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authorLarry Knox <lrknox@hdfgroup.org>2020-10-30 23:44:25 (GMT)
committerGitHub <noreply@github.com>2020-10-30 23:44:25 (GMT)
commitaaca30285228aa56d100734a667db5d4e7942087 (patch)
treeb15f830d5a65668b4e2640a036bba5241c754a2d
parentcd7f406cc17d6c787181da2eb26e108f31674839 (diff)
parent1971106e2ad08a7ef8550f25a91a6d1530de26c6 (diff)
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Merge pull request #63 from byrnHDF/hdf5_1_12
HDFFV-10868 merge from develop
-rw-r--r--java/src/hdf/hdf5lib/H5.java3126
-rw-r--r--java/src/hdf/hdf5lib/HDF5Constants.java484
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java25
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_append_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java24
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java25
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java25
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java21
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java21
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java4
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5Exception.java3
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java6
-rw-r--r--java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5A_info_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5E_error2_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java2
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java2
-rw-r--r--java/src/hdf/hdf5lib/structs/H5F_info2_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5G_info_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5L_info_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java25
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_info_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_native_info_t.java7
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_token_t.java5
-rw-r--r--java/src/hdf/hdf5lib/structs/H5_ih_info_t.java9
-rw-r--r--java/src/jni/h5Constants.c378
-rw-r--r--java/src/jni/h5sImp.c383
-rw-r--r--java/src/jni/h5sImp.h59
-rw-r--r--java/test/TestH5Sbasic.java138
-rw-r--r--java/test/testfiles/JUnit-TestH5Sbasic.txt16
-rw-r--r--release_docs/RELEASE.txt8
50 files changed, 4790 insertions, 322 deletions
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index b724382..3c5a124 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -241,10 +241,14 @@ public class H5 implements java.io.Serializable {
*/
public final static int LIB_VERSION[] = { 1, 12, 1 };
+ /**
+ * add system property to load library by path
+ */
public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
- // add system property to load library by name from library path, via
- // System.loadLibrary()
+ /**
+ * add system property to load library by name from library path, via System.loadLibrary()
+ */
public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName";
private static String s_libraryName;
private static boolean isLibraryLoaded = false;
@@ -257,6 +261,9 @@ public class H5 implements java.io.Serializable {
loadH5Lib();
}
+ /**
+ * load native library
+ */
public static void loadH5Lib() {
// Make sure that the library is loaded only once
if (isLibraryLoaded)
@@ -468,6 +475,35 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException;
+ /**
+ * H5set_free_list_limits
+ * Sets limits on the different kinds of free lists. Setting a value
+ * of -1 for a limit means no limit of that type. These limits are global
+ * for the entire library. Each "global" limit only applies to free lists
+ * of that type, so if an application sets a limit of 1 MB on each of the
+ * global lists, up to 3 MB of total storage might be allocated (1MB on
+ * each of regular, array and block type lists).
+ *
+ * The settings for block free lists are duplicated to factory free lists.
+ * Factory free list limits cannot be set independently currently.
+ *
+ * @param reg_global_lim
+ * The limit on all "regular" free list memory used
+ * @param reg_list_lim
+ * The limit on memory used in each "regular" free list
+ * @param arr_global_lim
+ * The limit on all "array" free list memory used
+ * @param arr_list_lim
+ * The limit on memory used in each "array" free list
+ * @param blk_global_lim
+ * The limit on all "block" free list memory used
+ * @param blk_list_lim
+ * The limit on memory used in each "block" free list
+ * @return a non-negative value if successful, along with the version information.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ */
public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim,
int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException;
@@ -1016,7 +1052,7 @@ public class H5 implements java.io.Serializable {
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
- * mem_type_id. The entire attribute is read into buf from the file.
+ * mem_type_id. The entire attribute is read into buffer from the file.
*
* @param attr_id
* IN: Identifier of an attribute to read.
@@ -1037,11 +1073,47 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param obj
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, obj, true);
@@ -1141,63 +1213,343 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of double from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of double to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of double from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of double to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_double(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of float from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of float to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of float from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of float to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_float(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of int from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of int to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of int from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of int to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_int(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of long from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of long to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of long from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of long to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_long(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of String from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of String to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of short from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of short to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of shortfrom the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of short to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_short(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of variable-lenght from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of variable-lenght to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of String from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of String to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of variable-lenght strings from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of variable-lenght strings to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of string from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
@@ -1270,12 +1622,48 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buf to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buf to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param obj
+ * IN: Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj)
throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -1353,60 +1741,286 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of double to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of double with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of double to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of double with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_double(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of float to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of float with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of float to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of float with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_float(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of int to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of int with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of int to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of int with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_int(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of long to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of long with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of long to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of long with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_long(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of short to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of short with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of short to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of short with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_short(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of string to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of string with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of variable-lenght to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of variable-lenght with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from
- * the application memory buffer buf into the file.
+ * the application memory buffer buffer of variable-lenght strings into the file.
*
* ---- contributed by Rosetta Biosoftware
*
@@ -1415,7 +2029,7 @@ public class H5 implements java.io.Serializable {
* @param mem_type_id
* Identifier of the memory datatype.
* @param buf
- * Buffer with data to be written to the file.
+ * Buffer of variable-lenght strings with data to be written to the file.
*
* @return a non-negative value if successful
*
@@ -1922,12 +2536,60 @@ public class H5 implements java.io.Serializable {
long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer buf.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer buf.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param obj
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -2043,65 +2705,411 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of type double.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of type double to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of type double.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of float.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of float.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of int.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of int.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of long.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of long.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of string.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of short.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of short.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of variable-lenght.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-lenght to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of string.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of variable-lenght strings.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-lenght strings to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
@@ -2170,7 +3178,7 @@ public class H5 implements java.io.Serializable {
/**
* H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * buf into the file.
+ * into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2198,12 +3206,60 @@ public class H5 implements java.io.Serializable {
long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param obj
+ * Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -2299,59 +3355,357 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-length with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
@@ -2628,7 +3982,7 @@ public class H5 implements java.io.Serializable {
/**
- * H5Epush2 pushes a new error record onto the error stack specified by estack_id.
+ * H5Epush pushes a new error record onto the error stack specified by estack_id.
*
* @param stack_id
* IN: Error stack identifier.
@@ -2657,6 +4011,31 @@ public class H5 implements java.io.Serializable {
{
H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg);
}
+ /**
+ * H5Epush2 pushes a new error record onto the error stack specified by estack_id.
+ *
+ * @param stack_id
+ * IN: Error stack identifier.
+ * @param file
+ * IN: Name of the file in which the error was detected.
+ * @param func
+ * IN: Name of the function in which the error was detected.
+ * @param line
+ * IN: Line number within the file at which the error was detected.
+ * @param cls_id
+ * IN: Error class identifier.
+ * @param maj_id
+ * IN: Major error identifier.
+ * @param min_id
+ * IN: Minor error identifier.
+ * @param msg
+ * IN: Error description string.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - file, func, or msg is null.
+ **/
public synchronized static native void H5Epush2(long stack_id, String file, String func, int line,
long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException;
@@ -2714,6 +4093,24 @@ public class H5 implements java.io.Serializable {
{
H5Ewalk2(stack_id, direction, func, client_data);
}
+ /**
+ * H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the
+ * function specified in func for each error along the way.
+ *
+ * @param stack_id
+ * IN: Error stack identifier.
+ * @param direction
+ * IN: Direction in which the error stack is to be walked.
+ * @param func
+ * IN: Function to be called for each error encountered.
+ * @param client_data
+ * IN: Data to be passed with func.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - func is null.
+ **/
public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data)
throws HDF5LibraryException, NullPointerException;
@@ -2950,6 +4347,19 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Fget_create_plist(long file_id) throws HDF5LibraryException;
+ /**
+ * H5Fget_filesize retrieves the file size of the HDF5 file. This function
+ * is called after an existing file is opened in order
+ * to learn the true size of the underlying file.
+ *
+ * @param file_id
+ * IN: File identifier for a currently-open HDF5 file
+ *
+ * @return the file size of the HDF5 file
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException;
/**
@@ -3598,37 +5008,118 @@ public class H5 implements java.io.Serializable {
return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME);
}
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
- return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, tokens, indx_type, -1);
+ return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1);
}
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param fno
+ * OUT: File number
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
- return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, indx_type, -1);
+ return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1);
}
- public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param fno
+ * OUT: File number
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ * @param indx_order
+ * IN: Index order for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException,
NullPointerException {
- if (oname == null) {
+ if (objNames == null) {
throw new NullPointerException("H5Gget_obj_info_full(): name array is null");
}
- if (otype == null) {
+ if (objTypes == null) {
throw new NullPointerException("H5Gget_obj_info_full(): object type array is null");
}
- if (oname.length == 0) {
+ if (objNames.length == 0) {
throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero");
}
- if (oname.length != otype.length) {
+ if (objNames.length != objTypes.length) {
throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different");
}
if (ltype == null)
- ltype = new int[otype.length];
+ ltype = new int[objTypes.length];
if (fno == null)
fno = new long[tokens.length];
@@ -3639,15 +5130,15 @@ public class H5 implements java.io.Serializable {
if (indx_order < 0)
indx_order = HDF5Constants.H5_ITER_INC;
- log.trace("H5Gget_obj_info_full: oname_len={}", oname.length);
- int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type,
+ log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length);
+ int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type,
indx_order);
- for (int indx = 0; indx < oname.length; indx++)
- log.trace("H5Gget_obj_info_full: oname={}", oname[indx]);
+ for (int indx = 0; indx < objNames.length; indx++)
+ log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]);
return status;
}
- private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype,
+ private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException,
NullPointerException;
@@ -3663,9 +5154,9 @@ public class H5 implements java.io.Serializable {
* @param idx
* IN: the index of the object to iterate.
* @param oname
- * the name of the object [OUT]
+ * OUT: the name of the object
* @param type
- * the type of the object [OUT]
+ * OUT: the type of the object
*
* @return non-negative if successful, -1 if not.
*
@@ -3866,13 +5357,40 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
+ /**
+ * H5Iget_file_id obtains the file ID specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the file ID.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException;
+ /**
+ * H5Iget_name_long retrieves the name of an object specified by the identifier, obj_id.
+ * @deprecated
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ * @param name
+ * OUT: Attribute name buffer.
+ * @param size
+ * IN: Maximum length of the name to retrieve.
+ *
+ * @return the length of the name retrieved.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
@Deprecated
public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Iget_name_str retrieves the name of an object specified by the identifier, obj_id.
+ * H5Iget_name retrieves the name of an object specified by the identifier, obj_id.
*
* @param obj_id
* IN: Identifier of the object.
@@ -3885,10 +5403,44 @@ public class H5 implements java.io.Serializable {
public synchronized static native String H5Iget_name(long obj_id)
throws HDF5LibraryException;
+ /**
+ * H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Idec_ref decrements the reference count specified by the identifier, obj_id.
+ * If the reference count for an ID reaches zero, the object will be closed.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Iinc_ref increments the reference count specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -5179,7 +6731,7 @@ public class H5 implements java.io.Serializable {
return id;
}
- public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
+ private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -5210,8 +6762,30 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException;
+ /**
+ * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be corked.
+ **/
public synchronized static native void H5Odisable_mdc_flushes(long object_id);
+ /**
+ * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be uncorked.
+ **/
public synchronized static native void H5Oenable_mdc_flushes(long object_id);
+ /**
+ * H5Oare_mdc_flushes_disabled retrieve the object's "cork" status.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be flushed.
+ *
+ * @return the cork status
+ * TRUE if mdc flushes for the object is disabled
+ * FALSE if mdc flushes for the object is not disabled
+ **/
public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id);
// /////// unimplemented ////////
@@ -5364,6 +6938,7 @@ public class H5 implements java.io.Serializable {
* IN: First property object to be compared
* @param plid2
* IN: Second property object to be compared
+ *
* @return positive value if equal; zero if unequal, a negative value if failed
*
* @exception HDF5LibraryException
@@ -5371,6 +6946,19 @@ public class H5 implements java.io.Serializable {
*/
public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException;
+ /**
+ * H5Pequal determines if two property lists or classes are equal
+ *
+ * @param plid1
+ * IN: First property object to be compared
+ * @param plid2
+ * IN: Second property object to be compared
+ *
+ * @return TRUE if equal, FALSE if unequal
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ */
public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException {
if (H5Pequal(plid1, plid2) == 1)
return true;
@@ -5456,7 +7044,7 @@ public class H5 implements java.io.Serializable {
return _H5Pclose_class(plid);
}
- public synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException;
+ private synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException;
/**
* H5Pclose terminates access to a property list.
@@ -5524,6 +7112,19 @@ public class H5 implements java.io.Serializable {
// Define property list iteration function type
// typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data);
+ /**
+ * H5Pcreate_class_nocb creates an new property class with no callback functions.
+ *
+ * @param parent_class
+ * IN: Identifier of the parent property class.
+ * @param name
+ * IN: Name of the property class.
+ *
+ * @return a property list identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException {
long id = _H5Pcreate_class_nocb(parent_class, name);
if (id > 0) {
@@ -5550,17 +7151,69 @@ public class H5 implements java.io.Serializable {
// private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data,
// H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException;
+ /**
+ * H5Pregister2_nocb registers a property list with no callback functions.
+ *
+ * @param plist_class
+ * IN: Identifier of the property list.
+ * @param name
+ * IN: Name of the property.
+ * @param size
+ * IN: Size the property value.
+ * @param def_value
+ * IN: Defaul value of the property
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException;
// public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set,
// H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ /**
+ * H5Pinsert2_nocb inserts a property list with no callback functions.
+ *
+ * @param plist
+ * IN: Identifier of the property list.
+ * @param name
+ * IN: Name of the property.
+ * @param size
+ * IN: Size the property value.
+ * @param value
+ * IN: Defaul value of the property
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException;
// public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get,
// H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ /**
+ * H5Piterate iterates over the properties in a property list or class
+ *
+ * @param plist
+ * IN: ID of property object to iterate over
+ * @param idx
+ * IN/OUT: index of the property to begin with
+ * @param op
+ * IN: function to be called with each property iterated over.
+ * @param op_data
+ * IN: iteration data from user
+ *
+ * @return
+ * the return value of the last call to op if it was non-zero,
+ * zero if all properties have been processed
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - size is null.
+ *
+ **/
public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException;
// /////// Object creation property list (OCPL) routines ///////
@@ -5573,7 +7226,7 @@ public class H5 implements java.io.Serializable {
* @param attributes
* The maximun and minimum no. of attributes to be stored.
*
- * <pre>
+ * <pre>
* attributes[0] = The maximum number of attributes to be stored in compact storage
* attributes[1] = The minimum number of attributes to be stored in dense storage
* </pre>
@@ -5673,6 +7326,51 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times)
throws HDF5LibraryException;
+ /**
+ * H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline
+ * depending on whether PLIST is a dataset creation or dataset
+ * transfer property list. The FLAGS argument specifies certain
+ * general properties of the filter and is documented below.
+ * The CD_VALUES is an array of CD_NELMTS integers which are
+ * auxiliary data for the filter. The integer vlues will be
+ * stored in the dataset object header as part of the filter
+ * information.
+ *<p>
+ * The FLAGS argument is a bit vector of the following fields:
+ *<p>
+ * H5Z_FLAG_OPTIONAL(0x0001)
+ * If this bit is set then the filter is optional. If the
+ * filter fails during an H5Dwrite() operation then the filter
+ * is just excluded from the pipeline for the chunk for which it
+ * failed; the filter will not participate in the pipeline
+ * during an H5Dread() of the chunk. If this bit is clear and
+ * the filter fails then the entire I/O operation fails.
