diff options
| author | Allen Byrne <byrn@hdfgroup.org> | 2011-05-20 17:09:57 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2011-05-20 17:09:57 (GMT) |
| commit | 3f11adaec28a55a5772d702752b433aa0289adaf (patch) | |
| tree | 2b30e23adcc5e32c43c2dc9d2f4039bf45a34c8a | |
| parent | 2de5fa986fc4e8588af5df33ed5c6500a7fa5a96 (diff) | |
| download | hdf5-3f11adaec28a55a5772d702752b433aa0289adaf.zip hdf5-3f11adaec28a55a5772d702752b433aa0289adaf.tar.gz hdf5-3f11adaec28a55a5772d702752b433aa0289adaf.tar.bz2 | |
[svn-r20875] Refactor h5import to close files and free allocations. Also corrected test dependencies so that memcheck would process tests in correct order.
Tested: local linux - confirmed with valgrind
| -rwxr-xr-x | config/cmake/CTestCustom.cmake | 16 | ||||
| -rw-r--r-- | tools/h5import/CMakeLists.txt | 37 | ||||
| -rwxr-xr-x | tools/h5import/h5import.c | 4317 | ||||
| -rwxr-xr-x | tools/h5import/h5import.h | 177 |
4 files changed, 2222 insertions, 2325 deletions
diff --git a/config/cmake/CTestCustom.cmake b/config/cmake/CTestCustom.cmake index efc4443..b687051 100755 --- a/config/cmake/CTestCustom.cmake +++ b/config/cmake/CTestCustom.cmake @@ -41,22 +41,6 @@ SET (CTEST_CUSTOM_MEMCHECK_IGNORE H5DUMP-XML-clearall-objects ######### tools/h5import ######### H5IMPORT-clear-objects - H5IMPORT-ASCII_F32-clear-objects - H5IMPORT-ASCII_UI16-clear-objects - H5IMPORT-ASCII_UI32-clear-objects - H5IMPORT-ASCII_I8-clear-objects - H5IMPORT-ASCII_I16-clear-objects - H5IMPORT-ASCII_I32-clear-objects - H5IMPORT-ASCII_F64_R1-clear-objects - H5IMPORT-BINARY_I8_EOF-clear-objects - H5IMPORT-STR-clear-objects - H5IMPORT-BINARY_UI32-clear-objects - H5IMPORT-BINARY_UI16-clear-objects - H5IMPORT-BINARY_I32-clear-objects - H5IMPORT-BINARY_I8-clear-objects - H5IMPORT-BINARY_I16-clear-objects - H5IMPORT-BINARY_F64-clear-objects - H5IMPORT-ASCII_F64-clear-objects ######### tools/h5jam ######### H5JAM-SETUP-N_twithub_u10_c-clear-objects H5JAM-SETUP-N_twithub_u10_c diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index 39945d3..fb0c938 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -116,21 +116,27 @@ IF (BUILD_TESTING) ############################################################################## ############################################################################## MACRO (ADD_H5_TEST testname importfile conffile testfile) - ADD_TEST ( - NAME H5IMPORT-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ${testfile} - ${testfile}.new - ${testfile}.new.err - ${testfile}.out - ${testfile}.out.err - ) + IF (NOT HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5IMPORT-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${testfile} + ${testfile}.new + ${testfile}.new.err + ${testfile}.out + ${testfile}.out.err + ) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5IMPORT-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + SET (last_test "H5IMPORT-${testname}-clear-objects") + ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER) + + ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c testfiles/${conffile} -o ${testfile}) IF (NOT "${last_test}" STREQUAL "") - SET_TESTS_PROPERTIES (H5IMPORT-${testname}-clear-objects PROPERTIES DEPENDS ${last_test}) + SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") - ADD_TEST (NAME H5IMPORT-${testname} COMMAND $<TARGET_FILE:h5import> ${importfile} -c testfiles/${conffile} -o ${testfile}) - SET_TESTS_PROPERTIES (H5IMPORT-${testname} PROPERTIES DEPENDS H5IMPORT-${testname}-clear-objects) SET (last_test "H5IMPORT-${testname}") # If using memchecker add tests without using scripts @@ -187,9 +193,12 @@ IF (BUILD_TESTING) txtin32.txt ${HDF5_REFERENCE_TEST_FILES} ) + SET (last_test "H5IMPORT-clear-objects") ADD_TEST (NAME H5IMPORT-h5importtest COMMAND $<TARGET_FILE:h5importtest>) - SET_TESTS_PROPERTIES (H5IMPORT-h5importtest PROPERTIES DEPENDS H5IMPORT-clear-objects) + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5IMPORT-h5importtest PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") SET (last_test "H5IMPORT-h5importtest") # ----- TESTING "ASCII I32 rank 3 - Output BE " ; diff --git a/tools/h5import/h5import.c b/tools/h5import/h5import.c index 82b92d2..bbd8746 100755 --- a/tools/h5import/h5import.c +++ b/tools/h5import/h5import.c @@ -22,250 +22,257 @@ #include "h5import.h" #include "h5tools_utils.h" - /* Name of tool */ #define PROGRAMNAME "h5import" int main(int argc, char *argv[]) { - struct Options opt; - int outfile_named = FALSE; - int token; - int i; - int state = 0; - struct Input *in=NULL; - - const char *err1 = "Invalid number of arguments: %d.\n"; - const char *err2 = "Error in state table.\n"; - const char *err3 = "No output file given.\n"; - const char *err4 = "Program aborted.\n"; - const char *err5 = "Invalid path %s.\n"; - const char *err6 = "Invalid dimensions - %s.\n"; - const char *err7 = "Invalid type of data - %s.\n"; - const char *err8 = "Invalid size of data - %s.\n"; - const char *err9 = "Cannot specify more than 30 input files in one call to h5import.\n"; + struct Options opt; + int outfile_named = FALSE; + int token; + int i; + int state = 0; + struct Input *in = NULL; + + const char *err1 = "Invalid number of arguments: %d.\n"; + const char *err2 = "Error in state table.\n"; + const char *err3 = "No output file given.\n"; + const char *err4 = "Program aborted.\n"; + const char *err5 = "Invalid path %s.\n"; + const char *err6 = "Invalid dimensions - %s.\n"; + const char *err7 = "Invalid type of data - %s.\n"; + const char *err8 = "Invalid size of data - %s.\n"; + const char *err9 = "Cannot specify more than 30 input files in one call to h5import.\n"; h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); - (void)HDsetvbuf(stderr, (char *) NULL, _IOLBF, 0); - (void)HDsetvbuf(stdout, (char *) NULL, _IOLBF, 0); + (void) HDsetvbuf(stderr, (char *) NULL, _IOLBF, 0); + (void) HDsetvbuf(stdout, (char *) NULL, _IOLBF, 0); - if ( argv[1] && (strcmp("-V",argv[1])==0) ) - { + if (argv[1] && (strcmp("-V", argv[1]) == 0)) { print_version("h5import"); exit(EXIT_SUCCESS); + } + /* + * validate the number of command line arguments + */ + if (argc < 2) { + (void) fprintf(stderr, err1, argc); + usage(argv[0]); + goto err; } - /* - * validate the number of command line arguments - */ + /* Initialize the file structure to 0 */ + HDmemset(&opt, 0, sizeof(struct Options)); - if (argc < 2) - { - (void) fprintf(stderr, err1, argc); - usage(argv[0]); - goto err; - } + /* + * parse the command line + */ + for (i = 1; i < argc; i++) { + if ((token = gtoken(argv[i])) == ERR) { + usage(argv[0]); + goto err; + } - /* Initialize the file count to 0 */ - opt.fcount = 0; + state = state_table[state][token]; - /* - * parse the command line - */ + switch (state) { - for (i = 1; i < argc; i++) - { - if ((token = gtoken(argv[i])) == ERR) - { - usage(argv[0]); - goto err; - } + case 1: /* counting input files */ + if (opt.fcount < 29) { + (void) HDstrcpy(opt.infiles[opt.fcount].datafile, argv[i]); + in = &(opt.infiles[opt.fcount].in); + opt.infiles[opt.fcount].config = 0; + setDefaultValues(in, opt.fcount); + opt.fcount++; + } + else { + (void) fprintf(stderr, err9, argv[i]); + goto err; + } - state = state_table[state][token]; + break; - switch (state) - { + case 2: /* -c found; look for configfile */ + break; - case 1: /* counting input files */ - if (opt.fcount < 29) { - (void) HDstrcpy(opt.infiles[opt.fcount].datafile, argv[i]); - in = &(opt.infiles[opt.fcount].in); - opt.infiles[opt.fcount].config = 0; - setDefaultValues(in, opt.fcount); - opt.fcount++; - } - else { - (void) fprintf(stderr, err9, argv[i]); - goto err; - } - - break; - - case 2: /* -c found; look for configfile */ - break; - - case 3: /* get configfile name */ - (void) HDstrcpy(opt.infiles[opt.fcount-1].configfile, argv[i]); - opt.infiles[opt.fcount-1].config = 1; - break; - - case 4: /* -o found; look for outfile */ - break; - - case 5: /* get outfile found */ - (void) HDstrcpy(opt.outfile, argv[i]); - outfile_named = TRUE; - break; - - case 6: /* -h found; help, then exit */ - help(argv[0]); - exit(EXIT_SUCCESS); - break; + case 3: /* get configfile name */ + (void) HDstrcpy(opt.infiles[opt.fcount-1].configfile, argv[i]); + opt.infiles[opt.fcount - 1].config = 1; + break; - case 7: /* -d found; look for dimensions */ - break; + case 4: /* -o found; look for outfile */ + break; - case 8: /* read dimensions */ - if (parseDimensions(in, argv[i]) == -1) - { - (void) fprintf(stderr, err6, argv[i]); - goto err; - } - break; + case 5: /* get outfile found */ + (void) HDstrcpy(opt.outfile, argv[i]); + outfile_named = TRUE; + break; - case 9: /* -p found; look for path name */ - break; + case 6: /* -h found; help, then exit */ + help(argv[0]); + exit(EXIT_SUCCESS); + break; - case 10: /* read path name */ - if (parsePathInfo(&in->path, argv[i]) == -1) - { - (void) fprintf(stderr, err5, argv[i]); - goto err; - } - break; + case 7: /* -d found; look for dimensions */ + break; - case 11: /* -t found; look for data type */ - break; + case 8: /* read dimensions */ + if (parseDimensions(in, argv[i]) == -1) { + (void) fprintf(stderr, err6, argv[i]); + goto err; + } + break; - case 12: /* read data type */ - if (getInputClass(in, argv[i]) == -1) - { - (void) fprintf(stderr, err7, argv[i]); - goto err; - } + case 9: /* -p found; look for path name */ + break; - if (in->inputClass == 0 || in->inputClass == 4) - in->outputClass = 0; - if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3) - in->outputClass = 1; - if (in->inputClass == 6 || in->inputClass == 7) - in->outputClass = 2; - break; - - case 13: /* -s found; look for data size */ - break; - - case 14: /* read data size */ - if (getInputSize(in, (int)HDstrtol(argv[i], NULL, BASE_10)) == -1) - { - (void) fprintf(stderr, err8, argv[i]); - goto err; + case 10: /* read path name */ + if (parsePathInfo(&in->path, argv[i]) == -1) { + (void) fprintf(stderr, err5, argv[i]); + goto err; + } + break; + + case 11: /* -t found; look for data type */ + break; + + case 12: /* read data type */ + if (getInputClass(in, argv[i]) == -1) { + (void) fprintf(stderr, err7, argv[i]); + goto err; + } + + if (in->inputClass == 0 || in->inputClass == 4) + in->outputClass = 0; + if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3) + in->outputClass = 1; + if (in->inputClass == 6 || in->inputClass == 7) + in->outputClass = 2; + break; + + case 13: /* -s found; look for data size */ + break; + + case 14: /* read data size */ + if (getInputSize(in, (int) HDstrtol(argv[i], NULL, BASE_10)) == -1) { + (void) fprintf(stderr, err8, argv[i]); + goto err; + } + /*set default value for output-size */ + in->outputSize = in->inputSize; + break; + + case ERR: /* command syntax error */ + default: + (void) fprintf(stderr, "%s", err2); + usage(argv[0]); + goto err; } - /*set default value for output-size */ - in->outputSize = in->inputSize; - break; + } - case ERR: /* command syntax error */ - default: - (void) fprintf(stderr, "%s", err2); + if (FALSE == outfile_named) { + (void) fprintf(stderr, "%s", err3); usage(argv[0]); goto err; } - } - if (FALSE == outfile_named) - { - (void) fprintf(stderr, "%s", err3); - usage(argv[0]); - goto err; - } - - if (process(&opt) == -1) - goto err; + if (process(&opt) == -1) + goto err; + + for (i = 0; i < opt.fcount; i++) { + in = &(opt.infiles[i].in); + if (in->sizeOfDimension) + free(in->sizeOfDimension); + if (in->sizeOfChunk) + free(in->sizeOfChunk); + if (in->maxsizeOfDimension) + free(in->maxsizeOfDimension); + if (in->externFilename) + free(in->externFilename); + if (in->data) + free(in->data); + } - return(EXIT_SUCCESS); - err: + return (EXIT_SUCCESS); +err: (void) fprintf(stderr, "%s", err4); - return(EXIT_FAILURE); + for (i = 0; i < opt.fcount; i++) { + in = &(opt.infiles[i].in); + if (in->sizeOfDimension) + free(in->sizeOfDimension); + if (in->sizeOfChunk) + free(in->sizeOfChunk); + if (in->maxsizeOfDimension) + free(in->maxsizeOfDimension); + if (in->externFilename) + free(in->externFilename); + if (in->data) + free(in->data); + } + return (EXIT_FAILURE); } -static int -gtoken(char *s) +static int gtoken(char *s) { - size_t len; - int token; - - const char *err1 = "Illegal argument: %s.\n"; - - /* - * identify the token type - */ - if (s[0] == '-') - { /* option name (or negative number) */ - token = ERR; - len = HDstrlen(&s[1]); - switch (s[1]) - { - case 'o': - if (!HDstrncmp("outfile", &s[1], len)) - token = OPT_o; - break; - - case 'c': - if (!HDstrncmp("config", &s[1], len)) - token = OPT_c; - break; - - case 'h': - if (!HDstrncmp("help", &s[1], len)) - token = OPT_h; - break; - - case 'd': - if (!HDstrncmp("dims", &s[1], len)) - token = OPT_d; - break; - - case 'p': - if (!HDstrncmp("path", &s[1], len)) - token = OPT_p; - break; - - case 't': - if (!HDstrncmp("type", &s[1], len)) - token = OPT_t; - break; - - case 's': - if (!HDstrncmp("size", &s[1], len)) - token = OPT_s; - break; - } + size_t len; + int token; + + const char *err1 = "Illegal argument: %s.\n"; + + /* + * identify the token type + */ + if (s[0] == '-') { /* option name (or negative number) */ + token = ERR; + len = HDstrlen(&s[1]); + switch (s[1]) { + case 'o': + if (!HDstrncmp("outfile", &s[1], len)) + token = OPT_o; + break; - if (token == ERR) - (void) fprintf(stderr, err1, s); - } - else /* filename */ - { - token = FILNAME; - } - return (token); -} + case 'c': + if (!HDstrncmp("config", &s[1], len)) + token = OPT_c; + break; + + case 'h': + if (!HDstrncmp("help", &s[1], len)) + token = OPT_h; + break; + + case 'd': + if (!HDstrncmp("dims", &s[1], len)) + token = OPT_d; + break; + + case 'p': + if (!HDstrncmp("path", &s[1], len)) + token = OPT_p; + break; + case 't': + if (!HDstrncmp("type", &s[1], len)) + token = OPT_t; + break; + + case 's': + if (!HDstrncmp("size", &s[1], len)) + token = OPT_s; + break; + } + if (token == ERR) + (void) fprintf(stderr, err1, s); + } + else { /* filename */ + token = FILNAME; + } + return (token); +} /*------------------------------------------------------------------------- * Function: processDataFile @@ -282,501 +289,440 @@ gtoken(char *s) *------------------------------------------------------------------------- */ -static int -processDataFile(char *infile, struct Input *in, FILE **strm, hid_t file_id) +static int processDataFile(char *infile, struct Input *in, hid_t file_id) { - const char *err1 = "Unable to open the input file %s for reading.\n"; - const char *err2 = "Error in allocating integer data storage.\n"; - const char *err3 = "Error in allocating floating-point data storage.\n"; - const char *err4 = "Error in reading integer data.\n"; - const char *err5 = "Error in reading floating-point data.\n"; - const char *err6 = "Error in allocating unsigned integer data storage.\n"; - const char *err7 = "Error in reading unsigned integer data.\n"; - const char *err10 = "Unrecognized input class type.\n"; - const char *err11 = "Error in reading string data.\n"; - - /*------------------------------------------------------------------------- - * special case for opening binary classes in WIN32 - * "FP" denotes a floating point binary file, - * "IN" denotes a signed integer binary file, - * "UIN" denotes an unsigned integer binary file, - *------------------------------------------------------------------------- - */ - if ( in->inputClass == 4 /* "IN" */ || - in->inputClass == 3 /* "FP" */ || - in->inputClass == 7 /* "UIN" */ - - ) - { + FILE *strm; + const char *err1 = "Unable to open the input file %s for reading.\n"; + const char *err2 = "Error in allocating integer data storage.\n"; + const char *err3 = "Error in allocating floating-point data storage.\n"; + const char *err4 = "Error in reading integer data.\n"; + const char *err5 = "Error in reading floating-point data.\n"; + const char *err6 = "Error in allocating unsigned integer data storage.\n"; + const char *err7 = "Error in reading unsigned integer data.\n"; + const char *err10 = "Unrecognized input class type.\n"; + const char *err11 = "Error in reading string data.\n"; + + /*------------------------------------------------------------------------- + * special case for opening binary classes in WIN32 + * "FP" denotes a floating point binary file, + * "IN" denotes a signed integer binary file, + * "UIN" denotes an unsigned integer binary file, + *------------------------------------------------------------------------- + */ + if (in->inputClass == 4 /* "IN" */|| in->inputClass == 3 /* "FP" */|| in->inputClass == 7 /* "UIN" */) { #ifdef WIN32 - if ((*strm = fopen(infile, "rb")) == NULL) - { - (void) fprintf(stderr, err1, infile); - return(-1); - } + if ((strm = fopen(infile, "rb")) == NULL) { + (void) fprintf(stderr, err1, infile); + return(-1); + } #else - if ((*strm = fopen(infile, "r")) == NULL) - { - (void) fprintf(stderr, err1, infile); - return(-1); - } + if ((strm = fopen(infile, "r")) == NULL) { + (void) fprintf(stderr, err1, infile); + return (-1); + } #endif - } - /*------------------------------------------------------------------------- - * if the input class is not binary, just use "r" - *------------------------------------------------------------------------- - */ - else - { - if ((*strm = fopen(infile, "r")) == NULL) - { - (void) fprintf(stderr, err1, infile); - return(-1); - } - } - - + } + /*------------------------------------------------------------------------- + * if the input class is not binary, just use "r" + *------------------------------------------------------------------------- + */ + else { + if ((strm = fopen(infile, "r")) == NULL) { + (void) fprintf(stderr, err1, infile); + return (-1); + } + } - switch(in->inputClass) - { + switch (in->inputClass) { case 0: /* TEXTIN */ case 4: /* IN */ - if (allocateIntegerStorage(in) == -1) - { - (void) fprintf(stderr, err2, infile); - return(-1); - } - - if (readIntegerData(strm, in) == -1) - { - (void) fprintf(stderr, err4, infile); - return(-1); - } - break; + if (allocateIntegerStorage(in) == -1) { + (void) fprintf(stderr, err2, infile); + fclose(strm); + return (-1); + } + + if (readIntegerData(strm, in) == -1) { + (void) fprintf(stderr, err4, infile); + fclose(strm); + return (-1); + } + break; case 1: /* TEXTFP */ case 2: /* TEXTFPE */ case 3: /* FP */ - if (allocateFloatStorage(in) == -1) - { - (void) fprintf(stderr, err3, infile); - return(-1); + if (allocateFloatStorage(in) == -1) { + (void) fprintf(stderr, err3, infile); + fclose(strm); + return (-1); - } + } - if (readFloatData(strm, in) == -1) - { - (void) fprintf(stderr, err5, infile); - return(-1); - } - break; + if (readFloatData(strm, in) == -1) { + (void) fprintf(stderr, err5, infile); + fclose(strm); + return (-1); + } + break; case 5: /* STR */ - if (processStrData(strm, in, file_id) == -1) - { + if (processStrData(strm, in, file_id) == -1) { (void) fprintf(stderr, err11, infile); - return(-1); + fclose(strm); + return (-1); } - - - break; + break; case 6: /* TEXTUIN */ case 7: /* UIN */ - if (allocateUIntegerStorage(in) == -1) - { - (void) fprintf(stderr, err6, infile); - return(-1); - } - if (readUIntegerData(strm, in) == -1) - { - (void) fprintf(stderr, err7, infile); - return(-1); - } - break; + if (allocateUIntegerStorage(in) == -1) { + (void) fprintf(stderr, err6, infile); + fclose(strm); + return (-1); + } + if (readUIntegerData(strm, in) == -1) { + (void) fprintf(stderr, err7, infile); + fclose(strm); + return (-1); + } + break; default: (void) fprintf(stderr, "%s", err10); - return(-1); - } - return (0); + fclose(strm); + return (-1); + } + fclose(strm); + return (0); } -static int -readIntegerData(FILE **strm, struct Input *in) +static int readIntegerData(FILE *strm, struct Input *in) { - H5DT_INT8 *in08; - H5DT_INT16 *in16, temp; - H5DT_INT32 *in32; + H5DT_INT8 *in08; + H5DT_INT16 *in16; + H5DT_INT16 temp; + H5DT_INT32 *in32; #ifndef WIN32 - H5DT_INT64 *in64; - char buffer[256]; + H5DT_INT64 *in64; + char buffer[256]; #endif - hsize_t len=1; - hsize_t i; - int j; + hsize_t len = 1; + hsize_t i; + int j; - const char *err1 = "Unable to get integer value from file.