: <string3D> and <string3D> - position string3D of </g1> string3D of </g1> difference - ------------------------------------------------------------ - [ 0 0 0 ] a z - [ 0 0 0 ] b z - [ 0 0 1 ] c z - [ 0 0 1 ] d z - [ 0 1 0 ] e z - [ 0 1 0 ] f z - [ 0 1 1 ] g z - [ 0 1 1 ] h z - [ 0 2 0 ] i z - [ 0 2 0 ] j z - [ 0 2 1 ] k z - [ 0 2 1 ] l z - [ 1 0 0 ] m z - [ 1 0 0 ] n z - [ 1 0 1 ] p z - [ 1 0 1 ] q z - [ 1 1 0 ] r z - [ 1 1 0 ] s z - [ 1 1 1 ] t z - [ 1 1 1 ] u z - [ 1 2 0 ] v z - [ 1 2 0 ] w z - [ 1 2 1 ] x z - [ 2 0 0 ] A z - [ 2 0 0 ] B z - [ 2 0 1 ] C z - [ 2 0 1 ] D z - [ 2 1 0 ] E z - [ 2 1 0 ] F z - [ 2 1 1 ] G z - [ 2 1 1 ] H z - [ 2 2 0 ] I z - [ 2 2 0 ] J z - [ 2 2 1 ] K z - [ 2 2 1 ] L z - [ 3 0 0 ] M z - [ 3 0 0 ] N z - [ 3 0 1 ] P z - [ 3 0 1 ] Q z - [ 3 1 0 ] R z - [ 3 1 0 ] S z - [ 3 1 1 ] T z - [ 3 1 1 ] U z - [ 3 2 0 ] V z - [ 3 2 0 ] W z - [ 3 2 1 ] X z - [ 3 2 1 ] Z z - */ - + + Attribute: <string3D> and <string3D> + position string3D of </g1> string3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] a z + [ 0 0 0 ] b z + [ 0 0 1 ] c z + [ 0 0 1 ] d z + [ 0 1 0 ] e z + [ 0 1 0 ] f z + [ 0 1 1 ] g z + [ 0 1 1 ] h z + [ 0 2 0 ] i z + [ 0 2 0 ] j z + [ 0 2 1 ] k z + [ 0 2 1 ] l z + [ 1 0 0 ] m z + [ 1 0 0 ] n z + [ 1 0 1 ] p z + [ 1 0 1 ] q z + [ 1 1 0 ] r z + [ 1 1 0 ] s z + [ 1 1 1 ] t z + [ 1 1 1 ] u z + [ 1 2 0 ] v z + [ 1 2 0 ] w z + [ 1 2 1 ] x z + [ 2 0 0 ] A z + [ 2 0 0 ] B z + [ 2 0 1 ] C z + [ 2 0 1 ] D z + [ 2 1 0 ] E z + [ 2 1 0 ] F z + [ 2 1 1 ] G z + [ 2 1 1 ] H z + [ 2 2 0 ] I z + [ 2 2 0 ] J z + [ 2 2 1 ] K z + [ 2 2 1 ] L z + [ 3 0 0 ] M z + [ 3 0 0 ] N z + [ 3 0 1 ] P z + [ 3 0 1 ] Q z + [ 3 1 0 ] R z + [ 3 1 0 ] S z + [ 3 1 1 ] T z + [ 3 1 1 ] U z + [ 3 2 0 ] V z + [ 3 2 0 ] W z + [ 3 2 1 ] X z + [ 3 2 1 ] Z z + */ + tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid, (size_t)STR_SIZE); write_attr(loc_id,3,dims3,"string3D",tid,buf13); status = H5Tclose(tid); - + for (i=0; i<4; i++) { for (j=0; j<3; j++) @@ -1574,12 +1612,12 @@ void write_attr_in(hid_t loc_id, status = H5Tset_size(tid, H5T_VARIABLE); write_attr(loc_id,3,dims3,"VLstring3D",tid,buf13a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - + n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { @@ -1589,7 +1627,7 @@ void write_attr_in(hid_t loc_id, } } } - + /* position bitfield3D of </g1> bitfield3D of </g1> difference ------------------------------------------------------------ @@ -1618,11 +1656,11 @@ void write_attr_in(hid_t loc_id, [ 3 2 0 ] 23 0 23 [ 3 2 1 ] 24 0 24 */ - + tid = H5Tcopy(H5T_STD_B8LE); write_attr(loc_id,3,dims3,"bitfield3D",tid,buf23); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- @@ -1631,12 +1669,12 @@ void write_attr_in(hid_t loc_id, status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_attr(loc_id,3,dims3,"opaque3D",tid,buf23); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ - + n=1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { @@ -1703,13 +1741,13 @@ void write_attr_in(hid_t loc_id, [ 3 2 1 ] 47 0 47 [ 3 2 1 ] 48 0 48 */ - + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_attr(loc_id,3,dims3,"compound3D",tid,buf33); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -1725,12 +1763,12 @@ void write_attr_in(hid_t loc_id, } write_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); } - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ - + for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { @@ -1738,7 +1776,7 @@ void write_attr_in(hid_t loc_id, } } } - + /* position enum3D of </g1> enum3D of </g1> difference ------------------------------------------------------------ @@ -1767,19 +1805,19 @@ void write_attr_in(hid_t loc_id, [ 3 2 0 ] GREEN RED [ 3 2 1 ] GREEN RED */ - - + + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_attr(loc_id,3,dims3,"enum3D",tid,buf453); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ n=0; for (i = 0; i < 4; i++) { @@ -1818,7 +1856,7 @@ void write_attr_in(hid_t loc_id, status = H5Aclose(aid); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- @@ -1842,11 +1880,11 @@ void write_attr_in(hid_t loc_id, [ 0 1 0 ] 7 0 7 etc */ - + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_attr(loc_id, 3, dims3, "array3D", tid, buf63); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- @@ -1866,7 +1904,7 @@ void write_attr_in(hid_t loc_id, } } } - + /* position integer3D of </g1> integer3D of </g1> difference ------------------------------------------------------------ @@ -1889,12 +1927,12 @@ void write_attr_in(hid_t loc_id, /*------------------------------------------------------------------------- - * Function: write_dset_in - * - * Purpose: write datasets in LOC_ID - * - *------------------------------------------------------------------------- - */ +* Function: write_dset_in +* +* Purpose: write datasets in LOC_ID +* +*------------------------------------------------------------------------- +*/ static void write_dset_in(hid_t loc_id, const char* dset_name, /* for saving reference to dataset*/ @@ -1907,13 +1945,13 @@ void