+ * If this bit is set but encoding is disabled for a filter,
+ * attempting to write will generate an error.
+ *<p>
+ * Note: This function currently supports only the permanent filter
+ * pipeline. That is, PLIST_ID must be a dataset creation
+ * property list.
+ *
+ * @param plist
+ * IN: Property list identifier.
+ * @param filter
+ * IN: Filter to be modified to the pipeline.
+ * @param flags
+ * IN: Bit vector specifying certain general properties of the filter.
+ * @param cd_nelmts
+ * IN: Number of elements in cd_values
+ * @param cd_values
+ * IN: Auxiliary data for the filter.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name or an array is null.
+ *
+ **/
public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts,
int[] cd_values) throws HDF5LibraryException, NullPointerException;
@@ -5844,9 +7542,37 @@ public class H5 implements java.io.Serializable {
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pall_filters_avail query to verify that all the filters set
+ * in the dataset creation property list are available currently.
+ *
+ * @param dcpl_id
+ * IN: Property list identifier.
+ *
+ * @return
+ * TRUE if all filters available
+ * FALSE if one or more filters not currently available.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Premove_filter deletes a filter from the dataset creation property list;
+ * deletes all filters if filter is H5Z_FILTER_NONE
+ *
+ * @param obj_id
+ * IN: Property list identifier.
+ * @param filter
+ * IN: Filter identifier.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException;
/**
@@ -5864,6 +7590,18 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException;
+ /**
+ * H5Pset_fletcher32 sets Fletcher32 checksum of EDC for a dataset creation
+ * property list or group creation property list.
+ *
+ * @param plist
+ * IN: Property list identifier.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException,
NullPointerException;
@@ -6334,11 +8072,35 @@ public class H5 implements java.io.Serializable {
*/
public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException;
- public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pget_family_offset gets offset for family driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the offset.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException;
- public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_family_offset sets the offset for family driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param offset
+ * IN: the offset value
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException;
/**
* Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes
@@ -6389,9 +8151,8 @@ public class H5 implements java.io.Serializable {
double rdcc_w0) throws HDF5LibraryException;
/**
- * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list and
- * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is
- * used when the file is opened.
+ * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list.
+ * This configuration is used when the file is opened.
*
* @param plist_id
* IN: Identifier of the file access property list.
@@ -6403,6 +8164,19 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and
+ * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is
+ * used when the file is opened.
+ *
+ * @param plist_id
+ * IN: Identifier of the file access property list.
+ * @param config_ptr
+ * IN: H5AC_cache_config_t, the initial metadata cache configuration.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr)
throws HDF5LibraryException;
@@ -6437,10 +8211,35 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref)
throws HDF5LibraryException;
- public synchronized static native int H5Pget_fclose_degree(long plist_id) throws HDF5LibraryException,
+ /**
+ * H5Pget_fclose_degree returns the degree for the file close behavior for a file access
+ * property list.
+ *
+ * @param fapl_id
+ * IN File access property list
+ *
+ * @return the degree for the file close behavior
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException,
NullPointerException;
- public synchronized static native int H5Pset_fclose_degree(long plist, int degree) throws HDF5LibraryException,
+ /**
+ * H5Pset_fclose_degree sets the degree for the file close behavior.
+ *
+ * @param fapl_id
+ * IN File access property list
+ * @param degree
+ * IN the degree for the file close behavior
+ *
+ * @return non-negative if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException,
NullPointerException;
/**
@@ -6471,8 +8270,40 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException;
+ /**
+ * H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size
+ * property from a file access property list.
+ *
+ * @param fapl_id
+ * IN: Identifier for property list to query.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_sieve_buf_size Sets the maximum size of the data seive buffer used for file
+ * drivers which are capable of using data sieving. The data sieve
+ * buffer is used when performing I/O on datasets in the file. Using a
+ * buffer which is large anough to hold several pieces of the dataset
+ * being read in for hyperslab selections boosts performance by quite a
+ * bit.
+ * <p>
+ * The default value is set to 64KB, indicating that file I/O for raw data
+ * reads and writes will occur in at least 64KB blocks. Setting the value to 0
+ * with this function will turn off the data sieving
+ *
+ * @param fapl_id
+ * IN: Identifier of property list to modify.
+ * @param size
+ * IN: maximum size of the data seive buffer.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException;
/**
@@ -6767,6 +8598,25 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException,
NullPointerException, IllegalArgumentException;
+ /**
+ * H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset.
+ *
+ * @param plist
+ * IN: Identifier for property list to query.
+ * @param ndims
+ * IN: The number of dimensions of each chunk.
+ * @param dim
+ * IN: An array containing the size of each chunk.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5Exception
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - dims array is null.
+ * @exception IllegalArgumentException
+ * - dims &lt;=0
+ **/
public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception,
NullPointerException, IllegalArgumentException {
if (dim == null) {
@@ -7002,9 +8852,37 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException;
+ /**
+ * H5Pset_szip Sets up the use of the szip filter.
+ *
+ * @param plist
+ * IN: Dataset creation property list identifier.
+ * @param options_mask
+ * IN: Bit vector specifying certain general properties of the filter.
+ * @param pixels_per_block
+ * IN: Number of pixels in blocks
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_shuffle Sets up the use of the shuffle filter.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException,
NullPointerException;
@@ -7132,20 +9010,91 @@ public class H5 implements java.io.Serializable {
return retVal;
}
+ /**
+ * H5Pset_fill_value checks if the fill value is defined for a dataset creation property list.
+ *
+ * @param plist_id
+ * IN: Property list identifier.
+ * @param status
+ * IN: The fill value setting:
+ * H5D_FILL_VALUE_UNDEFINED
+ * H5D_FILL_VALUE_DEFAULT
+ * H5D_FILL_VALUE_USER_DEFINED
+ * H5D_FILL_VALUE_ERROR
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5Exception
+ * - Error converting data array
+ **/
public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_alloc_time Gets space allocation time for dataset during creation.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param alloc_time
+ * OUT: allocation time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_alloc_time Sets space allocation time for dataset during creation.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param alloc_time
+ * IN: allocation time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException,
NullPointerException;
- public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_fill_time Gets fill value writing time.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param fill_time
+ * OUT: fill time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException;
- public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_fill_time Sets the fill value writing time.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param fill_time
+ * IN: fill time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException;
/**
* H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list.
@@ -7445,6 +9394,20 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg)
throws HDF5LibraryException, IllegalArgumentException;
+ /**
+ * H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful;
+ * otherwise 0 on failure.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ *
+ * @return buffer size, in bytes, if successful; otherwise 0 on failure
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception IllegalArgumentException
+ * - plist is invalid.
+ **/
public synchronized static native long H5Pget_buffer_size(long plist)
throws HDF5LibraryException, IllegalArgumentException;
@@ -7475,11 +9438,33 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException,
IllegalArgumentException;
- public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pget_edc_check gets the error-detecting algorithm in use.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ *
+ * @return the error-detecting algorithm
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException;
- public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_edc_check sets the error-detecting algorithm.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ * @param check
+ * the error-detecting algorithm to use.
+ *
+ * @return non-negative if succeed
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException;
/**
* H5Pget_btree_ratio Get the B-tree split ratios for a dataset transfer property list.
@@ -7524,9 +9509,46 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right)
throws HDF5LibraryException;
+ /**
+ * H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size.
+ *
+ * @param dxpl_id
+ * IN: Dataset transfer property list identifier.
+ * @param vector_size
+ * OUT: hyper vector size.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_hyper_vector_size sets the number of
+ * "I/O vectors" (offset and length pairs) which are to be
+ * accumulated in memory before being issued to the lower levels
+ * of the library for reading or writing the actual data.
+ * Increasing the number should give better performance, but use
+ * more memory during hyperslab I/O. The vector size must be
+ * greater than 1.
+ *,p.
+ * The default is to use 1024 vectors for I/O during hyperslab
+ * reading/writing.
+ *
+ * @param dxpl_id
+ * IN: Dataset transfer property list identifier.
+ * @param vector_size
+ * IN: hyper vestor size.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size)
throws HDF5LibraryException, NullPointerException;
@@ -7724,8 +9746,32 @@ public class H5 implements java.io.Serializable {
// /////// String creation property list (STRCPL) routines ///////
+ /**
+ * H5Pget_char_encoding gets the character encoding of the string.
+ *
+ * @param plist_id
+ * IN: the property list identifier
+ *
+ * @return Returns the character encoding of the string.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_char_encoding sets the character encoding of the string.
+ *
+ * @param plist_id
+ * IN: the property list identifier
+ * @param encoding
+ * IN: the character encoding of the string
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding)
throws HDF5LibraryException;
@@ -7915,20 +9961,51 @@ public class H5 implements java.io.Serializable {
// /////// file drivers property list routines ///////
+ /**
+ * H5Pget_fapl_core retrieve H5FD_CORE I/O settings.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param increment
+ * OUT: how much to grow the memory each time
+ * @param backing_store
+ * OUT: write to file name on flush setting
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param increment
+ * IN: how much to grow the memory each time
+ * @param backing_store
+ * IN: write to file name on flush setting
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Pget_fapl_direct Retrieve direct I/O settings.
+ * H5Pget_fapl_direct queries properties set by the H5Pset_fapl_direct.
*
* @param fapl_id
* IN: File access property list identifier
* @param info
- * OUT: Returned property list information info[0] = alignment Required memory alignment boundary info[1]
- * = block_size File system block size info[2] = cbuf_size Copy buffer size
+ * OUT: Returned property list information
+ * info[0] = increment -how much to grow the memory each time
+ * info[1] = backing_store - write to file name on flush setting
*
* @return a non-negative value if successful; otherwise returns a negative value.
*
@@ -7959,14 +10036,72 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size,
long cbuf_size) throws HDF5LibraryException;
+ /**
+ * H5Pget_fapl_family Returns information about the family file access property list.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param memb_size
+ * OUT: the size in bytes of each file member (used only when creating a new file)
+ * @param memb_fapl_id
+ * OUT: the file access property list to be used for each family member
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_family Sets up use of the direct I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param memb_size
+ * IN: the size in bytes of each file member (used only when creating a new file)
+ * @param memb_fapl_id
+ * IN: the file access property list to be used for each family member
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param fapl_conf
+ * IN: the properties of the hdfs driver
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pget_fapl_hdfs gets the properties hdfs I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the properties of the hdfs driver.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -8044,17 +10179,99 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the
+ * old split driver which stored meta data in one file and raw
+ * data in another file
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param meta_ext
+ * IN: meta filename extension
+ * @param meta_plist_id
+ * IN: File access property list identifier for metadata
+ * @param raw_ext
+ * IN: raw data filename extension
+ * @param raw_plist_id
+ * IN: File access property list identifier raw data
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id,
String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_stdio Sets up use of the stdio I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_windows Sets up use of the windows I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param fapl_conf
+ * IN: the properties of the ros3 driver
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the properties of the ros3 driver.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException;
// /////// unimplemented ////////
@@ -8762,50 +10979,7 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
- /**
- * H5Sclose releases a dataspace.
- *
- * @param space_id
- * Identifier of dataspace to release.
- *
- * @return a non-negative value if successful
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- **/
- public static int H5Sclose(long space_id) throws HDF5LibraryException {
- if (space_id < 0)
- return 0; // throw new HDF5LibraryException("Negative ID");;
-
- log.trace("OPEN_IDS: H5Sclose remove {}", space_id);
- OPEN_IDS.remove(space_id);
- log.trace("OPEN_IDS: {}", OPEN_IDS.size());
- return _H5Sclose(space_id);
- }
-
- private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException;
-
- /**
- * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id.
- *
- * @param space_id
- * Identifier of dataspace to copy.
- * @return a dataspace identifier if successful
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- **/
- public static long H5Scopy(long space_id) throws HDF5LibraryException {
- long id = _H5Scopy(space_id);
- if (id > 0) {
- log.trace("OPEN_IDS: H5Scopy add {}", id);
- OPEN_IDS.add(id);
- log.trace("OPEN_IDS: {}", OPEN_IDS.size());
- }
- return id;
- }
-
- private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException;
+ /**************** Operations on dataspaces ********************/
/**
* H5Screate creates a new dataspace of a particular type.
@@ -8862,19 +11036,96 @@ public class H5 implements java.io.Serializable {
throws HDF5Exception, NullPointerException;
/**
- * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it.
+ * H5Sset_extent_simple sets or resets the size of an existing dataspace.
*
- * @param buf
- * IN: Buffer for the data space object to be decoded.
+ * @param space_id
+ * Dataspace identifier.
+ * @param rank
+ * Rank, or dimensionality, of the dataspace.
+ * @param current_size
+ * Array containing current size of dataspace.
+ * @param maximum_size
+ * Array containing maximum size of dataspace.
*
- * @return a new object handle
+ * @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size,
+ long[] maximum_size) throws HDF5LibraryException, NullPointerException;
+
+ /**
+ * H5Sset_extent_simple sets or resets the size of an existing dataspace.
+ *
+ * @param space_id
+ * Dataspace identifier.
+ * @param rank
+ * Rank, or dimensionality, of the dataspace.
+ * @param current_size
+ * Array containing current size of dataspace.
+ * @param maximum_size
+ * Array containing maximum size of dataspace.
+ *
+ * @return a dataspace identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size,
+ byte[] maximum_size) throws HDF5LibraryException, NullPointerException {
+ ByteBuffer csbb = ByteBuffer.wrap(current_size);
+ long[] lacs = (csbb.asLongBuffer()).array();
+ ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size);
+ long[] lamaxs = (maxsbb.asLongBuffer()).array();
+
+ return H5Sset_extent_simple(space_id, rank, lacs, lamaxs);
+ }
+
+ /**
+ * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id.
+ *
+ * @param space_id
+ * Identifier of dataspace to copy.
+ * @return a dataspace identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public static long H5Scopy(long space_id) throws HDF5LibraryException {
+ long id = _H5Scopy(space_id);
+ if (id > 0) {
+ log.trace("OPEN_IDS: H5Scopy add {}", id);
+ OPEN_IDS.add(id);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+ return id;
+ }
+
+ private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sclose releases a dataspace.
+ *
+ * @param space_id
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public static int H5Sclose(long space_id) throws HDF5LibraryException {
+ if (space_id < 0)
+ return 0; // throw new HDF5LibraryException("Negative ID");;
+
+ log.trace("OPEN_IDS: H5Sclose remove {}", space_id);
+ OPEN_IDS.remove(space_id);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Sclose(space_id);
+ }
+
+ private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException;
/**
* H5Sencode converts a data space description into binary form in a buffer.
@@ -8890,154 +11141,139 @@ public class H5 implements java.io.Serializable {
public synchronized static native byte[] H5Sencode(long obj_id) throws HDF5LibraryException, NullPointerException;
/**
- * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the
- * dataspace.
+ * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it.
*
- * @param dest_space_id
- * IN: The identifier for the dataspace from which the extent is copied.
- * @param source_space_id
- * IN: The identifier for the dataspace to which the extent is copied.
+ * @param buf
+ * IN: Buffer for the data space object to be decoded.
*
- * @return a non-negative value if successful
+ * @return a new object handle
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
**/
- public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id)
- throws HDF5LibraryException;
+ public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
/**
- * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal.
+ * H5Sget_simple_extent_npoints determines the number of elements in a dataspace.
*
- * @param first_space_id
- * IN: The identifier for the first dataspace.
- * @param second_space_id
- * IN: The identifier for the seconddataspace.
+ * @param space_id
+ * ID of the dataspace object to query
+ * @return the number of elements in the dataspace if successful
*
- * @return true if successful, else false
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace.
+ *
+ * @param space_id
+ * IN: Identifier of the dataspace
+ *
+ * @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id)
- throws HDF5LibraryException;
+ public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places
- * them into user-supplied buffers.