\n"; - const char *err2 = "Unrecognized input class type.\n"; - const char *err3 = "Invalid input size.\n"; + const char *err1 = "Unable to get integer value from file.\n"; + const char *err2 = "Unrecognized input class type.\n"; + const char *err3 = "Invalid input size.\n"; - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; - switch(in->inputSize) - { + switch (in->inputSize) { case 8: - switch(in->inputClass) - { + switch (in->inputClass) { case 0: /* TEXTIN */ - in08 = (H5DT_INT8 *) in->data; - for (i = 0; i < len; i++, in08++) - { - if (fscanf(*strm, "%hd", &temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + in08 = (H5DT_INT8 *) in->data; + for (i = 0; i < len; i++, in08++) { + if (fscanf(strm, "%hd", &temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + (*in08) = (H5DT_INT8) temp; } - (*in08) = (H5DT_INT8)temp; - } - break; + break; case 4: /* IN */ - in08 = (H5DT_INT8 *) in->data; - for (i = 0; i < len; i++, in08++) - { - if (fread((char *) in08, sizeof(H5DT_INT8), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + in08 = (H5DT_INT8 *) in->data; + for (i = 0; i < len; i++, in08++) { + if (fread((char *) in08, sizeof(H5DT_INT8), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; case 16: - in16 = (H5DT_INT16 *) in->data; - switch(in->inputClass) - { + in16 = (H5DT_INT16 *) in->data; + switch (in->inputClass) { case 0: /* TEXTIN */ - for (i = 0; i < len; i++, in16++) - { - if (fscanf(*strm, "%hd", in16) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in16++) { + if (fscanf(strm, "%hd", in16) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - in16 = (H5DT_INT16 *) in->data; - break; + in16 = (H5DT_INT16 *) in->data; + break; case 4: /* IN */ - for (i = 0; i < len; i++, in16++) - { - if (fread((char *) in16, sizeof(H5DT_INT16), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in16++) { + if (fread((char *) in16, sizeof(H5DT_INT16), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; case 32: - in32 = (H5DT_INT32 *) in->data; - switch(in->inputClass) - { + in32 = (H5DT_INT32 *) in->data; + switch (in->inputClass) { case 0: /* TEXTIN */ - for (i = 0; i < len; i++, in32++) - { - if (fscanf(*strm, "%d", in32) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in32++) { + if (fscanf(strm, "%d", in32) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; case 4: /* IN */ - for (i = 0; i < len; i++, in32++) - { - if (fread((char *) in32, sizeof(H5DT_INT32), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in32++) { + if (fread((char *) in32, sizeof(H5DT_INT32), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; #ifndef _WIN32 case 64: - in64 = (H5DT_INT64 *) in->data; - switch(in->inputClass) - { + in64 = (H5DT_INT64 *) in->data; + switch (in->inputClass) { case 0: /* TEXTIN */ - for (i = 0; i < len; i++, in64++) - { - if (fscanf(*strm, "%s", buffer) < 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in64++) { + if (fscanf(strm, "%s", buffer) < 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + *in64 = (H5DT_INT64) HDstrtoll(buffer, NULL, 10); } - *in64 = (H5DT_INT64) HDstrtoll(buffer, NULL, 10); - } - break; + break; case 4: /* IN */ - for (i = 0; i < len; i++, in64++) - { - if (fread((char *) in64, sizeof(H5DT_INT64), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in64++) { + if (fread((char *) in64, sizeof(H5DT_INT64), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; #endif /* ifndef _WIN32 */ default: - (void) fprintf(stderr, "%s", err3); - break; - } - return(0); + (void) fprintf(stderr, "%s", err3); + break; + } + return (0); } -static int -readUIntegerData(FILE **strm, struct Input *in) +static int readUIntegerData(FILE *strm, struct Input *in) { - H5DT_UINT8 *in08; - H5DT_UINT16 *in16, temp; - H5DT_UINT32 *in32; + H5DT_UINT8 *in08; + H5DT_UINT16 *in16; + H5DT_UINT16 temp; + H5DT_UINT32 *in32; #ifndef _WIN32 - H5DT_UINT64 *in64; - char buffer[256]; + H5DT_UINT64 *in64; + char buffer[256]; #endif - hsize_t len=1; - hsize_t i; - int j; - const char *err1 = "Unable to get unsigned integer value from file.\n"; - const char *err2 = "Unrecognized input class type.\n"; - const char *err3 = "Invalid input size.\n"; - - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; - - switch(in->inputSize) - { + hsize_t len = 1; + hsize_t i; + int j; + const char *err1 = "Unable to get unsigned integer value from file.\n"; + const char *err2 = "Unrecognized input class type.\n"; + const char *err3 = "Invalid input size.\n"; + + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; + + switch (in->inputSize) { case 8: - switch(in->inputClass) - { + switch (in->inputClass) { case 6: /* TEXTUIN */ - in08 = (H5DT_UINT8 *) in->data; - for (i = 0; i < len; i++, in08++) - { - if (fscanf(*strm, "%hu", &temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + in08 = (H5DT_UINT8 *) in->data; + for (i = 0; i < len; i++, in08++) { + if (fscanf(strm, "%hu", &temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + (*in08) = (H5DT_UINT8) temp; } - (*in08) = (H5DT_UINT8)temp; - } - break; + break; case 7: /* UIN */ - in08 = (H5DT_UINT8 *) in->data; - for (i = 0; i < len; i++, in08++) - { - if (fread((char *) in08, sizeof(H5DT_UINT8), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + in08 = (H5DT_UINT8 *) in->data; + for (i = 0; i < len; i++, in08++) { + if (fread((char *) in08, sizeof(H5DT_UINT8), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; case 16: - in16 = (H5DT_UINT16 *) in->data; - switch(in->inputClass) - { + in16 = (H5DT_UINT16 *) in->data; + switch (in->inputClass) { case 6: /* TEXTUIN */ - for (i = 0; i < len; i++, in16++) - { - if (fscanf(*strm, "%hu", in16) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in16++) { + if (fscanf(strm, "%hu", in16) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; case 7: /* UIN */ - for (i = 0; i < len; i++, in16++) - { - if (fread((char *) in16, sizeof(H5DT_UINT16), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in16++) { + if (fread((char *) in16, sizeof(H5DT_UINT16), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; case 32: - in32 = (H5DT_UINT32 *) in->data; - switch(in->inputClass) - { + in32 = (H5DT_UINT32 *) in->data; + switch (in->inputClass) { case 6: /* TEXTUIN */ - for (i = 0; i < len; i++, in32++) - { - if (fscanf(*strm, "%u", in32) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in32++) { + if (fscanf(strm, "%u", in32) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; case 7: /* UIN */ - for (i = 0; i < len; i++, in32++) - { - if (fread((char *) in32, sizeof(H5DT_UINT32), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in32++) { + if (fread((char *) in32, sizeof(H5DT_UINT32), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; #ifndef _WIN32 case 64: - in64 = (H5DT_UINT64 *) in->data; - switch(in->inputClass) - { + in64 = (H5DT_UINT64 *) in->data; + switch (in->inputClass) { case 6: /* TEXTUIN */ - for (i = 0; i < len; i++, in64++) - { - if (fscanf(*strm, "%s", buffer) < 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in64++) { + if (fscanf(strm, "%s", buffer) < 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + *in64 = (H5DT_UINT64) HDstrtoll(buffer, NULL, 10); } - *in64 = (H5DT_UINT64) HDstrtoll(buffer, NULL, 10); - } - break; + break; case 7: /* UIN */ - for (i = 0; i < len; i++, in64++) - { - if (fread((char *) in64, sizeof(H5DT_UINT64), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, in64++) { + if (fread((char *) in64, sizeof(H5DT_UINT64), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; #endif /* ifndef _WIN32 */ default: - (void) fprintf(stderr, "%s", err3); - break; - } - return(0); + (void) fprintf(stderr, "%s", err3); + break; + } + return (0); } -static int -readFloatData(FILE **strm, struct Input *in) +static int readFloatData(FILE *strm, struct Input *in) { - H5DT_FLOAT32 *fp32; - H5DT_FLOAT64 *fp64; + H5DT_FLOAT32 *fp32; + H5DT_FLOAT64 *fp64; - hsize_t len=1; - hsize_t i; - int j; - const char *err1 = "Unable to get integer value from file.\n"; - const char *err2 = "Unrecognized input class type.\n"; - const char *err3 = "Invalid input size type.\n"; + hsize_t len = 1; + hsize_t i; + int j; + const char *err1 = "Unable to get integer value from file.\n"; + const char *err2 = "Unrecognized input class type.\n"; + const char *err3 = "Invalid input size type.\n"; - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; - switch(in->inputSize) - { + switch (in->inputSize) { case 32: - fp32 = (H5DT_FLOAT32 *) in->data; - switch(in->inputClass) - { + fp32 = (H5DT_FLOAT32 *) in->data; + switch (in->inputClass) { case 1: /* TEXTFP */ - for (i = 0; i < len; i++, fp32++) - { - if (fscanf(*strm, "%f", fp32) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, fp32++) { + if (fscanf(strm, "%f", fp32) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - fp32 = (H5DT_FLOAT32 *) in->data; - break; + fp32 = (H5DT_FLOAT32 *) in->data; + break; - /* same as TEXTFP */ + /* same as TEXTFP */ case 2: /*TEXTFPE */ - for (i = 0; i < len; i++, fp32++) - { - if (fscanf(*strm, "%f", fp32) != 1) - { + for (i = 0; i < len; i++, fp32++) { + if (fscanf(strm, "%f", fp32) != 1) { (void) fprintf(stderr, "%s", err1); return (-1); } @@ -786,46 +732,39 @@ readFloatData(FILE **strm, struct Input *in) break; case 3: /* FP */ - for (i = 0; i < len; i++, fp32++) - { - if (fread((char *) fp32, sizeof(H5DT_FLOAT32), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, fp32++) { + if (fread((char *) fp32, sizeof(H5DT_FLOAT32), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; case 64: - fp64 = (H5DT_FLOAT64 *) in->data; - switch(in->inputClass) - { + fp64 = (H5DT_FLOAT64 *) in->data; + switch (in->inputClass) { case 1: /* TEXTFP */ - for (i = 0; i < len; i++, fp64++) - { - if (fscanf(*strm, "%lf", fp64) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, fp64++) { + if (fscanf(strm, "%lf", fp64) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - fp64 = (H5DT_FLOAT64 *) in->data; - break; + fp64 = (H5DT_FLOAT64 *) in->data; + break; - /* same as TEXTFP */ + /* same as TEXTFP */ case 2: /*TEXTFPE */ - for (i = 0; i < len; i++, fp64++) - { - if (fscanf(*strm, "%lf", fp64) != 1) - { + for (i = 0; i < len; i++, fp64++) { + if (fscanf(strm, "%lf", fp64) != 1) { (void) fprintf(stderr, "%s", err1); return (-1); } @@ -835,31 +774,27 @@ readFloatData(FILE **strm, struct Input *in) break; case 3: /* FP */ - for (i = 0; i < len; i++, fp64++) - { - if (fread((char *) fp64, sizeof(H5DT_FLOAT64), 1, *strm) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); + for (i = 0; i < len; i++, fp64++) { + if (fread((char *) fp64, sizeof(H5DT_FLOAT64), 1, strm) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } } - } - break; + break; default: - (void) fprintf(stderr, "%s", err2); - return (-1); - } - break; + (void) fprintf(stderr, "%s", err2); + return (-1); + } + break; default: - (void) fprintf(stderr, "%s", err3); - break; - } - return(0); + (void) fprintf(stderr, "%s", err3); + break; + } + return (0); } - - /*------------------------------------------------------------------------- * Function: processStrData * @@ -874,63 +809,66 @@ readFloatData(FILE **strm, struct Input *in) * *------------------------------------------------------------------------- */ -static int -processStrData(FILE **strm, struct Input *in, hid_t file_id) +static int processStrData(FILE *strm, struct Input *in, hid_t file_id) { - hid_t group_id, dset_id, space_id, mspace_id, type_id, handle; + hid_t group_id; + hid_t dset_id; + hid_t space_id; + hid_t mspace_id; + hid_t type_id; + hid_t handle; hsize_t dims[1]; char str[1024]; char c; - int i = 0, j, nlines = 0, line; + int i = 0; + int j; + int nlines = 0; + int line; -/*------------------------------------------------------------------------- - * get number of lines in the input file - *------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------- + * get number of lines in the input file + *------------------------------------------------------------------------- + */ - while ( !feof( *strm ) ) - { - c = fgetc( *strm ); + while (!feof(strm)) { + c = fgetc(strm); - if ( c == 10 ) /* eol */ - { + if (c == 10) { /* eol */ nlines++; - } } - if ( !nlines ) + if (!nlines) return 0; /* number of records */ dims[0] = nlines; /* rewind */ - fseek(*strm,0L,0); + fseek(strm, 0L, 0); -/*------------------------------------------------------------------------- - * read file again and generate an HDF5 dataset - *------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------- + * read file again and generate an HDF5 dataset + *------------------------------------------------------------------------- + */ - if (( type_id = H5Tcopy(H5T_C_S1)) < 0 ) + if ((type_id = H5Tcopy(H5T_C_S1)) < 0) goto out; - if ( H5Tset_size (type_id,H5T_VARIABLE) < 0 ) + if (H5Tset_size(type_id, H5T_VARIABLE) < 0) goto out; /* disable error reporting */ - H5E_BEGIN_TRY + H5E_BEGIN_TRY { - /* create parent groups */ - if(in->path.count > 1) { + if (in->path.count > 1) { j = 0; handle = file_id; - while(j < in->path.count - 1) { - if((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) { + while (j < in->path.count - 1) { + if ((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) { group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - for(; j < in->path.count - 1; j++) + for (; j < in->path.count - 1; j++) group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); handle = group_id; break; @@ -945,1446 +883,1305 @@ processStrData(FILE **strm, struct Input *in, hid_t file_id) } /*enable error reporting */ - } H5E_END_TRY; + } + H5E_END_TRY; - if((space_id = H5Screate_simple(1, dims, NULL)) < 0) + if ((space_id = H5Screate_simple(1, dims, NULL)) < 0) goto out; - if((mspace_id = H5Screate(H5S_SCALAR)) < 0) + if ((mspace_id = H5Screate(H5S_SCALAR)) < 0) goto out; - if((dset_id = H5Dcreate2(handle, in->path.group[j], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((dset_id = H5Dcreate2(handle, in->path.group[j], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; line = 0; - while(!feof(*strm)) { - c = fgetc(*strm); + while (!feof(strm)) { + c = fgetc(strm); str[i] = c; i++; - if(c == 10) /* eol */ - { - char *str2 = str; - hid_t fspace_id; + if (c == 10) { /* eol */ + char *str2 = str; + hid_t fspace_id; hsize_t start[1]; hsize_t count[1] = { 1 }; - str[ i-1 ] = '\0'; /* terminate string */ + str[i - 1] = '\0'; /* terminate string */ - if (( fspace_id = H5Dget_space (dset_id)) < 0 ) + if ((fspace_id = H5Dget_space(dset_id)) < 0) goto out; - start[0] = line ++ ; + start[0] = line++; - if ( H5Sselect_hyperslab(fspace_id,H5S_SELECT_SET,start,NULL,count,NULL) < 0 ) + if (H5Sselect_hyperslab(fspace_id, H5S_SELECT_SET, start, NULL, count, NULL) < 0) goto out; - if ( H5Dwrite(dset_id,type_id,mspace_id,fspace_id,H5P_DEFAULT, &str2 ) < 0 ) + if (H5Dwrite(dset_id, type_id, mspace_id, fspace_id, H5P_DEFAULT, &str2) < 0) goto out; - if ( H5Sclose(fspace_id) < 0 ) + if (H5Sclose(fspace_id) < 0) goto out; i = 0; - str[ 0 ] = '\0'; + str[0] = '\0'; } } - /* close */ H5Dclose(dset_id); H5Sclose(space_id); H5Sclose(mspace_id); H5Tclose(type_id); - return(0); + return (0); out: return (-1); } - -static int -allocateIntegerStorage(struct Input *in) +static int allocateIntegerStorage(struct Input *in) { - hsize_t len=1; - int j; - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "Invalid storage size for integer input data.\n"; + hsize_t len = 1; + int j; + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "Invalid storage size for integer input data.\n"; - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; - switch(in->inputSize) - { + switch (in->inputSize) { case 8: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT8))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT8))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 16: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT16))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT16))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 32: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT32))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT32))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 64: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT64))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_INT64))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; default: - (void) fprintf(stderr, "%s", err2); - break; - } - return(0); + (void) fprintf(stderr, "%s", err2); + break; + } + return (0); } static int allocateUIntegerStorage(struct Input *in) { - hsize_t len=1; - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "Invalid storage size for unsigned integer input data.