write_dset_in(hid_t loc_id, char a; double b; } s_t; - + typedef enum { RED, GREEN } e_t; - + hid_t did; hid_t sid; hid_t tid; @@ -1923,7 +1961,7 @@ void write_dset_in(hid_t loc_id, float f; int fillvalue=2; int scalar_data = 2; - + /* create 1D attributes with dimension [2], 2 elements */ hsize_t dims[1]={2}; char buf1[2][STR_SIZE]= {"ab","de"}; /* string */ @@ -1937,7 +1975,7 @@ void write_dset_in(hid_t loc_id, int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ int buf7[2]= {1,2}; /* integer */ float buf8[2]= {1,2}; /* float */ - + /* create 2D attributes with dimension [3][2], 6 elements */ hsize_t dims2[2]={3,2}; char buf12[3][2][STR_SIZE]= {{"ab","cd"},{"ef","gh"},{"ij","kl"}}; /* string */ @@ -1949,7 +1987,7 @@ void write_dset_in(hid_t loc_id, int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - + /* create 3D attributes with dimension [4][3][2], 24 elements */ hsize_t dims3[3]={4,3,2}; char buf13[4][3][2][STR_SIZE]= {{{"ab","cd"},{"ef","gh"},{"ij","kl"}}, @@ -1964,59 +2002,59 @@ void write_dset_in(hid_t loc_id, int buf63[24][3]; /* array */ int buf73[4][3][2]; /* integer */ float buf83[4][3][2]; /* float */ - - + + /*------------------------------------------------------------------------- * H5S_SCALAR *------------------------------------------------------------------------- */ - - - + + + if ( make_diffs ) { - + scalar_data = 1; } - + /* create a space */ sid = H5Screate(H5S_SCALAR); - + /* create a dataset */ did = H5Dcreate2(loc_id, "scalar", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - + /* write */ H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &scalar_data); - + /* close */ H5Dclose(did); H5Sclose(sid); - - + + /*------------------------------------------------------------------------- * 1D *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ - - + + if (make_diffs) { for (i=0; i<2; i++) for (j=0; j<2; j++) buf1[i][j]='z'; } - - + + tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid,(size_t)STR_SIZE); write_dset(loc_id,1,dims,"string",tid,buf1); status = H5Tclose(tid); - + for (i=0; i<2; i++) { buf1a[i]=buf1[i]; @@ -2025,27 +2063,27 @@ void write_dset_in(hid_t loc_id, status = H5Tset_size(tid, H5T_VARIABLE); write_dset(loc_id,1,dims,"VLstring",tid,buf1a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) buf2[i]=buf2[1]=0; } - + tid = H5Tcopy(H5T_STD_B8LE); write_dset(loc_id,1,dims,"bitfield",tid,buf2); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -2053,18 +2091,18 @@ void write_dset_in(hid_t loc_id, buf3[i].a=0; buf3[i].b=0; } } - + tid = H5Tcreate(H5T_OPAQUE, (size_t)1); status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_dset(loc_id,1,dims,"opaque",tid,buf2); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ - - + + if (make_diffs) { for (i=0; i<2; i++) @@ -2072,13 +2110,13 @@ void write_dset_in(hid_t loc_id, buf45[i]=GREEN; } } - + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_dset(loc_id,1,dims,"compound",tid,buf3); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -2090,14 +2128,14 @@ void write_dset_in(hid_t loc_id, status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1); write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4); } - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_DATASET_REGION dataset region reference) *------------------------------------------------------------------------- */ - + gen_datareg(fid,make_diffs); - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- @@ -2107,14 +2145,14 @@ void write_dset_in(hid_t loc_id, H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_dset(loc_id,1,dims,"enum",tid,buf45); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ - + buf5[0].len = 1; buf5[0].p = malloc( 1 * sizeof(int)); ((int *)buf5[0].p)[0]=1; @@ -2122,13 +2160,13 @@ void write_dset_in(hid_t loc_id, buf5[1].p = malloc( 2 * sizeof(int)); ((int *)buf5[1].p)[0]=2; ((int *)buf5[1].p)[1]=3; - + if(make_diffs) { ((int *)buf5[0].p)[0] = 0; ((int *)buf5[1].p)[0] = 0; ((int *)buf5[1].p)[1]=0; } - + sid = H5Screate_simple(1, dims, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); @@ -2139,12 +2177,12 @@ void write_dset_in(hid_t loc_id, status = H5Dclose(did); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -2153,7 +2191,7 @@ void write_dset_in(hid_t loc_id, buf6[i][j]=0; } } - + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 1, dims, "array", tid, buf6); status = H5Tclose(tid); @@ -2202,7 +2240,7 @@ void write_dset_in(hid_t loc_id, * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<2; i++) @@ -2211,21 +2249,21 @@ void write_dset_in(hid_t loc_id, buf8[i]=0; } } - + write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - + + /*------------------------------------------------------------------------- * 2D *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<3; i++) @@ -2233,13 +2271,13 @@ void write_dset_in(hid_t loc_id, for (k=0; k<2; k++) buf12[i][j][k]='z'; } - - + + tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid,(size_t)STR_SIZE); write_dset(loc_id,2,dims2,"string2D",tid,buf12); status = H5Tclose(tid); - + for (i=0; i<3; i++) { for (j=0; j<2; j++) @@ -2251,22 +2289,22 @@ void write_dset_in(hid_t loc_id, status = H5Tset_size(tid, H5T_VARIABLE); write_dset(loc_id,2,dims2,"VLstring2D",tid,buf12a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - - + + if (make_diffs) { memset(buf22,0,sizeof buf22); } - + tid = H5Tcopy(H5T_STD_B8LE); write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- @@ -2275,23 +2313,23 @@ void write_dset_in(hid_t loc_id, status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_dset(loc_id,2,dims2,"opaque2D",tid,buf22); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ - + if (make_diffs) { memset(buf32,0,sizeof buf32); } - + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_dset(loc_id,2,dims2,"compound2D",tid,buf32); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -2306,23 +2344,23 @@ void write_dset_in(hid_t loc_id, } write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); } - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ - + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_dset(loc_id,2,dims2,"enum2D",tid,0); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ n = 0; for(i = 0; i < 3; i++) @@ -2340,7 +2378,7 @@ void write_dset_in(hid_t loc_id, } } } - + sid = H5Screate_simple(2, dims2, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); @@ -2351,35 +2389,35 @@ void write_dset_in(hid_t loc_id, status = H5Dclose(did); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ - + if (make_diffs) { memset(buf62,0,sizeof buf62); } - - + + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 2, dims2, "array2D", tid, buf62); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_INTEGER, write a fill value *------------------------------------------------------------------------- */ - - + + if (make_diffs) { memset(buf72, 0, sizeof buf72); memset(buf82, 0, sizeof buf82); } - - + + dcpl = H5Pcreate(H5P_DATASET_CREATE); status = H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue); sid = H5Screate_simple(2, dims2, NULL); @@ -2388,25 +2426,25 @@ void write_dset_in(hid_t loc_id, status = H5Pclose(dcpl); status = H5Dclose(did); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_FLOAT *------------------------------------------------------------------------- */ - + write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - + + /*------------------------------------------------------------------------- * 3D *------------------------------------------------------------------------- */ - + /*------------------------------------------------------------------------- * H5T_STRING *------------------------------------------------------------------------- */ - + if (make_diffs) { for (i=0; i<4; i++) @@ -2415,12 +2453,12 @@ void write_dset_in(hid_t loc_id, for (l=0; l<2; l++) buf13[i][j][k][l]='z'; } - + tid = H5Tcopy(H5T_C_S1); status = H5Tset_size(tid,(size_t)STR_SIZE); write_dset(loc_id,3,dims3,"string3D",tid,buf13); status = H5Tclose(tid); - + for (i=0; i<4; i++) { for (j=0; j<3; j++) @@ -2435,13 +2473,13 @@ void write_dset_in(hid_t loc_id, status = H5Tset_size(tid, H5T_VARIABLE); write_dset(loc_id,3,dims3,"VLstring3D",tid,buf13a); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_BITFIELD *------------------------------------------------------------------------- */ - - + + n=1; for (i = 0; i < 4; i++) { @@ -2455,12 +2493,12 @@ void write_dset_in(hid_t loc_id, } } } - - + + tid = H5Tcopy(H5T_STD_B8LE); write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_OPAQUE *------------------------------------------------------------------------- @@ -2469,12 +2507,12 @@ void write_dset_in(hid_t loc_id, status = H5Tset_tag(tid, "1-byte opaque type"); /* must set this */ write_dset(loc_id,3,dims3,"opaque3D",tid,buf23); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_COMPOUND *------------------------------------------------------------------------- */ - + n=1; for (i = 0; i < 4; i++) { @@ -2494,14 +2532,14 @@ void write_dset_in(hid_t loc_id, } } } - - + + tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); write_dset(loc_id,3,dims3,"compound3D",tid,buf33); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_REFERENCE (H5R_OBJECT object reference) *------------------------------------------------------------------------- @@ -2517,23 +2555,23 @@ void write_dset_in(hid_t loc_id, } write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); } - + /*------------------------------------------------------------------------- * H5T_ENUM *------------------------------------------------------------------------- */ - + tid = H5Tcreate(H5T_ENUM, sizeof(e_t)); H5Tenum_insert(tid, "RED", (val = 0, &val)); H5Tenum_insert(tid, "GREEN", (val = 1, &val)); write_dset(loc_id,3,dims3,"enum3D",tid,0); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_VLEN *------------------------------------------------------------------------- */ - + /* Allocate and initialize VL dataset to write */ n=0; for(i = 0; i < 4; i++) @@ -2554,7 +2592,7 @@ void write_dset_in(hid_t loc_id, } } } - + sid = H5Screate_simple(3, dims3, NULL); tid = H5Tvlen_create(H5T_NATIVE_INT); did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); @@ -2565,13 +2603,13 @@ void write_dset_in(hid_t loc_id, status = H5Dclose(did); status = H5Tclose(tid); status = H5Sclose(sid); - + /*------------------------------------------------------------------------- * H5T_ARRAY *------------------------------------------------------------------------- */ - - + + n=1; for (i = 0; i < 24; i++) { for (j = 0; j < (int)dimarray[0]; j++) { @@ -2579,11 +2617,11 @@ void write_dset_in(hid_t loc_id, else buf63[i][j]=n++; } } - + tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray); write_dset(loc_id, 3, dims3, "array3D", tid, buf63); status = H5Tclose(tid); - + /*------------------------------------------------------------------------- * H5T_INTEGER and H5T_FLOAT *------------------------------------------------------------------------- @@ -2608,14 +2646,14 @@ void write_dset_in(hid_t loc_id, } /*------------------------------------------------------------------------- - * Function: gen_datareg - * - * Purpose: generate a dataset region and its reference - * - * Date: April 19, 2006 - * - *------------------------------------------------------------------------- - */ +* Function: gen_datareg +* +* Purpose: generate a dataset region and its reference +* +* Date: April 19, 2006 +* +*------------------------------------------------------------------------- +*/ static void gen_datareg(hid_t fid, @@ -2636,44 +2674,44 @@ void gen_datareg(hid_t fid, hsize_t coord[5][2]; /* coordinates for point selection */ herr_t status; int i; - + /* allocate the buffer for write the references */ rbuf = calloc((size_t)2, sizeof(hdset_reg_ref_t)); - + /* allocate the buffer for write the data dataset */ buf = malloc(10 * 10 * sizeof(int)); - + for(i = 0; i < 10 * 10; i++) buf[i] = i; - + /* create the data dataset */ sid1 = H5Screate_simple(2, dims1, NULL); did1 = H5Dcreate2(fid, "dsetref", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); assert(status >= 0); - + /* create the reference dataset */ sid2 = H5Screate_simple(1, dims2, NULL); did2 = H5Dcreate2(fid, "refreg", H5T_STD_REF_DSETREG, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - + /* create the references */ /* select hyperslab for first reference */ - + start[0] = 2; start[1] = 2; count[0] = 6; count[1] = 6; if(make_diffs) { start[0] = 0; start[1] = 0; count[0] = 3; count[1] = 3; } - + status = H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL); assert(status >= 0); H5Sget_select_npoints(sid1); - + /* store first dataset region */ status = H5Rcreate(&rbuf[0], fid, "dsetref", H5R_DATASET_REGION, sid1); assert(status >= 0); - + /* select sequence of five points for second reference */ coord[0][0]=6; coord[0][1]=9; coord[1][0]=2; coord[1][1]=2; @@ -2688,14 +2726,14 @@ void gen_datareg(hid_t fid, } H5Sselect_elements(sid1,H5S_SELECT_SET,(size_t)5,(const hsize_t *)coord); H5Sget_select_npoints(sid1); - + /* store second dataset region */ H5Rcreate(&rbuf[1],fid,"dsetref",H5R_DATASET_REGION,sid1); - + /* write */ status = H5Dwrite(did2,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf); assert(status >= 0); - + /* close, free memory buffers */ status = H5Dclose(did1); assert(status >= 0); @@ -2712,13 +2750,13 @@ void gen_datareg(hid_t fid, /*------------------------------------------------------------------------- - * Function: test_hyperslab - * - * Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions - * by iterating trough 1KB hyperslabs - * - *------------------------------------------------------------------------- - */ +* Function: test_hyperslab +* +* Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions +* by iterating trough 1KB hyperslabs +* +*------------------------------------------------------------------------- +*/ static int test_hyperslab(const char *fname, int make_diffs /* flag to modify data buffers */) @@ -2739,7 +2777,7 @@ int test_hyperslab(const char *fname, char *buf=NULL; int i, j, s; char c; - + /* create */ fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) @@ -2758,7 +2796,7 @@ int test_hyperslab(const char *fname, goto out; if((size = H5Tget_size(tid)) <= 0) goto out; - + /* create a evenly divided buffer from 0 to 127 */ buf = (char *)HDmalloc((size_t)(nelmts * size)); s = 1024 * 1024 / 127; @@ -2767,29 +2805,29 @@ int test_hyperslab(const char *fname, c++; j = 0; } - + /* set the hyperslab values */ HDmemset(buf, c, nelmts); - + /* make a different hyperslab at this position */ if(make_diffs && i == 512 * 512) HDmemset(buf, 0, nelmts); - + hs_start[0] = i * GBLL/(1024*1024); if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0) goto out; - + /* write only one hyperslab */ if ( i==512*512) { if (H5Dwrite (did,H5T_NATIVE_CHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0) goto out; } - + } free(buf); buf=NULL; - + /* close */ if(H5Sclose(f_sid) < 0) goto out; @@ -2800,9 +2838,9 @@ int test_hyperslab(const char *fname, if(H5Dclose(did) < 0) goto out; H5Fclose(fid); - + return 0; - + out: H5E_BEGIN_TRY { H5Pclose(dcpl); @@ -2812,17 +2850,17 @@ out: H5Fclose(fid); } H5E_END_TRY; return -1; - + } /*------------------------------------------------------------------------- - * Function: write_attr - * - * Purpose: utility function to write an attribute in LOC_ID - * - *------------------------------------------------------------------------- - */ +* Function: write_attr +* +* Purpose: utility function to write an attribute in LOC_ID +* +*------------------------------------------------------------------------- +*/ static int write_attr(hid_t loc_id, int rank, @@ -2863,19 +2901,19 @@ out: } /*------------------------------------------------------------------------- - * Function: write_dset - * - * Purpose: utility function to create and write a dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ +* Function: write_dset +* +* Purpose: utility function to create and write a dataset in LOC_ID +* +*------------------------------------------------------------------------- +*/ static int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *name, - hid_t tid, - void *buf ) + int rank, + hsize_t *dims, + const char *name, + hid_t tid, + void *buf ) { hid_t did=-1; hid_t sid=-1; diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index ebf541e..5d026ea 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -273,12 +273,10 @@ hsize_t diff_array( void *_mem1, nfound=diff_float(mem1,mem2,nelmts,hyper_start,rank,dims,acc,pos,options,name1,name2,&ph); else if (H5Tequal(m_type, H5T_NATIVE_DOUBLE)) nfound=diff_double(mem1,mem2,nelmts,hyper_start,rank,dims,acc,pos,options,name1,name2,&ph); - #if H5_SIZEOF_LONG_DOUBLE !=0 else if (H5Tequal(m_type, H5T_NATIVE_LDOUBLE)) nfound=diff_ldouble(mem1,mem2,nelmts,hyper_start,rank,dims,acc,pos,options,name1,name2,&ph); -#endif - +#endif break; case H5T_INTEGER: @@ -1842,7 +1840,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { if (ABS(temp1_float-temp2_float) > options->delta) @@ -1856,7 +1855,19 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } } /*------------------------------------------------------------------------- * !-d and -p @@ -1875,7 +1886,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_float,temp2_float); @@ -1906,7 +1918,19 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } } /*------------------------------------------------------------------------- @@ -1927,7 +1951,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_float,temp2_float); @@ -1959,7 +1984,19 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } } /*------------------------------------------------------------------------- @@ -1991,7 +2028,6 @@ hsize_t diff_datum(void *_mem1, int isnan1=0; int isnan2=0; - assert(type_size==sizeof(double)); memcpy(&temp1_double, mem1, sizeof(double)); @@ -2016,7 +2052,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { if (ABS(temp1_double-temp2_double) > options->delta) @@ -2030,8 +2067,20 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ - } + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } + } /* options->d && !options->p */ /*------------------------------------------------------------------------- * !-d and -p @@ -2050,7 +2099,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_double,temp2_double); @@ -2082,7 +2132,19 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } } /*------------------------------------------------------------------------- @@ -2102,7 +2164,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_double,temp2_double); @@ -2135,7 +2198,19 @@ hsize_t diff_datum(void *_mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } } /*------------------------------------------------------------------------- @@ -2194,7 +2269,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { if (ABS(temp1_double-temp2_double) > options->delta) @@ -2228,7 +2304,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_double,temp2_double); @@ -2280,7 +2357,8 @@ hsize_t diff_datum(void *_mem1, isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_double,temp2_double); @@ -2791,7 +2869,8 @@ hsize_t diff_float(unsigned char *mem1, isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { if (ABS(temp1_float-temp2_float) > options->delta) { @@ -2803,7 +2882,19 @@ hsize_t diff_float(unsigned char *mem1, } nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } mem1+=sizeof(float); mem2+=sizeof(float); if (options->n && nfound>=options->count) @@ -2831,8 +2922,8 @@ hsize_t diff_float(unsigned char *mem1, isnan1 = my_isnan(FLT_FLOAT,&temp1_float); isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_float,temp2_float); @@ -2863,7 +2954,19 @@ hsize_t diff_float(unsigned char *mem1, } nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } mem1+=sizeof(float); mem2+=sizeof(float); if (options->n && nfound>=options->count) @@ -2893,7 +2996,8 @@ hsize_t diff_float(unsigned char *mem1, isnan2 = my_isnan(FLT_FLOAT,&temp2_float); } - if ( !isnan1 && !isnan2) + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) { PER(temp1_float,temp2_float); @@ -2925,7 +3029,19 @@ hsize_t diff_float(unsigned char *mem1, nfound++; } - } /* NaN */ + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_float,temp2_float,ABS(temp1_float-temp2_float)); + } + nfound++; + + } mem1+=sizeof(float); mem2+=sizeof(float); if (options->n && nfound>=options->count) @@ -2976,7 +3092,6 @@ hsize_t diff_float(unsigned char *mem1, } - /*------------------------------------------------------------------------- * Function: diff_double * @@ -2987,17 +3102,17 @@ hsize_t diff_float(unsigned char *mem1, *------------------------------------------------------------------------- */ hsize_t diff_double(unsigned char *mem1, - unsigned char *mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - hsize_t *acc, - hsize_t *pos, - diff_opt_t *options, - const char *obj1, - const char *obj2, - int *ph) + unsigned char *mem2, + hsize_t nelmts, + hsize_t hyper_start, + int rank, + hsize_t *dims, + hsize_t *acc, + hsize_t *pos, + diff_opt_t *options, + const char *obj1, + const char *obj2, + int *ph) { hsize_t nfound=0; /* number of differences found */ @@ -3006,18 +3121,48 @@ hsize_t diff_double(unsigned char *mem1, hsize_t i; double per; int both_zero; + int isnan1=0; + int isnan2=0; - /* -d and !-p */ + /*------------------------------------------------------------------------- + * -d and !-p + *------------------------------------------------------------------------- + */ + if (options->d && !options->p) { - for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(double)); memcpy(&temp2_double, mem2, sizeof(double)); - if (ABS(temp1_double-temp2_double) > options->delta) + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) + { + isnan1 = my_isnan(FLT_DOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); + } + + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { + if (ABS(temp1_double-temp2_double) > options->delta) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + } + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) { if ( print_data(options) ) { @@ -3026,59 +3171,91 @@ hsize_t diff_double(unsigned char *mem1, parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); } nfound++; + } mem1+=sizeof(double); mem2+=sizeof(double); if (options->n && nfound>=options->count) return nfound; - } + } /* i */ } - /* !-d and -p */ + /*------------------------------------------------------------------------- + * !-d and -p + *------------------------------------------------------------------------- + */ else if (!options->d && options->p) { - for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(double)); memcpy(&temp2_double, mem2, sizeof(double)); - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) /* not comparable */ + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) { - if ( print_data(options) ) - { - print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, - ABS(temp1_double-temp2_double)); - } - nfound++; + isnan1 = my_isnan(FLT_DOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); } + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { - else + PER(temp1_double,temp2_double); - if ( per > options->percent ) + if (not_comparable && !both_zero) /* not comparable */ { if ( print_data(options) ) { print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(F_FORMAT_P,temp1_double,temp2_double, - ABS(temp1_double-temp2_double), - ABS(1-temp2_double/temp1_double)); + parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, + ABS(temp1_double-temp2_double)); } nfound++; } - mem1+=sizeof(double); - mem2+=sizeof(double); - if (options->n && nfound>=options->count) - return nfound; - } + + else + + if ( per > options->percent ) + { + if ( print_data(options) ) + { + print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT_P,temp1_double,temp2_double, + ABS(temp1_double-temp2_double), + ABS(1-temp2_double/temp1_double)); + } + nfound++; + } + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } + mem1+=sizeof(double); + mem2+=sizeof(double); + if (options->n && nfound>=options->count) + return nfound; + } /* i */ } - /* -d and -p */ + /*------------------------------------------------------------------------- + * -d and -p + *------------------------------------------------------------------------- + */ else if ( options->d && options->p) { @@ -3087,48 +3264,84 @@ hsize_t diff_double(unsigned char *mem1, memcpy(&temp1_double, mem1, sizeof(double)); memcpy(&temp2_double, mem2, sizeof(double)); - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) /* not comparable */ + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) { - if ( print_data(options) ) - { - print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); - parallel_print(SPACES); - parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, - ABS(temp1_double-temp2_double)); - } - nfound++; + isnan1 = my_isnan(FLT_DOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_DOUBLE,&temp2_double); } - else + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { + + PER(temp1_double,temp2_double); - if ( per > options->percent && ABS(temp1_double-temp2_double) > options->delta ) + if (not_comparable && !both_zero) /* not comparable */ { if ( print_data(options) ) { print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(F_FORMAT_P,temp1_double,temp2_double, - ABS(temp1_double-temp2_double), - ABS(1-temp2_double/temp1_double)); + parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, + ABS(temp1_double-temp2_double)); } nfound++; } - mem1+=sizeof(double); - mem2+=sizeof(double); - if (options->n && nfound>=options->count) - return nfound; - } + + else + + if ( per > options->percent && ABS(temp1_double-temp2_double) > options->delta ) + { + if ( print_data(options) ) + { + print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT_P,temp1_double,temp2_double, + ABS(temp1_double-temp2_double), + ABS(1-temp2_double/temp1_double)); + } + nfound++; + } + + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } + mem1+=sizeof(double); + mem2+=sizeof(double); + if (options->n && nfound>=options->count) + return nfound; + } /* i */ } + + /*------------------------------------------------------------------------- + * no -d and -p + *------------------------------------------------------------------------- + */ else { + + for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(double)); memcpy(&temp2_double, mem2, sizeof(double)); + if (equal_double(temp1_double,temp2_double,options)==FALSE) { if ( print_data(options) ) @@ -3144,14 +3357,22 @@ hsize_t diff_double(unsigned char *mem1, mem2+=sizeof(double); if (options->n && nfound>=options->count) return nfound; + } /* nelmts */ + + + + } return nfound; } + + + /*------------------------------------------------------------------------- * Function: diff_ldouble * @@ -3162,19 +3383,19 @@ hsize_t diff_double(unsigned char *mem1, *------------------------------------------------------------------------- */ #if H5_SIZEOF_LONG_DOUBLE !=0 - + hsize_t diff_ldouble(unsigned char *mem1, - unsigned char *mem2, - hsize_t nelmts, - hsize_t hyper_start, - int rank, - hsize_t *dims, - hsize_t *acc, - hsize_t *pos, - diff_opt_t *options, - const char *obj1, - const char *obj2, - int *ph) + unsigned char *mem2, + hsize_t nelmts, + hsize_t hyper_start, + int rank, + hsize_t *dims, + hsize_t *acc, + hsize_t *pos, + diff_opt_t *options, + const char *obj1, + const char *obj2, + int *ph) { hsize_t nfound=0; /* number of differences found */ @@ -3183,79 +3404,141 @@ hsize_t diff_ldouble(unsigned char *mem1, hsize_t i; double per; int both_zero; + int isnan1=0; + int isnan2=0; - /* -d and !-p */ + /*------------------------------------------------------------------------- + * -d and !-p + *------------------------------------------------------------------------- + */ + if (options->d && !options->p) { - for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(long double)); memcpy(&temp2_double, mem2, sizeof(long double)); - if (ABS(temp1_double-temp2_double) > options->delta) + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) + { + isnan1 = my_isnan(FLT_LDOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); + } + + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { + if (ABS(temp1_double-temp2_double) > options->delta) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + } + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) { if ( print_data(options) ) { print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(LD_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); } nfound++; + } mem1+=sizeof(long double); mem2+=sizeof(long double); if (options->n && nfound>=options->count) return nfound; - } + } /* i */ } - /* !-d and -p */ + /*------------------------------------------------------------------------- + * !-d and -p + *------------------------------------------------------------------------- + */ else if (!options->d && options->p) { - for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(long double)); memcpy(&temp2_double, mem2, sizeof(long double)); - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) /* not comparable */ + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) { - if ( print_data(options) ) - { - print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P_NOTCOMP,temp1_double,temp2_double, - ABS(temp1_double-temp2_double)); - } - nfound++; + isnan1 = my_isnan(FLT_LDOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); } + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { - else + PER(temp1_double,temp2_double); - if ( per > options->percent ) + if (not_comparable && !both_zero) /* not comparable */ { if ( print_data(options) ) { print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(LD_FORMAT_P,temp1_double,temp2_double, - ABS(temp1_double-temp2_double), - ABS(1-temp2_double/temp1_double)); + parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, + ABS(temp1_double-temp2_double)); } nfound++; } - mem1+=sizeof(long double); - mem2+=sizeof(long double); - if (options->n && nfound>=options->count) - return nfound; - } + + else + + if ( per > options->percent ) + { + if ( print_data(options) ) + { + print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT_P,temp1_double,temp2_double, + ABS(temp1_double-temp2_double), + ABS(1-temp2_double/temp1_double)); + } + nfound++; + } + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } + mem1+=sizeof(long double); + mem2+=sizeof(long double); + if (options->n && nfound>=options->count) + return nfound; + } /* i */ } - /* -d and -p */ + /*------------------------------------------------------------------------- + * -d and -p + *------------------------------------------------------------------------- + */ else if ( options->d && options->p) { @@ -3264,55 +3547,91 @@ hsize_t diff_ldouble(unsigned char *mem1, memcpy(&temp1_double, mem1, sizeof(long double)); memcpy(&temp2_double, mem2, sizeof(long double)); - PER(temp1_double,temp2_double); - - if (not_comparable && !both_zero) /* not comparable */ + /*------------------------------------------------------------------------- + * detect NaNs + *------------------------------------------------------------------------- + */ + if ( options->do_nans ) { - if ( print_data(options) ) - { - print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); - parallel_print(SPACES); - parallel_print(LD_FORMAT_P_NOTCOMP,temp1_double,temp2_double, - ABS(temp1_double-temp2_double)); - } - nfound++; + isnan1 = my_isnan(FLT_LDOUBLE,&temp1_double); + isnan2 = my_isnan(FLT_LDOUBLE,&temp2_double); } - else + /* both not NaN, do the comparison */ + if ( isnan1==0 && isnan2==0) + { + + PER(temp1_double,temp2_double); - if ( per > options->percent && ABS(temp1_double-temp2_double) > options->delta ) + if (not_comparable && !both_zero) /* not comparable */ { if ( print_data(options) ) { print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(LD_FORMAT_P,temp1_double,temp2_double, - ABS(temp1_double-temp2_double), - ABS(1-temp2_double/temp1_double)); + parallel_print(F_FORMAT_P_NOTCOMP,temp1_double,temp2_double, + ABS(temp1_double-temp2_double)); } nfound++; } - mem1+=sizeof(long double); - mem2+=sizeof(long double); - if (options->n && nfound>=options->count) - return nfound; - } + + else + + if ( per > options->percent && ABS(temp1_double-temp2_double) > options->delta ) + { + if ( print_data(options) ) + { + print_pos(ph,1,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT_P,temp1_double,temp2_double, + ABS(temp1_double-temp2_double), + ABS(1-temp2_double/temp1_double)); + } + nfound++; + } + + } + /* one is NaN, assume difference */ + else if ( isnan1==1 || isnan2==1) + { + if ( print_data(options) ) + { + print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); + parallel_print(SPACES); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + } + nfound++; + + } + mem1+=sizeof(long double); + mem2+=sizeof(long double); + if (options->n && nfound>=options->count) + return nfound; + } /* i */ } + + /*------------------------------------------------------------------------- + * no -d and -p + *------------------------------------------------------------------------- + */ else { + + for ( i = 0; i < nelmts; i++) { memcpy(&temp1_double, mem1, sizeof(long double)); memcpy(&temp2_double, mem2, sizeof(long double)); + if (equal_ldouble(temp1_double,temp2_double,options)==FALSE) { if ( print_data(options) ) { print_pos(ph,0,hyper_start+i,acc,pos,rank,dims,obj1,obj2); parallel_print(SPACES); - parallel_print(LD_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); + parallel_print(F_FORMAT,temp1_double,temp2_double,ABS(temp1_double-temp2_double)); } nfound++; } @@ -3321,15 +3640,24 @@ hsize_t diff_ldouble(unsigned char *mem1, mem2+=sizeof(long double); if (options->n && nfound>=options->count) return nfound; + } /* nelmts */ + + + + } return nfound; } - #endif /* H5_SIZEOF_LONG_DOUBLE */ + + + + + /*------------------------------------------------------------------------- * Function: diff_schar * @@ -5208,12 +5536,7 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) if ( (isnan1 && !isnan2) || ( !isnan1 && isnan2 ) ) { return FALSE; - } - - /*------------------------------------------------------------------------- - * both are not NaNs, compare - *------------------------------------------------------------------------- - */ + } } BOTH_ZERO(value,expected) @@ -5274,13 +5597,7 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio if ( (isnan1 && !isnan2) || ( !isnan1 && isnan2 ) ) { return FALSE; - } - - /*------------------------------------------------------------------------- - * both are not NaNs, compare - *------------------------------------------------------------------------- - */ - + } } BOTH_ZERO(value,expected) @@ -5344,13 +5661,7 @@ hbool_t equal_float(float value, float expected, diff_opt_t *options) if ( (isnan1 && !isnan2) || ( !isnan1 && isnan2 ) ) { return FALSE; - } - - /*------------------------------------------------------------------------- - * both are not NaNs, compare - *------------------------------------------------------------------------- - */ - + } } BOTH_ZERO(value,expected) |