- * <P>
- * The start and end buffers must be large enough to hold the dataspace rank number of coordinates.
+ * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims
+ * and maxdims parameters.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param start
- * coordinates of lowest corner of bounding box.
- * @param end
- * coordinates of highest corner of bounding box.
+ * @param space_id
+ * IN: Identifier of the dataspace object to query
+ * @param dims
+ * OUT: Pointer to array to store the size of each dimension.
+ * @param maxdims
+ * OUT: Pointer to array to store the maximum size of each dimension.
*
- * @return a non-negative value if successful,with start and end initialized.
+ * @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
* @exception NullPointerException
- * - start or end is null.
+ * - dims or maxdims is null.
**/
- public synchronized static native int H5Sget_select_bounds(long spaceid, long[] start, long[] end)
+ public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection.
+ * H5Sis_simple determines whether a dataspace is a simple dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
+ * @param space_id
+ * Identifier of the dataspace to query
*
- * @return a non-negative value if successful
+ * @return true if is a simple dataspace
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point
- * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per
- * point.
+ * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param startpoint
- * first point to retrieve
- * @param numpoints
- * number of points to retrieve
- * @param buf
- * returns points startblock to startblock+num-1, each points is <i>rank</i> longs.
+ * @param space_id
+ * Dataspace identifier.
*
- * @return a non-negative value if successful
+ * @return a dataspace class name if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same
- * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows:
- *
- * <pre>
- * &lt;"start" coordinate&gt;, immediately followed by
- * &lt;"opposite" corner coordinate&gt;, followed by
- * the next "start" and "opposite" coordinates,
- * etc.
- * until all of the selected blocks have been listed.
- * </pre>
+ * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param startblock
- * first block to retrieve
- * @param numblocks
- * number of blocks to retrieve
- * @param buf
- * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs.
+ * @param space_id
+ * The identifier for the dataspace from which the extent is to be removed.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
+ * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the
+ * dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
+ * @param dest_space_id
+ * IN: The identifier for the dataspace from which the extent is copied.
+ * @param source_space_id
+ * IN: The identifier for the dataspace to which the extent is copied.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException;
+ public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id)
+ throws HDF5LibraryException;
/**
- * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace.
+ * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal.
*
- * @param space_id
- * IN: Identifier of the dataspace object to query
+ * @param first_space_id
+ * IN: The identifier for the first dataspace.
+ * @param second_space_id
+ * IN: The identifier for the seconddataspace.
*
- * @return the number of elements in the selection if successful
+ * @return true if successful, else false
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id)
+ throws HDF5LibraryException;
+
+ /***************** Operations on dataspace selections *****************/
/**
* H5Sget_select_type retrieves the type of selection currently defined for the dataspace space_id.
@@ -9053,76 +11289,118 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Sget_select_type(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims
- * and maxdims parameters.
+ * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace.
*
* @param space_id
* IN: Identifier of the dataspace object to query
- * @param dims
- * OUT: Pointer to array to store the size of each dimension.
- * @param maxdims
- * OUT: Pointer to array to store the maximum size of each dimension.
*
- * @return the number of dimensions in the dataspace if successful
+ * @return the number of elements in the selection if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - dims or maxdims is null.
**/
- public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace.
+ * H5Sselect_copy copies all the selection information (including offset) from the source
+ * dataspace to the destination dataspace.
+ * @param dst_id ID of the destination dataspace
+ * @param src_id ID of the source dataspace
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Sselect_copy(long dst_id, long src_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sselect_valid verifies that the selection for the dataspace.
*
* @param space_id
- * IN: Identifier of the dataspace
+ * The identifier for the dataspace in which the selection is being reset.
*
- * @return the number of dimensions in the dataspace if successful
+ * @return true if the selection is contained within the extent and FALSE if it is not or is an error.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_npoints determines the number of elements in a dataspace.
+ * H5Sselect_adjust moves a selection by subtracting an offset from it.
*
* @param space_id
- * ID of the dataspace object to query
- * @return the number of elements in the dataspace if successful
+ * ID of dataspace to adjust
+ * @param offset
+ * Offset to subtract
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset is null.
**/
- public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException;
+ public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace.
+ * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places
+ * them into user-supplied buffers.
+ * <P>
+ * The start and end buffers must be large enough to hold the dataspace rank number of coordinates.
*
* @param space_id
- * Dataspace identifier.
+ * Identifier of dataspace to release.
+ * @param start
+ * coordinates of lowest corner of bounding box.
+ * @param end
+ * coordinates of highest corner of bounding box.
*
- * @return a dataspace class name if successful
+ * @return a non-negative value if successful,with start and end initialized.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - start or end is null.
**/
- public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_select_bounds(long space_id, long[] start, long[] end)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sis_simple determines whether a dataspace is a simple dataspace.
+ * H5Sselect_shape_same checks to see if the current selection in the dataspaces are the same
+ * dimensionality and shape.
+ * This is primarily used for reading the entire selection in one swoop.
+ *
+ * @param space1_id ID of 1st Dataspace pointer to compare
+ * @param space2_id ID of 2nd Dataspace pointer to compare
+ *
+ * @return true if the selection is the same dimensionality and shape;
+ * false otherwise
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sselect_intersect_block checks to see if the current selection in the
+ * dataspace intersects with the block given.
*
* @param space_id
- * Identifier of the dataspace to query
+ * ID of dataspace pointer to compare
+ * @param start
+ * Starting coordinate of block
+ * @param end
+ * Opposite ("ending") coordinate of block
*
- * @return true if is a simple dataspace
+ * @return a TRUE if the current selection in the dataspace intersects with the block given
+ * FALSE otherwise
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset is null.
**/
- public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start, long[] end)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Soffset_simple sets the offset of a simple dataspace space_id.
@@ -9142,6 +11420,21 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Soffset_simple sets the offset of a simple dataspace space_id.
+ *
+ * @param space_id
+ * IN: The identifier for the dataspace object to reset.
+ * @param offset
+ * IN: The offset at which to position the selection.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset array is null.
+ **/
public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception,
NullPointerException {
if (offset == null) {
@@ -9172,6 +11465,18 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Sselect_all(long space_id) throws HDF5LibraryException;
/**
+ * H5Sselect_none resets the selection region for the dataspace space_id to include no elements.
+ *
+ * @param space_id
+ * IN: The identifier of the dataspace to be reset.
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException;
+
+ /**
* H5Sselect_elements selects array elements to be included in the selection for the space_id dataspace.
*
* @param space_id
@@ -9229,6 +11534,43 @@ public class H5 implements java.io.Serializable {
}
/**
+ * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException;
+
+ /**
+ * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point
+ * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per
+ * point.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ * @param startpoint
+ * first point to retrieve
+ * @param numpoints
+ * number of points to retrieve
+ * @param buf
+ * returns points startblock to startblock+num-1, each points is <i>rank</i> longs.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
+ **/
+ public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints,
+ long[] buf) throws HDF5LibraryException, NullPointerException;
+
+ /**
* H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
* by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
*
@@ -9268,76 +11610,118 @@ public class H5 implements java.io.Serializable {
return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock);
}
- public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride,
- long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
-
/**
- * H5Sselect_none resets the selection region for the dataspace space_id to include no elements.
+ * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
+ * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
*
* @param space_id
- * IN: The identifier of the dataspace to be reset.
+ * IN: Identifier of dataspace selection to modify
+ * @param op
+ * IN: Operation to perform on current selection.
+ * @param start
+ * IN: Offset of start of hyperslab
+ * @param stride
+ * IN: Hyperslab stride.
+ * @param count
+ * IN: Number of blocks included in hyperslab.
+ * @param block
+ * IN: Size of block in hyperslab.
+ *
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - an input array is null.
+ * @exception IllegalArgumentException
+ * - an input array is invalid.
**/
- public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride,
+ long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
/**
- * H5Sselect_valid verifies that the selection for the dataspace.
+ * H5Scombine_hyperslab combines a hyperslab selection with the current selection for a dataspace,
+ * creating a new dataspace to return the generated selection.
+ * If the current selection is not a hyperslab, it is freed and the hyperslab
+ * parameters passed in are combined with the H5S_SEL_ALL hyperslab (ie. a
+ * selection composing the entire current extent). If STRIDE or BLOCK is
+ * NULL, they are assumed to be set to all '1'.
*
* @param space_id
- * The identifier for the dataspace in which the selection is being reset.
+ * IN: Dataspace ID of selection to use
+ * @param op
+ * IN: Operation to perform on current selection.
+ * @param start
+ * IN: Offset of start of hyperslab
+ * @param stride
+ * IN: Hyperslab stride.
+ * @param count
+ * IN: Number of blocks included in hyperslab.
+ * @param block
+ * IN: Size of block in hyperslab.
*
- * @return true if the selection is contained within the extent and FALSE if it is not or is an error.
+ * @return a dataspace ID on success / H5I_INVALID_HID on failure
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - an input array is null.
+ * @exception IllegalArgumentException
+ * - an input array is invalid.
**/
- public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException;
+ public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start, long[] stride,
+ long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
/**
- * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE.
+ * H5Smodify_select refine an existing hyperslab selection with an operation, using a second
+ * hyperslab. The first selection is modified to contain the result of
+ * space1 operated on by space2.
*
- * @param space_id
- * The identifier for the dataspace from which the extent is to be removed.
+ * @param space1_id
+ * ID of the destination dataspace
+ * @param op
+ * Operation to perform on current selection.
+ * @param space2_id
+ * ID of the source dataspace
*
- * @return a non-negative value if successful
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
+
+ /**
+ * H5Scombine_select combines two existing hyperslab selections with an operation, returning
+ * a new dataspace with the resulting selection. The dataspace extent from
+ * space1 is copied for the dataspace extent of the newly created dataspace.
+ *
+ * @param space1_id
+ * ID of the first dataspace
+ * @param op
+ * Operation to perform on current selection.
+ * @param space2_id
+ * ID of the second dataspace
+ *
+ * @return a dataspace ID on success / H5I_INVALID_HID on failure
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException;
+ public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
/**
- * H5Sset_extent_simple sets or resets the size of an existing dataspace.
+ * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified
+ * by space_id.
*
* @param space_id
- * Dataspace identifier.
- * @param rank
- * Rank, or dimensionality, of the dataspace.
- * @param current_size
- * Array containing current size of dataspace.
- * @param maximum_size
- * Array containing maximum size of dataspace.
+ * IN: Identifier of dataspace selection to query
*
- * @return a dataspace identifier if successful
+ * @return a TRUE/FALSE for hyperslab selection if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size,
- long[] maximum_size) throws HDF5LibraryException, NullPointerException;
-
- public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size,
- byte[] maximum_size) throws HDF5LibraryException, NullPointerException {
- ByteBuffer csbb = ByteBuffer.wrap(current_size);
- long[] lacs = (csbb.asLongBuffer()).array();
- ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size);
- long[] lamaxs = (maxsbb.asLongBuffer()).array();
-
- return H5Sset_extent_simple(space_id, rank, lacs, lamaxs);
- }
+ public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
/**
* H5Sget_regular_hyperslab determines if a hyperslab selection is regular for the dataspace specified
@@ -9363,33 +11747,82 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ /**
+ * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException;
+
/**
- * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified
- * by space_id.
+ * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same
+ * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows:
*
- * @param space_id
- * IN: Identifier of dataspace selection to query
+ * <pre>
+ * &lt;"start" coordinate&gt;, immediately followed by
+ * &lt;"opposite" corner coordinate&gt;, followed by
+ * the next "start" and "opposite" coordinates,
+ * etc.
+ * until all of the selected blocks have been listed.
+ * </pre>
*
- * @return a TRUE/FALSE for hyperslab selection if successful
+ * @param spaceid
+ * Identifier of dataspace to release.
+ * @param startblock
+ * first block to retrieve
+ * @param numblocks
+ * number of blocks to retrieve
+ * @param buf
+ * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs.
+ *
+ * @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
**/
- public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks,
+ long[] buf) throws HDF5LibraryException, NullPointerException;
+
+ /**
+ * H5Sselect_project_intersection projects the intersection of the selections of src_space_id and
+ * src_intersect_space_id within the selection of src_space_id as a
+ * selection within the selection of dst_space_id.
+ *
+ * @param src_space_id
+ * Selection that is mapped to dst_space_id, and intersected with src_intersect_space_id
+ * @param dst_space_id
+ * Selection that is mapped to src_space_id
+ * @param src_intersect_space_id
+ * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the result
+ *
+ * @return a dataspace with a selection equal to the intersection of
+ * src_intersect_space_id and src_space_id projected from src_space to dst_space on success
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sselect_project_intersection(long src_space_id, long dst_space_id,
+ long src_intersect_space_id) throws HDF5LibraryException;
- // /////// unimplemented ////////
- // #ifdef NEW_HYPERSLAB_API
- // hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op,
- // const hsize_t start[],
- // const hsize_t _stride[],
- // const hsize_t count[],
- // const hsize_t _block[]);
- // herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op,
- // hid_t space2_id);
- // hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op,
- // hid_t space2_id);
- // #endif /* NEW_HYPERSLAB_API */
- // herr_t H5Sselect_copy(hid_t dst_id, hid_t src_id);
+
+ // /////// unimplemented ////////
+ ///// Operations on dataspace selections /////
+
+ //
+ ///// Operations on dataspace selection iterators /////
+ //public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags);
+ //public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq,
+ // size_t *nbytes, hsize_t *off, size_t *len);
+ //public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id);
+ //public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id);
@@ -9737,6 +12170,23 @@ public class H5 implements java.io.Serializable {
return H5Tenum_insert_int(type, name, value);
}
+ /**
+ * H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype.
+ *
+ * @param type
+ * IN: Identifier of datatype.
+ * @param name
+ * IN: The name of the member
+ * @param value
+ * IN: The value of the member, data of the correct type
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException,
NullPointerException {
int[] val = { value };
@@ -10893,15 +13343,128 @@ public class H5 implements java.io.Serializable {
// ////////////////////////////////////////////////////////////
/// VOL Connector Functionality
+ /**
+ * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class.
+ *
+ * @param connector_name
+ * IN: name of the connector.
+ * @param vipl_id
+ * IN: VOL initialization property list which must be
+ * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT).
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id);
+ /**
+ * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ * @param vipl_id
+ * IN: VOL initialization property list which must be
+ * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT).
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id);
+ /**
+ * H5VLis_connector_registered_by_name tests whether a VOL class has been registered.
+ *
+ * @param name
+ * IN: name of the connector.
+ *
+ * @return true if a VOL connector with that name has been registered
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5VLis_connector_registered_by_name(String name);
+ /**
+ * H5VLis_connector_registered_by_value tests whether a VOL class has been registered.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ *
+ * @return true if a VOL connector with that value has been registered
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value);
+ /**
+ * H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object.
+ *
+ * @param object_id
+ * IN: Identifier of the object.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id(long object_id);
+ /**
+ * H5VLget_connector_id_by_name retrieves the ID for a registered VOL connector.
+ *
+ * @param name
+ * IN: name of the connector.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id_by_name(String name);
+ /**
+ * H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id_by_value(int connector_value);
+ /**
+ * H5VLget_connector_name returns the connector name for the VOL associated with the
+ * object or file ID.
+ *
+ * @param object_id
+ * IN: Identifier of the object.
+ *
+ * @return the connector name
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native String H5VLget_connector_name(long object_id);
+ /**
+ * H5VLclose closes a VOL connector ID.
+ *
+ * @param connector_id
+ * IN: Identifier of the connector.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5VLclose(long connector_id);
+ /**
+ * H5VLunregister_connector removes a VOL connector ID from the library.