\n"; - int j; + hsize_t len = 1; + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "Invalid storage size for unsigned integer input data.\n"; + int j; - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; - switch(in->inputSize) - { + switch (in->inputSize) { case 8: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT8))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT8))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 16: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT16))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT16))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 32: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT32))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT32))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 64: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT64))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_UINT64))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; default: - (void) fprintf(stderr, "%s", err2); - break; - } - return(0); + (void) fprintf(stderr, "%s", err2); + break; + } + return (0); } -static int -allocateFloatStorage(struct Input *in) +static int allocateFloatStorage(struct Input *in) { - hsize_t len = 1; - int j; - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "Invalid storage size for float input data.\n"; + hsize_t len = 1; + int j; + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "Invalid storage size for float input data.\n"; - for (j=0; j<in->rank;j++) - len *= in->sizeOfDimension[j]; + for (j = 0; j < in->rank; j++) + len *= in->sizeOfDimension[j]; - switch(in->inputSize) - { + switch (in->inputSize) { case 32: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT32))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT32))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; case 64: - if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT64))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - break; + if ((in->data = (VOIDP) HDmalloc((size_t) len * sizeof(H5DT_FLOAT64))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + break; default: - (void) fprintf(stderr, "%s", err2); - break; - } - return(0); + (void) fprintf(stderr, "%s", err2); + break; + } + return (0); } -static int -processConfigurationFile(char *infile, struct Input *in, FILE **strm) +static int processConfigurationFile(char *infile, struct Input *in) { - char key[255]; - int kindex; - char temp[255]; - int ival; - - const char *err1 = "Unable to open the configuration file: %s for reading.\n"; - const char *err2 = "Unknown keyword in configuration file: %s\n"; - const char *err3a = "PATH keyword appears twice in %s.\n"; - const char *err3b = "Error in parsing the path information from %s.\n"; - const char *err4a = "INPUT-CLASS keyword appears twice in %s.\n"; - const char *err4b = "Error in retrieving the input class from %s.\n"; - const char *err5a = "INPUT-SIZE keyword appears twice in %s.\n"; - const char *err5b = "Error in retrieving the input size from %s.\n"; - const char *err6a = "RANK keyword appears twice in %s.\n"; - const char *err6b = "Error in retrieving the rank from %s.\n"; - const char *err7a = "DIMENSION-SIZES keyword appears twice in %s.\n"; - const char *err7b = "DIMENSION-SIZES cannot appear before RANK is provided.\n"; - const char *err7c = "Error in retrieving the dimension sizes from %s.\n"; - const char *err8a = "OUTPUT-CLASS keyword appears twice in %s.\n"; - const char *err8b = "Error in retrieving the output class from %s.\n"; - const char *err9a = "OUTPUT-SIZE keyword appears twice in %s.\n"; - const char *err9b = "Error in retrieving the output size from %s.\n"; - const char *err10a = "OUTPUT-ARCHITECTURE keyword appears twice in %s.\n"; - const char *err10b = "Error in retrieving the output architecture from %s.\n"; - const char *err11a = "OUTPUT-BYTE-ORDER keyword appears twice in %s.\n"; - const char *err11b = "Error in retrieving the output byte order from %s.\n"; - const char *err12a = "CHUNKED-DIMENSION-SIZES keyword appears twice in %s.\n"; - const char *err12b = "CHUNKED-DIMENSION-SIZES cannot appear before DIMENSION-SIZES are provided.\n"; - const char *err12c = "Error in retrieving the chunked dimension sizes from %s.\n"; - const char *err13a = "COMPRESSION-TYPE keyword appears twice in %s.\n"; - const char *err13b = "Error in retrieving the compression type from %s.\n"; - const char *err14a = "COMPRESSION-PARAM keyword appears twice in %s.\n"; - const char *err14b = "Error in retrieving the compression parameter from %s.\n"; - const char *err15a = "EXTERNAL-STORAGE keyword appears twice in %s.\n"; - const char *err15b = "Error in retrieving the external storage paramters from %s.\n"; - const char *err16a = "MAXIMUM-DIMENSIONS keyword appears twice in %s.\n"; - const char *err16b = "MAXIMUM-DIMENSIONS cannot appear before DIMENSION-SIZES are provided.\n"; - const char *err16c = "Error in retrieving the maximum dimension sizes from %s.\n"; - const char *err17 = "Configuration parameters are invalid in %s.\n"; - const char *err18 = "Unable to get string value.\n"; - const char *err19 = "Unable to get integer value.\n"; - - /* create vector to map which keywords have been found - check vector after each keyword to check for violation - at the end check vector to see if required fields have been provided - process the output file according to the options - */ - - if ((*strm = fopen(infile, "r")) == NULL) - { - (void) fprintf(stderr, err1, infile); - return (-1); - } - - while (fscanf(*strm, "%s", key) == 1) - { - if ((kindex = mapKeywordToIndex(key)) == -1) - { - (void) fprintf(stderr, err2, infile); - return (-1); + FILE *strm; + char key[255]; + int kindex; + char temp[255]; + int ival; + + const char *err1 = "Unable to open the configuration file: %s for reading.\n"; + const char *err2 = "Unknown keyword in configuration file: %s\n"; + const char *err3a = "PATH keyword appears twice in %s.\n"; + const char *err3b = "Error in parsing the path information from %s.\n"; + const char *err4a = "INPUT-CLASS keyword appears twice in %s.\n"; + const char *err4b = "Error in retrieving the input class from %s.\n"; + const char *err5a = "INPUT-SIZE keyword appears twice in %s.\n"; + const char *err5b = "Error in retrieving the input size from %s.\n"; + const char *err6a = "RANK keyword appears twice in %s.\n"; + const char *err6b = "Error in retrieving the rank from %s.\n"; + const char *err7a = "DIMENSION-SIZES keyword appears twice in %s.\n"; + const char *err7b = "DIMENSION-SIZES cannot appear before RANK is provided.\n"; + const char *err7c = "Error in retrieving the dimension sizes from %s.\n"; + const char *err8a = "OUTPUT-CLASS keyword appears twice in %s.\n"; + const char *err8b = "Error in retrieving the output class from %s.\n"; + const char *err9a = "OUTPUT-SIZE keyword appears twice in %s.\n"; + const char *err9b = "Error in retrieving the output size from %s.\n"; + const char *err10a = "OUTPUT-ARCHITECTURE keyword appears twice in %s.\n"; + const char *err10b = "Error in retrieving the output architecture from %s.\n"; + const char *err11a = "OUTPUT-BYTE-ORDER keyword appears twice in %s.\n"; + const char *err11b = "Error in retrieving the output byte order from %s.\n"; + const char *err12a = "CHUNKED-DIMENSION-SIZES keyword appears twice in %s.\n"; + const char *err12b = "CHUNKED-DIMENSION-SIZES cannot appear before DIMENSION-SIZES are provided.\n"; + const char *err12c = "Error in retrieving the chunked dimension sizes from %s.\n"; + const char *err13a = "COMPRESSION-TYPE keyword appears twice in %s.\n"; + const char *err13b = "Error in retrieving the compression type from %s.\n"; + const char *err14a = "COMPRESSION-PARAM keyword appears twice in %s.\n"; + const char *err14b = "Error in retrieving the compression parameter from %s.\n"; + const char *err15a = "EXTERNAL-STORAGE keyword appears twice in %s.\n"; + const char *err15b = "Error in retrieving the external storage paramters from %s.\n"; + const char *err16a = "MAXIMUM-DIMENSIONS keyword appears twice in %s.\n"; + const char *err16b = "MAXIMUM-DIMENSIONS cannot appear before DIMENSION-SIZES are provided.\n"; + const char *err16c = "Error in retrieving the maximum dimension sizes from %s.\n"; + const char *err17 = "Configuration parameters are invalid in %s.\n"; + const char *err18 = "Unable to get string value.\n"; + const char *err19 = "Unable to get integer value.\n"; + + /* create vector to map which keywords have been found + check vector after each keyword to check for violation + at the end check vector to see if required fields have been provided + process the output file according to the options + */ + + if ((strm = fopen(infile, "r")) == NULL) { + (void) fprintf(stderr, err1, infile); + return (-1); } - switch (kindex) - { - case 0: /* PATH */ - if (in->configOptionVector[PATH] == 1) - { - (void) fprintf(stderr, err3a, infile); - return (-1); - } - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err18); - return (-1); - } - if (parsePathInfo(&in->path, temp) == -1) - { - (void) fprintf(stderr, err3b, infile); - return (-1); - } - in->configOptionVector[PATH] = 1; - break; - - case 1: /* INPUT-CLASS */ - if (in->configOptionVector[INPUT_CLASS] == 1) - { - (void) fprintf(stderr, err4a, infile); - return (-1); - } - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err18); - return (-1); - } - if (getInputClass(in, temp) == -1) - { - (void) fprintf(stderr, err4b, infile); - return (-1); + while (fscanf(strm, "%s", key) == 1) { + if ((kindex = mapKeywordToIndex(key)) == -1) { + (void) fprintf(stderr, err2, infile); + fclose(strm); + return (-1); } + switch (kindex) { + case 0: /* PATH */ + if (in->configOptionVector[PATH] == 1) { + (void) fprintf(stderr, err3a, infile); + fclose(strm); + return (-1); + } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err18); + fclose(strm); + return (-1); + } + if (parsePathInfo(&in->path, temp) == -1) { + (void) fprintf(stderr, err3b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[PATH] = 1; + break; - in->configOptionVector[INPUT_CLASS] = 1; - - /*set default value for output-class */ - if (in->configOptionVector[OUTPUT_CLASS] == 0) - { - if (in->inputClass == 0 || in->inputClass == 4) - in->outputClass = 0; - if (in->inputClass == 1 || in->inputClass == 2 || in->inputClass == 3) - in->outputClass = 1; - if (in->inputClass == 6 || in->inputClass == 7) - in->outputClass = 2; - } - break; + case 1: /* INPUT-CLASS */ + if (in->configOptionVector[INPUT_CLASS] == 1) { + (void) fprintf(stderr, err4a, infile); + fclose(strm); + return (-1); + } - case 2: /* INPUT-SIZE */ - if (in->configOptionVector[INPUT_SIZE] == 1) - { - (void) fprintf(stderr, err5a, infile); - return (-1); - } - if (fscanf(*strm, "%d", (&ival)) != 1) - { - (void) fprintf(stderr, "%s", err19); - return (-1); - } - if (getInputSize(in, ival) == -1) - { - (void) fprintf(stderr, err5b, infile); - return (-1); - } - in->configOptionVector[INPUT_SIZE] = 1; - - /*set default value for output-size */ - if (in->configOptionVector[OUTPUT_SIZE] == 0) - in->outputSize = in->inputSize; - break; - - case 3: /* RANK */ - if (in->configOptionVector[RANK] == 1) - { - (void) fprintf(stderr, err6a, infile); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err18); + fclose(strm); + return (-1); + } + if (getInputClass(in, temp) == -1) { + (void) fprintf(stderr, err4b, infile); + fclose(strm); + return (-1); + } - if (getRank(in, strm) == -1) - { - (void) fprintf(stderr, err6b, infile); - return (-1); - } - in->configOptionVector[RANK] = 1; - break; - - case 4: /* DIMENSION-SIZES */ - if (in->configOptionVector[DIM] == 1) - { - (void) fprintf(stderr, err7a, infile); - return (-1); - } + in->configOptionVector[INPUT_CLASS] = 1; + + /*set default value for output-class */ + if (in->configOptionVector[OUTPUT_CLASS] == 0) { + if (in->inputClass == 0 || in->inputClass == 4) + in->outputClass = 0; + if (in->inputClass == 1 || in->inputClass == 2 + || in->inputClass == 3) + in->outputClass = 1; + if (in->inputClass == 6 || in->inputClass == 7) + in->outputClass = 2; + } + break; - if (in->configOptionVector[RANK] == 0) - { - (void) fprintf(stderr, err7b, infile); - return (-1); - } - if (getDimensionSizes(in, strm) == -1) - { - (void) fprintf(stderr, err7c, infile); - return (-1); - } - in->configOptionVector[DIM] = 1; - break; - - case 5: /* OUTPUT-CLASS */ - if (in->configOptionVector[OUTPUT_CLASS] == 1) - { - (void) fprintf(stderr, err8a, infile); - return (-1); - } + case 2: /* INPUT-SIZE */ + if (in->configOptionVector[INPUT_SIZE] == 1) { + (void) fprintf(stderr, err5a, infile); + fclose(strm); + return (-1); + } + if (fscanf(strm, "%d", (&ival)) != 1) { + (void) fprintf(stderr, "%s", err19); + fclose(strm); + return (-1); + } + if (getInputSize(in, ival) == -1) { + (void) fprintf(stderr, err5b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[INPUT_SIZE] = 1; - if (getOutputClass(in, strm) == -1) - { - (void) fprintf(stderr, err8b, infile); - return (-1); - } - in->configOptionVector[OUTPUT_CLASS] = 1; - break; - - case 6: /* OUTPUT-SIZE */ - if (in->configOptionVector[OUTPUT_SIZE] == 1) - { - (void) fprintf(stderr, err9a, infile); - return (-1); - } + /*set default value for output-size */ + if (in->configOptionVector[OUTPUT_SIZE] == 0) + in->outputSize = in->inputSize; + break; - if (getOutputSize(in, strm) == -1) - { - (void) fprintf(stderr, err9b, infile); - return (-1); - } - in->configOptionVector[OUTPUT_SIZE] = 1; - break; - - case 7: /* OUTPUT-ARCHITECTURE */ - if (in->configOptionVector[OUTPUT_ARCH] == 1) - { - (void) fprintf(stderr, err10a, infile); - return (-1); - } + case 3: /* RANK */ + if (in->configOptionVector[RANK] == 1) { + (void) fprintf(stderr, err6a, infile); + fclose(strm); + return (-1); + } - if (getOutputArchitecture(in, strm) == -1) - { - (void) fprintf(stderr, err10b, infile); - return (-1); - } - in->configOptionVector[OUTPUT_ARCH] = 1; - break; - - case 8: /* OUTPUT-BYTE-ORDER */ - if (in->configOptionVector[OUTPUT_B_ORDER] == 1) - { - (void) fprintf(stderr, err11a, infile); - return (-1); - } + if (getRank(in, strm) == -1) { + (void) fprintf(stderr, err6b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[RANK] = 1; + break; - if (getOutputByteOrder(in, strm) == -1) - { - (void) fprintf(stderr, err11b, infile); - return (-1); - } - in->configOptionVector[OUTPUT_B_ORDER] = 1; - break; - - case 9: /* CHUNKED-DIMENSION-SIZES */ - if (in->configOptionVector[CHUNK] == 1) - { - (void) fprintf(stderr, err12a, infile); - return (-1); - } - /* cant appear before dimension sizes have been provided */ - if (in->configOptionVector[DIM] == 0) - { - (void) fprintf(stderr, err12b, infile); - return (-1); - } + case 4: /* DIMENSION-SIZES */ + if (in->configOptionVector[DIM] == 1) { + (void) fprintf(stderr, err7a, infile); + fclose(strm); + return (-1); + } - if (getChunkedDimensionSizes(in, strm) == -1) - { - (void) fprintf(stderr, err12c, infile); - return (-1); - } - in->configOptionVector[CHUNK] = 1; - break; - - case 10: /* COMPRESSION-TYPE */ - if (in->configOptionVector[COMPRESS] == 1) - { - (void) fprintf(stderr, err13a, infile); - return (-1); - } + if (in->configOptionVector[RANK] == 0) { + (void) fprintf(stderr, err7b, infile); + fclose(strm); + return (-1); + } + if (getDimensionSizes(in, strm) == -1) { + (void) fprintf(stderr, err7c, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[DIM] = 1; + break; - if (getCompressionType(in, strm) == -1) - { - (void) fprintf(stderr, err13b, infile); - return (-1); - } - in->configOptionVector[COMPRESS] = 1; + case 5: /* OUTPUT-CLASS */ + if (in->configOptionVector[OUTPUT_CLASS] == 1) { + (void) fprintf(stderr, err8a, infile); + fclose(strm); + return (-1); + } - if (in->configOptionVector[COMPRESS_PARAM] == 0) - { - if (in->compressionType == 0) - in->compressionParam = 6; /* default value if compressionType is GZIP */ - } - break; + if (getOutputClass(in, strm) == -1) { + (void) fprintf(stderr, err8b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[OUTPUT_CLASS] = 1; + break; - case 11: /* COMPRESSION-PARAM */ - if (in->configOptionVector[COMPRESS_PARAM] == 1) - { - (void) fprintf(stderr, err14a, infile); - return (-1); - } + case 6: /* OUTPUT-SIZE */ + if (in->configOptionVector[OUTPUT_SIZE] == 1) { + (void) fprintf(stderr, err9a, infile); + fclose(strm); + return (-1); + } - if (getCompressionParameter(in, strm) == -1) - { - (void) fprintf(stderr, err14b, infile); - return (-1); - } + if (getOutputSize(in, strm) == -1) { + (void) fprintf(stderr, err9b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[OUTPUT_SIZE] = 1; + break; - in->configOptionVector[COMPRESS_PARAM] = 1; + case 7: /* OUTPUT-ARCHITECTURE */ + if (in->configOptionVector[OUTPUT_ARCH] == 1) { + (void) fprintf(stderr, err10a, infile); + fclose(strm); + return (-1); + } - if (in->configOptionVector[COMPRESS] == 0) - in->compressionType = 0; + if (getOutputArchitecture(in, strm) == -1) { + (void) fprintf(stderr, err10b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[OUTPUT_ARCH] = 1; + break; + case 8: /* OUTPUT-BYTE-ORDER */ + if (in->configOptionVector[OUTPUT_B_ORDER] == 1) { + (void) fprintf(stderr, err11a, infile); + fclose(strm); + return (-1); + } - break; + if (getOutputByteOrder(in, strm) == -1) { + (void) fprintf(stderr, err11b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[OUTPUT_B_ORDER] = 1; + break; - case 12: /* EXTERNAL-STORAGE */ - if (in->configOptionVector[EXTERNAL] == 1) - { - (void) fprintf(stderr, err15a, infile); - return (-1); - } + case 9: /* CHUNKED-DIMENSION-SIZES */ + if (in->configOptionVector[CHUNK] == 1) { + (void) fprintf(stderr, err12a, infile); + fclose(strm); + return (-1); + } + /* cant appear before dimension sizes have been provided */ + if (in->configOptionVector[DIM] == 0) { + (void) fprintf(stderr, err12b, infile); + fclose(strm); + return (-1); + } - if (getExternalFilename(in, strm) == -1) - { - (void) fprintf(stderr, err15b, infile); - return (-1); - } - in->configOptionVector[EXTERNAL] = 1; - break; - - case 13: /* MAXIMUM-DIMENSIONS */ - if (in->configOptionVector[EXTEND] == 1) - { - (void) fprintf(stderr, err16a, infile); - return (-1); - } - /* cant appear before dimension sizes have been provided */ - if (in->configOptionVector[DIM] == 0) - { - (void) fprintf(stderr, err16b, infile); - return (-1); - } - if (getMaximumDimensionSizes(in, strm) == -1) - { - (void) fprintf(stderr, err16c, infile); - return (-1); - } - in->configOptionVector[EXTEND] = 1; - break; + if (getChunkedDimensionSizes(in, strm) == -1) { + (void) fprintf(stderr, err12c, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[CHUNK] = 1; + break; - default: - break; + case 10: /* COMPRESSION-TYPE */ + if (in->configOptionVector[COMPRESS] == 1) { + (void) fprintf(stderr, err13a, infile); + fclose(strm); + return (-1); + } + + if (getCompressionType(in, strm) == -1) { + (void) fprintf(stderr, err13b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[COMPRESS] = 1; + + if (in->configOptionVector[COMPRESS_PARAM] == 0) { + if (in->compressionType == 0) + in->compressionParam = 6; /* default value if compressionType is GZIP */ + } + break; + + case 11: /* COMPRESSION-PARAM */ + if (in->configOptionVector[COMPRESS_PARAM] == 1) { + (void) fprintf(stderr, err14a, infile); + fclose(strm); + return (-1); + } + + if (getCompressionParameter(in, strm) == -1) { + (void) fprintf(stderr, err14b, infile); + fclose(strm); + return (-1); + } + + in->configOptionVector[COMPRESS_PARAM] = 1; + + if (in->configOptionVector[COMPRESS] == 0) + in->compressionType = 0; + + break; + + case 12: /* EXTERNAL-STORAGE */ + if (in->configOptionVector[EXTERNAL] == 1) { + (void) fprintf(stderr, err15a, infile); + fclose(strm); + return (-1); + } + + if (getExternalFilename(in, strm) == -1) { + (void) fprintf(stderr, err15b, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[EXTERNAL] = 1; + break; + + case 13: /* MAXIMUM-DIMENSIONS */ + if (in->configOptionVector[EXTEND] == 1) { + (void) fprintf(stderr, err16a, infile); + fclose(strm); + return (-1); + } + /* cant appear before dimension sizes have been provided */ + if (in->configOptionVector[DIM] == 0) { + (void) fprintf(stderr, err16b, infile); + fclose(strm); + return (-1); + } + if (getMaximumDimensionSizes(in, strm) == -1) { + (void) fprintf(stderr, err16c, infile); + fclose(strm); + return (-1); + } + in->configOptionVector[EXTEND] = 1; + break; + + default: + break; + } + } + /* + check if keywords obtained are valid + if yes, return 0 else error + */ + + if (validateConfigurationParameters(in) == -1) { + (void) fprintf(stderr, err17, infile); + fclose(strm); + return (-1); } - } - /* - check if keywords obtained are valid - if yes, return 0 else error - */ - - if (validateConfigurationParameters(in) == -1) - { - (void) fprintf(stderr, err17, infile); - return (-1); - } - return (0); + fclose(strm); + return (0); } -static int -validateConfigurationParameters(struct Input * in) +static int validateConfigurationParameters(struct Input *in) { - const char *err1 = "One or more of the required fields (RANK, DIMENSION-SIZES) missing.\n"; - const char *err2 = "Cannot specify chunking or compression or extendible data sets with the external file option.\n"; - const char *err3 = "Cannot specify the compression or the extendible data sets without the chunking option.\n"; - const char *err4a = "OUTPUT-ARCHITECTURE cannot be STD if OUTPUT-CLASS is floating point (FP).\n"; - const char *err4b = "OUTPUT-ARCHITECTURE cannot be IEEE if OUTPUT-CLASS is integer (IN).\n"; - const char *err5 = "For OUTPUT-CLASS FP, valid values for OUTPUT-SIZE are (32, 64) .\n"; + const char *err1 = "One or more of the required fields (RANK, DIMENSION-SIZES) missing.\n"; + const char *err2 = "Cannot specify chunking or compression or extendible data sets with the external file option.\n"; + const char *err3 = "Cannot specify the compression or the extendible data sets without the chunking option.\n"; + const char *err4a = "OUTPUT-ARCHITECTURE cannot be STD if OUTPUT-CLASS is floating point (FP).\n"; + const char *err4b = "OUTPUT-ARCHITECTURE cannot be IEEE if OUTPUT-CLASS is integer (IN).\n"; + const char *err5 = "For OUTPUT-CLASS FP, valid values for OUTPUT-SIZE are (32, 64) .\n"; #ifdef _WIN32 - const char *err6 = "No support for reading 64-bit integer (INPUT-CLASS: IN, TEXTIN, UIN, TEXTUIN files\n"; + const char *err6 = "No support for reading 64-bit integer (INPUT-CLASS: IN, TEXTIN, UIN, TEXTUIN files\n"; #endif - /* for class STR other parameters are ignored */ - if (in->inputClass == 5) /* STR */ - return (0); - - if ( - (in->configOptionVector[DIM] != 1) || - (in->configOptionVector[RANK] != 1)) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + /* for class STR other parameters are ignored */ + if (in->inputClass == 5) /* STR */ + return (0); - if (in->configOptionVector[EXTERNAL] == 1) - { - if ((in->configOptionVector[COMPRESS] == 1) || - (in->configOptionVector[CHUNK] == 1) || - (in->configOptionVector[EXTEND] == 1)) - { - (void) fprintf(stderr, "%s", err2); - return (-1); + if ((in->configOptionVector[DIM] != 1) || (in->configOptionVector[RANK] != 1)) { + (void) fprintf(stderr, "%s", err1); + return (-1); } - } - if ((in->configOptionVector[COMPRESS] == 1) || - (in->configOptionVector[EXTEND] == 1)) - { - if (in->configOptionVector[CHUNK] != 1) - { - (void) fprintf(stderr, "%s", err3); - return (-1); + if (in->configOptionVector[EXTERNAL] == 1) { + if ((in->configOptionVector[COMPRESS] == 1) || (in->configOptionVector[CHUNK] == 1) || (in->configOptionVector[EXTEND] == 1)) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } } - } - /* Arch cant be STD if O/p class is FP */ - if (in->outputArchitecture == 1) - if (in->outputClass == 1) - { - (void) fprintf(stderr, "%s", err4a); - return (-1); + if ((in->configOptionVector[COMPRESS] == 1) || (in->configOptionVector[EXTEND] == 1)) { + if (in->configOptionVector[CHUNK] != 1) { + (void) fprintf(stderr, "%s", err3); + return (-1); + } } - /* Arch cant be IEEE if O/p class is IN */ - if (in->outputArchitecture == 2) - if (in->outputClass == 0) - { - (void) fprintf(stderr, "%s", err4b); - return (-1); - } + /* Arch cant be STD if O/p class is FP */ + if (in->outputArchitecture == 1) + if (in->outputClass == 1) { + (void) fprintf(stderr, "%s", err4a); + return (-1); + } - if (in->outputClass == 1) - if(in->outputSize != 32 && - in->outputSize != 64 ) - { - (void) fprintf(stderr, "%s", err5); - return (-1); - } + /* Arch cant be IEEE if O/p class is IN */ + if (in->outputArchitecture == 2) + if (in->outputClass == 0) { + (void) fprintf(stderr, "%s", err4b); + return (-1); + } + + if (in->outputClass == 1) + if (in->outputSize != 32 && in->outputSize != 64) { + (void) fprintf(stderr, "%s", err5); + return (-1); + } #ifdef _WIN32 - if (in->inputSize == 64 && (in->inputClass == 0 || in->inputClass == 4 || in->inputClass == 6 || in->inputClass == 7) ) - { - (void) fprintf(stderr, "%s", err6); - return -1; - } + if (in->inputSize == 64 && (in->inputClass == 0 || in->inputClass == 4 || in->inputClass == 6 || in->inputClass == 7) ) { + (void) fprintf(stderr, "%s", err6); + return -1; + } #endif - return (0); + return (0); } -static int -mapKeywordToIndex(char *key) +static int mapKeywordToIndex(char *key) { - int i; + int i; - for (i=0; i<NUM_KEYS; i++) - if (!HDstrcmp(keytable[i], key)) return i; - return -1; + for (i = 0; i < NUM_KEYS; i++) + if (!HDstrcmp(keytable[i], key)) + return i; + return -1; } -static int -parsePathInfo(struct path_info *path, char *temp) +static int parsePathInfo(struct path_info *path, char *temp) { - const char delimiter[] = "/"; - char *token; - int i=0; - const char *err1 = "Path string larger than MAX_PATH_NAME_LENGTH.\n"; - - token = HDstrtok (temp, delimiter); - if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) - { - (void) fprintf(stderr, err1); - return (-1); - } - HDstrcpy(path->group[i++],token); - - - while (1) - { - token = HDstrtok (NULL, delimiter); - if (token == NULL) - break; - if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) - { - (void) fprintf(stderr, err1); - return (-1); + const char delimiter[] = "/"; + char *token; + int i = 0; + const char *err1 = "Path string larger than MAX_PATH_NAME_LENGTH.\n"; + + token = HDstrtok (temp, delimiter); + if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) { + (void) fprintf(stderr, err1); + return (-1); } HDstrcpy(path->group[i++],token); - } - path->count = i; - return (0); + + while (1) { + token = HDstrtok (NULL, delimiter); + if (token == NULL) + break; + if (HDstrlen(token) >= MAX_PATH_NAME_LENGTH) { + (void) fprintf(stderr, err1); + return (-1); + } + HDstrcpy(path->group[i++],token); + } + path->count = i; + return (0); } -static int -parseDimensions(struct Input *in, char *strm) +static int parseDimensions(struct Input *in, char *strm) { - const char delimiter[] = ","; - char temp[255]; - char *token; - int i=0; - const char *err1 = "Unable to allocate dynamic memory.\n"; - - HDstrncpy(temp, strm, sizeof(temp)); - temp[sizeof(temp)-1] = '\0'; - HDstrtok (temp, delimiter); - - while (1) - { - token = HDstrtok (NULL, delimiter); - if (token == NULL) - break; - i++; - } - in->rank = i+1; - if ((in->sizeOfDimension = - (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - - i=0; - HDstrncpy(temp, strm, sizeof(temp)); - temp[sizeof(temp)-1] = '\0'; - in->sizeOfDimension[i++] = HDstrtol(HDstrtok (temp, delimiter), NULL, BASE_10); - - while (1) - { - token = HDstrtok (NULL, delimiter); - if (token == NULL) - break; - in->sizeOfDimension[i++] = HDstrtol(token, NULL, BASE_10); - } - return (0); + const char delimiter[] = ","; + char temp[255]; + char *token; + int i = 0; + const char *err1 = "Unable to allocate dynamic memory.\n"; + + HDstrncpy(temp, strm, sizeof(temp)); + temp[sizeof(temp) - 1] = '\0'; + HDstrtok (temp, delimiter); + + while (1) { + token = HDstrtok (NULL, delimiter); + if (token == NULL) + break; + i++; + } + in->rank = i + 1; + if ((in->sizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + + i = 0; + HDstrncpy(temp, strm, sizeof(temp)); + temp[sizeof(temp) - 1] = '\0'; + in->sizeOfDimension[i++] + = HDstrtol(HDstrtok (temp, delimiter), NULL, BASE_10); + + while (1) { + token = HDstrtok (NULL, delimiter); + if (token == NULL) + break; + in->sizeOfDimension[i++] = HDstrtol(token, NULL, BASE_10); + } + return (0); } -static int -getOutputClass(struct Input *in, FILE** strm) +static int getOutputClass(struct Input *in, FILE *strm) { - char temp[255]; - int kindex; - const char *err1 = "Unable to get 'string' value.\n"; - const char *err2 = "Invalid value for output class.\n"; + char temp[255]; + int kindex; + const char *err1 = "Unable to get 'string' value.\n"; + const char *err2 = "Invalid value for output class.\n"; - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if ((kindex = OutputClassStrToInt(temp)) == -1) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + if ((kindex = OutputClassStrToInt(temp)) == -1) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } - in->outputClass = kindex; - return (0); + in->outputClass = kindex; + return (0); } -static int -OutputClassStrToInt(char *temp) +static int OutputClassStrToInt(char *temp) { - int i; - char classKeywordTable[3][15] = { - "IN", - "FP", - "UIN" - }; - for (i=0; i<3; i++) - if (!HDstrcmp(classKeywordTable[i], temp)) return i; - - return -1; + int i; + char classKeywordTable[3][15] = { "IN", "FP", "UIN" }; + for (i = 0; i < 3; i++) + if (!HDstrcmp(classKeywordTable[i], temp)) + return i; + + return -1; } - /* same as getInputSize. But defined separately for extensibility */ -static int -getOutputSize(struct Input *in, FILE** strm) +/* same as getInputSize. But defined separately for extensibility */ +static int getOutputSize(struct Input *in, FILE *strm) { - int ival; - int i; - int outputSizeValidValues[4] = {8,16,32,64}; - const char *err1 = "Unable to get integer value.\n"; - const char *err2 = "Invalid value for output size.\n"; - - if (fscanf(*strm, "%d", (&ival)) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + int ival; + int i; + int outputSizeValidValues[4] = { 8, 16, 32, 64 }; + const char *err1 = "Unable to get integer value.\n"; + const char *err2 = "Invalid value for output size.\n"; - for (i=0; i<4; i++) - if (outputSizeValidValues[i] == ival) - { - in->outputSize = ival; - return (0); + if (fscanf(strm, "%d", (&ival)) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); } - (void) fprintf(stderr, "%s", err2); - return(-1); + + for (i = 0; i < 4; i++) + if (outputSizeValidValues[i] == ival) { + in->outputSize = ival; + return (0); + } + (void) fprintf(stderr, "%s", err2); + return (-1); } -static int -getInputClass(struct Input *in, char * temp) +static int getInputClass(struct Input *in, char * temp) { - int kindex; - const char *err1 = "Invalid value for input class.\n"; + int kindex; + const char *err1 = "Invalid value for input class.\n"; - if ((kindex = InputClassStrToInt(temp)) == -1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if ((kindex = InputClassStrToInt(temp)) == -1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - in->inputClass = kindex; - return (0); + in->inputClass = kindex; + return (0); } -static int -InputClassStrToInt(char *temp) +static int InputClassStrToInt(char *temp) { - int i; - char classKeywordTable[8][15] = { - "TEXTIN", - "TEXTFP", - "TEXTFPE", - "FP", - "IN", - "STR", - "TEXTUIN", - "UIN" - }; - for (i=0; i<8; i++) - if (!HDstrcmp(classKeywordTable[i], temp)) return i; - return -1; + int i; + char classKeywordTable[8][15] = { "TEXTIN", "TEXTFP", "TEXTFPE", "FP", "IN", "STR", "TEXTUIN", "UIN" }; + for (i = 0; i < 8; i++) + if (!HDstrcmp(classKeywordTable[i], temp)) + return i; + return -1; } - /* same as getOutputSize. But defined separately for extensibility */ -static int -getInputSize(struct Input *in, int ival) +/* same as getOutputSize. But defined separately for extensibility */ +static int getInputSize(struct Input *in, int ival) { - int i; - int inputSizeValidValues[4] = {8,16,32,64}; - const char *err1 = "Invalid value for input size.\n"; - - for (i=0; i<4; i++) - if (inputSizeValidValues[i] == ival) - { - in->inputSize = ival; - return (0); - } - (void) fprintf(stderr, "%s", err1); - return(-1); + int i; + int inputSizeValidValues[4] = { 8, 16, 32, 64 }; + const char *err1 = "Invalid value for input size.\n"; + + for (i = 0; i < 4; i++) + if (inputSizeValidValues[i] == ival) { + in->inputSize = ival; + return (0); + } + (void) fprintf(stderr, "%s", err1); + return (-1); } -static int -getRank(struct Input *in, FILE** strm) +static int getRank(struct Input *in, FILE *strm) { - int ival; + int ival; - const char *err1 = "Unable to get integer value.\n"; - const char *err2 = "Invalid value for rank.\n"; + const char *err1 = "Unable to get integer value.\n"; + const char *err2 = "Invalid value for rank.\n"; - if (fscanf(*strm, "%d", (&ival)) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - if (ival >=MIN_NUM_DIMENSION && ival <=MAX_NUM_DIMENSION ) - { - in->rank = ival; - return (0); - } + if (fscanf(strm, "%d", (&ival)) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } + if (ival >= MIN_NUM_DIMENSION && ival <= MAX_NUM_DIMENSION) { + in->rank = ival; + return (0); + } - (void) fprintf(stderr, "%s", err2); - return(-1); + (void) fprintf(stderr, "%s", err2); + return (-1); } - /* same as getChunkedDimensionSizes. But defined separately for extensibility */ -static int -getDimensionSizes(struct Input *in, FILE **strm) +/* same as getChunkedDimensionSizes. But defined separately for extensibility */ +static int getDimensionSizes(struct Input *in, FILE *strm) { - int ival; - int i=0; + int ival; + int i = 0; - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "No. of dimensions for which dimension sizes provided is not equal to provided rank.\n"; + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "No. of dimensions for which dimension sizes provided is not equal to provided rank.\n"; - if ((in->sizeOfDimension = - (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if ((in->sizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - while (fscanf(*strm, "%d", (&ival)) == 1) - in->sizeOfDimension[i++] = ival; + while (fscanf(strm, "%d", (&ival)) == 1) + in->sizeOfDimension[i++] = ival; - if (in->rank != i) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } - return (0); + if (in->rank != i) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } + return (0); } - /* same as getDimensionSizes. But defined separately for extensibility */ -static int -getChunkedDimensionSizes(struct Input *in, FILE **strm) +/* same as getDimensionSizes. But defined separately for extensibility */ +static int getChunkedDimensionSizes(struct Input *in, FILE *strm) { - int ival; - int i=0; - - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "No. of dimensions for which chunked dimension sizes provided is not equal to provided rank.\n"; - const char *err3 = "The CHUNKED-DIMENSION-SIZES cannot exceed the sizes of DIMENSION-SIZES\n"; + int ival; + int i = 0; - if ((in->sizeOfChunk = - (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "No. of dimensions for which chunked dimension sizes provided is not equal to provided rank.\n"; + const char *err3 = "The CHUNKED-DIMENSION-SIZES cannot exceed the sizes of DIMENSION-SIZES\n"; - while (fscanf(*strm, "%d", (&ival)) == 1) - in->sizeOfChunk[i++] = ival; + if ((in->sizeOfChunk = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if (in->rank != i) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + while (fscanf(strm, "%d", (&ival)) == 1) + in->sizeOfChunk[i++] = ival; - for (i=0; i<in->rank; i++) - if (in->sizeOfChunk[i] > in->sizeOfDimension[i]) - { - (void) fprintf(stderr, "%s", err3); - return (-1); + if (in->rank != i) { + (void) fprintf(stderr, "%s", err2); + return (-1); } - return (0); + + for (i = 0; i < in->rank; i++) + if (in->sizeOfChunk[i] > in->sizeOfDimension[i]) { + (void) fprintf(stderr, "%s", err3); + return (-1); + } + return (0); } -static int -getMaximumDimensionSizes(struct Input *in, FILE **strm) +static int getMaximumDimensionSizes(struct Input *in, FILE *strm) { - int ival; - int i=0; + int ival; + int i = 0; - const char *err1 = "Unable to allocate dynamic memory.