+ *
+ * @param connector_id
+ * IN: Identifier of the connector.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5VLunregister_connector(long connector_id);
// /////// unimplemented ////////
@@ -10914,11 +13477,44 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
- public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Zfilter_avail checks if a filter is available.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return a non-negative(TRUE/FALSE) value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException;
+ /**
+ * H5Zget_filter_info gets information about a pipeline data filter.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return the filter information flags
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException;
- public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Zunregister unregisters a filter.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException;
// /////// unimplemented ////////
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index b390183..2241238 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -35,12 +35,17 @@ public class HDF5Constants {
// Get the HDF5 constants from the library //
// /////////////////////////////////////////////////////////////////////////
- public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
+ //public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_MAX_PIXELS_PER_BLOCK = H5_SZIP_MAX_PIXELS_PER_BLOCK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_NN_OPTION_MASK = H5_SZIP_NN_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_EC_OPTION_MASK = H5_SZIP_EC_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_ALLOW_K13_OPTION_MASK = H5_SZIP_ALLOW_K13_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_CHIP_OPTION_MASK = H5_SZIP_CHIP_OPTION_MASK();
public static final int H5_INDEX_UNKNOWN = H5_INDEX_UNKNOWN();
public static final int H5_INDEX_NAME = H5_INDEX_NAME();
@@ -92,110 +97,359 @@ public class HDF5Constants {
public static final int H5D_VDS_LAST_AVAILABLE = H5D_VDS_LAST_AVAILABLE();
public static final int H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS = H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS();
+ /** Different kinds of error information - H5E_type_t */
public static final int H5E_MAJOR = H5E_MAJOR();
+ /** Different kinds of error information - H5E_type_t */
public static final int H5E_MINOR = H5E_MINOR();
+ /** Minor error codes - Object header related errors - Alignment error */
public static final long H5E_ALIGNMENT = H5E_ALIGNMENT();
+ /** Minor error codes - Resource errors - Object already exists */
public static final long H5E_ALREADYEXISTS = H5E_ALREADYEXISTS();
+ /** Minor error codes - Function entry/exit interface - Object already initialized */
public static final long H5E_ALREADYINIT = H5E_ALREADYINIT();
+ /** Major error codes - Invalid arguments to routine */
public static final long H5E_ARGS = H5E_ARGS();
+ /** Major error codes - Object atom */
public static final long H5E_ATOM = H5E_ATOM();
+ /** Major error codes - Attribute */
public static final long H5E_ATTR = H5E_ATTR();
+ /** Minor error codes - Object atom related errors - Unable to find atom information (already closed?) */
public static final long H5E_BADATOM = H5E_BADATOM();
+ /** Minor error codes - File accessibility errors - Bad file ID accessed */
public static final long H5E_BADFILE = H5E_BADFILE();
+ /** Minor error codes - Object atom related errors - Unable to find ID group information */
public static final long H5E_BADGROUP = H5E_BADGROUP();
+ /** Minor error codes - Object header related errors - Iteration failed */
+ public static final long H5E_BADITER = H5E_BADITER();
+ /** Minor error codes - Object header related errors - Unrecognized message */
public static final long H5E_BADMESG = H5E_BADMESG();
+ /** Minor error codes - Argument errors - Out of range */
public static final long H5E_BADRANGE = H5E_BADRANGE();
+ /** Minor error codes - Dataspace errors - Invalid selection */
public static final long H5E_BADSELECT = H5E_BADSELECT();
+ /** Datatype conversion errors - Bad size for object */
public static final long H5E_BADSIZE = H5E_BADSIZE();
+ /** Minor error codes - Argument errors - Inappropriate type */
public static final long H5E_BADTYPE = H5E_BADTYPE();
+ /** Minor error codes - Argument errors - Bad value */
public static final long H5E_BADVALUE = H5E_BADVALUE();
+ /** Major error codes - B-Tree node */
public static final long H5E_BTREE = H5E_BTREE();
+ /** Major error codes - Object cache */
public static final long H5E_CACHE = H5E_CACHE();
+ /** I/O pipeline errors - Callback failed */
public static final long H5E_CALLBACK = H5E_CALLBACK();
+ /** I/O pipeline errors - Error from filter 'can apply' callback */
public static final long H5E_CANAPPLY = H5E_CANAPPLY();
- // public static final long H5E_CANTALLOC = H5E_CANTALLOC();
+ /** Minor error codes - Resource errors - Can't allocate space */
+ public static final long H5E_CANTALLOC = H5E_CANTALLOC();
+ /** Minor error codes - Dataspace errors - Can't append object */
+ public static final long H5E_CANTAPPEND = H5E_CANTAPPEND();
+ /** Minor error codes - Heap errors - Can't attach object */
+ public static final long H5E_CANTATTACH = H5E_CANTATTACH();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as clean */
+ public static final long H5E_CANTCLEAN = H5E_CANTCLEAN();
+ /** Minor error codes - Dataspace errors - Can't clip hyperslab region */
public static final long H5E_CANTCLIP = H5E_CANTCLIP();
+ /** Minor error codes - File accessibility errors - Unable to close file */
public static final long H5E_CANTCLOSEFILE = H5E_CANTCLOSEFILE();
+ /** Minor error codes - Group related errors - Can't close object */
+ public static final long H5E_CANTCLOSEOBJ = H5E_CANTCLOSEOBJ();
+ /** Minor error codes - Dataspace errors - Can't compare objects */
+ public static final long H5E_CANTCOMPARE = H5E_CANTCOMPARE();
+ /** Minor error codes - Heap errors - Can't compute value */
+ public static final long H5E_CANTCOMPUTE = H5E_CANTCOMPUTE();
+ /** Datatype conversion errors - Can't convert datatypes */
public static final long H5E_CANTCONVERT = H5E_CANTCONVERT();
+ /** Minor error codes - Resource errors - Unable to copy object */
public static final long H5E_CANTCOPY = H5E_CANTCOPY();
+ /** Minor error codes - Cache related errors - Unable to cork an object */
+ public static final long H5E_CANTCORK = H5E_CANTCORK();
+ /** Minor error codes - Dataspace errors - Can't count elements */
public static final long H5E_CANTCOUNT = H5E_CANTCOUNT();
+ /** Minor error codes - File accessibility errors - Unable to create file */
public static final long H5E_CANTCREATE = H5E_CANTCREATE();
+ /** Minor error codes - Object atom related errors - Unable to decrement reference count */
public static final long H5E_CANTDEC = H5E_CANTDEC();
+ /** Minor error codes - B-tree related errors - Unable to decode value */
public static final long H5E_CANTDECODE = H5E_CANTDECODE();
+ /** Minor error codes - Object header related errors - Can't delete message */
public static final long H5E_CANTDELETE = H5E_CANTDELETE();
+ /** Minor error codes - File accessibility errors - Unable to delete file */
public static final long H5E_CANTDELETEFILE = H5E_CANTDELETEFILE();
+ /** Minor error codes - Cache related errors - Unable to create a flush dependency */
+ public static final long H5E_CANTDEPEND = H5E_CANTDEPEND();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as dirty */
+ public static final long H5E_CANTDIRTY = H5E_CANTDIRTY();
+ /** Minor error codes - B-tree related errors - Unable to encode value */
public static final long H5E_CANTENCODE = H5E_CANTENCODE();
+ /** Minor error codes - Cache related errors - Unable to expunge a metadata cache entry */
+ public static final long H5E_CANTEXPUNGE = H5E_CANTEXPUNGE();
+ /** Minor error codes - Heap errors - Can't extend heap's space */
+ public static final long H5E_CANTEXTEND = H5E_CANTEXTEND();
+ /** I/O pipeline errors - Filter operation failed */
+ public static final long H5E_CANTFILTER = H5E_CANTFILTER();
+ /** Minor error codes - Cache related errors - Unable to flush data from cache */
public static final long H5E_CANTFLUSH = H5E_CANTFLUSH();
+ /** Minor error codes - Resource errors - Unable to free object */
public static final long H5E_CANTFREE = H5E_CANTFREE();
+ /** Minor error codes - Parallel MPI - Can't gather data */
+ public static final long H5E_CANTGATHER = H5E_CANTGATHER();
+ /** Minor error codes - Resource errors - Unable to garbage collect */
+ public static final long H5E_CANTGC = H5E_CANTGC();
+ /** Minor error codes - Property list errors - Can't get value */
public static final long H5E_CANTGET = H5E_CANTGET();
+ /** Minor error codes - Resource errors - Unable to compute size */
+ public static final long H5E_CANTGETSIZE = H5E_CANTGETSIZE();
+ /** Minor error codes - Object atom related errors - Unable to increment reference count */
public static final long H5E_CANTINC = H5E_CANTINC();
+ /** Minor error codes - Function entry/exit interface - Unable to initialize object */
public static final long H5E_CANTINIT = H5E_CANTINIT();
+ /** Minor error codes - Cache related errors - Unable to insert metadata into cache */
+ public static final long H5E_CANTINS = H5E_CANTINS();
+ /** Minor error codes - B-tree related errors - Unable to insert object */
public static final long H5E_CANTINSERT = H5E_CANTINSERT();
+ /** Minor error codes - B-tree related errors - Unable to list node */
public static final long H5E_CANTLIST = H5E_CANTLIST();
+ /** Minor error codes - Cache related errors - Unable to load metadata into cache */
public static final long H5E_CANTLOAD = H5E_CANTLOAD();
+ /** Minor error codes - Resource errors - Unable to lock object */
public static final long H5E_CANTLOCK = H5E_CANTLOCK();
+// /** Minor error codes - File accessibility errors Unable to lock file */
+// public static final long H5E_CANTLOCKFILE = H5E_CANTLOCKFILE();
+ /** Minor error codes - Cache related errors - Unable to mark a pinned entry as clean */
+ public static final long H5E_CANTMARKCLEAN = H5E_CANTMARKCLEAN();
+ /** Minor error codes - Cache related errors - Unable to mark a pinned entry as dirty */
+ public static final long H5E_CANTMARKDIRTY = H5E_CANTMARKDIRTY();
+ /** Minor error codes - Cache related errors - Unable to mark an entry as unserialized */
+ public static final long H5E_CANTMARKSERIALIZED = H5E_CANTMARKSERIALIZED();
+ /** Minor error codes - Cache related errors - Unable to mark an entry as serialized */
+ public static final long H5E_CANTMARKUNSERIALIZED = H5E_CANTMARKUNSERIALIZED();
+ /** Minor error codes - Free space errors - Can't merge objects */
+ public static final long H5E_CANTMERGE = H5E_CANTMERGE();
+ /** Minor error codes - B-tree related errors - Unable to modify record */
+ public static final long H5E_CANTMODIFY = H5E_CANTMODIFY();
+ /** Minor error codes - Link related errors - Can't move object */
+ public static final long H5E_CANTMOVE = H5E_CANTMOVE();
+ /** Minor error codes - Dataspace errors - Can't move to next iterator location */
public static final long H5E_CANTNEXT = H5E_CANTNEXT();
+ /** Minor error codes - Cache related errors - Unable to notify object about action */
+ public static final long H5E_CANTNOTIFY = H5E_CANTNOTIFY();
+ /** Minor error codes - File accessibility errors - Unable to open file */
public static final long H5E_CANTOPENFILE = H5E_CANTOPENFILE();
+ /** Minor error codes - Group related errors - Can't open object */
public static final long H5E_CANTOPENOBJ = H5E_CANTOPENOBJ();
- // public static final long H5E_CANTRECV = H5E_CANTRECV();
+ /** Minor error codes - Heap errors - Can't operate on object */
+ public static final long H5E_CANTOPERATE = H5E_CANTOPERATE();
+ /** Minor error codes - Object header related errors - Can't pack messages */
+ public static final long H5E_CANTPACK = H5E_CANTPACK();
+ /** Minor error codes - Cache related errors - Unable to pin cache entry */
+ public static final long H5E_CANTPIN = H5E_CANTPIN();
+ /** Minor error codes - Cache related errors - Unable to protect metadata */
+ public static final long H5E_CANTPROTECT = H5E_CANTPROTECT();
+ /** Minor error codes - Parallel MPI - Can't receive data */
+ public static final long H5E_CANTRECV = H5E_CANTRECV();
+ /** Minor error codes - B-tree related errors - Unable to redistribute records */
+ public static final long H5E_CANTREDISTRIBUTE = H5E_CANTREDISTRIBUTE();
+ /** Minor error codes - Object atom related errors - Unable to register new atom */
public static final long H5E_CANTREGISTER = H5E_CANTREGISTER();
+ /** Minor error codes - Function entry/exit interface - Unable to release object */
public static final long H5E_CANTRELEASE = H5E_CANTRELEASE();
+ /** Minor error codes - B-tree related errors - Unable to remove object */
+ public static final long H5E_CANTREMOVE = H5E_CANTREMOVE();
+ /** Minor error codes - Object header related errors - Unable to rename object */
+ public static final long H5E_CANTRENAME = H5E_CANTRENAME();
+ /** Minor error codes - Object header related errors - Can't reset object */
+ public static final long H5E_CANTRESET = H5E_CANTRESET();
+ /** Minor error codes - Cache related errors - Unable to resize a metadata cache entry */
+ public static final long H5E_CANTRESIZE = H5E_CANTRESIZE();
+ /** Minor error codes - Heap errors - Can't restore condition */
+ public static final long H5E_CANTRESTORE = H5E_CANTRESTORE();
+ /** Minor error codes - Free space errors - Can't revive object */
+ public static final long H5E_CANTREVIVE = H5E_CANTREVIVE();
+ /** Minor error codes - Free space errors - Can't shrink container */
+ public static final long H5E_CANTSHRINK = H5E_CANTSHRINK();
+ /** Minor error codes - Dataspace errors - Can't select hyperslab */
public static final long H5E_CANTSELECT = H5E_CANTSELECT();
+ /** Minor error codes - Cache related errors - Unable to serialize data from cache */
+ public static final long H5E_CANTSERIALIZE = H5E_CANTSERIALIZE();
+ /** Minor error codes - Property list errors - Can't set value */
public static final long H5E_CANTSET = H5E_CANTSET();
+ /** Minor error codes - Link related errors - Can't sort objects */
+ public static final long H5E_CANTSORT = H5E_CANTSORT();
+ /** Minor error codes - B-tree related errors - Unable to split node */
public static final long H5E_CANTSPLIT = H5E_CANTSPLIT();
+ /** Minor error codes - B-tree related errors - Unable to swap records */
+ public static final long H5E_CANTSWAP = H5E_CANTSWAP();
+ /** Minor error codes - Cache related errors - Unable to tag metadata in the cache */
+ public static final long H5E_CANTTAG = H5E_CANTTAG();
+ /** Minor error codes - Cache related errors - Unable to uncork an object */
+ public static final long H5E_CANTUNCORK = H5E_CANTUNCORK();
+ /** Minor error codes - Cache related errors - Unable to destroy a flush dependency */
+ public static final long H5E_CANTUNDEPEND = H5E_CANTUNDEPEND();
+ /** Minor error codes - Resource errors - Unable to unlock object */
public static final long H5E_CANTUNLOCK = H5E_CANTUNLOCK();
+// /** Minor error codes - File accessibility errors Unable to unlock file */
+// public static final long H5E_CANTUNLOCKFILE = H5E_CANTUNLOCKFILE();
+ /** Minor error codes - Cache related errors - Unable to un-pin cache entry */
+ public static final long H5E_CANTUNPIN = H5E_CANTUNPIN();
+ /** Minor error codes - Cache related errors - Unable to unprotect metadata */
+ public static final long H5E_CANTUNPROTECT = H5E_CANTUNPROTECT();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as unserialized */
+ public static final long H5E_CANTUNSERIALIZE = H5E_CANTUNSERIALIZE();
+ /** Minor error codes - Heap errors - Can't update object */
+ public static final long H5E_CANTUPDATE = H5E_CANTUPDATE();
+ /** Generic low-level file I/O errors - Close failed */
public static final long H5E_CLOSEERROR = H5E_CLOSEERROR();
+ /** Minor error codes - Group related errors - Name component is too long */
public static final long H5E_COMPLEN = H5E_COMPLEN();
+ /** Major error codes - API Context */
+ public static final long H5E_CONTEXT = H5E_CONTEXT();
+ /** Major error codes - Dataset */
public static final long H5E_DATASET = H5E_DATASET();
+ /** Major error codes - Dataspace */
public static final long H5E_DATASPACE = H5E_DATASPACE();
+ /** Major error codes - Datatype */
public static final long H5E_DATATYPE = H5E_DATATYPE();
+ /** Value for the default error stack */
public static final long H5E_DEFAULT = H5E_DEFAULT();
+ /** Minor error codes - Property list errors - Duplicate class name in parent class */
public static final long H5E_DUPCLASS = H5E_DUPCLASS();
+ /** Major error codes - Extensible Array */
+ public static final long H5E_EARRAY = H5E_EARRAY();
+ /** Major error codes - External file list */
public static final long H5E_EFL = H5E_EFL();
+ /** Major error codes - Error API */
+ public static final long H5E_ERROR = H5E_ERROR();
+ /** Minor error codes - B-tree related errors - Object already exists */
public static final long H5E_EXISTS = H5E_EXISTS();
+ /** Major error codes - Fixed Array */
+ public static final long H5E_FARRAY = H5E_FARRAY();
+ /** Generic low-level file I/O errors - File control (fcntl) failed */
public static final long H5E_FCNTL = H5E_FCNTL();
+ /** Major error codes - File accessibility */
public static final long H5E_FILE = H5E_FILE();
+ /** Minor error codes - File accessibility errors - File already exists */
public static final long H5E_FILEEXISTS = H5E_FILEEXISTS();
+ /** Minor error codes - File accessibility errors - File already open */
public static final long H5E_FILEOPEN = H5E_FILEOPEN();
+ /** Major error codes - Free Space Manager */
+ public static final long H5E_FSPACE = H5E_FSPACE();
+ /** Major error codes - Function entry/exit */
public static final long H5E_FUNC = H5E_FUNC();
+ /** Major error codes - Heap */
public static final long H5E_HEAP = H5E_HEAP();
+ /** Minor error codes - Dataspace errors - Internal states are inconsistent */
+ public static final long H5E_INCONSISTENTSTATE = H5E_INCONSISTENTSTATE();
+ /** Major error codes - Internal error (too specific to document in detail) */
public static final long H5E_INTERNAL = H5E_INTERNAL();
+ /** Major error codes - Low-level I/O */
public static final long H5E_IO = H5E_IO();
+ /** Major error codes - Links */
public static final long H5E_LINK = H5E_LINK();
+ /** Minor error codes - Object header related errors - Bad object header link count */
public static final long H5E_LINKCOUNT = H5E_LINKCOUNT();
+ /** Minor error codes - Cache related errors - Failure in the cache logging framework */
+ public static final long H5E_LOGGING = H5E_LOGGING();
+ /** Major error codes - Map */
+ public static final long H5E_MAP = H5E_MAP();
+ /** Minor error codes - File accessibility errors - File mount error */
public static final long H5E_MOUNT = H5E_MOUNT();
+ /** Minor error codes - Parallel MPI - Some MPI function failed */
public static final long H5E_MPI = H5E_MPI();
+ /** Minor error codes - Parallel MPI - MPI Error String */
public static final long H5E_MPIERRSTR = H5E_MPIERRSTR();
+ /** Minor error codes - Link related errors - Too many soft links in path */
+ public static final long H5E_NLINKS = H5E_NLINKS();
+ /** Minor error codes - Parallel MPI - Can't perform independent IO */
+ public static final long H5E_NO_INDEPENDENT = H5E_NO_INDEPENDENT();
+ /** I/O pipeline errors - Filter present but encoding disabled */
+ public static final long H5E_NOENCODER = H5E_NOENCODER();
+ /** I/O pipeline errors - Requested filter is not available */
public static final long H5E_NOFILTER = H5E_NOFILTER();
+ /** Minor error codes - Object atom related errors - Out of IDs for group */
public static final long H5E_NOIDS = H5E_NOIDS();
+ /** Major error codes - No error */
public static final long H5E_NONE_MAJOR = H5E_NONE_MAJOR();
+ /** No error */
public static final long H5E_NONE_MINOR = H5E_NONE_MINOR();
+ /** Minor error codes - Resource errors - No space available for allocation */
public static final long H5E_NOSPACE = H5E_NOSPACE();
+ /** Minor error codes - Cache related errors - Metadata not currently cached */
public static final long H5E_NOTCACHED = H5E_NOTCACHED();
+ /** Minor error codes - B-tree related errors - Object not found */
public static final long H5E_NOTFOUND = H5E_NOTFOUND();
+ /** Minor error codes - File accessibility errors - Not an HDF5 file */
public static final long H5E_NOTHDF5 = H5E_NOTHDF5();
+ /** Minor error codes - Link related errors - Link class not registered */
+ public static final long H5E_NOTREGISTERED = H5E_NOTREGISTERED();
+ /** Minor error codes - Resource errors - Object is already open */
+ public static final long H5E_OBJOPEN = H5E_OBJOPEN();
+ /** Major error codes - Object header */
public static final long H5E_OHDR = H5E_OHDR();
+ /** Minor error codes - Plugin errors - Can't open directory or file */
+ public static final long H5E_OPENERROR = H5E_OPENERROR();
+ /** Generic low-level file I/O errors - Address overflowed */
public static final long H5E_OVERFLOW = H5E_OVERFLOW();
+ /** Major error codes - Page Buffering */
+ public static final long H5E_PAGEBUF = H5E_PAGEBUF();
+ /** Minor error codes - Group related errors - Problem with path to object */
+ public static final long H5E_PATH = H5E_PATH();
+ /** Major error codes - Data filters */
public static final long H5E_PLINE = H5E_PLINE();
+ /** Major error codes - Property lists */
public static final long H5E_PLIST = H5E_PLIST();
+ /** Major error codes - Plugin for dynamically loaded library */
+ public static final long H5E_PLUGIN = H5E_PLUGIN();
+ /** Minor error codes - Cache related errors - Protected metadata error */
public static final long H5E_PROTECT = H5E_PROTECT();
+ /** Generic low-level file I/O errors - Read failed */
public static final long H5E_READERROR = H5E_READERROR();
+ /** Major error codes - References */
public static final long H5E_REFERENCE = H5E_REFERENCE();
+ /** Major error codes - Resource unavailable */
public static final long H5E_RESOURCE = H5E_RESOURCE();
+ /** Major error codes - Reference Counted Strings */
public static final long H5E_RS = H5E_RS();
+ /** Generic low-level file I/O errors - Seek failed */
public static final long H5E_SEEKERROR = H5E_SEEKERROR();
+ /** Minor error codes - Property list errors - Disallowed operation */
+ public static final long H5E_SETDISALLOWED = H5E_SETDISALLOWED();
+ /** I/O pipeline errors - Error from filter 'set local' callback */
public static final long H5E_SETLOCAL = H5E_SETLOCAL();
+ /** Major error codes - Skip Lists */
+ public static final long H5E_SLIST = H5E_SLIST();
+ /** Major error codes - Shared Object Header Messages */
+ public static final long H5E_SOHM = H5E_SOHM();
+ /** Major error codes - Data storage */
public static final long H5E_STORAGE = H5E_STORAGE();
+ /** Major error codes - Symbol table */
public static final long H5E_SYM = H5E_SYM();
+ /** Minor error codes - System level errors - System error message */
+ public static final long H5E_SYSERRSTR = H5E_SYSERRSTR();
+ /** Minor error codes - Cache related errors - Internal error detected */
+ public static final long H5E_SYSTEM = H5E_SYSTEM();
+ /** Minor error codes - Link related errors - Link traversal failure */
+ public static final long H5E_TRAVERSE = H5E_TRAVERSE();
+ /** Minor error codes - File accessibility errors - File has been truncated */
public static final long H5E_TRUNCATED = H5E_TRUNCATED();
+ /** Major error codes - Ternary Search Trees */
public static final long H5E_TST = H5E_TST();
+ /** Minor error codes - Argument errors - Information is uinitialized */
public static final long H5E_UNINITIALIZED = H5E_UNINITIALIZED();
+ /** Minor error codes - Argument errors - Feature is unsupported */
public static final long H5E_UNSUPPORTED = H5E_UNSUPPORTED();
+ /** Minor error codes - Object header related errors - Wrong version number */
public static final long H5E_VERSION = H5E_VERSION();
+ /** Major error codes - Virtual File Layer */
public static final long H5E_VFL = H5E_VFL();
+ /** Major error codes - Virtual Object Layer */
public static final long H5E_VOL = H5E_VOL();
+ /** Error stack traversal direction - begin at API function, end deep */
public static final long H5E_WALK_DOWNWARD = H5E_WALK_DOWNWARD();
+ /** Error stack traversal direction - begin deep, end at API function */
public static final long H5E_WALK_UPWARD = H5E_WALK_UPWARD();
+ /** Generic low-level file I/O errors - Write failed */
public static final long H5E_WRITEERROR = H5E_WRITEERROR();
private static final int H5ES_STATUS_IN_PROGRESS = H5ES_STATUS_IN_PROGRESS();
@@ -423,29 +677,53 @@ public class HDF5Constants {
public static final int H5R_OBJECT1 = H5R_OBJECT1();
public static final int H5R_OBJECT2 = H5R_OBJECT2();
+ /** Define atomic datatypes */
public static final int H5S_ALL = H5S_ALL();
+ /** Define user-level maximum number of dimensions */
public static final int H5S_MAX_RANK = H5S_MAX_RANK();
+ /** Different types of dataspaces - error */
public static final int H5S_NO_CLASS = H5S_NO_CLASS();
+ /** Different types of dataspaces - null dataspace */
public static final int H5S_NULL = H5S_NULL();
+ /** Different types of dataspaces - scalar variable */
public static final int H5S_SCALAR = H5S_SCALAR();
+ /** Enumerated type for the type of selection - Entire extent selected */
public static final int H5S_SEL_ALL = H5S_SEL_ALL();
+ /** Enumerated type for the type of selection - Error */
public static final int H5S_SEL_ERROR = H5S_SEL_ERROR();
+ /** Enumerated type for the type of selection - Hyperslab selected */
public static final int H5S_SEL_HYPERSLABS = H5S_SEL_HYPERSLABS();
+ /** Enumerated type for the type of selection - LAST */
public static final int H5S_SEL_N = H5S_SEL_N();
+ /** Enumerated type for the type of selection - Nothing selected */
public static final int H5S_SEL_NONE = H5S_SEL_NONE();
+ /** Enumerated type for the type of selection - Points / elements selected */
public static final int H5S_SEL_POINTS = H5S_SEL_POINTS();
+ /** Different ways of combining selections - Binary "and" operation for hyperslabs */
public static final int H5S_SELECT_AND = H5S_SELECT_AND();
+ /** Different ways of combining selections - Append elements to end of point selection */
public static final int H5S_SELECT_APPEND = H5S_SELECT_APPEND();
+ /** Different ways of combining selections - Invalid upper bound on selection operations */
public static final int H5S_SELECT_INVALID = H5S_SELECT_INVALID();
+ /** Different ways of combining selections - error */
public static final int H5S_SELECT_NOOP = H5S_SELECT_NOOP();
+ /** Different ways of combining selections - Binary "not" operation for hyperslabs */
public static final int H5S_SELECT_NOTA = H5S_SELECT_NOTA();
+ /** Different ways of combining selections - Binary "not" operation for hyperslabs */
public static final int H5S_SELECT_NOTB = H5S_SELECT_NOTB();
+ /** Different ways of combining selections - Binary "or" operation for hyperslabs */
public static final int H5S_SELECT_OR = H5S_SELECT_OR();
+ /** Different ways of combining selections - Prepend elements to beginning of point selection */
public static final int H5S_SELECT_PREPEND = H5S_SELECT_PREPEND();
+ /** Different ways of combining selections - Select "set" operation */
public static final int H5S_SELECT_SET = H5S_SELECT_SET();
+ /** Different ways of combining selections - Binary "xor" operation for hyperslabs */
public static final int H5S_SELECT_XOR = H5S_SELECT_XOR();
+ /** Different types of dataspaces - simple dataspace */
public static final int H5S_SIMPLE = H5S_SIMPLE();
+ /** Define atomic datatypes */
public static final int H5S_UNLIMITED = H5S_UNLIMITED();
+
public static final long H5T_ALPHA_B16 = H5T_ALPHA_B16();
public static final long H5T_ALPHA_B32 = H5T_ALPHA_B32();
public static final long H5T_ALPHA_B64 = H5T_ALPHA_B64();
@@ -664,48 +942,96 @@ public class HDF5Constants {
public static final int H5_VOL_RESERVED = H5_VOL_RESERVED();
public static final int H5_VOL_MAX = H5_VOL_MAX();
+ /** Return values for filter callback function */
public static final int H5Z_CB_CONT = H5Z_CB_CONT();
+ /** Return values for filter callback function */
public static final int H5Z_CB_ERROR = H5Z_CB_ERROR();
+ /** Return values for filter callback function */
public static final int H5Z_CB_FAIL = H5Z_CB_FAIL();
+ /** Return values for filter callback function */
public static final int H5Z_CB_NO = H5Z_CB_NO();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_DISABLE_EDC = H5Z_DISABLE_EDC();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_ENABLE_EDC = H5Z_ENABLE_EDC();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_ERROR_EDC = H5Z_ERROR_EDC();
+ /** Filter IDs - deflation like gzip */
public static final int H5Z_FILTER_DEFLATE = H5Z_FILTER_DEFLATE();
+ /** Filter IDs - no filter */
public static final int H5Z_FILTER_ERROR = H5Z_FILTER_ERROR();
+ /** Filter IDs - fletcher32 checksum of EDC */
public static final int H5Z_FILTER_FLETCHER32 = H5Z_FILTER_FLETCHER32();
+ /** Filter IDs - maximum filter id */
public static final int H5Z_FILTER_MAX = H5Z_FILTER_MAX();
+ /** Filter IDs - nbit compression */
public static final int H5Z_FILTER_NBIT = H5Z_FILTER_NBIT();
+ /** Filter IDs - reserved indefinitely */
public static final int H5Z_FILTER_NONE = H5Z_FILTER_NONE();
+ /** Filter IDs - filter ids below this value are reserved for library use */
public static final int H5Z_FILTER_RESERVED = H5Z_FILTER_RESERVED();
+ /** Filter IDs - scale+offset compression */
public static final int H5Z_FILTER_SCALEOFFSET = H5Z_FILTER_SCALEOFFSET();
+ /** Filter IDs - shuffle the data */
public static final int H5Z_FILTER_SHUFFLE = H5Z_FILTER_SHUFFLE();
+ /** Filter IDs - szip compression */
public static final int H5Z_FILTER_SZIP = H5Z_FILTER_SZIP();
+ /** Flags for filter definition (stored)
+ * definition flag mask */
public static final int H5Z_FLAG_DEFMASK = H5Z_FLAG_DEFMASK();
+ /** Additional flags for filter invocation (not stored)
+ * invocation flag mask */
public static final int H5Z_FLAG_INVMASK = H5Z_FLAG_INVMASK();
+ /** Flags for filter definition (stored)
+ * filter is mandatory */
public static final int H5Z_FLAG_MANDATORY = H5Z_FLAG_MANDATORY();
+ /** Flags for filter definition (stored)
+ * filter is optional */
public static final int H5Z_FLAG_OPTIONAL = H5Z_FLAG_OPTIONAL();
+ /** Additional flags for filter invocation (not stored)
+ * reverse direction; read */
public static final int H5Z_FLAG_REVERSE = H5Z_FLAG_REVERSE();
+ /** Additional flags for filter invocation (not stored)
+ * skip EDC filters for read */
public static final int H5Z_FLAG_SKIP_EDC = H5Z_FLAG_SKIP_EDC();
+ /** Symbol to remove all filters in H5Premove_filter */
+ public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL();
+ /** Maximum number of filters allowed in a pipeline */
public static final int H5Z_MAX_NFILTERS = H5Z_MAX_NFILTERS();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_NO_EDC = H5Z_NO_EDC();
+ /** Bit flags for H5Zget_filter_info */
public static final int H5Z_FILTER_CONFIG_ENCODE_ENABLED = H5Z_FILTER_CONFIG_ENCODE_ENABLED();
+ /** Bit flags for H5Zget_filter_info */
public static final int H5Z_FILTER_CONFIG_DECODE_ENABLED = H5Z_FILTER_CONFIG_DECODE_ENABLED();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_INT_MINBITS_DEFAULT = H5Z_SO_INT_MINBITS_DEFAULT();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_FLOAT_DSCALE = H5Z_SO_FLOAT_DSCALE();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_FLOAT_ESCALE = H5Z_SO_FLOAT_ESCALE();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_INT = H5Z_SO_INT();
+ /** shuffle filter - Number of parameters that users can set */
public static final int H5Z_SHUFFLE_USER_NPARMS = H5Z_SHUFFLE_USER_NPARMS();
+ /** shuffle filter - Total number of parameters for filter */
public static final int H5Z_SHUFFLE_TOTAL_NPARMS = H5Z_SHUFFLE_TOTAL_NPARMS();
+ /** szip filter - Number of parameters that users can set */
public static final int H5Z_SZIP_USER_NPARMS = H5Z_SZIP_USER_NPARMS();
+ /** szip filter - Total number of parameters for filter */
public static final int H5Z_SZIP_TOTAL_NPARMS = H5Z_SZIP_TOTAL_NPARMS();
+ /** szip filter - "User" parameter for option mask */
public static final int H5Z_SZIP_PARM_MASK = H5Z_SZIP_PARM_MASK();
+ /** szip filter - "User" parameter for pixels-per-block */
public static final int H5Z_SZIP_PARM_PPB = H5Z_SZIP_PARM_PPB();