\n"; - const char *err2 = "No. of dimensions for which maximum dimension sizes provided is not equal to provided rank.\n"; - const char *err3 = "The MAXIMUM-DIMENSIONS cannot be less than the sizes of DIMENSION-SIZES. Exception: can be -1 to indicate unlimited size\n"; + const char *err1 = "Unable to allocate dynamic memory.\n"; + const char *err2 = "No. of dimensions for which maximum dimension sizes provided is not equal to provided rank.\n"; + const char *err3 = "The MAXIMUM-DIMENSIONS cannot be less than the sizes of DIMENSION-SIZES. Exception: can be -1 to indicate unlimited size\n"; - if ((in->maxsizeOfDimension = - (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } - - while (fscanf(*strm, "%d", (&ival)) == 1) - { - if (ival == -1) - in->maxsizeOfDimension[i++] = H5S_UNLIMITED; - else - in->maxsizeOfDimension[i++] = ival; - } - - if (in->rank != i) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + if ((in->maxsizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - for (i=0; i<in->rank; i++) - { - if (in->maxsizeOfDimension[i] != H5S_UNLIMITED) - if (in->maxsizeOfDimension[i] < in->sizeOfDimension[i]) - { - (void) fprintf(stderr, "%s", err3); + while (fscanf(strm, "%d", (&ival)) == 1) { + if (ival == -1) + in->maxsizeOfDimension[i++] = H5S_UNLIMITED; + else + in->maxsizeOfDimension[i++] = ival; + } + + if (in->rank != i) { + (void) fprintf(stderr, "%s", err2); return (-1); - } - } - return (0); + } + + for (i = 0; i < in->rank; i++) { + if (in->maxsizeOfDimension[i] != H5S_UNLIMITED) + if (in->maxsizeOfDimension[i] < in->sizeOfDimension[i]) { + (void) fprintf(stderr, "%s", err3); + return (-1); + } + } + return (0); } -static int -getOutputArchitecture(struct Input *in, FILE** strm) +static int getOutputArchitecture(struct Input *in, FILE *strm) { - char temp[255]; - int kindex; - const char *err1 = "Unable to get 'string' value.\n"; - const char *err2 = "Invalid value for output architecture.\n"; + char temp[255]; + int kindex; + const char *err1 = "Unable to get 'string' value.\n"; + const char *err2 = "Invalid value for output architecture.\n"; - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if ((kindex = OutputArchStrToInt(temp)) == -1) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + if ((kindex = OutputArchStrToInt(temp)) == -1) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } - in->outputArchitecture = kindex; - return (0); + in->outputArchitecture = kindex; + return (0); } -static int -OutputArchStrToInt(char *temp) +static int OutputArchStrToInt(char *temp) { - int i; - char outputArchKeywordTable[8][15] = { - "NATIVE", - "STD", - "IEEE", - "INTEL", - "CRAY", - "MIPS", - "ALPHA", - "UNIX" - }; - for (i=0; i<8; i++) - if (!HDstrcmp(outputArchKeywordTable[i], temp)) return i; - return -1; + int i; + char outputArchKeywordTable[8][15] = { "NATIVE", "STD", "IEEE", "INTEL", + "CRAY", "MIPS", "ALPHA", "UNIX" }; + for (i = 0; i < 8; i++) + if (!HDstrcmp(outputArchKeywordTable[i], temp)) + return i; + return -1; } -static int -getOutputByteOrder(struct Input *in, FILE** strm) +static int getOutputByteOrder(struct Input *in, FILE *strm) { - char temp[255]; - int kindex; - const char *err1 = "Unable to get 'string' value.\n"; - const char *err2 = "Invalid value for output byte-order.\n"; + char temp[255]; + int kindex; + const char *err1 = "Unable to get 'string' value.\n"; + const char *err2 = "Invalid value for output byte-order.\n"; - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if ((kindex = OutputByteOrderStrToInt(temp)) == -1) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + if ((kindex = OutputByteOrderStrToInt(temp)) == -1) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } - in->outputByteOrder = kindex; - return (0); + in->outputByteOrder = kindex; + return (0); } -static int -OutputByteOrderStrToInt(char *temp) +static int OutputByteOrderStrToInt(char *temp) { - int i; - char outputByteOrderKeywordTable[2][15] = { - "BE", - "LE" - }; - for (i=0; i<2; i++) - if (!HDstrcmp(outputByteOrderKeywordTable[i], temp)) return i; - return -1; + int i; + char outputByteOrderKeywordTable[2][15] = { "BE", "LE" }; + for (i = 0; i < 2; i++) + if (!HDstrcmp(outputByteOrderKeywordTable[i], temp)) + return i; + return -1; } -static int -getCompressionType(struct Input *in, FILE** strm) +static int getCompressionType(struct Input *in, FILE *strm) { - char temp[255]; - int kindex; - const char *err1 = "Unable to get 'string' value.\n"; - const char *err2 = "Invalid value for compression.\n"; + char temp[255]; + int kindex; + const char *err1 = "Unable to get 'string' value.\n"; + const char *err2 = "Invalid value for compression.\n"; - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if ((kindex = CompressionTypeStrToInt(temp)) == -1) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } + if ((kindex = CompressionTypeStrToInt(temp)) == -1) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } - in->compressionType = kindex; - return (0); + in->compressionType = kindex; + return (0); } -static int -CompressionTypeStrToInt(char *temp) +static int CompressionTypeStrToInt(char *temp) { - /* currently supports only GZIP */ - /* can be extended by adding fields to the table */ - - int i; - char CompressionTypeKeywordTable[1][15] = { - "GZIP" - }; - for (i=0; i<1; i++) - if (!HDstrcmp(CompressionTypeKeywordTable[i], temp)) return i; - return -1; + /* currently supports only GZIP */ + /* can be extended by adding fields to the table */ + + int i; + char CompressionTypeKeywordTable[1][15] = { "GZIP" }; + for (i = 0; i < 1; i++) + if (!HDstrcmp(CompressionTypeKeywordTable[i], temp)) + return i; + return -1; } -static int -getCompressionParameter(struct Input *in, FILE** strm) +static int getCompressionParameter(struct Input *in, FILE *strm) { - /* currently supports only GZIP */ - /* can be extended by adding more values to COMPRESSION-TYPE and - handling the paramters here by adding more cases */ - - int ival; - const char *err1 = "Unable to get integer value.\n"; - const char *err2 = "Invalid value for compression paramter.\n"; - const char *err3 = "Unsupported Compression Type.\n"; - - switch (in->compressionType) - { - case 0: /* GZIP */ - if (fscanf(*strm, "%d", (&ival)) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + /* currently supports only GZIP */ + /* can be extended by adding more values to COMPRESSION-TYPE and */ + /* handling the paramters here by adding more cases */ + + int ival; + const char *err1 = "Unable to get integer value.\n"; + const char *err2 = "Invalid value for compression paramter.\n"; + const char *err3 = "Unsupported Compression Type.\n"; + + switch (in->compressionType) { + case 0: /* GZIP */ + if (fscanf(strm, "%d", (&ival)) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - if (ival <0 || ival > 9) - { - (void) fprintf(stderr, "%s", err2); - return (-1); - } - in->compressionParam = ival; - return (0); + if (ival < 0 || ival > 9) { + (void) fprintf(stderr, "%s", err2); + return (-1); + } + in->compressionParam = ival; + return (0); default: - (void) fprintf(stderr, "%s", err3); - return (-1); - } + (void) fprintf(stderr, "%s", err3); + return (-1); + } } -static int -getExternalFilename(struct Input *in, FILE** strm) +static int getExternalFilename(struct Input *in, FILE *strm) { - char temp[255]; - const char *err1 = "Unable to get 'string' value.\n"; + char temp[255]; + const char *err1 = "Unable to get 'string' value.\n"; - if (fscanf(*strm, "%s", temp) != 1) - { - (void) fprintf(stderr, "%s", err1); - return (-1); - } + if (fscanf(strm, "%s", temp) != 1) { + (void) fprintf(stderr, "%s", err1); + return (-1); + } - in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char)); - (void) HDstrcpy(in->externFilename, temp); - return (0); + in->externFilename = (char *) HDmalloc ((size_t) (HDstrlen(temp)) * sizeof(char)); + (void) HDstrcpy(in->externFilename, temp); + return (0); } -void -setDefaultValues(struct Input *in, int count) +void setDefaultValues(struct Input *in, int count) { - int i; - char temp[255]; - char num[255]; - - in->inputClass = 3; /* FP */ - in->inputSize = 32; - in->outputClass = 1; /* FP */ - in->outputSize = 32; - in->rank = 0; - in->path.count = 1; - - HDstrcpy(temp, "dataset"); - sprintf(num, "%d", count); - HDstrcat(temp, num); - HDstrcpy(in->path.group[0], temp); - - in->outputArchitecture = 0; /* NATIVE */ - in->outputByteOrder = -1; /* use default */ - in->compressionType = 0; /* GZIP */ - for (i=0; i<NUM_KEYS; i++) - in->configOptionVector[i] = 0; + int i; + char temp[255]; + char num[255]; + + in->inputClass = 3; /* FP */ + in->inputSize = 32; + in->outputClass = 1; /* FP */ + in->outputSize = 32; + in->rank = 0; + in->path.count = 1; + + HDstrcpy(temp, "dataset"); + sprintf(num, "%d", count); + HDstrcat(temp, num); + HDstrcpy(in->path.group[0], temp); + + in->outputArchitecture = 0; /* NATIVE */ + in->outputByteOrder = -1; /* use default */ + in->compressionType = 0; /* GZIP */ + for (i = 0; i < NUM_KEYS; i++) + in->configOptionVector[i] = 0; } -hid_t -createOutputDataType(struct Input *in) +hid_t createOutputDataType(struct Input *in) { - hid_t new_type = (-1); - const char *err1 = "Invalid value for output class.\n"; + hid_t new_type = (-1); + const char *err1 = "Invalid value for output class.\n"; - switch (in->outputClass) - { + switch (in->outputClass) { case 0: - switch (in->outputArchitecture) - { + switch (in->outputArchitecture) { case 0: /* NATIVE */ - switch(in->outputSize) - { + switch (in->outputSize) { case 8: - new_type = H5Tcopy (H5T_NATIVE_CHAR); - break; + new_type = H5Tcopy(H5T_NATIVE_CHAR); + break; case 16: - new_type = H5Tcopy (H5T_NATIVE_SHORT); - break; + new_type = H5Tcopy(H5T_NATIVE_SHORT); + break; case 32: - new_type = H5Tcopy (H5T_NATIVE_INT); - break; + new_type = H5Tcopy(H5T_NATIVE_INT); + break; case 64: - new_type = H5Tcopy (H5T_NATIVE_LLONG); - break; - } - switch(in->outputByteOrder) - { - case -1: /* default */ + new_type = H5Tcopy(H5T_NATIVE_LLONG); break; - case 0: - H5Tset_order (new_type,H5T_ORDER_BE); + } + switch (in->outputByteOrder) { + case -1: /* default */ + break; + case 0: + H5Tset_order(new_type, H5T_ORDER_BE); break; - case 1: - H5Tset_order (new_type,H5T_ORDER_LE); + case 1: + H5Tset_order(new_type, H5T_ORDER_LE); break; - } - break; + } + break; case 1: /* STD */ - switch(in->outputSize) - { + switch (in->outputSize) { case 8: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_STD_I8BE); - break; + new_type = H5Tcopy(H5T_STD_I8BE); + break; case 1: - new_type = H5Tcopy (H5T_STD_I8LE); + new_type = H5Tcopy(H5T_STD_I8LE); + break; + } break; - } - break; case 16: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_STD_I16BE); - break; + new_type = H5Tcopy(H5T_STD_I16BE); + break; case 1: - new_type = H5Tcopy (H5T_STD_I16LE); + new_type = H5Tcopy(H5T_STD_I16LE); + break; + } break; - } - break; case 32: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_STD_I32BE); - break; + new_type = H5Tcopy(H5T_STD_I32BE); + break; case 1: - new_type = H5Tcopy (H5T_STD_I32LE); + new_type = H5Tcopy(H5T_STD_I32LE); + break; + } break; - } - break; case 64: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_STD_I64BE); - break; + new_type = H5Tcopy(H5T_STD_I64BE); + break; case 1: - new_type = H5Tcopy (H5T_STD_I64LE); + new_type = H5Tcopy(H5T_STD_I64LE); + break; + } break; - } + } break; - } - break; } break; case 1: - switch (in->outputArchitecture) - { + switch (in->outputArchitecture) { case 0: - switch(in->outputSize) - { + switch (in->outputSize) { case 32: - new_type = H5Tcopy (H5T_NATIVE_FLOAT); - break; + new_type = H5Tcopy(H5T_NATIVE_FLOAT); + break; case 64: - new_type = H5Tcopy (H5T_NATIVE_DOUBLE); - break; - } - switch(in->outputByteOrder) - { - case -1: /* DEFAULT */ + new_type = H5Tcopy(H5T_NATIVE_DOUBLE); break; - case 0: - H5Tset_order (new_type,H5T_ORDER_BE); + } + switch (in->outputByteOrder) { + case -1: /* DEFAULT */ + break; + case 0: + H5Tset_order(new_type, H5T_ORDER_BE); break; - case 1: - H5Tset_order (new_type,H5T_ORDER_LE); + case 1: + H5Tset_order(new_type, H5T_ORDER_LE); break; - } - break; + } + break; case 1: - /* STD not supported for float */ - break; + /* STD not supported for float */ + break; case 2: - switch(in->outputSize) - { + switch (in->outputSize) { case 32: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_IEEE_F32BE); - break; + new_type = H5Tcopy(H5T_IEEE_F32BE); + break; case 1: - new_type = H5Tcopy (H5T_IEEE_F32LE); + new_type = H5Tcopy(H5T_IEEE_F32LE); + break; + } break; - } - break; case 64: - switch(in->outputByteOrder) - { + switch (in->outputByteOrder) { case -1: case 0: - new_type = H5Tcopy (H5T_IEEE_F64BE); - break; + new_type = H5Tcopy(H5T_IEEE_F64BE); + break; case 1: - new_type = H5Tcopy (H5T_IEEE_F64LE); + new_type = H5Tcopy(H5T_IEEE_F64LE); + break; + } break; - } + } break; - } - break; - } - break; + } + break; case 2: - switch (in->outputArchitecture) - { - case 0: - switch(in->outputSize) - { - case 8: - new_type = H5Tcopy (H5T_NATIVE_UCHAR); - break; + switch (in->outputArchitecture) { + case 0: + switch (in->outputSize) { + case 8: + new_type = H5Tcopy(H5T_NATIVE_UCHAR); + break; - case 16: - new_type = H5Tcopy (H5T_NATIVE_USHORT); - break; + case 16: + new_type = H5Tcopy(H5T_NATIVE_USHORT); + break; - case 32: - new_type = H5Tcopy (H5T_NATIVE_UINT); - break; + case 32: + new_type = H5Tcopy(H5T_NATIVE_UINT); + break; - case 64: - new_type = H5Tcopy (H5T_NATIVE_ULLONG); - break; + case 64: + new_type = H5Tcopy(H5T_NATIVE_ULLONG); + break; } - switch(in->outputByteOrder) - { - case -1: /* Default */ + switch (in->outputByteOrder) { + case -1: /* Default */ break; - case 0: - H5Tset_order (new_type,H5T_ORDER_BE); + case 0: + H5Tset_order(new_type, H5T_ORDER_BE); break; - case 1: - H5Tset_order (new_type,H5T_ORDER_LE); + case 1: + H5Tset_order(new_type, H5T_ORDER_LE); break; - } + } break; - case 1: - switch(in->outputSize) - { - case 8: - switch(in->outputByteOrder) - { - case -1: - case 0: - new_type = H5Tcopy (H5T_STD_U8BE); - break; - - case 1: - new_type = H5Tcopy (H5T_STD_U8LE); - break; + case 1: + switch (in->outputSize) { + case 8: + switch (in->outputByteOrder) { + case -1: + case 0: + new_type = H5Tcopy(H5T_STD_U8BE); + break; + + case 1: + new_type = H5Tcopy(H5T_STD_U8LE); + break; } break; - case 16: - switch(in->outputByteOrder) - { - case -1: - case 0: - new_type = H5Tcopy (H5T_STD_U16BE); - break; - - case 1: - new_type = H5Tcopy (H5T_STD_U16LE); - break; + case 16: + switch (in->outputByteOrder) { + case -1: + case 0: + new_type = H5Tcopy(H5T_STD_U16BE); + break; + + case 1: + new_type = H5Tcopy(H5T_STD_U16LE); + break; } break; - case 32: - switch(in->outputByteOrder) - { - case -1: - case 0: - new_type = H5Tcopy (H5T_STD_U32BE); - break; - - case 1: - new_type = H5Tcopy (H5T_STD_U32LE); - break; + case 32: + switch (in->outputByteOrder) { + case -1: + case 0: + new_type = H5Tcopy(H5T_STD_U32BE); + break; + + case 1: + new_type = H5Tcopy(H5T_STD_U32LE); + break; } break; - case 64: - switch(in->outputByteOrder) - { - case -1: - case 0: - new_type = H5Tcopy (H5T_STD_U64BE); - break; - - case 1: - new_type = H5Tcopy (H5T_STD_U64LE); - break; + case 64: + switch (in->outputByteOrder) { + case -1: + case 0: + new_type = H5Tcopy(H5T_STD_U64BE); + break; + + case 1: + new_type = H5Tcopy(H5T_STD_U64LE); + break; } break; } break; - case 2: + case 2: /* IEEE not supported for INT */ - break; + break; } @@ -2397,48 +2194,44 @@ createOutputDataType(struct Input *in) return new_type; } -hid_t -createInputDataType(struct Input *in) +hid_t createInputDataType(struct Input *in) { - hid_t new_type = (-1); - const char *err1 = "Invalid value for input class.\n"; + hid_t new_type = (-1); + const char *err1 = "Invalid value for input class.\n"; - switch (in->inputClass) - { + switch (in->inputClass) { case 0: case 4: - switch(in->inputSize) - { - case 8: - new_type = H5Tcopy (H5T_NATIVE_CHAR); - break; - - case 16: - new_type = H5Tcopy (H5T_NATIVE_SHORT); - break; - - case 32: - new_type = H5Tcopy (H5T_NATIVE_INT); - break; - - case 64: - new_type = H5Tcopy (H5T_NATIVE_LLONG); - break; + switch (in->inputSize) { + case 8: + new_type = H5Tcopy(H5T_NATIVE_CHAR); + break; + + case 16: + new_type = H5Tcopy(H5T_NATIVE_SHORT); + break; + + case 32: + new_type = H5Tcopy(H5T_NATIVE_INT); + break; + + case 64: + new_type = H5Tcopy(H5T_NATIVE_LLONG); + break; } break; case 1: case 2: case 3: - switch(in->inputSize) - { - case 32: - new_type = H5Tcopy (H5T_NATIVE_FLOAT); - break; - - case 64: - new_type = H5Tcopy (H5T_NATIVE_DOUBLE); - break; + switch (in->inputSize) { + case 32: + new_type = H5Tcopy(H5T_NATIVE_FLOAT); + break; + + case 64: + new_type = H5Tcopy(H5T_NATIVE_DOUBLE); + break; } break; @@ -2447,23 +2240,22 @@ createInputDataType(struct Input *in) case 6: case 7: - switch(in->inputSize) - { - case 8: - new_type = H5Tcopy (H5T_NATIVE_UCHAR); - break; - - case 16: - new_type = H5Tcopy (H5T_NATIVE_USHORT); - break; - - case 32: - new_type = H5Tcopy (H5T_NATIVE_UINT); - break; - - case 64: - new_type = H5Tcopy (H5T_NATIVE_ULLONG); - break; + switch (in->inputSize) { + case 8: + new_type = H5Tcopy(H5T_NATIVE_UCHAR); + break; + + case 16: + new_type = H5Tcopy(H5T_NATIVE_USHORT); + break; + + case 32: + new_type = H5Tcopy(H5T_NATIVE_UINT); + break; + + case 64: + new_type = H5Tcopy(H5T_NATIVE_ULLONG); + break; } break; @@ -2471,161 +2263,159 @@ createInputDataType(struct Input *in) (void) fprintf(stderr, "%s", err1); return (-1); } - return new_type; + return new_type; } -static int -process(struct Options *opt) +static int process(struct Options *opt) { - struct Input *in; - hid_t file_id, group_id, handle; - hid_t dataset, dataspace = (-1); - FILE *strm, *extfile; - hid_t intype, outtype; - hid_t proplist; - hsize_t numOfElements = 1; - int j,k; - - const char *err1 = "Error creating HDF output file: %s.\n"; - const char *err2 = "Error in processing the configuration file: %s.\n"; - const char *err3 = "Error in reading the input file: %s.