+ /** szip filter - "Local" parameter for bits-per-pixel */
public static final int H5Z_SZIP_PARM_BPP = H5Z_SZIP_PARM_BPP();
+ /** szip filter - "Local" parameter for pixels-per-scanline */
public static final int H5Z_SZIP_PARM_PPS = H5Z_SZIP_PARM_PPS();
+ /** nbit filter - Number of parameters that users can set */
public static final int H5Z_NBIT_USER_NPARMS = H5Z_NBIT_USER_NPARMS();
+ /** scale offset filter - Number of parameters that users can set */
public static final int H5Z_SCALEOFFSET_USER_NPARMS = H5Z_SCALEOFFSET_USER_NPARMS();
- public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL();
// /////////////////////////////////////////////////////////////////////////
// List of private native variables to get constant values from C //
@@ -840,6 +1166,8 @@ public class HDF5Constants {
private static native final long H5E_BADGROUP();
+ private static native final long H5E_BADITER();
+
private static native final long H5E_BADMESG();
private static native final long H5E_BADRANGE();
@@ -860,15 +1188,30 @@ public class HDF5Constants {
private static native final long H5E_CANAPPLY();
- // private static native final long H5E_CANTALLOC();
+ private static native final long H5E_CANTALLOC();
+
+ private static native final long H5E_CANTAPPEND();
+
+ private static native final long H5E_CANTATTACH();
+
+ private static native final long H5E_CANTCLEAN();
+
private static native final long H5E_CANTCLIP();
private static native final long H5E_CANTCLOSEFILE();
+ private static native final long H5E_CANTCLOSEOBJ();
+
+ private static native final long H5E_CANTCOMPARE();
+
+ private static native final long H5E_CANTCOMPUTE();
+
private static native final long H5E_CANTCONVERT();
private static native final long H5E_CANTCOPY();
+ private static native final long H5E_CANTCORK();
+
private static native final long H5E_CANTCOUNT();
private static native final long H5E_CANTCREATE();
@@ -881,18 +1224,36 @@ public class HDF5Constants {
private static native final long H5E_CANTDELETEFILE();
+ private static native final long H5E_CANTDEPEND();
+
+ private static native final long H5E_CANTDIRTY();
+
private static native final long H5E_CANTENCODE();
+ private static native final long H5E_CANTEXPUNGE();
+
+ private static native final long H5E_CANTEXTEND();
+
+ private static native final long H5E_CANTFILTER();
+
private static native final long H5E_CANTFLUSH();
private static native final long H5E_CANTFREE();
+ private static native final long H5E_CANTGATHER();
+
+ private static native final long H5E_CANTGC();
+
private static native final long H5E_CANTGET();
+ private static native final long H5E_CANTGETSIZE();
+
private static native final long H5E_CANTINC();
private static native final long H5E_CANTINIT();
+ private static native final long H5E_CANTINS();
+
private static native final long H5E_CANTINSERT();
private static native final long H5E_CANTLIST();
@@ -901,29 +1262,96 @@ public class HDF5Constants {
private static native final long H5E_CANTLOCK();
+// private static native final long H5E_CANTLOCKFILE();
+
+ private static native final long H5E_CANTMARKCLEAN();
+
+ private static native final long H5E_CANTMARKDIRTY();
+
+ private static native final long H5E_CANTMARKSERIALIZED();
+
+ private static native final long H5E_CANTMARKUNSERIALIZED();
+
+ private static native final long H5E_CANTMERGE();
+
+ private static native final long H5E_CANTMOVE();
+
+ private static native final long H5E_CANTMODIFY();
+
private static native final long H5E_CANTNEXT();
+ private static native final long H5E_CANTNOTIFY();
+
private static native final long H5E_CANTOPENFILE();
private static native final long H5E_CANTOPENOBJ();
- // private static native final long H5E_CANTRECV();
+ private static native final long H5E_CANTOPERATE();
+
+ private static native final long H5E_CANTPACK();
+
+ private static native final long H5E_CANTPIN();
+
+ private static native final long H5E_CANTPROTECT();
+
+ private static native final long H5E_CANTRECV();
+
+ private static native final long H5E_CANTREDISTRIBUTE();
+
private static native final long H5E_CANTREGISTER();
private static native final long H5E_CANTRELEASE();
+ private static native final long H5E_CANTREMOVE();
+
+ private static native final long H5E_CANTRENAME();
+
+ private static native final long H5E_CANTRESET();
+
+ private static native final long H5E_CANTRESIZE();
+
+ private static native final long H5E_CANTRESTORE();
+
+ private static native final long H5E_CANTREVIVE();
+
+ private static native final long H5E_CANTSHRINK();
+
private static native final long H5E_CANTSELECT();
private static native final long H5E_CANTSET();
+ private static native final long H5E_CANTSERIALIZE();
+
+ private static native final long H5E_CANTSORT();
+
private static native final long H5E_CANTSPLIT();
+ private static native final long H5E_CANTSWAP();
+
+ private static native final long H5E_CANTTAG();
+
+ private static native final long H5E_CANTUNCORK();
+
+ private static native final long H5E_CANTUNDEPEND();
+
private static native final long H5E_CANTUNLOCK();
+// private static native final long H5E_CANTUNLOCKFILE();
+
+ private static native final long H5E_CANTUNPIN();
+
+ private static native final long H5E_CANTUNPROTECT();
+
+ private static native final long H5E_CANTUNSERIALIZE();
+
+ private static native final long H5E_CANTUPDATE();
+
private static native final long H5E_CLOSEERROR();
private static native final long H5E_COMPLEN();
+ private static native final long H5E_CONTEXT();
+
private static native final long H5E_DATASET();
private static native final long H5E_DATASPACE();
@@ -934,10 +1362,16 @@ public class HDF5Constants {
private static native final long H5E_DUPCLASS();
+ private static native final long H5E_EARRAY();
+
private static native final long H5E_EFL();
+ private static native final long H5E_ERROR();
+
private static native final long H5E_EXISTS();
+ private static native final long H5E_FARRAY();
+
private static native final long H5E_FCNTL();
private static native final long H5E_FILE();
@@ -946,10 +1380,14 @@ public class HDF5Constants {
private static native final long H5E_FILEOPEN();
+ private static native final long H5E_FSPACE();
+
private static native final long H5E_FUNC();
private static native final long H5E_HEAP();
+ private static native final long H5E_INCONSISTENTSTATE();
+
private static native final long H5E_INTERNAL();
private static native final long H5E_IO();
@@ -958,8 +1396,12 @@ public class HDF5Constants {
private static native final long H5E_LINKCOUNT();
+ private static native final long H5E_LOGGING();
+
private static native final int H5E_MAJOR();
+ private static native final long H5E_MAP();
+
private static native final int H5E_MINOR();
private static native final long H5E_MOUNT();
@@ -968,6 +1410,12 @@ public class HDF5Constants {
private static native final long H5E_MPIERRSTR();
+ private static native final long H5E_NLINKS();
+
+ private static native final long H5E_NO_INDEPENDENT();
+
+ private static native final long H5E_NOENCODER();
+
private static native final long H5E_NOFILTER();
private static native final long H5E_NOIDS();
@@ -984,14 +1432,26 @@ public class HDF5Constants {
private static native final long H5E_NOTHDF5();
+ private static native final long H5E_NOTREGISTERED();
+
+ private static native final long H5E_OBJOPEN();
+
private static native final long H5E_OHDR();
+ private static native final long H5E_OPENERROR();
+
private static native final long H5E_OVERFLOW();
+ private static native final long H5E_PAGEBUF();
+
+ private static native final long H5E_PATH();
+
private static native final long H5E_PLINE();
private static native final long H5E_PLIST();
+ private static native final long H5E_PLUGIN();
+
private static native final long H5E_PROTECT();
private static native final long H5E_READERROR();
@@ -1004,12 +1464,24 @@ public class HDF5Constants {
private static native final long H5E_SEEKERROR();
+ private static native final long H5E_SETDISALLOWED();
+
private static native final long H5E_SETLOCAL();
+ private static native final long H5E_SLIST();
+
+ private static native final long H5E_SOHM();
+
private static native final long H5E_STORAGE();
private static native final long H5E_SYM();
+ private static native final long H5E_SYSERRSTR();
+
+ private static native final long H5E_SYSTEM();
+
+ private static native final long H5E_TRAVERSE();
+
private static native final long H5E_TRUNCATED();
private static native final long H5E_TST();
diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
index 988c8fb..69c9709 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
@@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5A_info_t;
-//Information class for link callback(for H5Aiterate)
+/**
+ * Information class for link callback for H5Aiterate.
+ *
+ */
public interface H5A_iterate_cb extends Callbacks {
- int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data);
+ /**
+ * application callback for each attribute
+ *
+ * @param loc_id the ID for the group or dataset being iterated over
+ * @param name the name of the current attribute about the object
+ * @param info the attribute's "info" struct
+ * @param op_data the operator data passed in to H5Aiterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5A_info_t info, H5A_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
index 51d67d5..bdc96fa 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Aiterate.
+ *
+ */
public interface H5A_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
index ead8f73..8ad336f 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pset/get_append_flush)
+/**
+ * Information class for link callback for H5Pset/get_append_flush.
+ *
+ */
public interface H5D_append_cb extends Callbacks {
+ /**
+ * application callback for each dataset access property list
+ *
+ * @param dataset_id the ID for the dataset being iterated over
+ * @param cur_dims the dimension sizes for determining boundary
+ * @param op_data the operator data passed in to H5Pset/get_append_flush
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long dataset_id, long[] cur_dims, H5D_append_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
index 8bf6410..795ed1e 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Dappend.
+ *
+ */
public interface H5D_append_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
index a911a1c..ca10342 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
@@ -13,7 +13,29 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Diterate)
+/**
+ * Information class for link callback for H5Diterate.
+ *
+ */
public interface H5D_iterate_cb extends Callbacks {
+ /**
+ * application callback for each dataset element
+ *
+ * @param elem the pointer to the element in memory containing the current point
+ * @param elem_type the datatype ID for the elements stored in elem
+ * @param ndim the number of dimensions for POINT array
+ * @param point the array containing the location of the element within the original dataspace
+ * @param op_data the operator data passed in to H5Diterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(byte[] elem, long elem_type, int ndim, long[] point, H5D_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
index d049711..43fc159 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Diterate.
+ *
+ */
public interface H5D_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
index afc04ae..e5914c1 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
@@ -15,7 +15,27 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5E_error2_t;
-//Information class for link callback(for H5Ewalk)
+/**
+ * Information class for link callback for H5Ewalk.
+ *
+ */
public interface H5E_walk_cb extends Callbacks {
+ /**
+ * application callback for each error stack element
+ *
+ * @param nidx the index of the current error stack element
+ * @param info the error stack "info" struct
+ * @param op_data the operator data passed in to H5Ewalk
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
index 0be8977..3ff09ec 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Ewalk.
+ *
+ */
public interface H5E_walk_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
index ad9ad8c..ad28b04 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Lvisit/H5Lvisit_by_name.
+ *
+ */
public interface H5L_iterate_opdata_t {
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
index f92fbc4..d08001a 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
@@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5L_info_t;
-// Information class for link callback (for H5Lvisit/H5Lvisit_by_name).
+/**
+ * Information class for link callback for H5Lvisit/H5Lvisit_by_name.
+ *
+ */
public interface H5L_iterate_t extends Callbacks {
- int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data);
+ /**
+ * application callback for each group
+ *
+ * @param loc_id the ID for the group being iterated over
+ * @param name the name of the current link
+ * @param info the link's "info" struct
+ * @param op_data the operator data passed in to H5Literate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5L_info_t info, H5L_iterate_opdata_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
index e1c47b5..15eb1a1 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Ovisit/H5Ovisit_by_name.
+ *
+ */
public interface H5O_iterate_opdata_t {
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
index 9a55106..e627775 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
@@ -15,7 +15,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5O_info_t;
-// Information class for link callback(for H5Ovisit/H5Ovisit_by_name)
+/**
+ * Information class for link callback for H5Ovisit/H5Ovisit_by_name.
+ *
+ */
public interface H5O_iterate_t extends Callbacks {
- int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data);
+ /**
+ * application callback for each group
+ *
+ * @param loc_id the ID for the group or dataset being iterated over
+ * @param name the name of the current object
+ * @param info the object's "info" struct
+ * @param op_data the operator data passed in to H5Oiterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5O_info_t info, H5O_iterate_opdata_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
index e77d386..78a87ad 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
@@ -13,7 +13,26 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_close_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list class being iterated over
+ * @param close_data the function to call when a property list is closed
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, H5P_cls_close_func_t close_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
index 0d5ad9e..709ee494 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_close_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
index 139f877..878bbd3 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class
+ *
+ */
public interface H5P_cls_copy_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param new_prop_id the ID for the property list copy
+ * @param old_prop_id the ID for the property list class being copied
+ * @param copy_data the function to call when each property list in this class is copied
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long new_prop_id, long old_prop_id, H5P_cls_copy_func_t copy_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
index 12c2601..b3e7f09 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_copy_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
index e64ec6f..88d0aa6 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
@@ -13,7 +13,26 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_create_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list class being iterated over
+ * @param create_data the function to call when each property list in this class is created
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, H5P_cls_create_func_t create_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
index 73646f1..8e259cc 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_create_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
index 5ecb88d..60e1884 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Piterate)
+/**
+ * Information class for link callback for H5Piterate.
+ *
+ */
public interface H5P_iterate_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param plist the ID for the property list being iterated over
+ * @param name the name of the current property list
+ * @param op_data the operator data passed in to H5Piterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long plist, String name, H5P_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
index 2e320b4..4c5d222 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
@@ -13,6 +13,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Piterate.
+ *
+ */
public interface H5P_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
index 103fe5f..40569bc 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_close_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property being closed
+ * @param size the size of the property value
+ * @param value the value of the property being closed
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
index 46477b9..cc466a6 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_compare_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param value1 the value of the first property being compared
+ * @param value2 the value of the second property being compared
+ * @param size the size of the property value
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(byte[] value1, byte[] value2, long size);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
index 57994bb5..59e4bb8 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_copy_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property being copied
+ * @param size the size of the property value
+ * @param value the value of the property being copied
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
index 8791c22..5c6df7a 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
@@ -13,7 +13,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_create_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property list being created
+ * @param size the size of the property value
+ * @param value the initial value for the property being created
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
index 46cd097..5206d4f 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
@@ -13,7 +13,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_delete_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID of the property list the property is deleted from
+ * @param name the name of the property being deleted
+ * @param size the size of the property value
+ * @param value the value of the property being deleted
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
index 04599a0..8f44497 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
@@ -13,7 +13,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_get_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list being queried
+ * @param name the name of the property being queried
+ * @param size the size of the property value
+ * @param value the value being retrieved for the property
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
index 6ac750f..2a2d3a1 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
@@ -13,7 +13,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_set_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list being modified
+ * @param name the name of the property being modified
+ * @param size the size of the property value
+ * @param value the value being set for the property
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
index 1e4b5fd..70fdd11 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
@@ -31,6 +31,9 @@ package hdf.hdf5lib.exceptions;
*
*/
public class HDF5Exception extends RuntimeException {
+ /**
+ * the specified detail message of this exception
+ */
protected String detailMessage;
/**
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
index ea4a89a..fea5b6d 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
@@ -13,6 +13,12 @@
package hdf.hdf5lib.exceptions;
+/**
+ * The class HDF5LibraryException returns errors raised by the HDF5 library.
+ * <p>
+ * This sub-class represents HDF-5 major error code <b>H5E_REFERENCE</b>
+ */
+
public class HDF5ReferenceException extends HDF5LibraryException {
/**
* Constructs an <code>HDF5ReferenceException</code> with no specified
diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
index 20863dc..a118d05 100644
--- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for H5Pget_mdc_config/H5Pset_mdc_config
+/**
+ * Information struct for H5Pget_mdc_config/H5Pset_mdc_config
+ *
+ */
public class H5AC_cache_config_t implements Serializable{
private static final long serialVersionUID = -6748085696476149972L;
// general configuration fields:
diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
index a46a495..cd7a397 100644
--- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name)
+/**
+ * Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name)
+ *
+ */
public class H5A_info_t implements Serializable{
private static final long serialVersionUID = 2791443594041667613L;
public boolean corder_valid; // Indicate if creation order is valid
diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
index 257ad05..083537f 100644
--- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for Attribute (For H5Ewalk)
+/**
+ * Information struct for Attribute (For H5Ewalk)
+ *
+ */
public class H5E_error2_t implements Serializable{
private static final long serialVersionUID = 279144359041667613L;
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
index 9fcff2e..26690ec 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
@@ -16,7 +16,7 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-/*
+/**
* Java representation of the HDFS VFD file access property list (fapl)
* structure.
*
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
index a899e10..735cc7e 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
@@ -16,7 +16,7 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-/*
+/**
* Java representation of the ROS3 VFD file access property list (fapl)
* structure.
*
diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
index 4664b5b..836b683 100644
--- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for object (for H5Fget_info)
+/**
+ * Information struct for object (for H5Fget_info)
+ *
+ */
public class H5F_info2_t implements Serializable{
private static final long serialVersionUID = 4691681162544054518L;
public int super_version; // Superblock version #
diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
index 56c876e..9a5c72e 100644
--- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+/**
+ * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+ *
+ */
public class H5G_info_t implements Serializable{
private static final long serialVersionUID = -3746463015312132912L;
public int storage_type; // Type of storage for links in group
diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
index 377e617..16d9bbf 100644
--- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
@@ -17,7 +17,10 @@ import java.io.Serializable;
import hdf.hdf5lib.HDF5Constants;
-// Information struct for link (for H5Lget_info/H5Lget_info_by_idx)
+/**
+ * Information struct for link (for H5Lget_info/H5Lget_info_by_idx)
+ *
+ */
public class H5L_info_t implements Serializable {
private static final long serialVersionUID = -4754320605310155033L;
public int type;
diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
index 73aaa47..df76638 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+/**
+ * Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ *
+ */
public class H5O_hdr_info_t implements Serializable {
private static final long serialVersionUID = 7883826382952577189L;
public int version; /* Version number of header format in file */
@@ -56,25 +59,25 @@ public class H5O_hdr_info_t implements Serializable {
H5O_hdr_info_t info = (H5O_hdr_info_t) o;
if (this.version != info.version)
- return false;
+ return false;
if (this.nmesgs != info.nmesgs)
- return false;
+ return false;
if (this.nchunks != info.nchunks)
- return false;
+ return false;
if (this.flags != info.flags)
- return false;
+ return false;
if (this.space_total != info.space_total)
- return false;
+ return false;
if (this.space_meta != info.space_meta)
- return false;
+ return false;
if (this.space_mesg != info.space_mesg)
- return false;
+ return false;
if (this.space_free != info.space_free)
- return false;
+ return false;
if (this.mesg_present != info.mesg_present)
- return false;
+ return false;
if (this.mesg_shared != info.mesg_shared)
- return false;
+ return false;
return true;
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
index 6a26a10..2f76384 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+/**
+ * Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ *
+ */
public class H5O_info_t implements Serializable {
private static final long serialVersionUID = 4691681163544054518L;
public long fileno; /* File number that object is located in */
diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
index f410a7f..89a5c5f 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
+/**
+ * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
+ *
+ */
public class H5O_native_info_t implements Serializable {
private static final long serialVersionUID = 7883826382952577189L;
@@ -45,7 +48,7 @@ public class H5O_native_info_t implements Serializable {
if (!this.hdr_info.equals(info.hdr_info)
|| !this.obj_info.equals(info.obj_info)
|| !this.attr_info.equals(info.attr_info))
- return false;
+ return false;
return true;
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
index e6d2474..be934e4 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_token_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
@@ -17,7 +17,10 @@ import java.util.Arrays;
import hdf.hdf5lib.HDF5Constants;
-// Object token, which is a unique and permanent identifier, for an HDF5 object within a container.
+/**
+ * Object token, which is a unique and permanent identifier, for an HDF5 object within a container.
+ *
+ */
public class H5O_token_t implements Serializable {
private static final long serialVersionUID = -4754320605310155032L;
public byte[] data;
diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
index 7159f02..1c3ab80 100644
--- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
@@ -15,7 +15,10 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+/**
+ * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+ *
+ */
public class H5_ih_info_t implements Serializable {
private static final long serialVersionUID = -142238015615462707L;
public long index_size; /* btree and/or list */
@@ -38,9 +41,9 @@ public class H5_ih_info_t implements Serializable {
H5_ih_info_t info = (H5_ih_info_t) o;
if (this.index_size != info.index_size)
- return false;
+ return false;
if (this.heap_size != info.heap_size)
- return false;
+ return false;
return true;
}
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index 66a3389..ade28e8 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -355,6 +355,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1BADGROUP(JNIEnv *env, jclass cls)
return H5E_BADGROUP;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1BADITER(JNIEnv *env, jclass cls)
+{
+ return H5E_BADITER;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1BADMESG(JNIEnv *env, jclass cls)
{
return H5E_BADMESG;
@@ -404,8 +409,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANAPPLY(JNIEnv *env, jclass cls)
{
return H5E_CANAPPLY;
}
-/*JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls) { return H5E_CANTALLOC; }*/
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTALLOC;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTAPPEND(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTAPPEND;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTATTACH(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTATTACH;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLEAN(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTCLEAN;
+}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLIP(JNIEnv *env, jclass cls)
{
@@ -417,6 +440,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEFILE(JNIEnv *env, jclass cls)
return H5E_CANTCLOSEFILE;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEOBJ(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTCLOSEOBJ;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPARE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTCOMPARE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPUTE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTCOMPUTE;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCONVERT(JNIEnv *env, jclass cls)
{
return H5E_CANTCONVERT;
@@ -427,6 +465,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOPY(JNIEnv *env, jclass cls)
return H5E_CANTCOPY;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCORK(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTCORK;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOUNT(JNIEnv *env, jclass cls)
{
return H5E_CANTCOUNT;
@@ -457,11 +500,36 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETEFILE(JNIEnv *env, jclass cls)
return H5E_CANTDELETEFILE;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDEPEND(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTDEPEND;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDIRTY(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTDIRTY;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFILTER(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTFILTER;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTENCODE(JNIEnv *env, jclass cls)
{
return H5E_CANTENCODE;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXPUNGE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTEXPUNGE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXTEND(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTEXTEND;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFLUSH(JNIEnv *env, jclass cls)
{
return H5E_CANTFLUSH;
@@ -472,11 +540,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFREE(JNIEnv *env, jclass cls)
return H5E_CANTFREE;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGATHER(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTGATHER;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGC(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTGC;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGET(JNIEnv *env, jclass cls)
{
return H5E_CANTGET;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGETSIZE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTGETSIZE;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINC(JNIEnv *env, jclass cls)
{
return H5E_CANTINC;
@@ -487,6 +570,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINIT(JNIEnv *env, jclass cls)
return H5E_CANTINIT;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINS(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTINS;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINSERT(JNIEnv *env, jclass cls)
{
return H5E_CANTINSERT;
@@ -506,12 +594,59 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCK(JNIEnv *env, jclass cls)
{
return H5E_CANTLOCK;
}
+/*
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCKFILE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTLOCKFILE;
+}
+*/
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKCLEAN(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMARKCLEAN;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKDIRTY(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMARKDIRTY;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKSERIALIZED(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMARKSERIALIZED;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKUNSERIALIZED(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMARKUNSERIALIZED;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMERGE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMERGE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMODIFY(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMODIFY;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMOVE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTMOVE;
+}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNEXT(JNIEnv *env, jclass cls)
{
return H5E_CANTNEXT;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNOTIFY(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTNOTIFY;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENFILE(JNIEnv *env, jclass cls)
{
return H5E_CANTOPENFILE;
@@ -521,8 +656,36 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENOBJ(JNIEnv *env, jclass cls)
{
return H5E_CANTOPENOBJ;
}
-/*JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls) { return H5E_CANTRECV; }*/
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPERATE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTOPERATE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPACK(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTPACK;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPIN(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTPIN;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPROTECT(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTPROTECT;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTRECV;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREDISTRIBUTE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTREDISTRIBUTE;
+}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREGISTER(JNIEnv *env, jclass cls)
{
@@ -534,6 +697,41 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRELEASE(JNIEnv *env, jclass cls)
return H5E_CANTRELEASE;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREMOVE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTREMOVE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRENAME(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTRENAME;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESET(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTRESET;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESIZE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTRESIZE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESTORE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTRESTORE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREVIVE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTREVIVE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSHRINK(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTSHRINK;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSELECT(JNIEnv *env, jclass cls)
{
return H5E_CANTSELECT;
@@ -544,15 +742,72 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSET(JNIEnv *env, jclass cls)
return H5E_CANTSET;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSERIALIZE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTSERIALIZE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSORT(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTSORT;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSPLIT(JNIEnv *env, jclass cls)
{
return H5E_CANTSPLIT;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSWAP(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTSWAP;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTTAG(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTTAG;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNCORK(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNCORK;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNDEPEND(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNDEPEND;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCK(JNIEnv *env, jclass cls)
{
return H5E_CANTUNLOCK;
}
+/*
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCKFILE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNLOCKFILE;
+}
+*/
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPIN(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNPIN;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPROTECT(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNPROTECT;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNSERIALIZE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUNSERIALIZE;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUPDATE(JNIEnv *env, jclass cls)
+{
+ return H5E_CANTUPDATE;
+}
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1CLOSEERROR(JNIEnv *env, jclass cls)
{
@@ -564,6 +819,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1COMPLEN(JNIEnv *env, jclass cls)
return H5E_COMPLEN;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1CONTEXT(JNIEnv *env, jclass cls)
+{
+ return H5E_CONTEXT;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASET(JNIEnv *env, jclass cls)
{
return H5E_DATASET;
@@ -589,16 +849,31 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1DUPCLASS(JNIEnv *env, jclass cls)
return H5E_DUPCLASS;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1EARRAY(JNIEnv *env, jclass cls)
+{
+ return H5E_EARRAY;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1EFL(JNIEnv *env, jclass cls)
{
return H5E_EFL;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1ERROR(JNIEnv *env, jclass cls)
+{
+ return H5E_ERROR;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1EXISTS(JNIEnv *env, jclass cls)
{