\n"; - const char *err4 = "Error in creating or opening external file.\n"; - const char *err5 = "Error in creating the output data set. Dataset with the same name may exist at the specified path\n"; - const char *err6 = "Error in writing the output data set.\n"; - - H5E_BEGIN_TRY { - if ((file_id = H5Fopen(opt->outfile, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) { - if ((file_id = H5Fcreate(opt->outfile, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) == FAIL) - { - (void) fprintf(stderr, err1, opt->outfile); - return (-1); - } - } - } H5E_END_TRY; + struct Input *in; + FILE *extfile; + hid_t file_id; + hid_t group_id; + hid_t handle; + hid_t dataset; + hid_t dataspace = (-1); + hid_t intype; + hid_t outtype; + hid_t proplist; + hsize_t numOfElements = 1; + int j; + int k; + + const char *err1 = "Error creating HDF output file: %s.\n"; + const char *err2 = "Error in processing the configuration file: %s.\n"; + const char *err3 = "Error in reading the input file: %s.\n"; + const char *err4 = "Error in creating or opening external file.\n"; + const char *err5 = "Error in creating the output data set. Dataset with the same name may exist at the specified path\n"; + const char *err6 = "Error in writing the output data set.\n"; - for (k = 0; k < opt->fcount; k++) - { - in = &(opt->infiles[k].in); - if (opt->infiles[k].config == 1) + H5E_BEGIN_TRY { - if (processConfigurationFile(opt->infiles[k].configfile, in, &strm) == -1) - { - (void) fprintf(stderr, err2, opt->infiles[k].configfile); - return (-1); + if ((file_id = H5Fopen(opt->outfile, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) { + if ((file_id = H5Fcreate(opt->outfile, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) == FAIL) { + (void) fprintf(stderr, err1, opt->outfile); + return (-1); + } } } - - if (processDataFile(opt->infiles[k].datafile, in, &strm, file_id ) == -1) - { - (void) fprintf(stderr, err3, opt->infiles[k].datafile); - return (-1); - } - - if (in->inputClass != 5) /* STR */ - { - - for (j=0; j<in->rank;j++) - numOfElements *= in->sizeOfDimension[j]; - - /* disable error reporting */ - H5E_BEGIN_TRY { - /* create parent groups */ - if(in->path.count > 1) { - j = 0; - handle = file_id; - while(j < in->path.count - 1) { - if((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) { - group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - for (; j < in->path.count - 1; j++) - group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - handle = group_id; - break; - } - handle = group_id; - j++; + H5E_END_TRY; + + for (k = 0; k < opt->fcount; k++) { + in = &(opt->infiles[k].in); + if (opt->infiles[k].config == 1) { + if (processConfigurationFile(opt->infiles[k].configfile, in) == -1) { + (void) fprintf(stderr, err2, opt->infiles[k].configfile); + return (-1); } } - else { - handle = file_id; - j=0; - } - /*enable error reporting */ - } H5E_END_TRY; + if (processDataFile(opt->infiles[k].datafile, in, file_id) == -1) { + (void) fprintf(stderr, err3, opt->infiles[k].datafile); + return (-1); + } - /*create data type */ - intype = createInputDataType(in); - outtype = createOutputDataType(in); + if (in->inputClass != 5) { /* STR */ + for (j = 0; j < in->rank; j++) + numOfElements *= in->sizeOfDimension[j]; - /* create property list */ - proplist = H5Pcreate (H5P_DATASET_CREATE); - if (in->configOptionVector[CHUNK] == 1) - { - H5Pset_layout (proplist, H5D_CHUNKED); - /* not reqd chunking is implied if set_chunk is used */ - H5Pset_chunk (proplist, in->rank, in->sizeOfChunk); - } + /* disable error reporting */ + H5E_BEGIN_TRY + { + /* create parent groups */ + if (in->path.count > 1) { + j = 0; + handle = file_id; + while (j < in->path.count - 1) { + if ((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) { + group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + for (; j < in->path.count - 1; j++) + group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + handle = group_id; + break; + } + handle = group_id; + j++; + } + } + else { + handle = file_id; + j = 0; + } - if (in->configOptionVector[COMPRESS] == 1) - { - H5Pset_deflate (proplist, (unsigned) in->compressionParam); - } + /*enable error reporting */ + } + H5E_END_TRY; + + /*create data type */ + intype = createInputDataType(in); + outtype = createOutputDataType(in); + + /* create property list */ + proplist = H5Pcreate(H5P_DATASET_CREATE); + if (in->configOptionVector[CHUNK] == 1) { + H5Pset_layout(proplist, H5D_CHUNKED); + /* not reqd chunking is implied if set_chunk is used */ + H5Pset_chunk(proplist, in->rank, in->sizeOfChunk); + } - if (in->configOptionVector[EXTERNAL] == 1) - { - /* creating the external file if it doesnt exist */ - if ((extfile = HDfopen(in->externFilename, "ab")) == NULL) - { - (void) fprintf(stderr, "%s", err4); - H5Pclose(proplist); - H5Sclose(dataspace); - H5Fclose(file_id); - return (-1); - } - HDfclose(extfile); - H5Pset_external (proplist, in->externFilename, (off_t)0, numOfElements * in->inputSize / 8); - } + if (in->configOptionVector[COMPRESS] == 1) { + H5Pset_deflate(proplist, (unsigned) in->compressionParam); + } - /* create dataspace */ - if(in->configOptionVector[EXTEND] == 1) - dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, in->maxsizeOfDimension); - else - dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, NULL); + if (in->configOptionVector[EXTERNAL] == 1) { + /* creating the external file if it doesnt exist */ + if ((extfile = HDfopen(in->externFilename, "ab")) == NULL) { + (void) fprintf(stderr, "%s", err4); + H5Pclose(proplist); + H5Sclose(dataspace); + H5Fclose(file_id); + return (-1); + } + HDfclose(extfile); + H5Pset_external(proplist, in->externFilename, (off_t) 0, numOfElements * in->inputSize / 8); + } - /* disable error reporting */ - H5E_BEGIN_TRY { - /* create data set */ - if((dataset = H5Dcreate2(handle, in->path.group[j], outtype, dataspace, H5P_DEFAULT, proplist, H5P_DEFAULT)) < 0) { - (void)fprintf(stderr, "%s", err5); - H5Pclose(proplist); - H5Sclose(dataspace); - H5Fclose(file_id); - return (-1); - } + /* create dataspace */ + if (in->configOptionVector[EXTEND] == 1) + dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, in->maxsizeOfDimension); + else + dataspace = H5Screate_simple(in->rank, in->sizeOfDimension, NULL); - /*enable error reporting */ - } H5E_END_TRY; - - /* write dataset */ - if(H5Dwrite(dataset, intype, H5S_ALL, H5S_ALL, H5P_DEFAULT, (VOIDP)in->data) < 0) { - (void) fprintf(stderr, "%s", err6); - H5Dclose(dataset); - H5Pclose(proplist); - H5Sclose(dataspace); - H5Fclose(file_id); - return (-1); - } + /* disable error reporting */ + H5E_BEGIN_TRY + { + /* create data set */ + if ((dataset = H5Dcreate2(handle, in->path.group[j], outtype, dataspace, H5P_DEFAULT, proplist, H5P_DEFAULT)) < 0) { + (void) fprintf(stderr, "%s", err5); + H5Pclose(proplist); + H5Sclose(dataspace); + H5Fclose(file_id); + return (-1); + } - H5Dclose(dataset); - H5Pclose(proplist); - H5Sclose(dataspace); - } + /*enable error reporting */ + } + H5E_END_TRY; + + /* write dataset */ + if (H5Dwrite(dataset, intype, H5S_ALL, H5S_ALL, H5P_DEFAULT, (VOIDP) in->data) < 0) { + (void) fprintf(stderr, "%s", err6); + H5Dclose(dataset); + H5Pclose(proplist); + H5Sclose(dataspace); + H5Fclose(file_id); + return (-1); + } - } /* STR */ + H5Dclose(dataset); + H5Pclose(proplist); + H5Sclose(dataspace); + } + } /* STR */ - H5Fclose(file_id); - return (0); + H5Fclose(file_id); + return (0); } /* @@ -2636,294 +2426,409 @@ process(struct Options *opt) * Print a helpful summary of command usage and features. */ -void -help(char *name) +void help(char *name) { - (void) fprintf(stdout, "Name:\n\n"); - (void) fprintf(stdout, "\t%s\n\n", name); - (void) fprintf(stdout, "\t TOOL NAME:\n"); - (void) fprintf(stdout, "\t %s\n", name); - (void) fprintf(stdout, "\t SYNTAX:\n"); - (void) fprintf(stdout, "\t %s -h[elp], OR\n", name); - (void) fprintf(stdout, "\t %s <infile> -c[onfig] <configfile> [<infile> -c[config] <configfile>...]", name); - (void) fprintf(stdout, "\t\t\t\t -o[utfile] <outfile>\n\n"); - (void) fprintf(stdout, "\t PURPOSE:\n"); - (void) fprintf(stdout, "\t To convert data stored in one or more ASCII or binary files\n"); - (void) fprintf(stdout, "\t into one or more datasets (in accordance with the \n"); - (void) fprintf(stdout, "\t user-specified type and storage properties) in an existing \n"); - (void) fprintf(stdout, "\t or new HDF5 file.\n\n"); - (void) fprintf(stdout, "\t DESCRIPTION:\n"); - (void) fprintf(stdout, "\t The primary objective of the utility is to convert floating\n"); - (void) fprintf(stdout, "\t point or integer data stored in ASCII text or binary form \n"); - (void) fprintf(stdout, "\t into a data-set according to the type and storage properties\n"); - (void) fprintf(stdout, "\t specified by the user. The utility can also accept ASCII\n"); - (void) fprintf(stdout, "\t text files and store the contents in a compact form as an\n"); - (void) fprintf(stdout, "\t array of one-dimensional strings.\n\n"); - (void) fprintf(stdout, "\t The input data to be written as a data-set can be provided\n"); - (void) fprintf(stdout, "\t to the utility in one of the following forms:\n"); - (void) fprintf(stdout, "\t 1. ASCII text file with numeric data (floating point or \n"); - (void) fprintf(stdout, "\t integer data). \n"); - (void) fprintf(stdout, "\t 2. Binary file with native floating point data (32-bit or \n"); - (void) fprintf(stdout, "\t 64-bit) \n"); - (void) fprintf(stdout, "\t 3. Binary file with native integer (signed or unsigned)\n"); - (void) fprintf(stdout, "\t data (8-bit or 16-bit or 32-bit or 64-bit). \n"); - (void) fprintf(stdout, "\t 4. ASCII text file containing strings (text data).\n"); - (void) fprintf(stdout, "\t \n"); - (void) fprintf(stdout, "\t Every input file is associated with a configuration file \n"); - (void) fprintf(stdout, "\t also provided as an input to the utility. (See Section \n"); - (void) fprintf(stdout, "\t \"CONFIGURATION FILE\" to know how it is to be organized).\n"); - (void) fprintf(stdout, "\t The class, size and dimensions of the input data is \n"); - (void) fprintf(stdout, "\t specified in this configuration file. A point to note is\n"); - (void) fprintf(stdout, "\t that the floating point data in the ASCII text file may be\n"); - (void) fprintf(stdout, "\t organized in the fixed floating form (for example 323.56)\n"); - (void) fprintf(stdout, "\t or in a scientific notation (for example 3.23E+02). A \n"); - (void) fprintf(stdout, "\t different input-class specification is to be used for both\n"); - (void) fprintf(stdout, "\t forms.\n\n"); - (void) fprintf(stdout, "\t The utility extracts the input data from the input file \n"); - (void) fprintf(stdout, "\t according to the specified parameters and saves it into \n"); - (void) fprintf(stdout, "\t an H5 dataset. \n\n"); - (void) fprintf(stdout, "\t The user can specify output type and storage properties in \n"); - (void) fprintf(stdout, "\t the configuration file. The user is requited to specify the \n"); - (void) fprintf(stdout, "\t path of the dataset. If the groups in the path leading to \n"); - (void) fprintf(stdout, "\t the data-set do not exist, the groups will be created by the\n"); - (void) fprintf(stdout, "\t utility. If no group is specified, the dataset will be\n"); - (void) fprintf(stdout, "\t created under the root group.\n\n"); - (void) fprintf(stdout, "\t In addition to the name, the user is also required to \n"); - (void) fprintf(stdout, "\t provide the class and size of output data to be written to \n"); - (void) fprintf(stdout, "\t the dataset and may optionally specify the output-architecure,\n"); - (void) fprintf(stdout, "\t and the output-byte-order. If output-architecture is not \n"); - (void) fprintf(stdout, "\t specified the default is NATIVE. Output-byte-orders are fixed\n"); - (void) fprintf(stdout, "\t for some architectures and may be specified only if output-\n"); - (void) fprintf(stdout, "\t architecture is IEEE, UNIX or STD.\n\n"); - (void) fprintf(stdout, "\t Also, layout and other storage properties such as \n"); - (void) fprintf(stdout, "\t compression, external storage and extendible data-sets may be\n"); - (void) fprintf(stdout, "\t optionally specified. The layout and storage properties \n"); - (void) fprintf(stdout, "\t denote how raw data is to be organized on the disk. If these \n"); - (void) fprintf(stdout, "\t options are not specified the default is Contiguous layout \n"); - (void) fprintf(stdout, "\t and storage.\n\n"); - (void) fprintf(stdout, "\t The dataset can be organized in any of the following ways:\n"); - (void) fprintf(stdout, "\t 1. Contiguous.\n"); - (void) fprintf(stdout, "\t 2. Chunked.\n"); - (void) fprintf(stdout, "\t 3. External Storage File (has to be contiguous)\n"); - (void) fprintf(stdout, "\t 4. Extendible data sets (has to be chunked)\n"); - (void) fprintf(stdout, "\t 5. Compressed. (has to be chunked)\n"); - (void) fprintf(stdout, "\t 6. Compressed & Extendible (has to be chunked)\n\n"); - (void) fprintf(stdout, "\t If the user wants to store raw data in a non-HDF file then \n"); - (void) fprintf(stdout, "\t the external storage file option is to be used and the name \n"); - (void) fprintf(stdout, "\t of the file is to be specified. \n\n"); - (void) fprintf(stdout, "\t If the user wants the dimensions of the data-set to be\n"); - (void) fprintf(stdout, "\t unlimited, the extendible data set option can be chosen. \n\n"); - (void) fprintf(stdout, "\t The user may also specify the type of compression and the \n"); - (void) fprintf(stdout, "\t level to which the data set must be compresses by setting \n"); - (void) fprintf(stdout, "\t the compressed option.\n\n"); - (void) fprintf(stdout, "\t SYNOPSIS:\n"); - (void) fprintf(stdout, "\t h5import -h[elp], OR\n"); - (void) fprintf(stdout, "\t h5import <infile> -c[onfig] <configfile> \ + (void) fprintf(stdout, "Name:\n\n"); + (void) fprintf(stdout, "\t%s\n\n", name); + (void) fprintf(stdout, "\t TOOL NAME:\n"); + (void) fprintf(stdout, "\t %s\n", name); + (void) fprintf(stdout, "\t SYNTAX:\n"); + (void) fprintf(stdout, "\t %s -h[elp], OR\n", name); + (void) fprintf(stdout, + "\t %s <infile> -c[onfig] <configfile> [<infile> -c[config] <configfile>...]", name); + (void) fprintf(stdout, "\t\t\t\t -o[utfile] <outfile>\n\n"); + (void) fprintf(stdout, "\t PURPOSE:\n"); + (void) fprintf(stdout, + "\t To convert data stored in one or more ASCII or binary files\n"); + (void) fprintf(stdout, + "\t into one or more datasets (in accordance with the \n"); + (void) fprintf(stdout, + "\t user-specified type and storage properties) in an existing \n"); + (void) fprintf(stdout, "\t or new HDF5 file.\n\n"); + (void) fprintf(stdout, "\t DESCRIPTION:\n"); + (void) fprintf(stdout, + "\t The primary objective of the utility is to convert floating\n"); + (void) fprintf(stdout, + "\t point or integer data stored in ASCII text or binary form \n"); + (void) fprintf(stdout, + "\t into a data-set according to the type and storage properties\n"); + (void) fprintf(stdout, + "\t specified by the user. The utility can also accept ASCII\n"); + (void) fprintf(stdout, + "\t text files and store the contents in a compact form as an\n"); + (void) fprintf(stdout, "\t array of one-dimensional strings.\n\n"); + (void) fprintf(stdout, + "\t The input data to be written as a data-set can be provided\n"); + (void) fprintf(stdout, "\t to the utility in one of the following forms:\n"); + (void) fprintf(stdout, + "\t 1. ASCII text file with numeric data (floating point or \n"); + (void) fprintf(stdout, "\t integer data). \n"); + (void) fprintf(stdout, + "\t 2. Binary file with native floating point data (32-bit or \n"); + (void) fprintf(stdout, "\t 64-bit) \n"); + (void) fprintf(stdout, + "\t 3. Binary file with native integer (signed or unsigned)\n"); + (void) fprintf(stdout, "\t data (8-bit or 16-bit or 32-bit or 64-bit). \n"); + (void) fprintf(stdout, + "\t 4. ASCII text file containing strings (text data).\n"); + (void) fprintf(stdout, "\t \n"); + (void) fprintf(stdout, + "\t Every input file is associated with a configuration file \n"); + (void) fprintf(stdout, + "\t also provided as an input to the utility. (See Section \n"); + (void) fprintf(stdout, + "\t \"CONFIGURATION FILE\" to know how it is to be organized).\n"); + (void) fprintf(stdout, + "\t The class, size and dimensions of the input data is \n"); + (void) fprintf(stdout, + "\t specified in this configuration file. A point to note is\n"); + (void) fprintf(stdout, + "\t that the floating point data in the ASCII text file may be\n"); + (void) fprintf(stdout, + "\t organized in the fixed floating form (for example 323.56)\n"); + (void) fprintf(stdout, + "\t or in a scientific notation (for example 3.23E+02). A \n"); + (void) fprintf(stdout, + "\t different input-class specification is to be used for both\n"); + (void) fprintf(stdout, "\t forms.\n\n"); + (void) fprintf(stdout, + "\t The utility extracts the input data from the input file \n"); + (void) fprintf(stdout, + "\t according to the specified parameters and saves it into \n"); + (void) fprintf(stdout, "\t an H5 dataset. \n\n"); + (void) fprintf(stdout, + "\t The user can specify output type and storage properties in \n"); + (void) fprintf(stdout, + "\t the configuration file. The user is requited to specify the \n"); + (void) fprintf(stdout, + "\t path of the dataset. If the groups in the path leading to \n"); + (void) fprintf(stdout, + "\t the data-set do not exist, the groups will be created by the\n"); + (void) fprintf(stdout, + "\t utility. If no group is specified, the dataset will be\n"); + (void) fprintf(stdout, "\t created under the root group.\n\n"); + (void) fprintf(stdout, + "\t In addition to the name, the user is also required to \n"); + (void) fprintf(stdout, + "\t provide the class and size of output data to be written to \n"); + (void) fprintf(stdout, + "\t the dataset and may optionally specify the output-architecure,\n"); + (void) fprintf(stdout, + "\t and the output-byte-order. If output-architecture is not \n"); + (void) fprintf(stdout, + "\t specified the default is NATIVE. Output-byte-orders are fixed\n"); + (void) fprintf(stdout, + "\t for some architectures and may be specified only if output-\n"); + (void) fprintf(stdout, "\t architecture is IEEE, UNIX or STD.\n\n"); + (void) fprintf(stdout, + "\t Also, layout and other storage properties such as \n"); + (void) fprintf(stdout, + "\t compression, external storage and extendible data-sets may be\n"); + (void) fprintf(stdout, + "\t optionally specified. The layout and storage properties \n"); + (void) fprintf(stdout, + "\t denote how raw data is to be organized on the disk. If these \n"); + (void) fprintf(stdout, + "\t options are not specified the default is Contiguous layout \n"); + (void) fprintf(stdout, "\t and storage.\n\n"); + (void) fprintf(stdout, + "\t The dataset can be organized in any of the following ways:\n"); + (void) fprintf(stdout, "\t 1. Contiguous.\n"); + (void) fprintf(stdout, "\t 2. Chunked.\n"); + (void) fprintf(stdout, + "\t 3. External Storage File (has to be contiguous)\n"); + (void) fprintf(stdout, + "\t 4. Extendible data sets (has to be chunked)\n"); + (void) fprintf(stdout, "\t 5. Compressed. (has to be chunked)\n"); + (void) fprintf(stdout, + "\t 6. Compressed & Extendible (has to be chunked)\n\n"); + (void) fprintf(stdout, + "\t If the user wants to store raw data in a non-HDF file then \n"); + (void) fprintf(stdout, + "\t the external storage file option is to be used and the name \n"); + (void) fprintf(stdout, "\t of the file is to be specified. \n\n"); + (void) fprintf(stdout, + "\t If the user wants the dimensions of the data-set to be\n"); + (void) fprintf(stdout, + "\t unlimited, the extendible data set option can be chosen. \n\n"); + (void) fprintf(stdout, + "\t The user may also specify the type of compression and the \n"); + (void) fprintf(stdout, + "\t level to which the data set must be compresses by setting \n"); + (void) fprintf(stdout, "\t the compressed option.\n\n"); + (void) fprintf(stdout, "\t SYNOPSIS:\n"); + (void) fprintf(stdout, "\t h5import -h[elp], OR\n"); + (void) fprintf( stdout, + "\t h5import <infile> -c[onfig] <configfile> \ [<infile> -c[config] <confile2>...] -o[utfile] <outfile>\n\n"); - (void) fprintf(stdout, "\t -h[elp]:\n"); - (void) fprintf(stdout, "\t Prints this summary of usage, and exits.\n\n"); - (void) fprintf(stdout, "\t <infile(s)>:\n"); - (void) fprintf(stdout, "\t Name of the Input file(s), containing a \n"); - (void) fprintf(stdout, "\t single n-dimensional floating point or integer array \n"); - (void) fprintf(stdout, "\t in either ASCII text, native floating point(32-bit \n"); - (void) fprintf(stdout, "\t or 64-bit) or native integer(8-bit or 16-bit or \n"); - (void) fprintf(stdout, "\t 32-bit or 64-bit). Data to be specified in the order\n"); - (void) fprintf(stdout, "\t of fastest changing dimensions first.\n\n"); - (void) fprintf(stdout, "\t -c[config] <configfile>:\n"); - (void) fprintf(stdout, "\t Every input file should be associated with a \n"); - (void) fprintf(stdout, "\t configuration file and this is done by the -c option.\n"); - (void) fprintf(stdout, "\t <configfile> is the name of the configuration file.\n"); - (void) fprintf(stdout, "\t (See Section \"CONFIGURATION FILE\")\n\n"); - (void) fprintf(stdout, "\t -o[utfile] <outfile>:\n"); - (void) fprintf(stdout, "\t Name of the HDF5 output file. Data from one or more \n"); - (void) fprintf(stdout, "\t input files are stored as one or more data sets in \n"); - (void) fprintf(stdout, "\t <outfile>. The output file may be an existing file or \n"); - (void) fprintf(stdout, "\t it maybe new in which case it will be created.\n\n\n"); - (void) fprintf(stdout, "\t CONFIGURATION FILE:\n"); - (void) fprintf(stdout, "\t The configuration file is an ASCII text file and must be \n"); - (void) fprintf(stdout, "\t organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n"); - (void) fprintf(stdout, "\t line.\n\n"); - (void) fprintf(stdout, "\t The configuration file may have the following keywords each \n"); - (void) fprintf(stdout, "\t followed by an acceptable value.\n\n"); - (void) fprintf(stdout, "\t Required KEYWORDS:\n"); - (void) fprintf(stdout, "\t PATH\n"); - (void) fprintf(stdout, "\t INPUT-CLASS\n"); - (void) fprintf(stdout, "\t INPUT-SIZE\n"); - (void) fprintf(stdout, "\t RANK\n"); - (void) fprintf(stdout, "\t DIMENSION-SIZES\n"); - (void) fprintf(stdout, "\t OUTPUT-CLASS\n"); - (void) fprintf(stdout, "\t OUTPUT-SIZE\n\n"); - (void) fprintf(stdout, "\t Optional KEYWORDS:\n"); - (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE\n"); - (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n"); - (void) fprintf(stdout, "\t COMPRESSION-TYPE\n"); - (void) fprintf(stdout, "\t COMPRESSION-PARAM\n"); - (void) fprintf(stdout, "\t EXTERNAL-STORAGE\n"); - (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS\n\n\n"); - (void) fprintf(stdout, "\t Values for keywords:\n"); - (void) fprintf(stdout, "\t PATH:\n"); - (void) fprintf(stdout, "\t Strings separated by spaces to represent\n"); - (void) fprintf(stdout, "\t the path of the data-set. If the groups in\n"); - (void) fprintf(stdout, "\t the path do no exist, they will be created. \n"); - (void) fprintf(stdout, "\t For example,\n"); - (void) fprintf(stdout, "\t PATH grp1/grp2/dataset1\n"); - (void) fprintf(stdout, "\t PATH: keyword\n"); - (void) fprintf(stdout, "\t grp1: group under the root. If\n"); - (void) fprintf(stdout, "\t non-existent will be created.\n"); - (void) fprintf(stdout, "\t grp2: group under grp1. If \n"); - (void) fprintf(stdout, "\t non-existent will be created \n"); - (void) fprintf(stdout, "\t under grp1.\n"); - (void) fprintf(stdout, "\t dataset1: the name of the data-set \n"); - (void) fprintf(stdout, "\t to be created.\n\n"); - (void) fprintf(stdout, "\t INPUT-CLASS:\n"); - (void) fprintf(stdout, "\t String denoting the type of input data.\n"); - (void) fprintf(stdout, "\t (\"TEXTIN\", \"TEXTFP\", \"FP\", \"IN\", \n"); - (void) fprintf(stdout, "\t \"STR\", \"TEXTUIN\", \"UIN\"). \n"); - (void) fprintf(stdout, "\t INPUT-CLASS \"TEXTIN\" denotes an ASCII text \n"); - (void) fprintf(stdout, "\t file with signed integer data in ASCII form,\n"); - (void) fprintf(stdout, "\t INPUT-CLASS \"TEXTUIN\" denotes an ASCII text \n"); - (void) fprintf(stdout, "\t file with unsigned integer data in ASCII form,\n"); - (void) fprintf(stdout, "\t \"TEXTFP\" denotes an ASCII text file containing\n"); - (void) fprintf(stdout, "\t floating point data in the fixed notation\n"); - (void) fprintf(stdout, "\t (325.34),\n"); - (void) fprintf(stdout, "\t \"FP\" denotes a floating point binary file,\n"); - (void) fprintf(stdout, "\t \"IN\" denotes a signed integer binary file,\n"); - (void) fprintf(stdout, "\t \"UIN\" denotes an unsigned integer binary file,\n"); - (void) fprintf(stdout, "\t & \"STR\" denotes an ASCII text file the \n"); - (void) fprintf(stdout, "\t contents of which should be stored as an 1-D \n"); - (void) fprintf(stdout, "\t array of strings.\n"); - (void) fprintf(stdout, "\t If INPUT-CLASS is \"STR\", then RANK, \n"); - (void) fprintf(stdout, "\t DIMENSION-SIZES, OUTPUT-CLASS, OUTPUT-SIZE, \n"); - (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE and OUTPUT-BYTE-ORDER \n"); - (void) fprintf(stdout, "\t will be ignored.\n\n\n"); - (void) fprintf(stdout, "\t INPUT-SIZE:\n"); - (void) fprintf(stdout, "\t Integer denoting the size of the input data \n"); - (void) fprintf(stdout, "\t (8, 16, 32, 64). \n\n"); - (void) fprintf(stdout, "\t For floating point,\n"); - (void) fprintf(stdout, "\t INPUT-SIZE can be 32 or 64.\n"); - (void) fprintf(stdout, "\t For integers (signed and unsigned)\n"); - (void) fprintf(stdout, "\t INPUT-SIZE can be 8, 16, 32 or 64.\n\n"); - (void) fprintf(stdout, "\t RANK:\n"); - (void) fprintf(stdout, "\t Integer denoting the number of dimensions.\n\n"); - (void) fprintf(stdout, "\t DIMENSION-SIZES:\n"); - (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n"); - (void) fprintf(stdout, "\t dimension sizes for the no. of dimensions \n"); - (void) fprintf(stdout, "\t determined by rank.\n\n"); - (void) fprintf(stdout, "\t OUTPUT-CLASS:\n"); - (void) fprintf(stdout, "\t String dentoting data type of the dataset to \n"); - (void) fprintf(stdout, "\t be written (\"IN\",\"FP\", \"UIN\")\n\n"); - (void) fprintf(stdout, "\t OUTPUT-SIZE:\n"); - (void) fprintf(stdout, "\t Integer denoting the size of the data in the \n"); - (void) fprintf(stdout, "\t output dataset to be written.\n"); - (void) fprintf(stdout, "\t If OUTPUT-CLASS is \"FP\", OUTPUT-SIZE can be \n"); - (void) fprintf(stdout, "\t 32 or 64.\n"); - (void) fprintf(stdout, "\t If OUTPUT-CLASS is \"IN\" or \"UIN\", OUTPUT-SIZE\n"); - (void) fprintf(stdout, "\t can be 8, 16, 32 or 64.\n\n"); - (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE:\n"); - (void) fprintf(stdout, "\t STRING denoting the type of output \n"); - (void) fprintf(stdout, "\t architecture. Can accept the following values\n"); - (void) fprintf(stdout, "\t STD\n"); - (void) fprintf(stdout, "\t IEEE\n"); - (void) fprintf(stdout, "\t INTEL\n"); - (void) fprintf(stdout, "\t CRAY\n"); - (void) fprintf(stdout, "\t MIPS\n"); - (void) fprintf(stdout, "\t ALPHA\n"); - (void) fprintf(stdout, "\t NATIVE (default)\n"); - (void) fprintf(stdout, "\t UNIX\n\n"); - (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER:\n"); - (void) fprintf(stdout, "\t String denoting the output-byte-order. Ignored\n"); - (void) fprintf(stdout, "\t if the OUTPUT-ARCHITECTURE is not specified or\n"); - (void) fprintf(stdout, "\t if it is IEEE, UNIX or STD. Can accept the \n"); - (void) fprintf(stdout, "\t following values.\n"); - (void) fprintf(stdout, "\t BE (default)\n"); - (void) fprintf(stdout, "\t LE\n\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES:\n"); - (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n"); - (void) fprintf(stdout, "\t dimension sizes of the chunk for the no. of \n"); - (void) fprintf(stdout, "\t dimensions determined by rank. Required field\n"); - (void) fprintf(stdout, "\t to denote that the dataset will be stored with\n"); - (void) fprintf(stdout, "\t chunked storage. If this field is absent the\n"); - (void) fprintf(stdout, "\t dataset will be stored with contiguous storage.\n\n"); - (void) fprintf(stdout, "\t COMPRESSION-TYPE:\n"); - (void) fprintf(stdout, "\t String denoting the type of compression to be\n"); - (void) fprintf(stdout, "\t used with the chunked storage. Requires the\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES to be specified. The only \n"); - (void) fprintf(stdout, "\t currently supported compression method is GZIP. \n"); - (void) fprintf(stdout, "\t Will accept the following value\n"); - (void) fprintf(stdout, "\t GZIP\n\n"); - (void) fprintf(stdout, "\t COMPRESSION-PARAM:\n"); - (void) fprintf(stdout, "\t Integer used to denote compression level and \n"); - (void) fprintf(stdout, "\t this option is to be always specified when \n"); - (void) fprintf(stdout, "\t the COMPRESSION-TYPE option is specified. The\n"); - (void) fprintf(stdout, "\t values are applicable only to GZIP \n"); - (void) fprintf(stdout, "\t compression.\n"); - (void) fprintf(stdout, "\t Value 1-9: The level of Compression. \n"); - (void) fprintf(stdout, "\t 1 will result in the fastest \n"); - (void) fprintf(stdout, "\t compression while 9 will result in \n"); - (void) fprintf(stdout, "\t the best compression ratio. The default\n"); - (void) fprintf(stdout, "\t level of compression is 6.\n\n"); - (void) fprintf(stdout, "\t EXTERNAL-STORAGE:\n"); - (void) fprintf(stdout, "\t String to denote the name of the non-HDF5 file \n"); - (void) fprintf(stdout, "\t to store data to. Cannot be used if CHUNKED-\n"); - (void) fprintf(stdout, "\t DIMENSIONS or COMPRESSION-TYPE or EXTENDIBLE-\n"); - (void) fprintf(stdout, "\t DATASET is specified.\n"); - (void) fprintf(stdout, "\t Value <external-filename>: the name of the \n"); - (void) fprintf(stdout, "\t external file as a string to be used.\n\n"); - (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS:\n"); - (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n"); - (void) fprintf(stdout, "\t maximum dimension sizes of all the \n"); - (void) fprintf(stdout, "\t dimensions determined by rank. Requires the\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES to be specified. A value of \n"); - (void) fprintf(stdout, "\t -1 for any dimension implies UNLIMITED \n"); - (void) fprintf(stdout, "\t DIMENSION size for that particular dimension.\n\n"); - (void) fprintf(stdout, "\t EXAMPLES:\n"); - (void) fprintf(stdout, "\t 1. Configuration File may look like:\n\n"); - (void) fprintf(stdout, "\t PATH work h5 pkamat First-set\n"); - (void) fprintf(stdout, "\t INPUT-CLASS TEXTFP\n"); - (void) fprintf(stdout, "\t RANK 3\n"); - (void) fprintf(stdout, "\t DIMENSION-SIZES 5 2 4\n"); - (void) fprintf(stdout, "\t OUTPUT-CLASS FP\n"); - (void) fprintf(stdout, "\t OUTPUT-SIZE 64\n"); - (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE IEEE\n"); - (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER LE\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 \n\n"); - (void) fprintf(stdout, "\t The above configuration will accept a floating point array \n"); - (void) fprintf(stdout, "\t (5 x 2 x 4) in an ASCII file with the rank and dimension sizes \n"); - (void) fprintf(stdout, "\t specified and will save it in a chunked data-set (of pattern \n"); - (void) fprintf(stdout, "\t 2 X 2 X 2) of 64-bit floating point in the little-endian order \n"); - (void) fprintf(stdout, "\t and IEEE architecture. The dataset will be stored at\n"); - (void) fprintf(stdout, "\t \"/work/h5/pkamat/First-set\"\n\n"); - (void) fprintf(stdout, "\t 2. Another configuration could be:\n\n"); - (void) fprintf(stdout, "\t PATH Second-set\n"); - (void) fprintf(stdout, "\t INPUT-CLASS IN \n"); - (void) fprintf(stdout, "\t RANK 5\n"); - (void) fprintf(stdout, "\t DIMENSION-SIZES 6 3 5 2 4\n"); - (void) fprintf(stdout, "\t OUTPUT-CLASS IN\n"); - (void) fprintf(stdout, "\t OUTPUT-SIZE 32\n"); - (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 2 2\n"); - (void) fprintf(stdout, "\t EXTENDIBLE-DATASET 1 3 \n"); - (void) fprintf(stdout, "\t COMPRESSION-TYPE GZIP\n"); - (void) fprintf(stdout, "\t COMPRESSION-PARAM 7\n\n\n"); - (void) fprintf(stdout, "\t The above configuration will accept an integer array \n"); - (void) fprintf(stdout, "\t (6 X 3 X 5 x 2 x 4) in a binary file with the rank and \n"); - (void) fprintf(stdout, "\t dimension sizes specified and will save it in a chunked data-set\n"); - (void) fprintf(stdout, "\t (of pattern 2 X 2 X 2 X 2 X 2) of 32-bit floating point in \n"); - (void) fprintf(stdout, "\t native format (as output-architecture is not specified). The \n"); - (void) fprintf(stdout, "\t first and the third dimension will be defined as unlimited. The \n"); - (void) fprintf(stdout, "\t data-set will be compressed using GZIP and a compression level \n"); - (void) fprintf(stdout, "\t of 7.\n"); - (void) fprintf(stdout, "\t The dataset will be stored at \"/Second-set\"\n\n"); - return; + (void) fprintf(stdout, "\t -h[elp]:\n"); + (void) fprintf(stdout, + "\t Prints this summary of usage, and exits.\n\n"); + (void) fprintf(stdout, "\t <infile(s)>:\n"); + (void) fprintf(stdout, + "\t Name of the Input file(s), containing a \n"); + (void) fprintf(stdout, + "\t single n-dimensional floating point or integer array \n"); + (void) fprintf(stdout, + "\t in either ASCII text, native floating point(32-bit \n"); + (void) fprintf(stdout, + "\t or 64-bit) or native integer(8-bit or 16-bit or \n"); + (void) fprintf(stdout, + "\t 32-bit or 64-bit). Data to be specified in the order\n"); + (void) fprintf(stdout, "\t of fastest changing dimensions first.\n\n"); + (void) fprintf(stdout, "\t -c[config] <configfile>:\n"); + (void) fprintf(stdout, + "\t Every input file should be associated with a \n"); + (void) fprintf(stdout, + "\t configuration file and this is done by the -c option.\n"); + (void) fprintf(stdout, + "\t <configfile> is the name of the configuration file.\n"); + (void) fprintf(stdout, "\t (See Section \"CONFIGURATION FILE\")\n\n"); + (void) fprintf(stdout, "\t -o[utfile] <outfile>:\n"); + (void) fprintf(stdout, + "\t Name of the HDF5 output file. Data from one or more \n"); + (void) fprintf(stdout, + "\t input files are stored as one or more data sets in \n"); + (void) fprintf(stdout, + "\t <outfile>. The output file may be an existing file or \n"); + (void) fprintf(stdout, + "\t it maybe new in which case it will be created.\n\n\n"); + (void) fprintf(stdout, "\t CONFIGURATION FILE:\n"); + (void) fprintf(stdout, + "\t The configuration file is an ASCII text file and must be \n"); + (void) fprintf(stdout, + "\t organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n"); + (void) fprintf(stdout, "\t line.\n\n"); + (void) fprintf(stdout, + "\t The configuration file may have the following keywords each \n"); + (void) fprintf(stdout, "\t followed by an acceptable value.\n\n"); + (void) fprintf(stdout, "\t Required KEYWORDS:\n"); + (void) fprintf(stdout, "\t PATH\n"); + (void) fprintf(stdout, "\t INPUT-CLASS\n"); + (void) fprintf(stdout, "\t INPUT-SIZE\n"); + (void) fprintf(stdout, "\t RANK\n"); + (void) fprintf(stdout, "\t DIMENSION-SIZES\n"); + (void) fprintf(stdout, "\t OUTPUT-CLASS\n"); + (void) fprintf(stdout, "\t OUTPUT-SIZE\n\n"); + (void) fprintf(stdout, "\t Optional KEYWORDS:\n"); + (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE\n"); + (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER\n"); + (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n"); + (void) fprintf(stdout, "\t COMPRESSION-TYPE\n"); + (void) fprintf(stdout, "\t COMPRESSION-PARAM\n"); + (void) fprintf(stdout, "\t EXTERNAL-STORAGE\n"); + (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS\n\n\n"); + (void) fprintf(stdout, "\t Values for keywords:\n"); + (void) fprintf(stdout, "\t PATH:\n"); + (void) fprintf(stdout, "\t Strings separated by spaces to represent\n"); + (void) fprintf(stdout, "\t the path of the data-set. If the groups in\n"); + (void) fprintf(stdout, + "\t the path do no exist, they will be created. \n"); + (void) fprintf(stdout, "\t For example,\n"); + (void) fprintf(stdout, "\t PATH grp1/grp2/dataset1\n"); + (void) fprintf(stdout, "\t PATH: keyword\n"); + (void) fprintf(stdout, "\t grp1: group under the root. If\n"); + (void) fprintf(stdout, "\t non-existent will be created.\n"); + (void) fprintf(stdout, "\t grp2: group under grp1. If \n"); + (void) fprintf(stdout, "\t non-existent will be created \n"); + (void) fprintf(stdout, "\t under grp1.\n"); + (void) fprintf(stdout, "\t dataset1: the name of the data-set \n"); + (void) fprintf(stdout, "\t to be created.\n\n"); + (void) fprintf(stdout, "\t INPUT-CLASS:\n"); + (void) fprintf(stdout, "\t String denoting the type of input data.\n"); + (void) fprintf(stdout, "\t (\"TEXTIN\", \"TEXTFP\", \"FP\", \"IN\", \n"); + (void) fprintf(stdout, "\t \"STR\", \"TEXTUIN\", \"UIN\"). \n"); + (void) fprintf(stdout, + "\t INPUT-CLASS \"TEXTIN\" denotes an ASCII text \n"); + (void) fprintf(stdout, + "\t file with signed integer data in ASCII form,\n"); + (void) fprintf(stdout, + "\t INPUT-CLASS \"TEXTUIN\" denotes an ASCII text \n"); + (void) fprintf(stdout, + "\t file with unsigned integer data in ASCII form,\n"); + (void) fprintf(stdout, + "\t \"TEXTFP\" denotes an ASCII text file containing\n"); + (void) fprintf(stdout, "\t floating point data in the fixed notation\n"); + (void) fprintf(stdout, "\t (325.34),\n"); + (void) fprintf(stdout, + "\t \"FP\" denotes a floating point binary file,\n"); + (void) fprintf(stdout, + "\t \"IN\" denotes a signed integer binary file,\n"); + (void) fprintf(stdout, + "\t \"UIN\" denotes an unsigned integer binary file,\n"); + (void) fprintf(stdout, "\t & \"STR\" denotes an ASCII text file the \n"); + (void) fprintf(stdout, + "\t contents of which should be stored as an 1-D \n"); + (void) fprintf(stdout, "\t array of strings.\n"); + (void) fprintf(stdout, "\t If INPUT-CLASS is \"STR\", then RANK, \n"); + (void) fprintf(stdout, + "\t DIMENSION-SIZES, OUTPUT-CLASS, OUTPUT-SIZE, \n"); + (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE and OUTPUT-BYTE-ORDER \n"); + (void) fprintf(stdout, "\t will be ignored.\n\n\n"); + (void) fprintf(stdout, "\t INPUT-SIZE:\n"); + (void) fprintf(stdout, + "\t Integer denoting the size of the input data \n"); + (void) fprintf(stdout, "\t (8, 16, 32, 64). \n\n"); + (void) fprintf(stdout, "\t For floating point,\n"); + (void) fprintf(stdout, "\t INPUT-SIZE can be 32 or 64.\n"); + (void) fprintf(stdout, "\t For integers (signed and unsigned)\n"); + (void) fprintf(stdout, "\t INPUT-SIZE can be 8, 16, 32 or 64.\n\n"); + (void) fprintf(stdout, "\t RANK:\n"); + (void) fprintf(stdout, + "\t Integer denoting the number of dimensions.\n\n"); + (void) fprintf(stdout, "\t DIMENSION-SIZES:\n"); + (void) fprintf(stdout, + "\t Integers separated by spaces to denote the \n"); + (void) fprintf(stdout, "\t dimension sizes for the no. of dimensions \n"); + (void) fprintf(stdout, "\t determined by rank.\n\n"); + (void) fprintf(stdout, "\t OUTPUT-CLASS:\n"); + (void) fprintf(stdout, + "\t String dentoting data type of the dataset to \n"); + (void) fprintf(stdout, "\t be written (\"IN\",\"FP\", \"UIN\")\n\n"); + (void) fprintf(stdout, "\t OUTPUT-SIZE:\n"); + (void) fprintf(stdout, + "\t Integer denoting the size of the data in the \n"); + (void) fprintf(stdout, "\t output dataset to be written.\n"); + (void) fprintf(stdout, + "\t If OUTPUT-CLASS is \"FP\", OUTPUT-SIZE can be \n"); + (void) fprintf(stdout, "\t 32 or 64.\n"); + (void) fprintf(stdout, + "\t If OUTPUT-CLASS is \"IN\" or \"UIN\", OUTPUT-SIZE\n"); + (void) fprintf(stdout, "\t can be 8, 16, 32 or 64.\n\n"); + (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE:\n"); + (void) fprintf(stdout, "\t STRING denoting the type of output \n"); + (void) fprintf(stdout, + "\t architecture. Can accept the following values\n"); + (void) fprintf(stdout, "\t STD\n"); + (void) fprintf(stdout, "\t IEEE\n"); + (void) fprintf(stdout, "\t INTEL\n"); + (void) fprintf(stdout, "\t CRAY\n"); + (void) fprintf(stdout, "\t MIPS\n"); + (void) fprintf(stdout, "\t ALPHA\n"); + (void) fprintf(stdout, "\t NATIVE (default)\n"); + (void) fprintf(stdout, "\t UNIX\n\n"); + (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER:\n"); + (void) fprintf(stdout, + "\t String denoting the output-byte-order. Ignored\n"); + (void) fprintf(stdout, + "\t if the OUTPUT-ARCHITECTURE is not specified or\n"); + (void) fprintf(stdout, "\t if it is IEEE, UNIX or STD. Can accept the \n"); + (void) fprintf(stdout, "\t following values.\n"); + (void) fprintf(stdout, "\t BE (default)\n"); + (void) fprintf(stdout, "\t LE\n\n"); + (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES:\n"); + (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n"); + (void) fprintf(stdout, + "\t dimension sizes of the chunk for the no. of \n"); + (void) fprintf(stdout, + "\t dimensions determined by rank. Required field\n"); + (void) fprintf(stdout, + "\t to denote that the dataset will be stored with\n"); + (void) fprintf(stdout, + "\t chunked storage. If this field is absent the\n"); + (void) fprintf(stdout, + "\t dataset will be stored with contiguous storage.\n\n"); + (void) fprintf(stdout, "\t COMPRESSION-TYPE:\n"); + (void) fprintf(stdout, + "\t String denoting the type of compression to be\n"); + (void) fprintf(stdout, "\t used with the chunked storage. Requires the\n"); + (void) fprintf(stdout, + "\t CHUNKED-DIMENSION-SIZES to be specified. The only \n"); + (void) fprintf(stdout, + "\t currently supported compression method is GZIP. \n"); + (void) fprintf(stdout, "\t Will accept the following value\n"); + (void) fprintf(stdout, "\t GZIP\n\n"); + (void) fprintf(stdout, "\t COMPRESSION-PARAM:\n"); + (void) fprintf(stdout, + "\t Integer used to denote compression level and \n"); + (void) fprintf(stdout, "\t this option is to be always specified when \n"); + (void) fprintf(stdout, + "\t the COMPRESSION-TYPE option is specified. The\n"); + (void) fprintf(stdout, "\t values are applicable only to GZIP \n"); + (void) fprintf(stdout, "\t compression.\n"); + (void) fprintf(stdout, "\t Value 1-9: The level of Compression. \n"); + (void) fprintf(stdout, "\t 1 will result in the fastest \n"); + (void) fprintf(stdout, "\t compression while 9 will result in \n"); + (void) fprintf(stdout, "\t the best compression ratio. The default\n"); + (void) fprintf(stdout, "\t level of compression is 6.\n\n"); + (void) fprintf(stdout, "\t EXTERNAL-STORAGE:\n"); + (void) fprintf(stdout, + "\t String to denote the name of the non-HDF5 file \n"); + (void) fprintf(stdout, + "\t to store data to. Cannot be used if CHUNKED-\n"); + (void) fprintf(stdout, + "\t DIMENSIONS or COMPRESSION-TYPE or EXTENDIBLE-\n"); + (void) fprintf(stdout, "\t DATASET is specified.\n"); + (void) fprintf(stdout, "\t Value <external-filename>: the name of the \n"); + (void) fprintf(stdout, "\t external file as a string to be used.\n\n"); + (void) fprintf(stdout, "\t MAXIMUM-DIMENSIONS:\n"); + (void) fprintf(stdout, "\t Integers separated by spaces to denote the \n"); + (void) fprintf(stdout, "\t maximum dimension sizes of all the \n"); + (void) fprintf(stdout, "\t dimensions determined by rank. Requires the\n"); + (void) fprintf(stdout, + "\t CHUNKED-DIMENSION-SIZES to be specified. A value of \n"); + (void) fprintf(stdout, "\t -1 for any dimension implies UNLIMITED \n"); + (void) fprintf(stdout, + "\t DIMENSION size for that particular dimension.\n\n"); + (void) fprintf(stdout, "\t EXAMPLES:\n"); + (void) fprintf(stdout, "\t 1. Configuration File may look like:\n\n"); + (void) fprintf(stdout, "\t PATH work h5 pkamat First-set\n"); + (void) fprintf(stdout, "\t INPUT-CLASS TEXTFP\n"); + (void) fprintf(stdout, "\t RANK 3\n"); + (void) fprintf(stdout, "\t DIMENSION-SIZES 5 2 4\n"); + (void) fprintf(stdout, "\t OUTPUT-CLASS FP\n"); + (void) fprintf(stdout, "\t OUTPUT-SIZE 64\n"); + (void) fprintf(stdout, "\t OUTPUT-ARCHITECTURE IEEE\n"); + (void) fprintf(stdout, "\t OUTPUT-BYTE-ORDER LE\n"); + (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 \n\n"); + (void) fprintf(stdout, + "\t The above configuration will accept a floating point array \n"); + (void) fprintf(stdout, + "\t (5 x 2 x 4) in an ASCII file with the rank and dimension sizes \n"); + (void) fprintf(stdout, + "\t specified and will save it in a chunked data-set (of pattern \n"); + (void) fprintf(stdout, + "\t 2 X 2 X 2) of 64-bit floating point in the little-endian order \n"); + (void) fprintf(stdout, + "\t and IEEE architecture. The dataset will be stored at\n"); + (void) fprintf(stdout, "\t \"/work/h5/pkamat/First-set\"\n\n"); + (void) fprintf(stdout, "\t 2. Another configuration could be:\n\n"); + (void) fprintf(stdout, "\t PATH Second-set\n"); + (void) fprintf(stdout, "\t INPUT-CLASS IN \n"); + (void) fprintf(stdout, "\t RANK 5\n"); + (void) fprintf(stdout, "\t DIMENSION-SIZES 6 3 5 2 4\n"); + (void) fprintf(stdout, "\t OUTPUT-CLASS IN\n"); + (void) fprintf(stdout, "\t OUTPUT-SIZE 32\n"); + (void) fprintf(stdout, "\t CHUNKED-DIMENSION-SIZES 2 2 2 2 2\n"); + (void) fprintf(stdout, "\t EXTENDIBLE-DATASET 1 3 \n"); + (void) fprintf(stdout, "\t COMPRESSION-TYPE GZIP\n"); + (void) fprintf(stdout, "\t COMPRESSION-PARAM 7\n\n\n"); + (void) fprintf(stdout, + "\t The above configuration will accept an integer array \n"); + (void) fprintf(stdout, + "\t (6 X 3 X 5 x 2 x 4) in a binary file with the rank and \n"); + (void) fprintf(stdout, + "\t dimension sizes specified and will save it in a chunked data-set\n"); + (void) fprintf(stdout, + "\t (of pattern 2 X 2 X 2 X 2 X 2) of 32-bit floating point in \n"); + (void) fprintf(stdout, + "\t native format (as output-architecture is not specified). The \n"); + (void) fprintf(stdout, + "\t first and the third dimension will be defined as unlimited. The \n"); + (void) fprintf(stdout, + "\t data-set will be compressed using GZIP and a compression level \n"); + (void) fprintf(stdout, "\t of 7.\n"); + (void) fprintf(stdout, + "\t The dataset will be stored at \"/Second-set\"\n\n"); + return; } - -void -usage(char *name) +void usage(char *name) { - (void) fprintf(stdout, "\nUsage:\t%s -h[elp], OR\n", name); - (void) fprintf(stdout, "\t%s <infile> -c[onfig] <configfile> \ + (void) fprintf(stdout, "\nUsage:\t%s -h[elp], OR\n", name); + (void) fprintf(stdout, + "\t%s <infile> -c[onfig] <configfile> \ [<infile> -c[config] <configfile>...] -o[utfile] <outfile> \n\n", name); - return; + return; } diff --git a/tools/h5import/h5import.h b/tools/h5import/h5import.h index 9e4f6e8..05de476 100755 --- a/tools/h5import/h5import.h +++ b/tools/h5import/h5import.h @@ -74,111 +74,110 @@ struct path_info { - char group[MAX_GROUPS_IN_PATH][MAX_PATH_NAME_LENGTH]; - int count; + char group[MAX_GROUPS_IN_PATH][MAX_PATH_NAME_LENGTH]; + int count; }; struct Input { - struct path_info path; - int inputClass; - int inputSize; - int rank; - hsize_t* sizeOfDimension; - int outputClass; - int outputSize; - int outputArchitecture; - int outputByteOrder; - hsize_t* sizeOfChunk; - hsize_t* maxsizeOfDimension; - int compressionType; - int compressionParam; - char *externFilename; - VOIDP data; - int configOptionVector[NUM_KEYS]; + struct path_info path; + int inputClass; + int inputSize; + int rank; + hsize_t* sizeOfDimension; + int outputClass; + int outputSize; + int outputArchitecture; + int outputByteOrder; + hsize_t* sizeOfChunk; + hsize_t* maxsizeOfDimension; + int compressionType; + int compressionParam; + char *externFilename; + VOIDP data; + int configOptionVector[NUM_KEYS]; }; struct infilesformat { - char datafile[255]; - char configfile[255]; - struct Input in; - int config; /* Configfile present? No - 0. Yes - 1 */ + char datafile[255]; + char configfile[255]; + struct Input in; + int config; /* Configfile present? No - 0. Yes - 1 */ }; struct Options { - struct infilesformat infiles[30]; /* structure to hold the list of input file names. Limited to 30*/ - char outfile[256]; /* output file name */ - int fcount; /* number of input files */ + struct infilesformat infiles[30]; /* structure to hold the list of input file names. Limited to 30*/ + char outfile[256]; /* output file name */ + int fcount; /* number of input files */ }; char keytable[NUM_KEYS][30] = { - "PATH", - "INPUT-CLASS", - "INPUT-SIZE", - "RANK", - "DIMENSION-SIZES", - "OUTPUT-CLASS", - "OUTPUT-SIZE", - "OUTPUT-ARCHITECTURE", - "OUTPUT-BYTE-ORDER", - "CHUNKED-DIMENSION-SIZES", - "COMPRESSION-TYPE", - "COMPRESSION-PARAM", - "EXTERNAL-STORAGE", - "MAXIMUM-DIMENSIONS" + "PATH", + "INPUT-CLASS", + "INPUT-SIZE", + "RANK", + "DIMENSION-SIZES", + "OUTPUT-CLASS", + "OUTPUT-SIZE", + "OUTPUT-ARCHITECTURE", + "OUTPUT-BYTE-ORDER", + "CHUNKED-DIMENSION-SIZES", + "COMPRESSION-TYPE", + "COMPRESSION-PARAM", + "EXTERNAL-STORAGE", + "MAXIMUM-DIMENSIONS" }; static int state_table[15][8] = { - /* token ordering: - FILNAME OPT_o OPT_c OPT_h OPT_d OPT_p OPT_t OPT_s */ + /* token ordering: FILNAME OPT_o OPT_c OPT_h OPT_d OPT_p OPT_t OPT_s */ - /* state 0: start */ - {1, ERR, ERR, 6, ERR, ERR, ERR, ERR}, + /* state 0: start */ + {1, ERR, ERR, 6, ERR, ERR, ERR, ERR}, - /* state 1: input files */ - {ERR, ERR, 2, ERR, 7, ERR, ERR, ERR}, + /* state 1: input files */ + {ERR, ERR, 2, ERR, 7, ERR, ERR, ERR}, - /* state 2: -c[onfigfile] */ - {3, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 2: -c[onfigfile] */ + {3, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 3: configfile */ - {1, 4, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 3: configfile */ + {1, 4, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 4: -o[utfile] */ - {5, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 4: -o[utfile] */ + {5, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 5: outfile */ - {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 5: outfile */ + {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 6: -h[elp] */ - {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 6: -h[elp] */ + {ERR, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 7: -d[ims] */ - {8, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 7: -d[ims] */ + {8, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 8: dimensions */ - {1, 4, ERR, ERR, ERR, 9, 11, 13}, + /* state 8: dimensions */ + {1, 4, ERR, ERR, ERR, 9, 11, 13}, - /* state 9: -p[ath] */ - {10, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 9: -p[ath] */ + {10, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 10: path name */ - {1, 4, ERR, ERR, ERR, ERR, 11, 13}, + /* state 10: path name */ + {1, 4, ERR, ERR, ERR, ERR, 11, 13}, - /* state 11: -t[ype] */ - {12, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 11: -t[ype] */ + {12, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 12: data type */ - {1, 4, ERR, ERR, ERR, ERR, ERR, 13}, + /* state 12: data type */ + {1, 4, ERR, ERR, ERR, ERR, ERR, 13}, - /* state 13: -s[ize] */ - {14, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, + /* state 13: -s[ize] */ + {14, ERR, ERR, ERR, ERR, ERR, ERR, ERR}, - /* state 14: data size */ - {1, 4, ERR, ERR, ERR, ERR, ERR, ERR} + /* state 14: data size */ + {1, 4, ERR, ERR, ERR, ERR, ERR, ERR} }; @@ -193,39 +192,39 @@ void help(char *); static int gtoken(char *s); static int process(struct Options *opt); -static int processConfigurationFile(char *infile, struct Input *in, FILE **strm); +static int processConfigurationFile(char *infile, struct Input *in); static int mapKeywordToIndex(char *key); static int parsePathInfo(struct path_info *path, char *strm); static int parseDimensions(struct Input *in, char *strm); static int getInputSize(struct Input *in, int ival); static int getInputClass(struct Input *in, char * strm); static int InputClassStrToInt(char *temp); -static int getRank(struct Input *in, FILE** strm); -static int getDimensionSizes(struct Input *in, FILE** strm); -static int getOutputSize(struct Input *in, FILE** strm); -static int getOutputClass(struct Input *in, FILE** strm); +static int getRank(struct Input *in, FILE *strm); +static int getDimensionSizes(struct Input *in, FILE *strm); +static int getOutputSize(struct Input *in, FILE *strm); +static int getOutputClass(struct Input *in, FILE *strm); static int OutputClassStrToInt(char *temp); -static int getOutputArchitecture(struct Input *in, FILE** strm); +static int getOutputArchitecture(struct Input *in, FILE *strm); static int OutputArchStrToInt(char *temp); -static int getOutputByteOrder(struct Input *in, FILE** strm); +static int getOutputByteOrder(struct Input *in, FILE *strm); static int OutputByteOrderStrToInt(char *temp); -static int getChunkedDimensionSizes(struct Input *in, FILE **strm); -static int getCompressionType(struct Input *in, FILE** strm); +static int getChunkedDimensionSizes(struct Input *in, FILE *strm); +static int getCompressionType(struct Input *in, FILE *strm); static int CompressionTypeStrToInt(char *temp); -static int getCompressionParameter(struct Input *in, FILE** strm); -static int getExternalFilename(struct Input *in, FILE** strm); -static int getMaximumDimensionSizes(struct Input *in, FILE **strm); -static int processDataFile(char *infile, struct Input *in, FILE **strm, hid_t file_id); -static int readIntegerData(FILE **strm, struct Input *in); -static int readFloatData(FILE **strm, struct Input *in); +static int getCompressionParameter(struct Input *in, FILE *strm); +static int getExternalFilename(struct Input *in, FILE *strm); +static int getMaximumDimensionSizes(struct Input *in, FILE *strm); +static int processDataFile(char *infile, struct Input *in, hid_t file_id); +static int readIntegerData(FILE *strm, struct Input *in); +static int readFloatData(FILE *strm, struct Input *in); static int allocateIntegerStorage(struct Input *in); static int allocateFloatStorage(struct Input *in); hid_t createOutputDataType(struct Input *in); hid_t createInputDataType(struct Input *in); -static int readUIntegerData(FILE **strm, struct Input *in); +static int readUIntegerData(FILE *strm, struct Input *in); static int allocateUIntegerStorage(struct Input *in); -static int validateConfigurationParameters(struct Input * in); -static int processStrData(FILE **strm, struct Input *in, hid_t file_id); +static int validateConfigurationParameters(struct Input *in); +static int processStrData(FILE *strm, struct Input *in, hid_t file_id); #endif /* H5IMPORT_H__ */ |