return H5E_EXISTS;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1FARRAY(JNIEnv *env, jclass cls)
+{
+ return H5E_FARRAY;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1FCNTL(JNIEnv *env, jclass cls)
{
return H5E_FCNTL;
@@ -619,6 +894,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEOPEN(JNIEnv *env, jclass cls)
return H5E_FILEOPEN;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1FSPACE(JNIEnv *env, jclass cls)
+{
+ return H5E_FSPACE;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1FUNC(JNIEnv *env, jclass cls)
{
return H5E_FUNC;
@@ -629,6 +909,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1HEAP(JNIEnv *env, jclass cls)
return H5E_HEAP;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1INCONSISTENTSTATE(JNIEnv *env, jclass cls)
+{
+ return H5E_INCONSISTENTSTATE;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1INTERNAL(JNIEnv *env, jclass cls)
{
return H5E_INTERNAL;
@@ -648,11 +933,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1LINKCOUNT(JNIEnv *env, jclass cls)
{
return H5E_LINKCOUNT;
}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1LOGGING(JNIEnv *env, jclass cls)
+{
+ return H5E_LOGGING;
+}
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1MAJOR(JNIEnv *env, jclass cls)
{
return H5E_MAJOR;
}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1MAP(JNIEnv *env, jclass cls)
+{
+ return H5E_MAP;
+}
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1MINOR(JNIEnv *env, jclass cls)
{
@@ -674,6 +969,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1MPIERRSTR(JNIEnv *env, jclass cls)
return H5E_MPIERRSTR;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1NLINKS(JNIEnv *env, jclass cls)
+{
+ return H5E_NLINKS;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1NO_1INDEPENDENT(JNIEnv *env, jclass cls)
+{
+ return H5E_NO_INDEPENDENT;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1NOENCODER(JNIEnv *env, jclass cls)
+{
+ return H5E_NOENCODER;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1NOFILTER(JNIEnv *env, jclass cls)
{
return H5E_NOFILTER;
@@ -714,16 +1024,41 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTHDF5(JNIEnv *env, jclass cls)
return H5E_NOTHDF5;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTREGISTERED(JNIEnv *env, jclass cls)
+{
+ return H5E_NOTREGISTERED;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1OBJOPEN(JNIEnv *env, jclass cls)
+{
+ return H5E_OBJOPEN;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1OHDR(JNIEnv *env, jclass cls)
{
return H5E_OHDR;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1OPENERROR(JNIEnv *env, jclass cls)
+{
+ return H5E_OPENERROR;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1OVERFLOW(JNIEnv *env, jclass cls)
{
return H5E_OVERFLOW;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1PAGEBUF(JNIEnv *env, jclass cls)
+{
+ return H5E_PAGEBUF;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1PATH(JNIEnv *env, jclass cls)
+{
+ return H5E_PATH;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1PLINE(JNIEnv *env, jclass cls)
{
return H5E_PLINE;
@@ -734,6 +1069,11 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1PLIST(JNIEnv *env, jclass cls)
return H5E_PLIST;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1PLUGIN(JNIEnv *env, jclass cls)
+{
+ return H5E_PLUGIN;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1PROTECT(JNIEnv *env, jclass cls)
{
return H5E_PROTECT;
@@ -764,11 +1104,26 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1SEEKERROR(JNIEnv *env, jclass cls)
return H5E_SEEKERROR;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1SETDISALLOWED(JNIEnv *env, jclass cls)
+{
+ return H5E_SETDISALLOWED;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1SETLOCAL(JNIEnv *env, jclass cls)
{
return H5E_SETLOCAL;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1SLIST(JNIEnv *env, jclass cls)
+{
+ return H5E_SLIST;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1SOHM(JNIEnv *env, jclass cls)
+{
+ return H5E_SOHM;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1STORAGE(JNIEnv *env, jclass cls)
{
return H5E_STORAGE;
@@ -779,6 +1134,21 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1SYM(JNIEnv *env, jclass cls)
return H5E_SYM;
}
JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSERRSTR(JNIEnv *env, jclass cls)
+{
+ return H5E_SYSERRSTR;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSTEM(JNIEnv *env, jclass cls)
+{
+ return H5E_SYSTEM;
+}
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_HDF5Constants_H5E_1TRAVERSE(JNIEnv *env, jclass cls)
+{
+ return H5E_TRAVERSE;
+}
+JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5E_1TRUNCATED(JNIEnv *env, jclass cls)
{
return H5E_TRUNCATED;
diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c
index 2a9cff5..f7b65d9 100644
--- a/java/src/jni/h5sImp.c
+++ b/java/src/jni/h5sImp.c
@@ -1340,6 +1340,389 @@ done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_copy
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *env, jclass clss, jlong dst_id, jlong src_id)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Sselect_copy((hid_t)dst_id, (hid_t)src_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1copy */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_shape_same
+ * Signature: (JJ)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *env, jclass clss, jlong space1_id, jlong space2_id)
+{
+ htri_t bval = JNI_FALSE;
+
+ UNUSED(clss);
+
+ if ((bval = H5Sselect_shape_same((hid_t)space1_id, (hid_t)space2_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+done:
+ return (jboolean)bval;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_adjust
+ * Signature: (J[J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id, jlongArray offset)
+{
+ jboolean isCopy;
+ hssize_t *offst = NULL;
+ jlong * offsetP = NULL;
+ jsize offset_rank = -1;
+ int i, rank = -1;
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if (space_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: invalid dataspace ID");
+
+ if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == offset) {
+ offsetP = NULL;
+ offst = (hssize_t *)offsetP;
+ }
+ else {
+ if ((offset_rank = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset length < 0");
+ }
+
+ if (offset_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, offset, offsetP, &isCopy, "H5Sselect_adjust: offset not pinned");
+
+ if (NULL == (offst = (hssize_t *)HDmalloc((size_t)offset_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_adjust: failed to allocate offset buffer");
+ }
+
+ if ((status = H5Sselect_adjust(space_id, (hssize_t *)offst)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ for (i = 0; i < offset_rank; i++) {
+ offsetP[i] = (jlong)offst[i];
+ } /* end for */
+
+done:
+ if (offst)
+ HDfree(offst);
+ if (offsetP)
+ UNPIN_LONG_ARRAY(ENVONLY, offset, offsetP, (status < 0) ? JNI_ABORT : 0);
+
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1adjust */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_intersect_block
+ * Signature: (J[J[J)Z
+ */
+JNIEXPORT jboolean JNICALL
+Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong space_id, jlongArray start,
+ jlongArray end)
+{
+ htri_t bval = JNI_FALSE;
+ jboolean isCopy;
+ hsize_t *strt = NULL, *nd = NULL;
+ jlong * startP = NULL, *endP = NULL;
+ jsize start_rank = -1, end_rank = -1;
+ int i, rank = -1;
+
+ UNUSED(clss);
+
+ if (space_id < 0)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: invalid dataspace ID");
+
+ if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ if (NULL == start) {
+ startP = NULL;
+ strt = (hsize_t *)startP;
+ }
+ else {
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: start length < 0");
+ }
+
+ if (start_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY,
+ "H5Sselect_intersect_block: start rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_intersect_block: start not pinned");
+
+ if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate start buffer");
+ }
+
+ if (NULL == end) {
+ endP = NULL;
+ nd = (hsize_t *)endP;
+ }
+ else {
+ if ((end_rank = ENVPTR->GetArrayLength(ENVONLY, end)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: end array length < 0");
+ }
+
+ if (end_rank != rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY,
+ "H5Sselect_intersect_block: end rank doesn't match dataspace rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sselect_intersect_block: end not pinned");
+
+ if (NULL == (nd = (hsize_t *)HDmalloc((size_t)end_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate end buffer");
+ }
+
+ if ((bval = H5Sselect_intersect_block(space_id, (hsize_t *)strt, (hsize_t *)nd)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+ bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
+
+ for (i = 0; i < start_rank; i++) {
+ startP[i] = (jlong)strt[i];
+ endP[i] = (jlong)nd[i];
+ } /* end for */
+
+done:
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, (bval < 0) ? JNI_ABORT : 0);
+ if (nd)
+ HDfree(nd);
+ if (endP)
+ UNPIN_LONG_ARRAY(ENVONLY, end, endP, (bval < 0) ? JNI_ABORT : 0);
+
+ return (jboolean)bval;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_project_intersection
+ * Signature: (JJJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *env, jclass clss, jlong src_space_id,
+ jlong dst_space_id, jlong src_intersect_space_id)
+{
+ hid_t sid = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((sid = H5Sselect_project_intersection(src_space_id, dst_space_id, src_intersect_space_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+
+ return (jlong)sid;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Scombine_hyperslab
+ * Signature: (JI[J[J[J[J)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start,
+ jlongArray stride, jlongArray count, jlongArray block)
+{
+ jboolean isCopy;
+ hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL;
+ hsize_t *lp = NULL;
+ jlong * startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL;
+ jlong * jlp = NULL;
+ jsize start_rank, stride_rank, count_rank, block_rank;
+ int i;
+ hid_t sid = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if (NULL == start)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start is NULL");
+ if (NULL == count)
+ H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count is NULL");
+
+ if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start array length < 0");
+ }
+ if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count array length < 0");
+ }
+
+ if (start_rank != count_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Scombine_hyperslab: start not pinned");
+
+ if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate start buffer");
+
+ jlp = (jlong *)startP;
+ for (i = 0; i < start_rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end if */
+
+ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Scombine_hyperslab: count not pinned");
+
+ if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate count buffer");
+
+ jlp = (jlong *)countP;
+ for (i = 0; i < count_rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end if */
+
+ if (NULL == stride) {
+ strideP = NULL;
+ strd = (hsize_t *)strideP;
+ }
+ else {
+ if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride array length < 0");
+ }
+
+ if (stride_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Scombine_hyperslab: stride not pinned");
+
+ if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate stride buffer");
+
+ jlp = (jlong *)strideP;
+ for (i = 0; i < stride_rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end if */
+ }
+
+ if (NULL == block) {
+ blockP = NULL;
+ blk = (hsize_t *)blockP;
+ }
+ else {
+ if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) {
+ CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block array length < 0");
+ }
+
+ if (block_rank != start_rank)
+ H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block and start have different rank!");
+
+ PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Scombine_hyperslab: block not pinned");
+
+ if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate block buffer");
+
+ jlp = (jlong *)blockP;
+ for (i = 0; i < block_rank; i++) {
+ *lp = (hsize_t)*jlp;
+ lp++;
+ jlp++;
+ } /* end for */
+ }
+
+ if ((sid = H5Scombine_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, (const hsize_t *)strd,
+ (const hsize_t *)cnt, (const hsize_t *)blk)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ if (blk)
+ HDfree(blk);
+ if (blockP)
+ UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT);
+ if (strd)
+ HDfree(strd);
+ if (strideP)
+ UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT);
+ if (cnt)
+ HDfree(cnt);
+ if (countP)
+ UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT);
+ if (strt)
+ HDfree(strt);
+ if (startP)
+ UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT);
+
+ return (jlong)sid;
+} /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Smodify_select
+ * Signature: (JIJ)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id)
+{
+ herr_t status = FAIL;
+
+ UNUSED(clss);
+
+ if ((status = H5Smodify_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+ return;
+} /* end Java_hdf_hdf5lib_H5_H5Smodify_1select */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Scombine_select
+ * Signature: (JIJ)J
+ */
+JNIEXPORT jlong JNICALL
+Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id)
+{
+ hid_t sid = H5I_INVALID_HID;
+
+ UNUSED(clss);
+
+ if ((sid = H5Scombine_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0)
+ H5_LIBRARY_ERROR(ENVONLY);
+
+done:
+
+ return (jlong)sid;
+} /* end Java_hdf_hdf5lib_H5_H5Scombine_1select */
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5sImp.h b/java/src/jni/h5sImp.h
index ee28b39..83255c1 100644
--- a/java/src/jni/h5sImp.h
+++ b/java/src/jni/h5sImp.h
@@ -259,6 +259,65 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab(JNIEnv
JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *, jclass, jlong, jlongArray,
jlongArray, jlongArray, jlongArray);
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_copy
+ * Signature: (JJ)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_shape_same
+ * Signature: (JJ)Z
+ */
+JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *, jclass, jlong, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_adjust
+ * Signature: (J[J)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *, jclass, jlong, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_intersect_block
+ * Signature: (J[J[J)Z
+ */
+JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *, jclass, jlong,
+ jlongArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Sselect_project_intersection
+ * Signature: (JJJ)J
+ */
+JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *, jclass, jlong, jlong,
+ jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Scombine_hyperslab
+ * Signature: (JI[J[J[J[J)J
+ */
+JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *, jclass, jlong, jint, jlongArray,
+ jlongArray, jlongArray, jlongArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Smodify_select
+ * Signature: (JIJ)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *, jclass, jlong, jint, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Scombine_select
+ * Signature: (JIJ)J
+ */
+JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *, jclass, jlong, jint, jlong);
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/test/TestH5Sbasic.java b/java/test/TestH5Sbasic.java
index 2173647..9874584 100644
--- a/java/test/TestH5Sbasic.java
+++ b/java/test/TestH5Sbasic.java
@@ -242,4 +242,142 @@ public class TestH5Sbasic {
H5.H5Sdecode(null);
}
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sget_regular_hyperslab_invalid() throws Throwable {
+ long q_start[] = new long[2];
+ long q_stride[] = new long[2];
+ long q_count[] = new long[2];
+ long q_block[] = new long[2];
+
+ H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block);
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
+ public void testH5Sselect_copy_invalid() throws Throwable {
+ H5.H5Sselect_copy(-1, -1);
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
+ public void testH5Sselect_shape_same_invalid() throws Throwable {
+ H5.H5Sselect_shape_same(-1, -1);
+ }
+
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sselect_adjust_invalid() throws Throwable {
+ long offset[][] = {{0,1},{2,4},{5,6}};
+ H5.H5Sselect_adjust(-1, offset);
+ }
+
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sselect_adjust_rank_offset() throws Throwable {
+ long sid = -1;
+ long offset[][] = {{0,1},{2,4},{5,6}};
+
+ try {
+ sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
+ assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ H5.H5Sselect_adjust(sid, offset);
+ }
+ finally {
+ try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ }
+ }
+
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sselect_intersect_block_invalid() throws Throwable {
+ long start[] = new long[2];
+ long end[] = new long[2];
+ H5.H5Sselect_intersect_block(-1, start, end);
+ }
+
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sselect_intersect_block_rank_start() throws Throwable {
+ long sid = -1;
+ long start[] = new long[2];
+ long end[] = null;
+
+ try {
+ sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
+ assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ H5.H5Sselect_intersect_block(sid, start, end);
+ }
+ finally {
+ try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ }
+ }
+
+ @Test(expected = IllegalArgumentException.class)
+ public void testH5Sselect_intersect_block_rank_end() throws Throwable {
+ long sid = -1;
+ long start[] = null;
+ long end[] = new long[2];
+
+ try {
+ sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
+ assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ H5.H5Sselect_intersect_block(sid, start, end);
+ }
+ finally {
+ try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ }
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
+ public void testH5Sselect_project_intersection_invalid() throws Throwable {
+ H5.H5Sselect_project_intersection(-1, -1, -1);
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
+ public void testH5Scombine_hyperslab_invalid() throws Throwable {
+ long start[] = new long[2];
+ long count[] = new long[2];
+ H5.H5Scombine_hyperslab(-1, 0, start, null, count, null);
+ }
+
+ @Test(expected = NullPointerException.class)
+ public void testH5Scombine_hyperslab_null_start() throws Throwable {
+ long sid = -1;
+ long start[] = null;
+ long stride[] = null;
+ long count[] = new long[2];
+ long block[] = null;
+
+ try {
+ sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
+ assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
+ }
+ finally {
+ try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ }
+ }
+
+ @Test(expected = NullPointerException.class)
+ public void testH5Scombine_hyperslab_null_count() throws Throwable {
+ long sid = -1;
+ long start[] = new long[2];
+ long stride[] = null;
+ long count[] = null;
+ long block[] = null;
+
+ try {
+ sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
+ assertTrue("H5.H5Screate_simple_extent",sid > 0);
+ H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
+ }
+ finally {
+ try {H5.H5Sclose(sid);} catch (Exception ex) {}
+ }
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
+ public void testH5Smodify_select_invalid() throws Throwable {
+ H5.H5Smodify_select(-1, 0, -1);
+ }
+
+ @Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
+ public void testH5Scombine_select_invalid() throws Throwable {
+ H5.H5Scombine_select(-1, 0, -1);
+ }
+
}
diff --git a/java/test/testfiles/JUnit-TestH5Sbasic.txt b/java/test/testfiles/JUnit-TestH5Sbasic.txt
index 707878e..3422442 100644
--- a/java/test/testfiles/JUnit-TestH5Sbasic.txt
+++ b/java/test/testfiles/JUnit-TestH5Sbasic.txt
@@ -5,18 +5,32 @@ JUnit version 4.11
.testH5Sdecode_null
.testH5Screate_simple_dims_exceed
.testH5Screate_simple_unlimted_1d
+.testH5Sselect_intersect_block_rank_start
+.testH5Sget_regular_hyperslab_invalid
+.testH5Sselect_adjust_rank_offset
.testH5Screate_simple_dims_invalid
.testH5Screate_scalar
.testH5Screate_simple
+.testH5Sselect_project_intersection_invalid
.testH5Screate_simple_rank_invalid
.testH5Sget_simple_extent_type_invalid
+.testH5Scombine_hyperslab_invalid
+.testH5Scombine_hyperslab_null_count
+.testH5Scombine_hyperslab_null_start
.testH5Sencode_invalid
.testH5Screate_null
.testH5Screate_simple_extent
.testH5Screate_invalid
+.testH5Sselect_intersect_block_invalid
+.testH5Sselect_adjust_invalid
.testH5Screate_simple_unlimted
+.testH5Sselect_shape_same_invalid
+.testH5Smodify_select_invalid
+.testH5Scombine_select_invalid
+.testH5Sselect_copy_invalid
+.testH5Sselect_intersect_block_rank_end
Time: XXXX
-OK (16 tests)
+OK (30 tests)
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index 9376bda..15804f4 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -144,6 +144,14 @@ New Features
Java Library:
----------------
+ - Added new H5S functions.
+
+ H5Sselect_copy, H5Sselect_shape_same, H5Sselect_adjust,
+ H5Sselect_intersect_block, H5Sselect_project_intersection,
+ H5Scombine_hyperslab, H5Smodify_select, H5Scombine_select
+ wrapper functions added.
+
+ (ADB - 2020/10/27, HDFFV-10868)
Tools: