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| author | Allen Byrne <byrn@hdfgroup.org> | 2019-10-02 17:43:56 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2019-10-02 17:43:56 (GMT) |
| commit | e2c5f6dd2bed3a0fce3eed401a2762ef9033d816 (patch) | |
| tree | ab384216bc22be13026036745cb4197f38fd0111 | |
| parent | 322a347ac84d4c4a12c965802d87d162d6db99fd (diff) | |
| download | hdf5-e2c5f6dd2bed3a0fce3eed401a2762ef9033d816.zip hdf5-e2c5f6dd2bed3a0fce3eed401a2762ef9033d816.tar.gz hdf5-e2c5f6dd2bed3a0fce3eed401a2762ef9033d816.tar.bz2 | |
Whitespace and benign synchro changes
72 files changed, 2151 insertions, 1432 deletions
diff --git a/src/H5FSpkg.h b/src/H5FSpkg.h index a5896ee..c2654a7 100644 --- a/src/H5FSpkg.h +++ b/src/H5FSpkg.h @@ -215,10 +215,8 @@ H5FL_EXTERN(H5FS_t); /******************************/ /* Generic routines */ -H5_DLL herr_t H5FS__create_flush_depend(H5AC_info_t *parent_entry, - H5AC_info_t *child_entry); -H5_DLL herr_t H5FS__destroy_flush_depend(H5AC_info_t *parent_entry, - H5AC_info_t *child_entry); +H5_DLL herr_t H5FS__create_flush_depend(H5AC_info_t *parent_entry, H5AC_info_t *child_entry); +H5_DLL herr_t H5FS__destroy_flush_depend(H5AC_info_t *parent_entry, H5AC_info_t *child_entry); /* Free space manager header routines */ H5_DLL H5FS_t *H5FS__new(const H5F_t *f, uint16_t nclasses, diff --git a/src/H5Fpublic.h b/src/H5Fpublic.h index 8a475d1..14dbe70 100644 --- a/src/H5Fpublic.h +++ b/src/H5Fpublic.h @@ -47,13 +47,13 @@ * We're assuming that these constants are used rather early in the hdf5 * session. */ -#define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ -#define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ -#define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ -#define H5F_ACC_EXCL (H5CHECK H5OPEN 0x0004u) /*fail if file already exists*/ +#define H5F_ACC_RDONLY (H5CHECK H5OPEN 0x0000u) /*absence of rdwr => rd-only */ +#define H5F_ACC_RDWR (H5CHECK H5OPEN 0x0001u) /*open for read and write */ +#define H5F_ACC_TRUNC (H5CHECK H5OPEN 0x0002u) /*overwrite existing files */ +#define H5F_ACC_EXCL (H5CHECK H5OPEN 0x0004u) /*fail if file already exists*/ /* NOTE: 0x0008u was H5F_ACC_DEBUG, now deprecated */ -#define H5F_ACC_CREAT (H5CHECK H5OPEN 0x0010u) /*create non-existing files */ -#define H5F_ACC_SWMR_WRITE (H5CHECK 0x0020u) /*indicate that this file is +#define H5F_ACC_CREAT (H5CHECK H5OPEN 0x0010u) /*create non-existing files */ +#define H5F_ACC_SWMR_WRITE (H5CHECK 0x0020u) /*indicate that this file is * open for writing in a * single-writer/multi-reader (SWMR) * scenario. Note that the @@ -62,7 +62,7 @@ * with RDONLY access, and use * the special "SWMR_READ" access * flag. */ -#define H5F_ACC_SWMR_READ (H5CHECK 0x0040u) /*indicate that this file is +#define H5F_ACC_SWMR_READ (H5CHECK 0x0040u) /*indicate that this file is * open for reading in a * single-writer/multi-reader (SWMR) * scenario. Note that the @@ -73,15 +73,15 @@ /* Value passed to H5Pset_elink_acc_flags to cause flags to be taken from the * parent file. */ -#define H5F_ACC_DEFAULT (H5CHECK H5OPEN 0xffffu) /*ignore setting on lapl */ +#define H5F_ACC_DEFAULT (H5CHECK H5OPEN 0xffffu) /*ignore setting on lapl */ /* Flags for H5Fget_obj_count() & H5Fget_obj_ids() calls */ -#define H5F_OBJ_FILE (0x0001u) /* File objects */ -#define H5F_OBJ_DATASET (0x0002u) /* Dataset objects */ -#define H5F_OBJ_GROUP (0x0004u) /* Group objects */ +#define H5F_OBJ_FILE (0x0001u) /* File objects */ +#define H5F_OBJ_DATASET (0x0002u) /* Dataset objects */ +#define H5F_OBJ_GROUP (0x0004u) /* Group objects */ #define H5F_OBJ_DATATYPE (0x0008u) /* Named datatype objects */ #define H5F_OBJ_ATTR (0x0010u) /* Attribute objects */ -#define H5F_OBJ_ALL (H5F_OBJ_FILE|H5F_OBJ_DATASET|H5F_OBJ_GROUP|H5F_OBJ_DATATYPE|H5F_OBJ_ATTR) +#define H5F_OBJ_ALL (H5F_OBJ_FILE|H5F_OBJ_DATASET|H5F_OBJ_GROUP|H5F_OBJ_DATATYPE|H5F_OBJ_ATTR) #define H5F_OBJ_LOCAL (0x0020u) /* Restrict search to objects opened through current file ID */ /* (as opposed to objects opened through any file ID accessing this file) */ @@ -99,20 +99,20 @@ /* The difference between a single file and a set of mounted files */ typedef enum H5F_scope_t { - H5F_SCOPE_LOCAL = 0, /*specified file handle only */ - H5F_SCOPE_GLOBAL = 1 /*entire virtual file */ + H5F_SCOPE_LOCAL = 0, /*specified file handle only */ + H5F_SCOPE_GLOBAL = 1 /*entire virtual file */ } H5F_scope_t; /* Unlimited file size for H5Pset_external() */ -#define H5F_UNLIMITED ((hsize_t)(-1L)) +#define H5F_UNLIMITED ((hsize_t)(-1L)) /* How does file close behave? * H5F_CLOSE_DEFAULT - Use the degree pre-defined by underlining VFL * H5F_CLOSE_WEAK - file closes only after all opened objects are closed * H5F_CLOSE_SEMI - if no opened objects, file is close; otherwise, file - close fails + close fails * H5F_CLOSE_STRONG - if there are opened objects, close them first, then - close file + close file */ typedef enum H5F_close_degree_t { H5F_CLOSE_DEFAULT = 0, @@ -124,19 +124,19 @@ typedef enum H5F_close_degree_t { /* Current "global" information about file */ typedef struct H5F_info2_t { struct { - unsigned version; /* Superblock version # */ - hsize_t super_size; /* Superblock size */ - hsize_t super_ext_size; /* Superblock extension size */ + unsigned version; /* Superblock version # */ + hsize_t super_size; /* Superblock size */ + hsize_t super_ext_size; /* Superblock extension size */ } super; struct { - unsigned version; /* Version # of file free space management */ - hsize_t meta_size; /* Free space manager metadata size */ - hsize_t tot_space; /* Amount of free space in the file */ + unsigned version; /* Version # of file free space management */ + hsize_t meta_size; /* Free space manager metadata size */ + hsize_t tot_space; /* Amount of free space in the file */ } free; struct { - unsigned version; /* Version # of shared object header info */ - hsize_t hdr_size; /* Shared object header message header size */ - H5_ih_info_t msgs_info; /* Shared object header message index & heap size */ + unsigned version; /* Version # of shared object header info */ + hsize_t hdr_size; /* Shared object header message header size */ + H5_ih_info_t msgs_info; /* Shared object header message index & heap size */ } sohm; } H5F_info2_t; @@ -199,16 +199,16 @@ typedef enum H5F_fspace_strategy_t { typedef enum H5F_file_space_type_t { H5F_FILE_SPACE_DEFAULT = 0, /* Default (or current) free space strategy setting */ H5F_FILE_SPACE_ALL_PERSIST = 1, /* Persistent free space managers, aggregators, virtual file driver */ - H5F_FILE_SPACE_ALL = 2, /* Non-persistent free space managers, aggregators, virtual file driver */ - /* This is the library default */ + H5F_FILE_SPACE_ALL = 2, /* Non-persistent free space managers, aggregators, virtual file driver */ + /* This is the library default */ H5F_FILE_SPACE_AGGR_VFD = 3, /* Aggregators, Virtual file driver */ - H5F_FILE_SPACE_VFD = 4, /* Virtual file driver */ - H5F_FILE_SPACE_NTYPES /* must be last */ + H5F_FILE_SPACE_VFD = 4, /* Virtual file driver */ + H5F_FILE_SPACE_NTYPES /* must be last */ } H5F_file_space_type_t; /* Data structure to report the collection of read retries for metadata items with checksum */ /* Used by public routine H5Fget_metadata_read_retry_info() */ -#define H5F_NUM_METADATA_READ_RETRY_TYPES 21 +#define H5F_NUM_METADATA_READ_RETRY_TYPES 21 typedef struct H5F_retry_info_t { unsigned nbins; uint32_t *retries[H5F_NUM_METADATA_READ_RETRY_TYPES]; @@ -217,7 +217,9 @@ typedef struct H5F_retry_info_t { /* Callback for H5Pset_object_flush_cb() in a file access property list */ typedef herr_t (*H5F_flush_cb_t)(hid_t object_id, void *udata); - +/*********************/ +/* Public Prototypes */ +/*********************/ #ifdef __cplusplus extern "C" { #endif @@ -225,9 +227,9 @@ extern "C" { /* Functions in H5F.c */ H5_DLL htri_t H5Fis_hdf5(const char *filename); H5_DLL hid_t H5Fcreate(const char *filename, unsigned flags, - hid_t create_plist, hid_t access_plist); + hid_t create_plist, hid_t access_plist); H5_DLL hid_t H5Fopen(const char *filename, unsigned flags, - hid_t access_plist); + hid_t access_plist); H5_DLL hid_t H5Freopen(hid_t file_id); H5_DLL herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); H5_DLL herr_t H5Fclose(hid_t file_id); @@ -245,9 +247,9 @@ H5_DLL herr_t H5Fget_eoa(hid_t file_id, haddr_t *eoa); H5_DLL herr_t H5Fincrement_filesize(hid_t file_id, hsize_t increment); H5_DLL ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len); H5_DLL herr_t H5Fget_mdc_config(hid_t file_id, - H5AC_cache_config_t * config_ptr); + H5AC_cache_config_t * config_ptr); H5_DLL herr_t H5Fset_mdc_config(hid_t file_id, - H5AC_cache_config_t * config_ptr); + H5AC_cache_config_t * config_ptr); H5_DLL herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr); H5_DLL herr_t H5Fget_mdc_size(hid_t file_id, size_t * max_size_ptr, @@ -288,16 +290,16 @@ H5_DLL herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag); #ifndef H5_NO_DEPRECATED_SYMBOLS /* Macros */ -#define H5F_ACC_DEBUG (H5CHECK H5OPEN 0x0000u) /*print debug info (deprecated)*/ +#define H5F_ACC_DEBUG (H5CHECK H5OPEN 0x0000u) /*print debug info (deprecated)*/ /* Typedefs */ /* Current "global" information about file */ typedef struct H5F_info1_t { - hsize_t super_ext_size; /* Superblock extension size */ + hsize_t super_ext_size; /* Superblock extension size */ struct { - hsize_t hdr_size; /* Shared object header message header size */ - H5_ih_info_t msgs_info; /* Shared object header message index & heap size */ + hsize_t hdr_size; /* Shared object header message header size */ + H5_ih_info_t msgs_info; /* Shared object header message index & heap size */ } sohm; } H5F_info1_t; diff --git a/src/H5Fsfile.c b/src/H5Fsfile.c index e0c830b..a066790 100644 --- a/src/H5Fsfile.c +++ b/src/H5Fsfile.c @@ -40,11 +40,11 @@ H5F_sfile_node_t *H5F_sfile_head_g = NULL; /*------------------------------------------------------------------------- - * Function: H5F_sfile_assert_num + * Function: H5F_sfile_assert_num * - * Purpose: Sanity checking that shared file list is empty + * Purpose: Sanity checking that shared file list is empty * - * Return: none (void) + * Return: void * * Programmer: Quincey Koziol * Monday, July 25, 2005 @@ -86,21 +86,19 @@ H5F_sfile_assert_num(unsigned n) /*------------------------------------------------------------------------- * Function: H5F_sfile_add * - * Purpose: Add a "shared" file struct to the list of open files + * Purpose: Add a "shared" file struct to the list of open files * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Monday, July 18, 2005 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5F_sfile_add(H5F_file_t *shared) { - H5F_sfile_node_t *new_shared; /* New shared file node */ + H5F_sfile_node_t *new_shared; /* New shared file node */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -110,7 +108,7 @@ H5F_sfile_add(H5F_file_t *shared) /* Allocate new shared file node */ if (NULL == (new_shared = H5FL_CALLOC(H5F_sfile_node_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Set shared file value */ new_shared->shared = shared; @@ -127,16 +125,14 @@ done: /*------------------------------------------------------------------------- * Function: H5F_sfile_search * - * Purpose: Search for a "shared" file with low-level file info that + * Purpose: Search for a "shared" file with low-level file info that * matches * - * Return: Non-NULL on success / NULL on failure + * Return: Non-NULL on success / NULL on failure * * Programmer: Quincey Koziol * Monday, July 18, 2005 * - * Modifications: - * *------------------------------------------------------------------------- */ H5F_file_t * @@ -154,7 +150,7 @@ H5F_sfile_search(H5FD_t *lf) curr = H5F_sfile_head_g; while(curr) { /* Check for match */ - if(0==H5FD_cmp(curr->shared->lf, lf)) + if(0 == H5FD_cmp(curr->shared->lf, lf)) HGOTO_DONE(curr->shared) /* Advance to next shared file node */ @@ -169,15 +165,13 @@ done: /*------------------------------------------------------------------------- * Function: H5F_sfile_remove * - * Purpose: Remove a "shared" file struct from the list of open files + * Purpose: Remove a "shared" file struct from the list of open files * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Monday, July 18, 2005 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -203,7 +197,7 @@ H5F_sfile_remove(H5F_file_t *shared) /* Indicate error if the node wasn't found */ if(curr == NULL) - HGOTO_ERROR(H5E_FILE, H5E_NOTFOUND, FAIL, "can't find shared file info") + HGOTO_ERROR(H5E_FILE, H5E_NOTFOUND, FAIL, "can't find shared file info") /* Remove node found from list */ if(last != NULL) diff --git a/src/H5Ftest.c b/src/H5Ftest.c index bdecad2..4091579 100644 --- a/src/H5Ftest.c +++ b/src/H5Ftest.c @@ -26,24 +26,24 @@ /* Module Setup */ /****************/ -#include "H5Fmodule.h" /* This source code file is part of the H5F module */ -#define H5F_TESTING /*suppress warning about H5F testing funcs*/ -#define H5G_FRIEND /*suppress error about including H5Gpkg */ -#define H5G_TESTING /*suppress warning about H5G testing funcs*/ -#define H5SM_FRIEND /*suppress error about including H5SMpkg */ -#define H5SM_TESTING /*suppress warning about H5SM testing funcs*/ +#include "H5Fmodule.h" /* This source code file is part of the H5F module */ +#define H5F_TESTING /* Suppress warning about H5F testing funcs */ +#define H5G_FRIEND /* Suppress error about including H5Gpkg.h */ +#define H5G_TESTING /* Suppress warning about H5G testing funcs */ +#define H5SM_FRIEND /* Suppress error about including H5SMpkg.h */ +#define H5SM_TESTING /* Suppress warning about H5SM testing funcs */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fpkg.h" /* File access */ -#include "H5Gpkg.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5SMpkg.h" /* Shared object header messages */ +#include "H5private.h" /* Generic Functions */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5Gpkg.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5SMpkg.h" /* Shared object header messages */ /****************/ @@ -86,27 +86,25 @@ * * Purpose: Retrieve the number of shared messages of a given type in a file * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * Jan 3, 2007 + * Programmer: Quincey Koziol + * Jan 3, 2007 * *------------------------------------------------------------------------- */ herr_t -H5F_get_sohm_mesg_count_test(hid_t file_id, unsigned type_id, - size_t *mesg_count) +H5F_get_sohm_mesg_count_test(hid_t file_id, unsigned type_id, size_t *mesg_count) { - H5F_t *file; /* File info */ - hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ - herr_t ret_value = SUCCEED; /* Return value */ + H5F_t *file; /* File info */ + hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Check arguments */ if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Push API context */ if(H5CX_push() < 0) @@ -133,8 +131,7 @@ done: * group's object header, and check that the addresses are * valid. * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Neil Fortner * Mar 31, 2009 @@ -144,15 +141,15 @@ done: herr_t H5F_check_cached_stab_test(hid_t file_id) { - H5F_t *file; /* File info */ - hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ - herr_t ret_value = SUCCEED; /* Return value */ + H5F_t *file; /* File info */ + hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Check arguments */ if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Push API context */ if(H5CX_push() < 0) @@ -176,8 +173,7 @@ done: * * Purpose: Retrieve the maximum address for a file * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Jun 10, 2009 @@ -187,14 +183,14 @@ done: herr_t H5F_get_maxaddr_test(hid_t file_id, haddr_t *maxaddr) { - H5F_t *file; /* File info */ - herr_t ret_value = SUCCEED; /* Return value */ + H5F_t *file; /* File info */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Check arguments */ if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file") /* Retrieve maxaddr for file */ *maxaddr = file->shared->maxaddr; @@ -208,10 +204,9 @@ done: * Function: H5F_get_sbe_addr_test * * Purpose: Retrieve the address of a superblock extension's object header - * for a file + * for a file * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Jul 10, 2016 @@ -221,8 +216,8 @@ done: herr_t H5F_get_sbe_addr_test(hid_t file_id, haddr_t *sbe_addr) { - H5F_t *file; /* File info */ - herr_t ret_value = SUCCEED; /* Return value */ + H5F_t *file; /* File info */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -14,14 +14,12 @@ /*------------------------------------------------------------------------- * * Created: H5G.c - * Jul 18 1997 - * Robb Matzke <matzke@llnl.gov> * * Purpose: Symbol table functions. The functions that begin with - * `H5G_stab_' don't understand the naming system; they operate + * 'H5G_stab_' don't understand the naming system; they operate * on a single symbol table at a time. * - * The functions that begin with `H5G_node_' operate on the leaf + * The functions that begin with 'H5G_node_' operate on the leaf * nodes of a symbol table B-tree. They should be defined in * the H5Gnode.c file. * @@ -42,11 +40,11 @@ * +--------------+----------- +--------------------------------+ * | Location ID | Name | Meaning | * +--------------+------------+--------------------------------+ - * | File ID | "/foo/bar" | Find `foo' within `bar' within | + * | File ID | "/foo/bar" | Find 'foo' within 'bar' within | * | | | the root group of the specified| * | | | file. | * +--------------+------------+--------------------------------+ - * | File ID | "foo/bar" | Find `foo' within `bar' within | + * | File ID | "foo/bar" | Find 'foo' within 'bar' within | * | | | the root group of the specified| * | | | file. | * +--------------+------------+--------------------------------+ @@ -56,11 +54,11 @@ * | File ID | "." | The root group of the specified| * | | | the specified file. | * +--------------+------------+--------------------------------+ - * | Group ID | "/foo/bar" | Find `foo' within `bar' within | + * | Group ID | "/foo/bar" | Find 'foo' within 'bar' within | * | | | the root group of the file | * | | | containing the specified group.| * +--------------+------------+--------------------------------+ - * | Group ID | "foo/bar" | File `foo' within `bar' within | + * | Group ID | "foo/bar" | File 'foo' within 'bar' within | * | | | the specified group. | * +--------------+------------+--------------------------------+ * | Group ID | "/" | The root group of the file | @@ -83,13 +81,13 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Gpkg.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Pprivate.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Gpkg.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Pprivate.h" /* Property lists */ /****************/ @@ -131,10 +129,10 @@ hbool_t H5_PKG_INIT_VAR = FALSE; /* Group ID class */ static const H5I_class_t H5I_GROUP_CLS[1] = {{ - H5I_GROUP, /* ID class value */ - 0, /* Class flags */ - 0, /* # of reserved IDs for class */ - (H5I_free_t)H5G__close_cb /* Callback routine for closing objects of this class */ + H5I_GROUP, /* ID class value */ + 0, /* Class flags */ + 0, /* # of reserved IDs for class */ + (H5I_free_t)H5G__close_cb /* Callback routine for closing objects of this class */ }}; /* Flag indicating "top" of interface has been initialized */ @@ -258,9 +256,9 @@ H5G_term_package(void) /*------------------------------------------------------------------------- - * Function: H5Gcreate2 + * Function: H5Gcreate2 * - * Purpose: Creates a new group relative to LOC_ID, giving it the + * Purpose: Creates a new group relative to LOC_ID, giving it the * specified creation property list GCPL_ID and access * property list GAPL_ID. The link to the new group is * created with the LCPL_ID. @@ -272,14 +270,11 @@ H5G_term_package(void) * hid_t gcpl_id; IN: Property list for group creation * hid_t gapl_id; IN: Property list for group access * - * Return: Success: The object ID of a new, empty group open for - * writing. Call H5Gclose() when finished with - * the group. + * Return: Success: The object ID of a new, empty group open for + * writing. Call H5Gclose() when finished with + * the group. * - * Failure: H5I_INVALID_HID - * - * Programmer: Quincey Koziol - * April 5, 2007 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -334,9 +329,9 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gcreate_anon + * Function: H5Gcreate_anon * - * Purpose: Creates a new group relative to LOC_ID, giving it the + * Purpose: Creates a new group relative to LOC_ID, giving it the * specified creation property list GCPL_ID and access * property list GAPL_ID. * @@ -352,19 +347,16 @@ done: * hid_t gcpl_id; IN: Property list for group creation * hid_t gapl_id; IN: Property list for group access * - * Example: To create missing groups "A" and "B01" along the given path "/A/B01/grp" + * Example: To create missing groups "A" and "B01" along the given path "/A/B01/grp" * hid_t create_id = H5Pcreate(H5P_GROUP_CREATE); * int status = H5Pset_create_intermediate_group(create_id, TRUE); * hid_t gid = H5Gcreate_anon(file_id, "/A/B01/grp", create_id, H5P_DEFAULT); * - * Return: Success: The object ID of a new, empty group open for - * writing. Call H5Gclose() when finished with - * the group. - * - * Failure: H5I_INVALID_HID + * Return: Success: The object ID of a new, empty group open for + * writing. Call H5Gclose() when finished with + * the group. * - * Programmer: Peter Cao - * May 08, 2005 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -429,19 +421,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gopen2 + * Function: H5Gopen2 * - * Purpose: Opens an existing group for modification. When finished, - * call H5Gclose() to close it and release resources. + * Purpose: Opens an existing group for modification. When finished, + * call H5Gclose() to close it and release resources. * * This function allows the user the pass in a Group Access * Property List, which H5Gopen1() does not. * - * Return: Success: Object ID of the group. - * Failure: H5I_INVALID_HID + * Return: Success: Object ID of the group * - * Programmer: James Laird - * Thursday, July 27, 2006 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -483,18 +473,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gget_create_plist + * Function: H5Gget_create_plist * - * Purpose: Returns a copy of the group creation property list. + * Purpose: Returns a copy of the group creation property list. * - * Return: Success: ID for a copy of the group creation - * property list. The property list ID should be - * released by calling H5Pclose(). + * Return: Success: ID for a copy of the group creation + * property list. The property list ID should be + * released by calling H5Pclose(). * - * Failure: H5I_INVALID_HID - * - * Programmer: Quincey Koziol - * Tuesday, October 25, 2005 + * Failure: H5I_INVALID_HID * *------------------------------------------------------------------------- */ @@ -521,15 +508,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gget_info + * Function: H5Gget_info * - * Purpose: Retrieve information about a group. + * Purpose: Retrieve information about a group. * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * November 27 2006 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -564,15 +547,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gget_info_by_name + * Function: H5Gget_info_by_name * - * Purpose: Retrieve information about a group. + * Purpose: Retrieve information about a group, where the group is + * identified by name instead of ID. * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * November 27 2006 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -608,16 +588,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gget_info_by_idx + * Function: H5Gget_info_by_idx * - * Purpose: Retrieve information about a group, according to the order + * Purpose: Retrieve information about a group, according to the order * of an index. * - * Return: Success: Non-negative - * Failure: Negative - * - * Programmer: Quincey Koziol - * November 27 2006 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -658,15 +634,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5Gclose + * Function: H5Gclose * - * Purpose: Closes the specified group. The group ID will no longer be - * valid for accessing the group. + * Purpose: Closes the specified group. The group ID will no longer be + * valid for accessing the group. * - * Return: Non-negative on success/Negative on failure - * - * Programmer: Robb Matzke - * Wednesday, December 31, 1997 + * Return: SUCCEED/FAIL * *------------------------------------------------------------------------- */ @@ -679,11 +652,10 @@ H5Gclose(hid_t group_id) H5TRACE1("e", "i", group_id); /* Check args */ - if(NULL == H5I_object_verify(group_id,H5I_GROUP)) + if(NULL == H5I_object_verify(group_id, H5I_GROUP)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a group") - /* - * Decrement the counter on the group atom. It will be freed if the count + /* Decrement the counter on the group atom. It will be freed if the count * reaches zero. */ if(H5I_dec_app_ref(group_id) < 0) diff --git a/src/H5Gcompact.c b/src/H5Gcompact.c index aae5496..6d66274 100644 --- a/src/H5Gcompact.c +++ b/src/H5Gcompact.c @@ -68,10 +68,10 @@ static herr_t H5G__compact_build_table(const H5O_loc_t *oloc, /*------------------------------------------------------------------------- * Function: H5G_compact_build_table_cb * - * Purpose: Callback routine for searching 'link' messages for a particular + * Purpose: Callback routine for searching 'link' messages for a particular * name. * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu @@ -434,10 +434,10 @@ done: /*------------------------------------------------------------------------- * Function: H5G_compact_lookup_cb * - * Purpose: Callback routine for searching 'link' messages for a particular + * Purpose: Callback routine for searching 'link' messages for a particular * name & gettting object location for it * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * koziol@ncsa.uiuc.edu diff --git a/src/H5Gdense.c b/src/H5Gdense.c index 326561a..d2bcad1 100644 --- a/src/H5Gdense.c +++ b/src/H5Gdense.c @@ -416,7 +416,7 @@ HDfprintf(stderr, "%s: HDstrlen(lnk->name) = %Zu, link_size = %Zu\n", FUNC, HDst /* Create serialized form of link */ if(H5O_msg_encode(f, H5O_LINK_ID, FALSE, (unsigned char *)link_ptr, lnk) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTENCODE, FAIL, "can't encode link") + HGOTO_ERROR(H5E_SYM, H5E_CANTENCODE, FAIL, "can't encode link") /* Open the fractal heap */ if(NULL == (fheap = H5HF_open(f, linfo->fheap_addr))) @@ -966,8 +966,7 @@ done: */ herr_t H5G__dense_iterate(H5F_t *f, const H5O_linfo_t *linfo, H5_index_t idx_type, - H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk, H5G_lib_iterate_t op, - void *op_data) + H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk, H5G_lib_iterate_t op, void *op_data) { H5HF_t *fheap = NULL; /* Fractal heap handle */ H5G_link_table_t ltable = {0, NULL}; /* Table of links */ diff --git a/src/H5Gint.c b/src/H5Gint.c index 8fd7514..c46681b 100644 --- a/src/H5Gint.c +++ b/src/H5Gint.c @@ -32,13 +32,13 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FOprivate.h" /* File objects */ -#include "H5Gpkg.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Lprivate.h" /* Links */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FOprivate.h" /* File objects */ +#include "H5Gpkg.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Lprivate.h" /* Links */ +#include "H5MMprivate.h" /* Memory management */ /****************/ @@ -805,12 +805,11 @@ done: /*------------------------------------------------------------------------- - * Function: H5G_iterate + * Function: H5G_iterate * * Purpose: Private function for iterating over links in a group * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Oct 3, 2005 @@ -823,10 +822,10 @@ H5G_iterate(hid_t loc_id, const char *group_name, const H5G_link_iterate_t *lnk_op, void *op_data) { H5G_loc_t loc; /* Location of parent for group */ - hid_t gid = -1; /* ID of group to iterate over */ - H5G_t *grp = NULL; /* Pointer to group data structure to iterate over */ - H5G_iter_appcall_ud_t udata; /* User data for callback */ - herr_t ret_value = FAIL; /* Return value */ + hid_t gid = H5I_INVALID_HID; /* ID of group to iterate over */ + H5G_t *grp = NULL; /* Pointer to group data structure to iterate over */ + H5G_iter_appcall_ud_t udata; /* User data for callback */ + herr_t ret_value = FAIL; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -835,8 +834,7 @@ H5G_iterate(hid_t loc_id, const char *group_name, HDassert(last_lnk); HDassert(lnk_op && lnk_op->op_func.op_new); - /* - * Open the group on which to operate. We also create a group ID which + /* Open the group on which to operate. We also create a group ID which * we can pass to the application-defined operator. */ if(H5G_loc(loc_id, &loc) < 0) @@ -860,7 +858,7 @@ done: if(gid > 0) { if(H5I_dec_app_ref(gid) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to close group") - } /* end if */ + } else if(grp && H5G_close(grp) < 0) HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group") @@ -1054,9 +1052,9 @@ done: /*------------------------------------------------------------------------- - * Function: H5G_visit + * Function: H5G_visit * - * Purpose: Recursively visit all the links in a group and all + * Purpose: Recursively visit all the links in a group and all * the groups that are linked to from that group. Links within * each group are visited according to the order within the * specified index (unless the specified index does not exist for @@ -1068,18 +1066,13 @@ done: * callback with more than one link that points to a particular * _object_. * - * Return: Success: The return value of the first operator that - * returns non-zero, or zero if all members were - * processed with no operator returning non-zero. - * - * Failure: Negative if something goes wrong within the - * library, or the negative value returned by one - * of the operators. + * Return: Success: The return value of the first operator that + * returns non-zero, or zero if all members were + * processed with no operator returning non-zero. * - * - * - * Programmer: Quincey Koziol - * November 4 2007 + * Failure: Negative if something goes wrong within the + * library, or the negative value returned by one + * of the operators. * *------------------------------------------------------------------------- */ @@ -1090,7 +1083,7 @@ H5G_visit(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5G_iter_visit_ud_t udata; /* User data for callback */ H5O_linfo_t linfo; /* Link info message */ htri_t linfo_exists; /* Whether the link info message exists */ - hid_t gid = (-1); /* Group ID */ + hid_t gid = H5I_INVALID_HID; /* Group ID */ H5G_t *grp = NULL; /* Group opened */ H5G_loc_t loc; /* Location of group passed in */ H5G_loc_t start_loc; /* Location of starting group */ @@ -1193,7 +1186,7 @@ done: if(gid > 0) { if(H5I_dec_app_ref(gid) < 0) HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to close group") - } /* end if */ + } else if(grp && H5G_close(grp) < 0) HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group") @@ -1260,7 +1253,7 @@ H5G_get_create_plist(const H5G_t *grp) /* Check for the group having a link info message */ if((linfo_exists = H5G__obj_get_linfo(&(grp->oloc), &linfo)) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, H5I_INVALID_HID, "unable to read object header") + HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, H5I_INVALID_HID, "unable to read object header") if(linfo_exists) { /* Set the link info for the property list */ if(H5P_set(new_plist, H5G_CRT_LINK_INFO_NAME, &linfo) < 0) diff --git a/src/H5Glink.c b/src/H5Glink.c index 509e511..1f4edd5 100644 --- a/src/H5Glink.c +++ b/src/H5Glink.c @@ -402,15 +402,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5G__link_sort_table + * Function: H5G__link_sort_table * * Purpose: Sort table containing a list of links for a group * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * Nov 20, 2006 + * Programmer: Quincey Koziol + * Nov 20, 2006 * *------------------------------------------------------------------------- */ @@ -568,7 +567,7 @@ H5G__link_name_replace(H5F_t *file, H5RS_str_t *grp_full_path_r, const H5O_link_ obj_path_r = H5G_build_fullpath_refstr_str(grp_full_path_r, lnk->name); if(H5G_name_replace(lnk, H5G_NAME_DELETE, file, obj_path_r, NULL, NULL) < 0) HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to replace name") - } /* end if */ + } done: if(obj_path_r) diff --git a/src/H5Gpublic.h b/src/H5Gpublic.h index ab6f200..170b74d 100644 --- a/src/H5Gpublic.h +++ b/src/H5Gpublic.h @@ -37,10 +37,6 @@ /* Public Macros */ /*****************/ -#ifdef __cplusplus -extern "C" { -#endif - /*******************/ /* Public Typedefs */ /*******************/ @@ -62,6 +58,7 @@ typedef struct H5G_info_t { hbool_t mounted; /* Whether group has a file mounted on it */ } H5G_info_t; + /********************/ /* Public Variables */ /********************/ @@ -70,6 +67,10 @@ typedef struct H5G_info_t { /*********************/ /* Public Prototypes */ /*********************/ +#ifdef __cplusplus +extern "C" { +#endif + H5_DLL hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id); H5_DLL hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id); diff --git a/src/H5Gstab.c b/src/H5Gstab.c index 64c4054..8e0fec3 100644 --- a/src/H5Gstab.c +++ b/src/H5Gstab.c @@ -225,14 +225,14 @@ H5G__stab_create(H5O_loc_t *grp_oloc, const H5O_ginfo_t *ginfo, H5O_stab_t *stab /* Go create the B-tree & local heap */ if(H5G__stab_create_components(grp_oloc->file, stab, size_hint) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create symbol table components") + HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create symbol table components") /* * Insert the symbol table message into the object header and the symbol * table entry. */ if(H5O_msg_create(grp_oloc, H5O_STAB_ID, 0, H5O_UPDATE_TIME, stab) < 0) - HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message") + HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message") done: FUNC_LEAVE_NOAPI_TAG(ret_value) @@ -534,7 +534,7 @@ H5G__stab_iterate(const H5O_loc_t *oloc, H5_iter_order_t order, /* Get the B-tree info */ if(NULL == H5O_msg_read(oloc, H5O_STAB_ID, &stab)) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") /* Pin the heap down in memory */ if(NULL == (heap = H5HL_protect(oloc->file, stab.heap_addr, H5AC__READ_ONLY_FLAG))) @@ -626,7 +626,7 @@ H5G__stab_count(const H5O_loc_t *oloc, hsize_t *num_objs) /* Get the B-tree info */ if(NULL == H5O_msg_read(oloc, H5O_STAB_ID, &stab)) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") /* Iterate over the group members */ if(H5B_iterate(oloc->file, H5B_SNODE, stab.btree_addr, H5G__node_sumup, num_objs) < 0) @@ -757,7 +757,7 @@ H5G__stab_get_name_by_idx(const H5O_loc_t *oloc, H5_iter_order_t order, hsize_t /* Get the B-tree & local heap info */ if(NULL == H5O_msg_read(oloc, H5O_STAB_ID, &stab)) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") /* Pin the heap down in memory */ if(NULL == (heap = H5HL_protect(oloc->file, stab.heap_addr, H5AC__READ_ONLY_FLAG))) @@ -785,11 +785,11 @@ H5G__stab_get_name_by_idx(const H5O_loc_t *oloc, H5_iter_order_t order, hsize_t /* Iterate over the group members */ if(H5B_iterate(oloc->file, H5B_SNODE, stab.btree_addr, H5G__node_by_idx, &udata) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "iteration operator failed") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "iteration operator failed") /* If we don't know the name now, we almost certainly went out of bounds */ if(udata.name == NULL) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "index out of bound") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "index out of bound") /* Get the length of the name */ ret_value = (ssize_t)HDstrlen(udata.name); @@ -979,7 +979,7 @@ H5G__stab_lookup_by_idx(const H5O_loc_t *grp_oloc, H5_iter_order_t order, hsize_ /* Get the B-tree & local heap info */ if(NULL == H5O_msg_read(grp_oloc, H5O_STAB_ID, &stab)) - HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") + HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "unable to determine local heap address") /* Pin the heap down in memory */ if(NULL == (heap = H5HL_protect(grp_oloc->file, stab.heap_addr, H5AC__READ_ONLY_FLAG))) @@ -1007,11 +1007,11 @@ H5G__stab_lookup_by_idx(const H5O_loc_t *grp_oloc, H5_iter_order_t order, hsize_ /* Iterate over the group members */ if(H5B_iterate(grp_oloc->file, H5B_SNODE, stab.btree_addr, H5G__node_by_idx, &udata) < 0) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "iteration operator failed") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "iteration operator failed") /* If we didn't find the link, we almost certainly went out of bounds */ if(!udata.found) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "index out of bound") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "index out of bound") done: /* Release resources */ diff --git a/src/H5HFdbg.c b/src/H5HFdbg.c index 50b77f5..22de0c4 100644 --- a/src/H5HFdbg.c +++ b/src/H5HFdbg.c @@ -13,11 +13,11 @@ /*------------------------------------------------------------------------- * - * Created: H5HFdbg.c - * Feb 24 2006 - * Quincey Koziol <koziol@ncsa.uiuc.edu> + * Created: H5HFdbg.c + * Feb 24 2006 + * Quincey Koziol <koziol@ncsa.uiuc.edu> * - * Purpose: Dump debugging information about a fractal heap + * Purpose: Dump debugging information about a fractal heap * *------------------------------------------------------------------------- */ @@ -32,12 +32,12 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5HFpkg.h" /* Fractal heaps */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5VMprivate.h" /* Vectors and arrays */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5HFpkg.h" /* Fractal heaps */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5VMprivate.h" /* Vectors and arrays */ /****************/ /* Local Macros */ @@ -96,17 +96,17 @@ static herr_t H5HF_dtable_debug(const H5HF_dtable_t *dtable, FILE *stream, /* Local Variables */ /*******************/ - + /*------------------------------------------------------------------------- - * Function: H5HF_id_print + * Function: H5HF_id_print * - * Purpose: Prints a fractal heap ID. + * Purpose: Prints a fractal heap ID. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 20 2015 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 20 2015 * *------------------------------------------------------------------------- */ @@ -163,24 +163,24 @@ HGOTO_ERROR(H5E_HEAP, H5E_UNSUPPORTED, FAIL, "heap ID type not supported yet") /* Display the heap ID */ HDfprintf(stream, "%*s%-*s (%c, %Hu, %Zu)\n", indent, "", fwidth, - "Heap ID info: (type, offset, length)", + "Heap ID info: (type, offset, length)", id_type, obj_off, obj_len); done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_id_print() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_dtable_debug + * Function: H5HF_dtable_debug * - * Purpose: Prints debugging info about a doubling table + * Purpose: Prints debugging info about a doubling table * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Feb 28 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * Feb 28 2006 * *------------------------------------------------------------------------- */ @@ -202,57 +202,57 @@ H5HF_dtable_debug(const H5HF_dtable_t *dtable, FILE *stream, int indent, int fwi */ /* Creation parameter values */ HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Doubling table width:", - dtable->cparam.width); + "Doubling table width:", + dtable->cparam.width); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Starting block size:", - dtable->cparam.start_block_size); + "Starting block size:", + dtable->cparam.start_block_size); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Max. direct block size:", - dtable->cparam.max_direct_size); + "Max. direct block size:", + dtable->cparam.max_direct_size); HDfprintf(stream, "%*s%-*s %u (bits)\n", indent, "", fwidth, - "Max. index size:", - dtable->cparam.max_index); + "Max. index size:", + dtable->cparam.max_index); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Starting # of rows in root indirect block:", - dtable->cparam.start_root_rows); + "Starting # of rows in root indirect block:", + dtable->cparam.start_root_rows); /* Run-time varying parameter values */ HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Table's root address:", - dtable->table_addr); + "Table's root address:", + dtable->table_addr); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Current # of rows in root indirect block:", - dtable->curr_root_rows); + "Current # of rows in root indirect block:", + dtable->curr_root_rows); /* Computed values */ HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Max. # of rows in root indirect block:", - dtable->max_root_rows); + "Max. # of rows in root indirect block:", + dtable->max_root_rows); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Max. # of direct rows in any indirect block:", - dtable->max_direct_rows); + "Max. # of direct rows in any indirect block:", + dtable->max_direct_rows); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "# of bits for IDs in first row:", - dtable->first_row_bits); + "# of bits for IDs in first row:", + dtable->first_row_bits); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "# of IDs in first row:", - dtable->num_id_first_row); + "# of IDs in first row:", + dtable->num_id_first_row); FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5HF_dtable_debug() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_hdr_print + * Function: H5HF_hdr_print * - * Purpose: Prints info about a fractal heap header. + * Purpose: Prints info about a fractal heap header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Feb 23 2012 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Feb 23 2012 * *------------------------------------------------------------------------- */ @@ -276,56 +276,56 @@ H5HF_hdr_print(const H5HF_hdr_t *hdr, hbool_t dump_internal, FILE *stream, int i * Print the values. */ HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth, - "Heap is:", - hdr->man_dtable.curr_root_rows > 0 ? "Indirect" : "Direct"); + "Heap is:", + hdr->man_dtable.curr_root_rows > 0 ? "Indirect" : "Direct"); HDfprintf(stream, "%*s%-*s %t\n", indent, "", fwidth, - "Objects stored in 'debugging' format:", - hdr->debug_objs); + "Objects stored in 'debugging' format:", + hdr->debug_objs); HDfprintf(stream, "%*s%-*s %t\n", indent, "", fwidth, - "'Write once' flag:", - hdr->write_once); + "'Write once' flag:", + hdr->write_once); HDfprintf(stream, "%*s%-*s %t\n", indent, "", fwidth, - "'Huge' object IDs have wrapped:", - hdr->huge_ids_wrapped); + "'Huge' object IDs have wrapped:", + hdr->huge_ids_wrapped); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Free space in managed blocks:", - hdr->total_man_free); + "Free space in managed blocks:", + hdr->total_man_free); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Managed space data block size:", - hdr->man_size); + "Managed space data block size:", + hdr->man_size); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Total managed space allocated:", - hdr->man_alloc_size); + "Total managed space allocated:", + hdr->man_alloc_size); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Offset of managed space iterator:", - hdr->man_iter_off); + "Offset of managed space iterator:", + hdr->man_iter_off); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of managed objects in heap:", - hdr->man_nobjs); + "Number of managed objects in heap:", + hdr->man_nobjs); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of free space manager for managed blocks:", - hdr->fs_addr); + "Address of free space manager for managed blocks:", + hdr->fs_addr); HDfprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth, - "Max. size of managed object:", - (unsigned long)hdr->max_man_size); + "Max. size of managed object:", + (unsigned long)hdr->max_man_size); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "'Huge' object space used:", - hdr->huge_size); + "'Huge' object space used:", + hdr->huge_size); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of 'huge' objects in heap:", - hdr->huge_nobjs); + "Number of 'huge' objects in heap:", + hdr->huge_nobjs); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "ID of next 'huge' object:", - hdr->huge_next_id); + "ID of next 'huge' object:", + hdr->huge_next_id); HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of v2 B-tree for 'huge' objects:", - hdr->huge_bt2_addr); + "Address of v2 B-tree for 'huge' objects:", + hdr->huge_bt2_addr); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "'Tiny' object space used:", - hdr->tiny_size); + "'Tiny' object space used:", + hdr->tiny_size); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Number of 'tiny' objects in heap:", - hdr->tiny_nobjs); + "Number of 'tiny' objects in heap:", + hdr->tiny_nobjs); HDfprintf(stream, "%*sManaged Objects Doubling-Table Info...\n", indent, ""); H5HF_dtable_debug(&hdr->man_dtable, stream, indent + 3, MAX(0, fwidth - 3)); @@ -362,24 +362,24 @@ H5HF_hdr_print(const H5HF_hdr_t *hdr, hbool_t dump_internal, FILE *stream, int i FUNC_LEAVE_NOAPI_VOID } /* end H5HF_hdr_print() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_hdr_debug + * Function: H5HF_hdr_debug * - * Purpose: Prints debugging info about a fractal heap header. + * Purpose: Prints debugging info about a fractal heap header. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Feb 24 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * Feb 24 2006 * *------------------------------------------------------------------------- */ herr_t H5HF_hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth) { - H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ + H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -395,7 +395,7 @@ H5HF_hdr_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth) /* Load the fractal heap header */ if(NULL == (hdr = H5HF__hdr_protect(f, addr, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") + HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") /* Print the information about the heap's header */ H5HF_hdr_print(hdr, FALSE, stream, indent, fwidth); @@ -407,17 +407,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_hdr_debug() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_dblock_debug_cb + * Function: H5HF_dblock_debug_cb * - * Purpose: Detect free space within a direct block + * Purpose: Detect free space within a direct block * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * May 13 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * May 13 2006 * *------------------------------------------------------------------------- */ @@ -468,9 +468,9 @@ H5HF_dblock_debug_cb(H5FS_section_info_t *_sect, void *_udata) len = end - start; HDsnprintf(temp_str, sizeof(temp_str), "Section #%u:", (unsigned)udata->sect_count); - HDfprintf(udata->stream, "%*s%-*s %8Zu, %8Zu\n", udata->indent + 3, "", MAX(0, udata->fwidth - 9), - temp_str, - start, len); + HDfprintf(udata->stream, "%*s%-*s %8Zu, %8Zu\n", udata->indent + 3, "", MAX(0, udata->fwidth - 9), + temp_str, + start, len); udata->sect_count++; /* Mark this node's free space & check for overlaps w/other sections */ @@ -491,17 +491,17 @@ H5HF_dblock_debug_cb(H5FS_section_info_t *_sect, void *_udata) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5HF_dblock_debug_cb() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_dblock_debug + * Function: H5HF_dblock_debug * - * Purpose: Prints debugging info about a fractal heap direct block. + * Purpose: Prints debugging info about a fractal heap direct block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Feb 28 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * Feb 28 2006 * *------------------------------------------------------------------------- */ @@ -509,11 +509,11 @@ herr_t H5HF_dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, haddr_t hdr_addr, size_t block_size) { - H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ + H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ H5HF_direct_t *dblock = NULL; /* Fractal heap direct block info */ - size_t blk_prefix_size; /* Size of prefix for block */ - size_t amount_free; /* Amount of free space in block */ - uint8_t *marker = NULL; /* Track free space for block */ + size_t blk_prefix_size; /* Size of prefix for block */ + size_t amount_free; /* Amount of free space in block */ + uint8_t *marker = NULL; /* Track free space for block */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -531,13 +531,13 @@ H5HF_dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, /* Load the fractal heap header */ if(NULL == (hdr = H5HF__hdr_protect(f, hdr_addr, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") + HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") /* * Load the heap direct block */ if(NULL == (dblock = H5HF__man_dblock_protect(hdr, addr, block_size, NULL, 0, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load fractal heap direct block") + HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load fractal heap direct block") /* Print opening message */ HDfprintf(stream, "%*sFractal Heap Direct Block...\n", indent, ""); @@ -546,19 +546,19 @@ H5HF_dblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, * Print the values. */ HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of fractal heap that owns this block:", - hdr->heap_addr); + "Address of fractal heap that owns this block:", + hdr->heap_addr); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Offset of direct block in heap:", - dblock->block_off); + "Offset of direct block in heap:", + dblock->block_off); blk_prefix_size = H5HF_MAN_ABS_DIRECT_OVERHEAD(hdr); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Size of block header:", + "Size of block header:", blk_prefix_size); /* Allocate space for the free space markers */ if(NULL == (marker = (uint8_t *)H5MM_calloc(dblock->size))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Initialize the free space information for the heap */ if(H5HF__space_start(hdr, FALSE) < 0) @@ -618,17 +618,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_dblock_debug() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_iblock_print + * Function: H5HF_iblock_print * - * Purpose: Prints debugging info about a fractal heap indirect block. + * Purpose: Prints debugging info about a fractal heap indirect block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Feb 23 2012 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Feb 23 2012 * *------------------------------------------------------------------------- */ @@ -638,7 +638,7 @@ H5HF_iblock_print(const H5HF_indirect_t *iblock, { const H5HF_hdr_t *hdr; /* Pointer to heap's header */ char temp_str[64]; /* Temporary string, for formatting */ - size_t u, v; /* Local index variable */ + size_t u, v; /* Local index variable */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -661,23 +661,23 @@ H5HF_iblock_print(const H5HF_indirect_t *iblock, * Print the values. */ HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth, - "Address of fractal heap that owns this block:", - hdr->heap_addr); + "Address of fractal heap that owns this block:", + hdr->heap_addr); HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth, - "Offset of indirect block in heap:", - iblock->block_off); + "Offset of indirect block in heap:", + iblock->block_off); HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth, - "Size of indirect block:", - iblock->size); + "Size of indirect block:", + iblock->size); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Current # of rows:", - iblock->nrows); + "Current # of rows:", + iblock->nrows); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Max. # of rows:", - iblock->max_rows); + "Max. # of rows:", + iblock->max_rows); HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth, - "Max direct block rows:", - hdr->man_dtable.max_direct_rows); + "Max direct block rows:", + hdr->man_dtable.max_direct_rows); /* Print the entry tables */ if(hdr->filter_len > 0) @@ -750,17 +750,17 @@ H5HF_iblock_print(const H5HF_indirect_t *iblock, FUNC_LEAVE_NOAPI_VOID } /* end H5HF_iblock_print() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_iblock_debug + * Function: H5HF_iblock_debug * - * Purpose: Prints debugging info about a fractal heap indirect block. + * Purpose: Prints debugging info about a fractal heap indirect block. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Mar 7 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * Mar 7 2006 * *------------------------------------------------------------------------- */ @@ -768,7 +768,7 @@ herr_t H5HF_iblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, haddr_t hdr_addr, unsigned nrows) { - H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ + H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ H5HF_indirect_t *iblock = NULL; /* Fractal heap direct block info */ hbool_t did_protect; /* Whether we protected the indirect block or not */ herr_t ret_value = SUCCEED; /* Return value */ @@ -788,13 +788,13 @@ H5HF_iblock_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, /* Load the fractal heap header */ if(NULL == (hdr = H5HF__hdr_protect(f, hdr_addr, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") + HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") /* * Load the heap indirect block */ if(NULL == (iblock = H5HF__man_iblock_protect(hdr, addr, nrows, NULL, 0, FALSE, H5AC__READ_ONLY_FLAG, &did_protect))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load fractal heap indirect block") + HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to load fractal heap indirect block") /* Print the information about the heap's indirect block */ H5HF_iblock_print(iblock, FALSE, stream, indent, fwidth); @@ -808,17 +808,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_iblock_debug() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_sects_debug_cb + * Function: H5HF_sects_debug_cb * - * Purpose: Prints debugging info about a free space section for a fractal heap. + * Purpose: Prints debugging info about a free space section for a fractal heap. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * May 13 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * May 13 2006 * *------------------------------------------------------------------------- */ @@ -839,20 +839,20 @@ H5HF_sects_debug_cb(H5FS_section_info_t *_sect, void *_udata) /* Print generic section information */ HDfprintf(udata->stream, "%*s%-*s %s\n", udata->indent, "", udata->fwidth, - "Section type:", - (sect->sect_info.type == H5HF_FSPACE_SECT_SINGLE ? "single" : + "Section type:", + (sect->sect_info.type == H5HF_FSPACE_SECT_SINGLE ? "single" : (sect->sect_info.type == H5HF_FSPACE_SECT_FIRST_ROW ? "first row" : (sect->sect_info.type == H5HF_FSPACE_SECT_NORMAL_ROW ? "normal row" : "unknown")))); HDfprintf(udata->stream, "%*s%-*s %a\n", udata->indent, "", udata->fwidth, - "Section address:", - sect->sect_info.addr); + "Section address:", + sect->sect_info.addr); HDfprintf(udata->stream, "%*s%-*s %Hu\n", udata->indent, "", udata->fwidth, - "Section size:", - sect->sect_info.size); + "Section size:", + sect->sect_info.size); #ifdef QAK HDfprintf(udata->stream, "%*s%-*s %s\n", udata->indent, "", udata->fwidth, - "Section state:", - (sect->sect_info.state == H5FS_SECT_LIVE ? "live" : "serialized")); + "Section state:", + (sect->sect_info.state == H5FS_SECT_LIVE ? "live" : "serialized")); #endif /* QAK */ /* Dump section-specific debugging information */ @@ -863,25 +863,24 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_sects_debug_cb() */ - + /*------------------------------------------------------------------------- - * Function: H5HF_sects_debug + * Function: H5HF_sects_debug * - * Purpose: Prints debugging info about free space sections for a fractal heap. + * Purpose: Prints debugging info about free space sections for a fractal heap. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * May 9 2006 + * Programmer: Quincey Koziol + * koziol@ncsa.uiuc.edu + * May 9 2006 * *------------------------------------------------------------------------- */ herr_t -H5HF_sects_debug(H5F_t *f, haddr_t fh_addr, FILE *stream, int indent, - int fwidth) +H5HF_sects_debug(H5F_t *f, haddr_t fh_addr, FILE *stream, int indent, int fwidth) { - H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ + H5HF_hdr_t *hdr = NULL; /* Fractal heap header info */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -897,7 +896,7 @@ H5HF_sects_debug(H5F_t *f, haddr_t fh_addr, FILE *stream, int indent, /* Load the fractal heap header */ if(NULL == (hdr = H5HF__hdr_protect(f, fh_addr, H5AC__READ_ONLY_FLAG))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") + HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap header") /* Initialize the free space information for the heap */ if(H5HF__space_start(hdr, FALSE) < 0) diff --git a/src/H5HFiblock.c b/src/H5HFiblock.c index e5c2559..20a62b7 100644 --- a/src/H5HFiblock.c +++ b/src/H5HFiblock.c @@ -256,52 +256,52 @@ H5HF__iblock_decr(H5HF_indirect_t *iblock) /* Check for last reference to block */ if(iblock->rc == 0) { - /* If this indirect block has a parent, reset it's child iblock pointer */ - if(iblock->parent) { - H5HF_indirect_t *par_iblock = iblock->parent; /* Parent indirect block */ - unsigned indir_idx; /* Index in parent's child iblock pointer array */ - - /* Sanity check */ - HDassert(par_iblock->child_iblocks); - HDassert(iblock->par_entry >= (iblock->hdr->man_dtable.max_direct_rows - * iblock->hdr->man_dtable.cparam.width)); - - /* Compute index in parent's child iblock pointer array */ - indir_idx = iblock->par_entry - (iblock->hdr->man_dtable.max_direct_rows - * iblock->hdr->man_dtable.cparam.width); - - /* Reset pointer to pinned child indirect block in parent */ - HDassert(par_iblock->child_iblocks[indir_idx]); - par_iblock->child_iblocks[indir_idx] = NULL; - } /* end if */ - else { - /* Check for root indirect block */ - if(iblock->block_off == 0) { - /* Sanity check - shouldn't be recursively unpinning root indirect block */ - HDassert(iblock->hdr->root_iblock_flags & H5HF_ROOT_IBLOCK_PINNED); - - /* Check if we should reset the root iblock pointer */ - if(H5HF_ROOT_IBLOCK_PINNED == iblock->hdr->root_iblock_flags) { - HDassert(NULL != iblock->hdr->root_iblock); - iblock->hdr->root_iblock = NULL; - } /* end if */ - - /* Indicate that the root indirect block is unpinned */ - iblock->hdr->root_iblock_flags &= (unsigned)(~(H5HF_ROOT_IBLOCK_PINNED)); - } /* end if */ - } /* end else */ - - /* Check if the block is still in the cache */ - if(!iblock->removed_from_cache) { - /* Unpin the indirect block, making it evictable again */ - if(H5HF__iblock_unpin(iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPIN, FAIL, "unable to unpin fractal heap indirect block") - } /* end if */ - else { - /* Destroy the indirect block */ - if(H5HF_man_iblock_dest(iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to destroy fractal heap indirect block") - } /* end else */ + /* If this indirect block has a parent, reset it's child iblock pointer */ + if(iblock->parent) { + H5HF_indirect_t *par_iblock = iblock->parent; /* Parent indirect block */ + unsigned indir_idx; /* Index in parent's child iblock pointer array */ + + /* Sanity check */ + HDassert(par_iblock->child_iblocks); + HDassert(iblock->par_entry >= (iblock->hdr->man_dtable.max_direct_rows + * iblock->hdr->man_dtable.cparam.width)); + + /* Compute index in parent's child iblock pointer array */ + indir_idx = iblock->par_entry - (iblock->hdr->man_dtable.max_direct_rows + * iblock->hdr->man_dtable.cparam.width); + + /* Reset pointer to pinned child indirect block in parent */ + HDassert(par_iblock->child_iblocks[indir_idx]); + par_iblock->child_iblocks[indir_idx] = NULL; + } /* end if */ + else { + /* Check for root indirect block */ + if(iblock->block_off == 0) { + /* Sanity check - shouldn't be recursively unpinning root indirect block */ + HDassert(iblock->hdr->root_iblock_flags & H5HF_ROOT_IBLOCK_PINNED); + + /* Check if we should reset the root iblock pointer */ + if(H5HF_ROOT_IBLOCK_PINNED == iblock->hdr->root_iblock_flags) { + HDassert(NULL != iblock->hdr->root_iblock); + iblock->hdr->root_iblock = NULL; + } /* end if */ + + /* Indicate that the root indirect block is unpinned */ + iblock->hdr->root_iblock_flags &= (unsigned)(~(H5HF_ROOT_IBLOCK_PINNED)); + } /* end if */ + } /* end else */ + + /* Check if the block is still in the cache */ + if(!iblock->removed_from_cache) { + /* Unpin the indirect block, making it evictable again */ + if(H5HF__iblock_unpin(iblock) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPIN, FAIL, "unable to unpin fractal heap indirect block") + } /* end if */ + else { + /* Destroy the indirect block */ + if(H5HF_man_iblock_dest(iblock) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to destroy fractal heap indirect block") + } /* end else */ } /* end if */ done: @@ -408,13 +408,13 @@ H5HF__man_iblock_root_create(H5HF_hdr_t *hdr, size_t min_dblock_size) dblock->parent = iblock; dblock->par_entry = 0; - /* Destroy flush dependency between direct block and header */ - if(H5AC_destroy_flush_dependency(dblock->fd_parent, dblock) < 0) + /* Destroy flush dependency between direct block and header */ + if(H5AC_destroy_flush_dependency(dblock->fd_parent, dblock) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTUNDEPEND, FAIL, "unable to destroy flush dependency") dblock->fd_parent = NULL; - /* Create flush dependency between direct block and new root indirect block */ - if(H5AC_create_flush_dependency(iblock, dblock) < 0) + /* Create flush dependency between direct block and new root indirect block */ + if(H5AC_create_flush_dependency(iblock, dblock) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTDEPEND, FAIL, "unable to create flush dependency") dblock->fd_parent = iblock; @@ -1059,14 +1059,14 @@ H5HF__man_iblock_create(H5HF_hdr_t *hdr, H5HF_indirect_t *par_iblock, iblock->block_off += hdr->man_dtable.row_block_off[par_entry / hdr->man_dtable.cparam.width]; iblock->block_off += hdr->man_dtable.row_block_size[par_entry / hdr->man_dtable.cparam.width] * (par_entry % hdr->man_dtable.cparam.width); - /* Set indirect block parent as flush dependency parent */ - iblock->fd_parent = par_iblock; + /* Set indirect block parent as flush dependency parent */ + iblock->fd_parent = par_iblock; } /* end if */ else { iblock->block_off = 0; /* Must be the root indirect block... */ - /* Set heap header as flush dependency parent */ - iblock->fd_parent = hdr; + /* Set heap header as flush dependency parent */ + iblock->fd_parent = hdr; } /* end else */ /* Update indirect block's statistics */ @@ -1430,69 +1430,69 @@ H5HF__man_iblock_detach(H5HF_indirect_t *iblock, unsigned entry) if(H5HF__man_iblock_root_revert(iblock) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTSHRINK, FAIL, "can't convert root indirect block back to root direct block") - /* If the indirect block wasn't removed already (by reverting it) */ - if(!iblock->removed_from_cache) { - /* Check for reducing size of root indirect block */ - if(iblock->nchildren > 0 && hdr->man_dtable.cparam.start_root_rows != 0 - && entry > iblock->max_child) { - unsigned max_child_row; /* Row for max. child entry */ - - /* Compute information needed for determining whether to reduce size of root indirect block */ - max_child_row = iblock->max_child / hdr->man_dtable.cparam.width; - - /* Check if the root indirect block should be reduced */ - if(iblock->nrows > 1 && max_child_row <= (iblock->nrows / 2)) - if(H5HF__man_iblock_root_halve(iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTSHRINK, FAIL, "can't reduce size of root indirect block") - } /* end if */ - } /* end if */ + /* If the indirect block wasn't removed already (by reverting it) */ + if(!iblock->removed_from_cache) { + /* Check for reducing size of root indirect block */ + if(iblock->nchildren > 0 && hdr->man_dtable.cparam.start_root_rows != 0 + && entry > iblock->max_child) { + unsigned max_child_row; /* Row for max. child entry */ + + /* Compute information needed for determining whether to reduce size of root indirect block */ + max_child_row = iblock->max_child / hdr->man_dtable.cparam.width; + + /* Check if the root indirect block should be reduced */ + if(iblock->nrows > 1 && max_child_row <= (iblock->nrows / 2)) + if(H5HF__man_iblock_root_halve(iblock) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTSHRINK, FAIL, "can't reduce size of root indirect block") + } /* end if */ + } /* end if */ } /* end if */ /* If the indirect block wasn't removed already (by reverting it) */ if(!iblock->removed_from_cache) { - /* Mark indirect block as modified */ - if(H5HF_iblock_dirty(iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark indirect block as dirty") - - /* Check for last child being removed from indirect block */ - if(iblock->nchildren == 0) { - hbool_t did_protect = FALSE; /* Whether the indirect block was protected */ - - /* If this indirect block's refcount is >1, then it's being deleted - * from the fractal heap (since its nchildren == 0), but is still - * referred to from free space sections in the heap (refcount >1). - * Its space in the file needs to be freed now, and it also needs - * to be removed from the metadata cache now, in case the space in - * the file is reused by another piece of metadata that is inserted - * into the cache before the indirect block's entry is evicted - * (having two entries at the same address would be an error, from - * the cache's perspective). - */ - /* Lock indirect block for deletion */ - if(NULL == (del_iblock = H5HF__man_iblock_protect(hdr, iblock->addr, iblock->nrows, iblock->parent, iblock->par_entry, TRUE, H5AC__NO_FLAGS_SET, &did_protect))) - HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap indirect block") - HDassert(did_protect == TRUE); - - /* Check for deleting root indirect block (and no root direct block) */ - if(iblock->block_off == 0 && hdr->man_dtable.curr_root_rows > 0) - /* Reset header information back to "empty heap" state */ - if(H5HF__hdr_empty(hdr) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTSHRINK, FAIL, "can't make heap empty") - - /* Detach from parent indirect block */ - if(iblock->parent) { - /* Destroy flush dependency between indirect block and parent */ - if(H5AC_destroy_flush_dependency(iblock->fd_parent, iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTUNDEPEND, FAIL, "unable to destroy flush dependency") - iblock->fd_parent = NULL; - - /* Detach from parent indirect block */ - if(H5HF__man_iblock_detach(iblock->parent, iblock->par_entry) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTATTACH, FAIL, "can't detach from parent indirect block") - iblock->parent = NULL; - iblock->par_entry = 0; - } /* end if */ - } /* end if */ + /* Mark indirect block as modified */ + if(H5HF_iblock_dirty(iblock) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark indirect block as dirty") + + /* Check for last child being removed from indirect block */ + if(iblock->nchildren == 0) { + hbool_t did_protect = FALSE; /* Whether the indirect block was protected */ + + /* If this indirect block's refcount is >1, then it's being deleted + * from the fractal heap (since its nchildren == 0), but is still + * referred to from free space sections in the heap (refcount >1). + * Its space in the file needs to be freed now, and it also needs + * to be removed from the metadata cache now, in case the space in + * the file is reused by another piece of metadata that is inserted + * into the cache before the indirect block's entry is evicted + * (having two entries at the same address would be an error, from + * the cache's perspective). + */ + /* Lock indirect block for deletion */ + if(NULL == (del_iblock = H5HF__man_iblock_protect(hdr, iblock->addr, iblock->nrows, iblock->parent, iblock->par_entry, TRUE, H5AC__NO_FLAGS_SET, &did_protect))) + HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap indirect block") + HDassert(did_protect == TRUE); + + /* Check for deleting root indirect block (and no root direct block) */ + if(iblock->block_off == 0 && hdr->man_dtable.curr_root_rows > 0) + /* Reset header information back to "empty heap" state */ + if(H5HF__hdr_empty(hdr) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTSHRINK, FAIL, "can't make heap empty") + + /* Detach from parent indirect block */ + if(iblock->parent) { + /* Destroy flush dependency between indirect block and parent */ + if(H5AC_destroy_flush_dependency(iblock->fd_parent, iblock) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTUNDEPEND, FAIL, "unable to destroy flush dependency") + iblock->fd_parent = NULL; + + /* Detach from parent indirect block */ + if(H5HF__man_iblock_detach(iblock->parent, iblock->par_entry) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTATTACH, FAIL, "can't detach from parent indirect block") + iblock->parent = NULL; + iblock->par_entry = 0; + } /* end if */ + } /* end if */ } /* end if */ /* Decrement the reference count on this indirect block if we're not deleting it */ @@ -1501,48 +1501,48 @@ H5HF__man_iblock_detach(H5HF_indirect_t *iblock, unsigned entry) * not being deleted) */ if(H5HF__iblock_decr(iblock) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTDEC, FAIL, "can't decrement reference count on shared indirect block") + HGOTO_ERROR(H5E_HEAP, H5E_CANTDEC, FAIL, "can't decrement reference count on shared indirect block") iblock = NULL; /* Delete indirect block from cache, if appropriate */ if(del_iblock) { - unsigned cache_flags = H5AC__NO_FLAGS_SET; /* Flags for unprotect */ - hbool_t took_ownership = FALSE; /* Flag to indicate that block ownership has transitioned */ - - /* If the refcount is still >0, unpin the block and take ownership - * from the cache, otherwise let the cache destroy it. - */ - if(del_iblock->rc > 0) { - cache_flags |= (H5AC__DELETED_FLAG | H5AC__TAKE_OWNERSHIP_FLAG); - cache_flags |= H5AC__UNPIN_ENTRY_FLAG; - took_ownership = TRUE; - } /* end if */ - else { - /* Entry should be removed from the cache */ - cache_flags |= H5AC__DELETED_FLAG; - - /* If the indirect block is in real file space, tell - * the cache to free its file space as well. - */ - if(!H5F_IS_TMP_ADDR(hdr->f, del_iblock->addr)) - cache_flags |= H5AC__FREE_FILE_SPACE_FLAG; - } /* end else */ - - /* Unprotect the indirect block, with appropriate flags */ - if(H5HF__man_iblock_unprotect(del_iblock, cache_flags, TRUE) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block") - - /* if took ownership, free file space & mark block as removed from cache */ - if(took_ownership) { - /* Free indirect block disk space, if it's in real space */ - if(!H5F_IS_TMP_ADDR(hdr->f, del_iblock->addr)) - if(H5MF_xfree(hdr->f, H5FD_MEM_FHEAP_IBLOCK, del_iblock->addr, (hsize_t)del_iblock->size) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to free fractal heap indirect block file space") - del_iblock->addr = HADDR_UNDEF; - - /* Mark block as removed from the cache */ - del_iblock->removed_from_cache = TRUE; - } /* end if */ + unsigned cache_flags = H5AC__NO_FLAGS_SET; /* Flags for unprotect */ + hbool_t took_ownership = FALSE; /* Flag to indicate that block ownership has transitioned */ + + /* If the refcount is still >0, unpin the block and take ownership + * from the cache, otherwise let the cache destroy it. + */ + if(del_iblock->rc > 0) { + cache_flags |= (H5AC__DELETED_FLAG | H5AC__TAKE_OWNERSHIP_FLAG); + cache_flags |= H5AC__UNPIN_ENTRY_FLAG; + took_ownership = TRUE; + } /* end if */ + else { + /* Entry should be removed from the cache */ + cache_flags |= H5AC__DELETED_FLAG; + + /* If the indirect block is in real file space, tell + * the cache to free its file space as well. + */ + if(!H5F_IS_TMP_ADDR(hdr->f, del_iblock->addr)) + cache_flags |= H5AC__FREE_FILE_SPACE_FLAG; + } /* end else */ + + /* Unprotect the indirect block, with appropriate flags */ + if(H5HF__man_iblock_unprotect(del_iblock, cache_flags, TRUE) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block") + + /* if took ownership, free file space & mark block as removed from cache */ + if(took_ownership) { + /* Free indirect block disk space, if it's in real space */ + if(!H5F_IS_TMP_ADDR(hdr->f, del_iblock->addr)) + if(H5MF_xfree(hdr->f, H5FD_MEM_FHEAP_IBLOCK, del_iblock->addr, (hsize_t)del_iblock->size) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to free fractal heap indirect block file space") + del_iblock->addr = HADDR_UNDEF; + + /* Mark block as removed from the cache */ + del_iblock->removed_from_cache = TRUE; + } /* end if */ } /* end if */ done: @@ -1633,24 +1633,24 @@ H5HF__man_iblock_delete(H5HF_hdr_t *hdr, haddr_t iblock_addr, if(H5F_addr_defined(iblock->ents[entry].addr)) { /* Are we in a direct or indirect block row */ if(row < hdr->man_dtable.max_direct_rows) { - hsize_t dblock_size; /* Size of direct block on disk */ + hsize_t dblock_size; /* Size of direct block on disk */ - /* Check for I/O filters on this heap */ - if(hdr->filter_len > 0) - dblock_size = iblock->filt_ents[entry].size; - else - dblock_size = hdr->man_dtable.row_block_size[row]; + /* Check for I/O filters on this heap */ + if(hdr->filter_len > 0) + dblock_size = iblock->filt_ents[entry].size; + else + dblock_size = hdr->man_dtable.row_block_size[row]; /* Delete child direct block */ if(H5HF__man_dblock_delete(hdr->f, iblock->ents[entry].addr, dblock_size) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTFREE, FAIL, "unable to release fractal heap child direct block") } /* end if */ else { - hsize_t row_block_size; /* The size of blocks in this row */ + hsize_t row_block_size; /* The size of blocks in this row */ unsigned child_nrows; /* Number of rows in new indirect block */ - /* Get the row's block size */ - row_block_size = (hsize_t)hdr->man_dtable.row_block_size[row]; + /* Get the row's block size */ + row_block_size = (hsize_t)hdr->man_dtable.row_block_size[row]; /* Compute # of rows in next child indirect block to use */ child_nrows = H5HF_dtable_size_to_rows(&hdr->man_dtable, row_block_size); @@ -1733,30 +1733,30 @@ H5HF__man_iblock_size(H5F_t *f, H5HF_hdr_t *hdr, haddr_t iblock_addr, /* Indirect entries in this indirect block */ if(iblock->nrows > hdr->man_dtable.max_direct_rows) { - unsigned first_row_bits; /* Number of bits used bit addresses in first row */ + unsigned first_row_bits; /* Number of bits used bit addresses in first row */ unsigned num_indirect_rows; /* Number of rows of blocks in each indirect block */ unsigned entry; /* Current entry in row */ size_t u; /* Local index variable */ entry = hdr->man_dtable.max_direct_rows * hdr->man_dtable.cparam.width; - first_row_bits = H5VM_log2_of2((uint32_t)hdr->man_dtable.cparam.start_block_size) + - H5VM_log2_of2(hdr->man_dtable.cparam.width); + first_row_bits = H5VM_log2_of2((uint32_t)hdr->man_dtable.cparam.start_block_size) + + H5VM_log2_of2(hdr->man_dtable.cparam.width); num_indirect_rows = - (H5VM_log2_gen(hdr->man_dtable.row_block_size[hdr->man_dtable.max_direct_rows]) - first_row_bits) + 1; + (H5VM_log2_gen(hdr->man_dtable.row_block_size[hdr->man_dtable.max_direct_rows]) - first_row_bits) + 1; for(u = hdr->man_dtable.max_direct_rows; u < iblock->nrows; u++, num_indirect_rows++) { size_t v; /* Local index variable */ - for(v = 0; v < hdr->man_dtable.cparam.width; v++, entry++) - if(H5F_addr_defined(iblock->ents[entry].addr)) - if(H5HF__man_iblock_size(f, hdr, iblock->ents[entry].addr, num_indirect_rows, iblock, entry, heap_size) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to get fractal heap storage info for indirect block") + for(v = 0; v < hdr->man_dtable.cparam.width; v++, entry++) + if(H5F_addr_defined(iblock->ents[entry].addr)) + if(H5HF__man_iblock_size(f, hdr, iblock->ents[entry].addr, num_indirect_rows, iblock, entry, heap_size) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTLOAD, FAIL, "unable to get fractal heap storage info for indirect block") } /* end for */ } /* end if */ done: /* Release the indirect block */ if(iblock && H5HF__man_iblock_unprotect(iblock, H5AC__NO_FLAGS_SET, did_protect) < 0) - HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block") + HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block") iblock = NULL; FUNC_LEAVE_NOAPI(ret_value) @@ -1810,17 +1810,17 @@ H5HF__man_iblock_parent_info(const H5HF_hdr_t *hdr, hsize_t block_off, */ prev_par_block_off = par_block_off = 0; while(row >= hdr->man_dtable.max_direct_rows) { - /* Retain previous parent block offset */ - prev_par_block_off = par_block_off; + /* Retain previous parent block offset */ + prev_par_block_off = par_block_off; /* Compute the new parent indirect block's offset in the heap's address space */ /* (based on previous block offset) */ par_block_off += hdr->man_dtable.row_block_off[row]; par_block_off += hdr->man_dtable.row_block_size[row] * col; - /* Preserve current row & column */ - prev_row = row; - prev_col = col; + /* Preserve current row & column */ + prev_row = row; + prev_col = col; /* Look up row & column in new indirect block for object */ if(H5HF_dtable_lookup(&hdr->man_dtable, (block_off - par_block_off), &row, &col) < 0) diff --git a/src/H5HFman.c b/src/H5HFman.c index 394bcff..7f90f49 100644 --- a/src/H5HFman.c +++ b/src/H5HFman.c @@ -140,6 +140,7 @@ H5HF__man_insert(H5HF_hdr_t *hdr, size_t obj_size, const void *obj, void *_id) /* Check for row section */ if(sec_node->sect_info.type == H5HF_FSPACE_SECT_FIRST_ROW || sec_node->sect_info.type == H5HF_FSPACE_SECT_NORMAL_ROW) { + /* Allocate 'single' selection out of 'row' selection */ if(H5HF__man_iblock_alloc_row(hdr, &sec_node) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't break up row section") diff --git a/src/H5HFprivate.h b/src/H5HFprivate.h index 6bd4e46..4eec1c1 100644 --- a/src/H5HFprivate.h +++ b/src/H5HFprivate.h @@ -107,15 +107,13 @@ H5_DLL H5HF_t *H5HF_create(H5F_t *f, const H5HF_create_t *cparam); H5_DLL H5HF_t *H5HF_open(H5F_t *f, haddr_t fh_addr); H5_DLL herr_t H5HF_get_id_len(H5HF_t *fh, size_t *id_len_p/*out*/); H5_DLL herr_t H5HF_get_heap_addr(const H5HF_t *fh, haddr_t *heap_addr/*out*/); -H5_DLL herr_t H5HF_insert(H5HF_t *fh, size_t size, const void *obj, - void *id/*out*/); +H5_DLL herr_t H5HF_insert(H5HF_t *fh, size_t size, const void *obj, void *id/*out*/); H5_DLL herr_t H5HF_get_obj_len(H5HF_t *fh, const void *id, size_t *obj_len_p/*out*/); H5_DLL herr_t H5HF_get_obj_off(H5HF_t *fh, const void *_id, hsize_t *obj_off_p/*out*/); H5_DLL herr_t H5HF_read(H5HF_t *fh, const void *id, void *obj/*out*/); H5_DLL herr_t H5HF_write(H5HF_t *fh, void *id, hbool_t *id_changed, const void *obj); -H5_DLL herr_t H5HF_op(H5HF_t *fh, const void *id, H5HF_operator_t op, - void *op_data); +H5_DLL herr_t H5HF_op(H5HF_t *fh, const void *id, H5HF_operator_t op, void *op_data); H5_DLL herr_t H5HF_remove(H5HF_t *fh, const void *id); H5_DLL herr_t H5HF_close(H5HF_t *fh); H5_DLL herr_t H5HF_delete(H5F_t *f, haddr_t fh_addr); @@ -125,11 +123,9 @@ H5_DLL herr_t H5HF_stat_info(const H5HF_t *fh, H5HF_stat_t *stats); H5_DLL herr_t H5HF_size(const H5HF_t *fh, hsize_t *heap_size/*out*/); /* Debugging routines */ -H5_DLL herr_t H5HF_id_print(H5HF_t *fh, const void *id, FILE *stream, - int indent, int fwidth); +H5_DLL herr_t H5HF_id_print(H5HF_t *fh, const void *id, FILE *stream, int indent, int fwidth); #ifdef H5HF_DEBUGGING -H5_DLL herr_t H5HF_sects_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, - int fwidth); +H5_DLL herr_t H5HF_sects_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth); #endif /* H5HF_DEBUGGING */ #endif /* _H5HFprivate_H */ diff --git a/src/H5HFsection.c b/src/H5HFsection.c index 66c8414..36e966e 100644 --- a/src/H5HFsection.c +++ b/src/H5HFsection.c @@ -692,8 +692,7 @@ H5HF_sect_single_dblock_info(H5HF_hdr_t *hdr, const H5HF_free_section_t *sect, *------------------------------------------------------------------------- */ herr_t -H5HF__sect_single_reduce(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, - size_t amt) +H5HF__sect_single_reduce(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, size_t amt) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2094,8 +2093,7 @@ H5HF__sect_row_valid(const H5FS_section_class_t *cls, const H5FS_section_info_t *------------------------------------------------------------------------- */ static herr_t -H5HF__sect_row_debug(const H5FS_section_info_t *_sect, - FILE *stream, int indent, int fwidth) +H5HF__sect_row_debug(const H5FS_section_info_t *_sect, FILE *stream, int indent, int fwidth) { const H5HF_free_section_t *sect = (const H5HF_free_section_t *)_sect; /* Section to dump info */ @@ -2666,8 +2664,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5HF__sect_indirect_add(H5HF_hdr_t *hdr, H5HF_indirect_t *iblock, - unsigned start_entry, unsigned nentries) +H5HF__sect_indirect_add(H5HF_hdr_t *hdr, H5HF_indirect_t *iblock, unsigned start_entry, unsigned nentries) { H5HF_free_section_t *sect = NULL; /* 'Indirect' free space section to add */ H5HF_free_section_t *first_row_sect = NULL; /* First row section in new indirect section */ @@ -2841,8 +2838,7 @@ done: *------------------------------------------------------------------------- */ static herr_t -H5HF__sect_indirect_revive(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, - H5HF_indirect_t *sect_iblock) +H5HF__sect_indirect_revive(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, H5HF_indirect_t *sect_iblock) { unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5HFspace.c b/src/H5HFspace.c index 5260ae2..37a0502 100644 --- a/src/H5HFspace.c +++ b/src/H5HFspace.c @@ -311,7 +311,7 @@ H5HF__space_revert_root(const H5HF_hdr_t *hdr) /* Only need to scan the sections if the free space has been initialized */ if(hdr->fspace) - /* Iterate over all sections, resetting the parent pointers in 'single' sections */ + /* Iterate over all sections, resetting the parent pointers in 'single' sections */ if(H5FS_sect_iterate(hdr->f, hdr->fspace, H5HF_space_revert_root_cb, NULL) < 0) HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over sections to reset parent pointers") @@ -404,7 +404,7 @@ H5HF__space_create_root(const H5HF_hdr_t *hdr, H5HF_indirect_t *root_iblock) /* Only need to scan the sections if the free space has been initialized */ if(hdr->fspace) - /* Iterate over all sections, seting the parent pointers in 'single' sections to the new indirect block */ + /* Iterate over all sections, seting the parent pointers in 'single' sections to the new indirect block */ if(H5FS_sect_iterate(hdr->f, hdr->fspace, H5HF_space_create_root_cb, root_iblock) < 0) HGOTO_ERROR(H5E_FSPACE, H5E_BADITER, FAIL, "can't iterate over sections to set parent pointers") @@ -602,8 +602,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5HF__space_sect_change_class(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, - uint16_t new_class) +H5HF__space_sect_change_class(H5HF_hdr_t *hdr, H5HF_free_section_t *sect, uint16_t new_class) { herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5HLdbg.c b/src/H5HLdbg.c index e4e6fa8..edb0261 100644 --- a/src/H5HLdbg.c +++ b/src/H5HLdbg.c @@ -76,10 +76,10 @@ H5HL_debug(H5F_t *f, haddr_t addr, FILE * stream, int indent, int fwidth)) "Data bytes allocated for heap:", h->dblk_size); - /* - * Traverse the free list and check that all free blocks fall within + /* Traverse the free list and check that all free blocks fall within * the heap and that no two free blocks point to the same region of - * the heap. */ + * the heap. + */ if(NULL == (marker = (uint8_t *)H5MM_calloc(h->dblk_size))) H5E_THROW(H5E_CANTALLOC, "memory allocation failed"); @@ -88,35 +88,30 @@ H5HL_debug(H5F_t *f, haddr_t addr, FILE * stream, int indent, int fwidth)) char temp_str[32]; HDsnprintf(temp_str, sizeof(temp_str), "Block #%d:", free_block); - HDfprintf(stream, "%*s%-*s %8Zu, %8Zu\n", indent+3, "", MAX(0,fwidth-9), - temp_str, - freelist->offset, freelist->size); - if((freelist->offset + freelist->size) > h->dblk_size) - HDfprintf(stream, "***THAT FREE BLOCK IS OUT OF BOUNDS!\n"); - else { + HDfprintf(stream, "%*s%-*s %8Zu, %8Zu\n", indent+3, "", MAX(0,fwidth-9), temp_str, freelist->offset, freelist->size); + if((freelist->offset + freelist->size) > h->dblk_size) + HDfprintf(stream, "***THAT FREE BLOCK IS OUT OF BOUNDS!\n"); + else { int overlap = 0; size_t i; - for(i = 0; i < freelist->size; i++) { - if(marker[freelist->offset + i]) - overlap++; - marker[freelist->offset + i] = 1; - } /* end for */ - if(overlap) - HDfprintf(stream, "***THAT FREE BLOCK OVERLAPPED A PREVIOUS ONE!\n"); - else - amount_free += freelist->size; - } /* end for */ + for(i = 0; i < freelist->size; i++) { + if(marker[freelist->offset + i]) + overlap++; + marker[freelist->offset + i] = 1; + } /* end for */ + if(overlap) + HDfprintf(stream, "***THAT FREE BLOCK OVERLAPPED A PREVIOUS ONE!\n"); + else + amount_free += freelist->size; + } /* end else */ } /* end for */ if(h->dblk_size) - HDfprintf(stream, "%*s%-*s %.2f%%\n", indent, "", fwidth, - "Percent of heap used:", - ((double)100.0f * (double)(h->dblk_size - amount_free) / (double)h->dblk_size)); + HDfprintf(stream, "%*s%-*s %.2f%%\n", indent, "", fwidth, "Percent of heap used:", + ((double)100.0f * (double)(h->dblk_size - amount_free) / (double)h->dblk_size)); - /* - * Print the data in a VMS-style octal dump. - */ + /* Print the data in a VMS-style octal dump */ H5_buffer_dump(stream, indent, h->dblk_image, marker, (size_t)0, h->dblk_size); CATCH @@ -127,3 +122,4 @@ CATCH H5E_THROW(H5E_CANTFREE, "can't free marker buffer"); END_FUNC(PRIV) /* end H5HL_debug() */ + diff --git a/src/H5Lpublic.h b/src/H5Lpublic.h index e6fd37c..7bdb001 100644 --- a/src/H5Lpublic.h +++ b/src/H5Lpublic.h @@ -41,10 +41,10 @@ #define H5L_SAME_LOC (hid_t)0 /* Current version of the H5L_class_t struct */ -#define H5L_LINK_CLASS_T_VERS 1 +#define H5L_LINK_CLASS_T_VERS 1 /* Previous versions of the H5L_class_t struct */ -#define H5L_LINK_CLASS_T_VERS_0 0 +#define H5L_LINK_CLASS_T_VERS_0 0 #ifdef __cplusplus extern "C" { @@ -43,7 +43,7 @@ #define H5MM_SIG_SIZE 4 #define H5MM_HEAD_GUARD_SIZE 8 #define H5MM_TAIL_GUARD_SIZE 8 -#define H5MM_BLOCK_FROM_BUF(mem) ((H5MM_block_t *)((unsigned char *)mem - (offsetof(H5MM_block_t, b) + H5MM_HEAD_GUARD_SIZE))) +#define H5MM_BLOCK_FROM_BUF(mem) ((H5MM_block_t *)((void *)((unsigned char *)mem - (offsetof(H5MM_block_t, b) + H5MM_HEAD_GUARD_SIZE)))) #endif /* H5_MEMORY_ALLOC_SANITY_CHECK */ @@ -44,7 +44,7 @@ /* First block in page */ #define H5MP_PAGE_FIRST_BLOCK(p) \ - (H5MP_page_blk_t *)((unsigned char *)(p) + H5MP_BLOCK_ALIGN(sizeof(H5MP_page_t))) + (H5MP_page_blk_t *)((void *)((unsigned char *)(p) + H5MP_BLOCK_ALIGN(sizeof(H5MP_page_t)))) /******************/ @@ -294,7 +294,7 @@ found: H5MP_page_blk_t *new_free; /* New free block created */ /* Carve out new free block after block to allocate */ - new_free = (H5MP_page_blk_t *)(((unsigned char *)alloc_free) + needed); + new_free = (H5MP_page_blk_t *)((void *)(((unsigned char *)alloc_free) + needed)); /* Link into existing lists */ new_free->next = alloc_free->next; @@ -361,7 +361,7 @@ H5MP_free(H5MP_pool_t *mp, void *spc) HDassert(spc); /* Get block header for space to free */ - spc_blk = (H5MP_page_blk_t *)(((unsigned char *)spc) - H5MP_BLOCK_ALIGN(sizeof(H5MP_page_blk_t))); + spc_blk = (H5MP_page_blk_t *)((void *)(((unsigned char *)spc) - H5MP_BLOCK_ALIGN(sizeof(H5MP_page_blk_t)))); /* Mark block as free */ HDassert(spc_blk->is_free == FALSE); diff --git a/src/H5MPtest.c b/src/H5MPtest.c index b3f2e24..0cba847 100644 --- a/src/H5MPtest.c +++ b/src/H5MPtest.c @@ -134,7 +134,7 @@ H5MP_pool_is_free_size_correct(const H5MP_pool_t *mp) size_t page_free; /* Size of blocks on free list */ /* Iterate through the blocks in page, accumulating free space */ - blk = (H5MP_page_blk_t *)((unsigned char *)page + H5MP_BLOCK_ALIGN(sizeof(H5MP_page_t))); + blk = (H5MP_page_blk_t *)((void *)((unsigned char *)page + H5MP_BLOCK_ALIGN(sizeof(H5MP_page_t)))); page_free = 0; while(blk != NULL) { if(blk->is_free) diff --git a/src/H5Odtype.c b/src/H5Odtype.c index 8060398..4cf5067 100644 --- a/src/H5Odtype.c +++ b/src/H5Odtype.c @@ -15,13 +15,13 @@ #define H5T_FRIEND /*prevent warning from including H5Tpkg */ -#include "H5private.h" /* Generic Functions */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* Files */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Gprivate.h" /* Groups */ -#include "H5MMprivate.h" /* Memory management */ +#include "H5private.h" /* Generic Functions */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* Files */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Gprivate.h" /* Groups */ +#include "H5MMprivate.h" /* Memory management */ #include "H5Opkg.h" /* Object headers */ #include "H5Tpkg.h" /* Datatypes */ #include "H5VMprivate.h" /* Vectors and arrays */ diff --git a/src/H5Ofsinfo.c b/src/H5Ofsinfo.c index ec2328c..8c42f46 100644 --- a/src/H5Ofsinfo.c +++ b/src/H5Ofsinfo.c @@ -15,7 +15,7 @@ * * Created: H5Ofsinfo.c * Feb 2009 - * Vailin Choi + * Vailin Choi * * Purpose: File space info message. * @@ -25,11 +25,11 @@ #include "H5Omodule.h" /* This source code file is part of the H5O module */ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ #include "H5Fpkg.h" /* File access */ -#include "H5FLprivate.h" /* Free lists */ -#include "H5Opkg.h" /* Object headers */ +#include "H5FLprivate.h" /* Free lists */ +#include "H5Opkg.h" /* Object headers */ /* PRIVATE PROTOTYPES */ static void *H5O_fsinfo_decode(H5F_t *f, H5O_t *open_oh, unsigned mesg_flags, @@ -43,32 +43,32 @@ static herr_t H5O__fsinfo_debug(H5F_t *f, const void *_mesg, FILE * stream, /* This message derives from H5O message class */ const H5O_msg_class_t H5O_MSG_FSINFO[1] = {{ - H5O_FSINFO_ID, /* message id number */ - "fsinfo", /* message name for debugging */ - sizeof(H5O_fsinfo_t), /* native message size */ - 0, /* messages are sharable? */ - H5O_fsinfo_decode, /* decode message */ - H5O_fsinfo_encode, /* encode message */ - H5O_fsinfo_copy, /* copy the native value */ - H5O_fsinfo_size, /* size of free-space manager info message */ - NULL, /* default reset method */ - H5O__fsinfo_free, /* free method */ - NULL, /* file delete method */ - NULL, /* link method */ - NULL, /* set share method */ - NULL, /* can share method */ - NULL, /* pre copy native value to file */ - NULL, /* copy native value to file */ - NULL, /* post copy native value to file */ - NULL, /* get creation index */ - NULL, /* set creation index */ - H5O__fsinfo_debug /* debug the message */ + H5O_FSINFO_ID, /* message id number */ + "fsinfo", /* message name for debugging */ + sizeof(H5O_fsinfo_t), /* native message size */ + 0, /* messages are sharable? */ + H5O_fsinfo_decode, /* decode message */ + H5O_fsinfo_encode, /* encode message */ + H5O_fsinfo_copy, /* copy the native value */ + H5O_fsinfo_size, /* size of free-space manager info message */ + NULL, /* default reset method */ + H5O__fsinfo_free, /* free method */ + NULL, /* file delete method */ + NULL, /* link method */ + NULL, /* set share method */ + NULL, /* can share method */ + NULL, /* pre copy native value to file */ + NULL, /* copy native value to file */ + NULL, /* post copy native value to file */ + NULL, /* get creation index */ + NULL, /* set creation index */ + H5O__fsinfo_debug /* debug the message */ }}; /* Declare a free list to manage the H5O_fsinfo_t struct */ H5FL_DEFINE_STATIC(H5O_fsinfo_t); - + /*------------------------------------------------------------------------- * Function: H5O_fsinfo_decode * @@ -99,7 +99,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, /* Allocate space for message */ if(NULL == (fsinfo = H5FL_CALLOC(H5O_fsinfo_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") for(ptype = H5F_MEM_PAGE_SUPER; ptype < H5F_MEM_PAGE_NTYPES; H5_INC_ENUM(H5F_mem_page_t, ptype)) fsinfo->fs_addr[ptype - 1] = HADDR_UNDEF; @@ -155,7 +155,7 @@ H5O_fsinfo_decode(H5F_t *f, H5O_t H5_ATTR_UNUSED *open_oh, fsinfo->version = H5O_FSINFO_VERSION_1; fsinfo->mapped = TRUE; - + } else { HDassert(vers >= H5O_FSINFO_VERSION_1); @@ -187,7 +187,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_fsinfo_decode() */ - + /*------------------------------------------------------------------------- * Function: H5O_fsinfo_encode * @@ -203,7 +203,7 @@ static herr_t H5O_fsinfo_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, const void *_mesg) { const H5O_fsinfo_t *fsinfo = (const H5O_fsinfo_t *)_mesg; - H5F_mem_page_t ptype; /* Memory type for iteration */ + H5F_mem_page_t ptype; /* Memory type for iteration */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -213,12 +213,12 @@ H5O_fsinfo_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c HDassert(fsinfo); *p++ = (uint8_t)fsinfo->version; /* message version */ - *p++ = fsinfo->strategy; /* File space strategy */ - *p++ = (unsigned char)fsinfo->persist; /* Free-space persist or not */ + *p++ = fsinfo->strategy; /* File space strategy */ + *p++ = (unsigned char)fsinfo->persist; /* Free-space persist or not */ H5F_ENCODE_LENGTH(f, p, fsinfo->threshold); /* Free-space section size threshold */ - H5F_ENCODE_LENGTH(f, p, fsinfo->page_size); /* File space page size */ - UINT16ENCODE(p, fsinfo->pgend_meta_thres); /* Page end metadata threshold */ + H5F_ENCODE_LENGTH(f, p, fsinfo->page_size); /* File space page size */ + UINT16ENCODE(p, fsinfo->pgend_meta_thres); /* Page end metadata threshold */ H5F_addr_encode(f, &p, fsinfo->eoa_pre_fsm_fsalloc); /* EOA before free-space header and section info */ /* Store addresses of free-space managers, if persisting */ @@ -231,7 +231,7 @@ H5O_fsinfo_encode(H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, uint8_t *p, c FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_fsinfo_encode() */ - + /*------------------------------------------------------------------------- * Function: H5O_fsinfo_copy * @@ -257,7 +257,7 @@ H5O_fsinfo_copy(const void *_mesg, void *_dest) /* check args */ HDassert(fsinfo); if(!dest && NULL == (dest = H5FL_CALLOC(H5O_fsinfo_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* copy */ *dest = *fsinfo; @@ -269,7 +269,7 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_fsinfo_copy() */ - + /*------------------------------------------------------------------------- * Function: H5O_fsinfo_size * @@ -293,11 +293,11 @@ H5O_fsinfo_size(const H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, const voi FUNC_ENTER_NOAPI_NOINIT_NOERR ret_value = 3 /* Version, strategy & persist */ - + (size_t)H5F_SIZEOF_SIZE(f) /* Free-space section threshold */ - + (size_t)H5F_SIZEOF_SIZE(f) /* File space page size */ - + 2 /* Page end meta threshold */ - + (size_t)H5F_SIZEOF_ADDR(f); - + + (size_t)H5F_SIZEOF_SIZE(f) /* Free-space section threshold */ + + (size_t)H5F_SIZEOF_SIZE(f) /* File space page size */ + + 2 /* Page end meta threshold */ + + (size_t)H5F_SIZEOF_ADDR(f); + /* Free-space manager addresses */ if(fsinfo->persist) ret_value += (H5F_MEM_PAGE_NTYPES - 1) * (size_t)H5F_SIZEOF_ADDR(f); @@ -305,7 +305,7 @@ H5O_fsinfo_size(const H5F_t *f, hbool_t H5_ATTR_UNUSED disable_shared, const voi FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_fsinfo_size() */ - + /*------------------------------------------------------------------------- * Function: H5O__fsinfo_free * @@ -345,7 +345,7 @@ static herr_t H5O__fsinfo_debug(H5F_t H5_ATTR_UNUSED *f, const void *_mesg, FILE * stream, int indent, int fwidth) { - const H5O_fsinfo_t *fsinfo = (const H5O_fsinfo_t *) _mesg; + const H5O_fsinfo_t *fsinfo = (const H5O_fsinfo_t *) _mesg; H5F_mem_page_t ptype; /* Free-space types for iteration */ FUNC_ENTER_STATIC_NOERR diff --git a/src/H5Oginfo.c b/src/H5Oginfo.c index b75a9c5..4b34a52 100644 --- a/src/H5Oginfo.c +++ b/src/H5Oginfo.c @@ -113,7 +113,7 @@ H5O_ginfo_decode(H5F_t H5_ATTR_UNUSED *f, H5O_t H5_ATTR_UNUSED *open_oh, /* Allocate space for message */ if(NULL == (ginfo = H5FL_CALLOC(H5O_ginfo_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Get the flags for the group */ flags = *p++; @@ -231,7 +231,7 @@ H5O_ginfo_copy(const void *_mesg, void *_dest) /* check args */ HDassert(ginfo); if(!dest && NULL == (dest = H5FL_MALLOC(H5O_ginfo_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* copy */ *dest = *ginfo; diff --git a/src/H5Omessage.c b/src/H5Omessage.c index b38d74e..9fba865 100644 --- a/src/H5Omessage.c +++ b/src/H5Omessage.c @@ -127,11 +127,11 @@ H5O_msg_create(const H5O_loc_t *loc, unsigned type_id, unsigned mesg_flags, /* Pin the object header */ if(NULL == (oh = H5O_pin(loc))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") /* Go append message to object header */ if(H5O_msg_append_oh(loc->file, oh, type_id, mesg_flags, update_flags, mesg) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to append to object header") + HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to append to object header") done: if(oh && H5O_unpin(oh) < 0) @@ -276,7 +276,7 @@ H5O_msg_write(const H5O_loc_t *loc, unsigned type_id, unsigned mesg_flags, /* Pin the object header */ if(NULL == (oh = H5O_pin(loc))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") /* Call the "real" modify routine */ if(H5O__msg_write_real(loc->file, oh, type, mesg_flags, update_flags, mesg) < 0) @@ -384,7 +384,7 @@ H5O__msg_write_real(H5F_t *f, H5O_t *oh, const H5O_msg_class_t *type, /* Check for modifying a constant message */ if(!(update_flags & H5O_UPDATE_FORCE) && (idx_msg->flags & H5O_MSG_FLAG_CONSTANT)) - HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to modify constant message") + HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to modify constant message") /* This message is shared, but it's being modified. */ else if((idx_msg->flags & H5O_MSG_FLAG_SHARED) || (idx_msg->flags & H5O_MSG_FLAG_SHAREABLE)) { htri_t status; /* Status of "try share" call */ @@ -474,15 +474,15 @@ H5O_msg_read(const H5O_loc_t *loc, unsigned type_id, void *mesg) /* Get the object header */ if(NULL == (oh = H5O_protect(loc, H5AC__READ_ONLY_FLAG, FALSE))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, NULL, "unable to protect object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, NULL, "unable to protect object header") /* Call the "real" read routine */ if(NULL == (ret_value = H5O_msg_read_oh(loc->file, oh, type_id, mesg))) - HGOTO_ERROR(H5E_OHDR, H5E_READERROR, NULL, "unable to read object header message") + HGOTO_ERROR(H5E_OHDR, H5E_READERROR, NULL, "unable to read object header message") done: if(oh && H5O_unprotect(loc, oh, H5AC__NO_FLAGS_SET) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, NULL, "unable to release object header") + HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, NULL, "unable to release object header") FUNC_LEAVE_NOAPI_TAG(ret_value) } /* end H5O_msg_read() */ @@ -616,12 +616,12 @@ H5O__msg_reset_real(const H5O_msg_class_t *type, void *native) HDassert(type); if(native) { - if(type->reset) { - if((type->reset)(native) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "reset method failed") - } /* end if */ + if(type->reset) { + if((type->reset)(native) < 0) + HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "reset method failed") + } /* end if */ else - HDmemset(native, 0, type->native_size); + HDmemset(native, 0, type->native_size); } /* end if */ done: @@ -798,7 +798,7 @@ H5O_msg_count(const H5O_loc_t *loc, unsigned type_id) /* Load the object header */ if(NULL == (oh = H5O_protect(loc, H5AC__READ_ONLY_FLAG, FALSE))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to protect object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to protect object header") /* Count the messages of the correct type */ msg_count = H5O_msg_count_real(oh, type); @@ -806,7 +806,7 @@ H5O_msg_count(const H5O_loc_t *loc, unsigned type_id) done: if(oh && H5O_unprotect(loc, oh, H5AC__NO_FLAGS_SET) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to release object header") + HDONE_ERROR(H5E_OHDR, H5E_CANTUNPROTECT, FAIL, "unable to release object header") FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_msg_count() */ @@ -841,7 +841,7 @@ H5O_msg_count_real(const H5O_t *oh, const H5O_msg_class_t *type) /* Loop over all messages, counting the ones of the type looked for */ for(u = ret_value = 0; u < oh->nmesgs; u++) - if(oh->mesg[u].type == type) + if(oh->mesg[u].type == type) ret_value++; FUNC_LEAVE_NOAPI(ret_value) @@ -976,11 +976,11 @@ H5O_msg_remove(const H5O_loc_t *loc, unsigned type_id, int sequence, hbool_t adj /* Pin the object header */ if(NULL == (oh = H5O_pin(loc))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") /* Call the "real" remove routine */ if((ret_value = H5O__msg_remove_real(loc->file, oh, type, sequence, NULL, NULL, adj_link)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message") + HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message") done: if(oh && H5O_unpin(oh) < 0) @@ -1028,11 +1028,11 @@ H5O_msg_remove_op(const H5O_loc_t *loc, unsigned type_id, int sequence, /* Pin the object header */ if(NULL == (oh = H5O_pin(loc))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPIN, FAIL, "unable to pin object header") /* Call the "real" remove routine */ if((ret_value = H5O__msg_remove_real(loc->file, oh, type, sequence, op, op_data, adj_link)) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message") + HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message") done: if(oh && H5O_unpin(oh) < 0) @@ -1316,7 +1316,7 @@ done: */ if(oh_modified & H5O_MODIFY_CONDENSE) if(H5O_condense_header(f, oh) < 0) - HDONE_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't pack object header") + HDONE_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't pack object header") /* Mark object header as changed */ if(H5O_touch_oh(f, oh, FALSE) < 0) @@ -1980,7 +1980,7 @@ H5O__copy_mesg(H5F_t *f, H5O_t *oh, size_t idx, const H5O_msg_class_t *type, /* Protect chunk */ if(NULL == (chk_proxy = H5O__chunk_protect(f, oh, idx_msg->chunkno))) - HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to protect object header chunk") + HGOTO_ERROR(H5E_OHDR, H5E_CANTPROTECT, FAIL, "unable to protect object header chunk") /* Reset existing native information for the header's message */ H5O__msg_reset_real(type, idx_msg->native); diff --git a/src/H5Omtime.c b/src/H5Omtime.c index 69f73e5..e86804b 100644 --- a/src/H5Omtime.c +++ b/src/H5Omtime.c @@ -442,8 +442,6 @@ H5O__mtime_free(void *mesg) * matzke@llnl.gov * Jul 24 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t diff --git a/src/H5Opline.c b/src/H5Opline.c index 1fae1b8..9a0f5da 100644 --- a/src/H5Opline.c +++ b/src/H5Opline.c @@ -12,23 +12,23 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Robb Matzke <matzke@llnl.gov> - * Wednesday, April 15, 1998 + * Programmer: Robb Matzke <matzke@llnl.gov> + * Wednesday, April 15, 1998 * - * Purpose: Data filter pipeline message. + * Purpose: Data filter pipeline message. */ #include "H5Omodule.h" /* This source code file is part of the H5O module */ -#define H5Z_FRIEND /*suppress error about including H5Zpkg */ +#define H5Z_FRIEND /*suppress error about including H5Zpkg */ -#include "H5private.h" /* Generic Functions */ -#include "H5Dprivate.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Opkg.h" /* Object headers */ -#include "H5Zpkg.h" /* Data filters */ +#include "H5private.h" /* Generic Functions */ +#include "H5Dprivate.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Opkg.h" /* Object headers */ +#include "H5Zpkg.h" /* Data filters */ /* PRIVATE PROTOTYPES */ @@ -45,48 +45,48 @@ static herr_t H5O__pline_debug(H5F_t *f, const void *_mesg, FILE * stream, int indent, int fwidth); /* Set up & include shared message "interface" info */ -#define H5O_SHARED_TYPE H5O_MSG_PLINE -#define H5O_SHARED_DECODE H5O_pline_shared_decode -#define H5O_SHARED_DECODE_REAL H5O__pline_decode -#define H5O_SHARED_ENCODE H5O_pline_shared_encode -#define H5O_SHARED_ENCODE_REAL H5O_pline_encode -#define H5O_SHARED_SIZE H5O_pline_shared_size -#define H5O_SHARED_SIZE_REAL H5O_pline_size -#define H5O_SHARED_DELETE H5O__pline_shared_delete +#define H5O_SHARED_TYPE H5O_MSG_PLINE +#define H5O_SHARED_DECODE H5O_pline_shared_decode +#define H5O_SHARED_DECODE_REAL H5O__pline_decode +#define H5O_SHARED_ENCODE H5O_pline_shared_encode +#define H5O_SHARED_ENCODE_REAL H5O_pline_encode +#define H5O_SHARED_SIZE H5O_pline_shared_size +#define H5O_SHARED_SIZE_REAL H5O_pline_size +#define H5O_SHARED_DELETE H5O__pline_shared_delete #undef H5O_SHARED_DELETE_REAL -#define H5O_SHARED_LINK H5O__pline_shared_link +#define H5O_SHARED_LINK H5O__pline_shared_link #undef H5O_SHARED_LINK_REAL -#define H5O_SHARED_COPY_FILE H5O__pline_shared_copy_file +#define H5O_SHARED_COPY_FILE H5O__pline_shared_copy_file #undef H5O_SHARED_COPY_FILE_REAL -#define H5O_SHARED_POST_COPY_FILE H5O_pline_shared_post_copy_file +#define H5O_SHARED_POST_COPY_FILE H5O_pline_shared_post_copy_file #undef H5O_SHARED_POST_COPY_FILE_REAL #undef H5O_SHARED_POST_COPY_FILE_UPD -#define H5O_SHARED_DEBUG H5O_pline_shared_debug -#define H5O_SHARED_DEBUG_REAL H5O__pline_debug -#include "H5Oshared.h" /* Shared Object Header Message Callbacks */ +#define H5O_SHARED_DEBUG H5O_pline_shared_debug +#define H5O_SHARED_DEBUG_REAL H5O__pline_debug +#include "H5Oshared.h" /* Shared Object Header Message Callbacks */ /* This message derives from H5O message class */ const H5O_msg_class_t H5O_MSG_PLINE[1] = {{ - H5O_PLINE_ID, /* message id number */ - "filter pipeline", /* message name for debugging */ - sizeof(H5O_pline_t), /* native message size */ - H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ - H5O_pline_shared_decode, /* decode message */ - H5O_pline_shared_encode, /* encode message */ - H5O_pline_copy, /* copy the native value */ - H5O_pline_shared_size, /* size of raw message */ - H5O__pline_reset, /* reset method */ - H5O__pline_free, /* free method */ - H5O__pline_shared_delete, /* file delete method */ - H5O__pline_shared_link, /* link method */ - NULL, /* set share method */ - NULL, /*can share method */ - H5O_pline_pre_copy_file, /* pre copy native value to file */ - H5O__pline_shared_copy_file, /* copy native value to file */ - H5O_pline_shared_post_copy_file, /* post copy native value to file */ - NULL, /* get creation index */ - NULL, /* set creation index */ - H5O_pline_shared_debug /* debug the message */ + H5O_PLINE_ID, /* message id number */ + "filter pipeline", /* message name for debugging */ + sizeof(H5O_pline_t), /* native message size */ + H5O_SHARE_IS_SHARABLE|H5O_SHARE_IN_OHDR, /* messages are sharable? */ + H5O_pline_shared_decode, /* decode message */ + H5O_pline_shared_encode, /* encode message */ + H5O_pline_copy, /* copy the native value */ + H5O_pline_shared_size, /* size of raw message */ + H5O__pline_reset, /* reset method */ + H5O__pline_free, /* free method */ + H5O__pline_shared_delete, /* file delete method */ + H5O__pline_shared_link, /* link method */ + NULL, /* set share method */ + NULL, /*can share method */ + H5O_pline_pre_copy_file, /* pre copy native value to file */ + H5O__pline_shared_copy_file, /* copy native value to file */ + H5O_pline_shared_post_copy_file, /* post copy native value to file */ + NULL, /* get creation index */ + NULL, /* set creation index */ + H5O_pline_shared_debug /* debug the message */ }}; /* Format version bounds for filter pipleline */ @@ -99,16 +99,16 @@ const unsigned H5O_pline_ver_bounds[] = { /* Declare a free list to manage the H5O_pline_t struct */ H5FL_DEFINE(H5O_pline_t); - + /*------------------------------------------------------------------------- - * Function: H5O__pline_decode + * Function: H5O__pline_decode * - * Purpose: Decodes a filter pipeline message. + * Purpose: Decodes a filter pipeline message. * - * Return: Success: Ptr to the native message. - * Failure: NULL + * Return: Success: Ptr to the native message. + * Failure: NULL * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -118,12 +118,12 @@ H5O__pline_decode(H5F_t H5_ATTR_UNUSED *f, H5O_t H5_ATTR_UNUSED *open_oh, unsigned H5_ATTR_UNUSED mesg_flags, unsigned H5_ATTR_UNUSED *ioflags, size_t p_size, const uint8_t *p) { - H5O_pline_t *pline = NULL; /* Pipeline message */ + H5O_pline_t *pline = NULL; /* Pipeline message */ H5Z_filter_info_t *filter; /* Filter to decode */ - size_t name_length; /* Length of filter name */ - size_t i; /* Local index variable */ + size_t name_length; /* Length of filter name */ + size_t i; /* Local index variable */ const uint8_t *p_end = p + p_size - 1; /* End of the p buffer */ - void *ret_value = NULL; /* Return value */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC @@ -203,7 +203,7 @@ H5O__pline_decode(H5F_t H5_ATTR_UNUSED *f, H5O_t H5_ATTR_UNUSED *open_oh, /* Filter parameters */ if(filter->cd_nelmts) { - size_t j; /* Local index variable */ + size_t j; /* Local index variable */ /* Allocate space for the client data elements, or use the internal buffer */ if(filter->cd_nelmts > H5Z_COMMON_CD_VALUES) { @@ -242,15 +242,15 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O__pline_decode() */ - + /*------------------------------------------------------------------------- - * Function: H5O_pline_encode + * Function: H5O_pline_encode * - * Purpose: Encodes message MESG into buffer P. + * Purpose: Encodes message MESG into buffer P. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -258,9 +258,9 @@ done: static herr_t H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) { - const H5O_pline_t *pline = (const H5O_pline_t*)mesg; /* Pipeline message to encode */ + const H5O_pline_t *pline = (const H5O_pline_t*)mesg; /* Pipeline message to encode */ const H5Z_filter_info_t *filter; /* Filter to encode */ - size_t i, j; /* Local index variables */ + size_t i, j; /* Local index variables */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -272,21 +272,21 @@ H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) *p++ = (uint8_t)pline->version; *p++ = (uint8_t)(pline->nused); if(pline->version == H5O_PLINE_VERSION_1) { - *p++ = 0; /*reserved 1*/ - *p++ = 0; /*reserved 2*/ - *p++ = 0; /*reserved 3*/ - *p++ = 0; /*reserved 4*/ - *p++ = 0; /*reserved 5*/ - *p++ = 0; /*reserved 6*/ + *p++ = 0; /*reserved 1*/ + *p++ = 0; /*reserved 2*/ + *p++ = 0; /*reserved 3*/ + *p++ = 0; /*reserved 4*/ + *p++ = 0; /*reserved 5*/ + *p++ = 0; /*reserved 6*/ } /* end if */ /* Encode filters */ for(i = 0, filter = &pline->filter[0]; i < pline->nused; i++, filter++) { - const char *name; /* Filter name */ - size_t name_length; /* Length of filter name */ + const char *name; /* Filter name */ + size_t name_length; /* Length of filter name */ /* Filter ID */ - UINT16ENCODE(p, filter->id); + UINT16ENCODE(p, filter->id); /* Skip writing the name length & name if the filter is an internal filter */ if(pline->version > H5O_PLINE_VERSION_1 && filter->id < H5Z_FILTER_RESERVED) { @@ -294,7 +294,7 @@ H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) name = NULL; } /* end if */ else { - H5Z_class2_t *cls; /* Filter class */ + H5Z_class2_t *cls; /* Filter class */ /* * Get the filter name. If the pipeline message has a name in it then @@ -310,26 +310,26 @@ H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) } /* end else */ /* Filter flags */ - UINT16ENCODE(p, filter->flags); + UINT16ENCODE(p, filter->flags); /* # of filter parameters */ - UINT16ENCODE(p, filter->cd_nelmts); + UINT16ENCODE(p, filter->cd_nelmts); /* Encode name, if there is one to encode */ - if(name_length > 0) { + if(name_length > 0) { /* Store name, with null terminator */ - HDmemcpy(p, name, name_length); - p += name_length; + HDmemcpy(p, name, name_length); + p += name_length; /* Pad out name to alignment, in older versions */ if(pline->version == H5O_PLINE_VERSION_1) while(name_length++ % 8) *p++ = 0; - } /* end if */ + } /* end if */ /* Filter parameters */ - for(j = 0; j < filter->cd_nelmts; j++) - UINT32ENCODE(p, filter->cd_values[j]); + for(j = 0; j < filter->cd_nelmts; j++) + UINT32ENCODE(p, filter->cd_values[j]); /* Align the parameters for older versions of the format */ if(pline->version == H5O_PLINE_VERSION_1) @@ -340,19 +340,19 @@ H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O_pline_encode() */ - + /*------------------------------------------------------------------------- - * Function: H5O_pline_copy + * Function: H5O_pline_copy * - * Purpose: Copies a filter pipeline message from SRC to DST allocating - * DST if necessary. If DST is already allocated then we assume - * that it isn't initialized. + * Purpose: Copies a filter pipeline message from SRC to DST allocating + * DST if necessary. If DST is already allocated then we assume + * that it isn't initialized. * - * Return: Success: Ptr to DST or allocated result. + * Return: Success: Ptr to DST or allocated result. * - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -360,16 +360,16 @@ H5O_pline_encode(H5F_t H5_ATTR_UNUSED *f, uint8_t *p/*out*/, const void *mesg) static void * H5O_pline_copy(const void *_src, void *_dst/*out*/) { - const H5O_pline_t *src = (const H5O_pline_t *)_src; /* Source pipeline message */ - H5O_pline_t *dst = (H5O_pline_t *)_dst; /* Destination pipeline message */ - size_t i; /* Local index variable */ - H5O_pline_t *ret_value = NULL; /* Return value */ + const H5O_pline_t *src = (const H5O_pline_t *)_src; /* Source pipeline message */ + H5O_pline_t *dst = (H5O_pline_t *)_dst; /* Destination pipeline message */ + size_t i; /* Local index variable */ + H5O_pline_t *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI_NOINIT /* Allocate pipeline message, if not provided */ if(!dst && NULL == (dst = H5FL_MALLOC(H5O_pline_t))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Shallow copy basic fields */ *dst = *src; @@ -378,8 +378,8 @@ H5O_pline_copy(const void *_src, void *_dst/*out*/) dst->nalloc = dst->nused; if(dst->nalloc) { /* Allocate array to hold filters */ - if(NULL == (dst->filter = (H5Z_filter_info_t *)H5MM_calloc(dst->nalloc * sizeof(dst->filter[0])))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + if(NULL == (dst->filter = (H5Z_filter_info_t *)H5MM_calloc(dst->nalloc * sizeof(dst->filter[0])))) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Deep-copy filters */ for(i = 0; i < src->nused; i++) { @@ -418,7 +418,7 @@ H5O_pline_copy(const void *_src, void *_dst/*out*/) } /* end for */ } /* end if */ else - dst->filter = NULL; + dst->filter = NULL; /* Set return value */ ret_value = dst; @@ -426,24 +426,24 @@ H5O_pline_copy(const void *_src, void *_dst/*out*/) done: if(!ret_value && dst) { H5O__pline_reset(dst); - if(!_dst) + if(!_dst) H5O__pline_free(dst); } /* end if */ FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_pline_copy() */ - + /*------------------------------------------------------------------------- - * Function: H5O_pline_size + * Function: H5O_pline_size * - * Purpose: Determines the size of a raw filter pipeline message. + * Purpose: Determines the size of a raw filter pipeline message. * - * Return: Success: Size of message. + * Return: Success: Size of message. * - * Failure: zero + * Failure: zero * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -451,27 +451,27 @@ done: static size_t H5O_pline_size(const H5F_t H5_ATTR_UNUSED *f, const void *mesg) { - const H5O_pline_t *pline = (const H5O_pline_t*)mesg; /* Pipeline message */ + const H5O_pline_t *pline = (const H5O_pline_t*)mesg; /* Pipeline message */ size_t i; /* Local index variable */ size_t ret_value = 0; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR /* Message header */ - ret_value = 1 + /*version */ - 1 + /*number of filters */ - (pline->version == H5O_PLINE_VERSION_1 ? 6 : 0); /*reserved */ + ret_value = (size_t)(1 + /*version */ + 1 + /*number of filters */ + (pline->version == H5O_PLINE_VERSION_1 ? 6 : 0)); /*reserved */ /* Calculate size of each filter in pipeline */ for(i = 0; i < pline->nused; i++) { - size_t name_len; /* Length of filter name */ + size_t name_len; /* Length of filter name */ const char *name; /* Filter name */ /* Don't write the name length & name if the filter is an internal filter */ if(pline->version > H5O_PLINE_VERSION_1 && pline->filter[i].id < H5Z_FILTER_RESERVED) name_len = 0; else { - H5Z_class2_t *cls; /* Filter class */ + H5Z_class2_t *cls; /* Filter class */ /* Get the name of the filter, same as done with H5O_pline_encode() */ if(NULL == (name = pline->filter[i].name) && (cls = H5Z_find(pline->filter[i].id))) @@ -479,13 +479,13 @@ H5O_pline_size(const H5F_t H5_ATTR_UNUSED *f, const void *mesg) name_len = name ? HDstrlen(name) + 1 : 0; } /* end else */ - ret_value += 2 + /*filter identification number */ - (size_t)((pline->version == H5O_PLINE_VERSION_1 || pline->filter[i].id >= H5Z_FILTER_RESERVED) ? 2 : 0) + /*name length */ - 2 + /*flags */ - 2 + /*number of client data values */ - (pline->version == H5O_PLINE_VERSION_1 ? (size_t)H5O_ALIGN_OLD(name_len) : name_len); /*length of the filter name */ + ret_value += 2 + /*filter identification number */ + (size_t)((pline->version == H5O_PLINE_VERSION_1 || pline->filter[i].id >= H5Z_FILTER_RESERVED) ? 2 : 0) + /*name length */ + 2 + /*flags */ + 2 + /*number of client data values */ + (pline->version == H5O_PLINE_VERSION_1 ? (size_t)H5O_ALIGN_OLD(name_len) : name_len); /*length of the filter name */ - ret_value += pline->filter[i].cd_nelmts * 4; + ret_value += pline->filter[i].cd_nelmts * 4; if(pline->version == H5O_PLINE_VERSION_1) if(pline->filter[i].cd_nelmts % 2) ret_value += 4; @@ -494,16 +494,16 @@ H5O_pline_size(const H5F_t H5_ATTR_UNUSED *f, const void *mesg) FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_pline_size() */ - + /*------------------------------------------------------------------------- - * Function: H5O__pline_reset + * Function: H5O__pline_reset * - * Purpose: Resets a filter pipeline message by clearing all filters. - * The MESG buffer is not freed. + * Purpose: Resets a filter pipeline message by clearing all filters. + * The MESG buffer is not freed. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -511,8 +511,8 @@ H5O_pline_size(const H5F_t H5_ATTR_UNUSED *f, const void *mesg) static herr_t H5O__pline_reset(void *mesg) { - H5O_pline_t *pline = (H5O_pline_t*)mesg; /* Pipeline message */ - size_t i; /* Local index variable */ + H5O_pline_t *pline = (H5O_pline_t*)mesg; /* Pipeline message */ + size_t i; /* Local index variable */ FUNC_ENTER_STATIC_NOERR @@ -550,15 +550,15 @@ H5O__pline_reset(void *mesg) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O__pline_reset() */ - + /*------------------------------------------------------------------------- - * Function: H5O__pline_free + * Function: H5O__pline_free * - * Purpose: Frees the message + * Purpose: Frees the message * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, March 11, 2000 * *------------------------------------------------------------------------- @@ -575,7 +575,7 @@ H5O__pline_free(void *mesg) FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O__pline_free() */ - + /*------------------------------------------------------------------------- * Function: H5O_pline_pre_copy_file * @@ -623,17 +623,17 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5O_pline_pre_copy_file() */ - + /*------------------------------------------------------------------------- - * Function: H5O__pline_debug + * Function: H5O__pline_debug * - * Purpose: Prints debugging information for filter pipeline message MESG - * on output stream STREAM. Each line is indented INDENT - * characters and the field name takes up FWIDTH characters. + * Purpose: Prints debugging information for filter pipeline message MESG + * on output stream STREAM. Each line is indented INDENT + * characters and the field name takes up FWIDTH characters. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 15, 1998 * *------------------------------------------------------------------------- @@ -642,8 +642,8 @@ static herr_t H5O__pline_debug(H5F_t H5_ATTR_UNUSED *f, const void *mesg, FILE *stream, int indent, int fwidth) { - const H5O_pline_t *pline = (const H5O_pline_t *)mesg; - size_t i, j; + const H5O_pline_t *pline = (const H5O_pline_t *)mesg; + size_t i, j; FUNC_ENTER_STATIC_NOERR @@ -655,48 +655,48 @@ H5O__pline_debug(H5F_t H5_ATTR_UNUSED *f, const void *mesg, FILE *stream, HDassert(fwidth >= 0); HDfprintf(stream, "%*s%-*s %Zu/%Zu\n", indent, "", fwidth, - "Number of filters:", - pline->nused, - pline->nalloc); + "Number of filters:", + pline->nused, + pline->nalloc); /* Loop over all the filters */ for(i = 0; i < pline->nused; i++) { - char name[32]; - - HDsnprintf(name, sizeof(name), "Filter at position %u", (unsigned)i); - HDfprintf(stream, "%*s%-*s\n", indent, "", fwidth, name); - HDfprintf(stream, "%*s%-*s 0x%04x\n", indent + 3, "", MAX(0, fwidth - 3), - "Filter identification:", - (unsigned)(pline->filter[i].id)); - if(pline->filter[i].name) - HDfprintf(stream, "%*s%-*s \"%s\"\n", indent + 3, "", MAX(0, fwidth - 3), - "Filter name:", - pline->filter[i].name); - else - HDfprintf(stream, "%*s%-*s NONE\n", indent + 3, "", MAX(0, fwidth - 3), - "Filter name:"); - HDfprintf(stream, "%*s%-*s 0x%04x\n", indent + 3, "", MAX(0, fwidth - 3), - "Flags:", - pline->filter[i].flags); - HDfprintf(stream, "%*s%-*s %Zu\n", indent + 3, "", MAX(0, fwidth - 3), - "Num CD values:", - pline->filter[i].cd_nelmts); + char name[32]; + + HDsnprintf(name, sizeof(name), "Filter at position %u", (unsigned)i); + HDfprintf(stream, "%*s%-*s\n", indent, "", fwidth, name); + HDfprintf(stream, "%*s%-*s 0x%04x\n", indent + 3, "", MAX(0, fwidth - 3), + "Filter identification:", + (unsigned)(pline->filter[i].id)); + if(pline->filter[i].name) + HDfprintf(stream, "%*s%-*s \"%s\"\n", indent + 3, "", MAX(0, fwidth - 3), + "Filter name:", + pline->filter[i].name); + else + HDfprintf(stream, "%*s%-*s NONE\n", indent + 3, "", MAX(0, fwidth - 3), + "Filter name:"); + HDfprintf(stream, "%*s%-*s 0x%04x\n", indent + 3, "", MAX(0, fwidth - 3), + "Flags:", + pline->filter[i].flags); + HDfprintf(stream, "%*s%-*s %Zu\n", indent + 3, "", MAX(0, fwidth - 3), + "Num CD values:", + pline->filter[i].cd_nelmts); /* Filter parameters */ - for(j = 0; j < pline->filter[i].cd_nelmts; j++) { - char field_name[32]; - - HDsnprintf(field_name, sizeof(field_name), "CD value %lu", (unsigned long)j); - HDfprintf(stream, "%*s%-*s %u\n", indent + 6, "", MAX(0, fwidth - 6), - field_name, - pline->filter[i].cd_values[j]); - } /* end for */ + for(j = 0; j < pline->filter[i].cd_nelmts; j++) { + char field_name[32]; + + HDsnprintf(field_name, sizeof(field_name), "CD value %lu", (unsigned long)j); + HDfprintf(stream, "%*s%-*s %u\n", indent + 6, "", MAX(0, fwidth - 6), + field_name, + pline->filter[i].cd_values[j]); + } /* end for */ } /* end for */ FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5O__pline_debug() */ - + /*------------------------------------------------------------------------- * Function: H5O_pline_set_version * diff --git a/src/H5Opublic.h b/src/H5Opublic.h index cbccc7a..dcbf85a 100644 --- a/src/H5Opublic.h +++ b/src/H5Opublic.h @@ -26,9 +26,9 @@ #define _H5Opublic_H /* Public headers needed by this file */ -#include "H5public.h" /* Generic Functions */ -#include "H5Ipublic.h" /* IDs */ -#include "H5Lpublic.h" /* Links */ +#include "H5public.h" /* Generic Functions */ +#include "H5Ipublic.h" /* IDs */ +#include "H5Lpublic.h" /* Links */ /*****************/ /* Public Macros */ @@ -38,7 +38,7 @@ #define H5O_COPY_SHALLOW_HIERARCHY_FLAG (0x0001u) /* Copy only immediate members */ #define H5O_COPY_EXPAND_SOFT_LINK_FLAG (0x0002u) /* Expand soft links into new objects */ #define H5O_COPY_EXPAND_EXT_LINK_FLAG (0x0004u) /* Expand external links into new objects */ -#define H5O_COPY_EXPAND_REFERENCE_FLAG (0x0008u) /* Copy objects that are pointed by references */ +#define H5O_COPY_EXPAND_REFERENCE_FLAG (0x0008u) /* Copy objects that are pointed by references */ #define H5O_COPY_WITHOUT_ATTR_FLAG (0x0010u) /* Copy object without copying attributes */ #define H5O_COPY_PRESERVE_NULL_FLAG (0x0020u) /* Copy NULL messages (empty space) */ #define H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG (0x0040u) /* Merge committed datatypes in dest file */ @@ -155,13 +155,13 @@ typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data); /********************/ +/*********************/ +/* Public Prototypes */ +/*********************/ #ifdef __cplusplus extern "C" { #endif -/*********************/ -/* Public Prototypes */ -/*********************/ H5_DLL hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id); H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); H5_DLL hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, diff --git a/src/H5Ounknown.c b/src/H5Ounknown.c index dbab28c..89c00ad 100644 --- a/src/H5Ounknown.c +++ b/src/H5Ounknown.c @@ -63,11 +63,11 @@ H5FL_DEFINE(H5O_unknown_t); /*------------------------------------------------------------------------- - * Function: H5O__unknown_free + * Function: H5O__unknown_free * - * Purpose: Frees the message + * Purpose: Frees the message * - * Return: Non-negative on success/Negative on failure + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Tuesday, May 1, 2007 diff --git a/src/H5Pacpl.c b/src/H5Pacpl.c index 4368dd6..166a35f 100644 --- a/src/H5Pacpl.c +++ b/src/H5Pacpl.c @@ -13,11 +13,9 @@ /*------------------------------------------------------------------------- * - * Created: H5Pacpl.c - * January 2 2006 - * James Laird <jlaird@ncsa.uiuc.edu> + * Created: H5Pacpl.c * - * Purpose: Attribute creation property list class routines + * Purpose: Attribute creation property list class routines * *------------------------------------------------------------------------- */ @@ -32,9 +30,9 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Ppkg.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Ppkg.h" /* Property lists */ /****************/ @@ -63,21 +61,21 @@ /* Attribute creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_ACRT[1] = {{ - "attribute create", /* Class name for debugging */ - H5P_TYPE_ATTRIBUTE_CREATE, /* Class type */ - - &H5P_CLS_STRING_CREATE_g, /* Parent class */ - &H5P_CLS_ATTRIBUTE_CREATE_g, /* Pointer to class */ - &H5P_CLS_ATTRIBUTE_CREATE_ID_g, /* Pointer to class ID */ - &H5P_LST_ATTRIBUTE_CREATE_ID_g, /* Pointer to default property list ID */ - NULL, /* Default property registration routine */ - - NULL, /* Class creation callback */ - NULL, /* Class creation callback info */ - NULL, /* Class copy callback */ - NULL, /* Class copy callback info */ - NULL, /* Class close callback */ - NULL /* Class close callback info */ + "attribute create", /* Class name for debugging */ + H5P_TYPE_ATTRIBUTE_CREATE, /* Class type */ + + &H5P_CLS_STRING_CREATE_g, /* Parent class */ + &H5P_CLS_ATTRIBUTE_CREATE_g, /* Pointer to class */ + &H5P_CLS_ATTRIBUTE_CREATE_ID_g, /* Pointer to class ID */ + &H5P_LST_ATTRIBUTE_CREATE_ID_g, /* Pointer to default property list ID */ + NULL, /* Default property registration routine */ + + NULL, /* Class creation callback */ + NULL, /* Class creation callback info */ + NULL, /* Class copy callback */ + NULL, /* Class copy callback info */ + NULL, /* Class close callback */ + NULL /* Class close callback info */ }}; @@ -85,4 +83,3 @@ const H5P_libclass_t H5P_CLS_ACRT[1] = {{ /* Library Private Variables */ /*****************************/ - diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 07fa9b7..b5ae02a 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -13,11 +13,9 @@ /*------------------------------------------------------------------------- * - * Created: H5Pdcpl.c - * February 26 1998 - * Robb Matzke <matzke@llnl.gov> + * Created: H5Pdcpl.c * - * Purpose: Dataset creation property list class routines + * Purpose: Dataset creation property list class routines * *------------------------------------------------------------------------- */ @@ -33,19 +31,19 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5CXprivate.h" /* API Contexts */ -#include "H5Dpkg.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Oprivate.h" /* Object headers */ -#include "H5Ppkg.h" /* Property lists */ -#include "H5Sprivate.h" /* Dataspaces */ -#include "H5Tprivate.h" /* Datatypes */ -#include "H5VMprivate.h" /* Vectors and arrays */ -#include "H5Zprivate.h" /* Data filters */ +#include "H5private.h" /* Generic Functions */ +#include "H5CXprivate.h" /* API Contexts */ +#include "H5Dpkg.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Oprivate.h" /* Object headers */ +#include "H5Ppkg.h" /* Property lists */ +#include "H5Sprivate.h" /* Dataspaces */ +#include "H5Tprivate.h" /* Datatypes */ +#include "H5VMprivate.h" /* Vectors and arrays */ +#include "H5Zprivate.h" /* Data filters */ /****************/ @@ -388,7 +386,6 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) size_t u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_STATIC /* Sanity check */ @@ -440,7 +437,6 @@ H5P__dcrt_layout_enc(const void *value, void **_pp, size_t *size) * list before we get here. */ tmp_size = (size_t)-1; tmp_p = *pp; - if(H5S_encode(layout->storage.u.virt.list[u].source_select, pp, &tmp_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTENCODE, FAIL, "unable to serialize source selection") *size += (size_t)(*pp - tmp_p); @@ -3220,10 +3216,10 @@ H5Pset_fill_value(hid_t plist_id, hid_t type_id, const void *value) H5T_path_t *tpath; /* Conversion information */ /* Retrieve pointer to datatype */ - if(NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE))) + if(NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype") - /* Set the fill value */ + /* Set the fill value */ if(NULL == (fill.type = H5T_copy(type, H5T_COPY_TRANSIENT))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "can't copy datatype") fill.size = (ssize_t)H5T_get_size(type); diff --git a/src/H5Pgcpl.c b/src/H5Pgcpl.c index 6f1fab1..8ff8442 100644 --- a/src/H5Pgcpl.c +++ b/src/H5Pgcpl.c @@ -32,12 +32,12 @@ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Gprivate.h" /* Groups */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Oprivate.h" /* Object headers */ -#include "H5Ppkg.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Gprivate.h" /* Groups */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Oprivate.h" /* Object headers */ +#include "H5Ppkg.h" /* Property lists */ /****************/ diff --git a/src/H5Plcpl.c b/src/H5Plcpl.c index 6508a82..6084ffe 100644 --- a/src/H5Plcpl.c +++ b/src/H5Plcpl.c @@ -13,11 +13,9 @@ /*------------------------------------------------------------------------- * - * Created: H5Plcpl.c - * May 8 2006 - * Peter Cao <xcao@ncsa.uiuc.edu> + * Created: H5Plcpl.c * - * Purpose: Link creation property list class routines + * Purpose: Link creation property list class routines * *------------------------------------------------------------------------- */ @@ -359,7 +359,6 @@ H5TS_win32_process_enter(PINIT_ONCE InitOnce, PVOID Parameter, PVOID *lpContex) ret_value = FALSE; #endif /* H5_HAVE_CODESTACK */ - /* Set up thread local storage */ if(TLS_OUT_OF_INDEXES == (H5TS_apictx_key_g = TlsAlloc())) ret_value = FALSE; @@ -428,12 +427,9 @@ H5TS_win32_process_exit(void) /* Clean up per-process thread local storage */ TlsFree(H5TS_errstk_key_g); - #ifdef H5_HAVE_CODESTACK TlsFree(H5TS_funcstk_key_g); #endif /* H5_HAVE_CODESTACK */ - - /* Clean up per-process thread local storage */ TlsFree(H5TS_apictx_key_g); return; @@ -479,7 +475,6 @@ H5TS_win32_thread_exit(void) LocalFree((HLOCAL)lpvData); #endif /* H5_HAVE_CODESTACK */ - /* Clean up per-thread thread local storage */ lpvData = TlsGetValue(H5TS_apictx_key_g); if(lpvData) LocalFree((HLOCAL)lpvData); @@ -534,3 +529,4 @@ H5TS_create_thread(void *(*func)(void *), H5TS_attr_t *attr, void *udata) } /* H5TS_create_thread */ #endif /* H5_HAVE_THREADSAFE */ + diff --git a/src/H5TSprivate.h b/src/H5TSprivate.h index 8d74676..9e093a6 100644 --- a/src/H5TSprivate.h +++ b/src/H5TSprivate.h @@ -128,3 +128,4 @@ H5_DLL H5TS_thread_t H5TS_create_thread(void *(*func)(void *), H5TS_attr_t * att #endif /* c_plusplus || __cplusplus */ #endif /* H5TSprivate_H_ */ + diff --git a/src/H5Tcompound.c b/src/H5Tcompound.c index feece57..d4f1008 100644 --- a/src/H5Tcompound.c +++ b/src/H5Tcompound.c @@ -202,7 +202,7 @@ done: * modifying the returned datatype does not * modify the member type. * - * Failure: Negative + * Failure: H5I_INVALID_HID * * Programmer: Robb Matzke * Wednesday, January 7, 1998 @@ -221,17 +221,17 @@ H5Tget_member_type(hid_t type_id, unsigned membno) /* Check args */ if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)) || H5T_COMPOUND != dt->shared->type) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a compound datatype") + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a compound datatype") if(membno >= dt->shared->u.compnd.nmembs) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid member number") + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "invalid member number") /* Retrieve the datatype for the member */ if(NULL == (memb_dt = H5T_get_member_type(dt, membno, H5T_COPY_REOPEN))) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, H5I_INVALID_HID, "unable to retrieve member type") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, H5I_INVALID_HID, "unable to retrieve member type") /* Get an ID for the datatype */ if((ret_value = H5I_register(H5I_DATATYPE, memb_dt, TRUE)) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable register datatype atom") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable register datatype atom") done: if(ret_value < 0) diff --git a/src/H5Torder.c b/src/H5Torder.c index 462b732..ca00555 100644 --- a/src/H5Torder.c +++ b/src/H5Torder.c @@ -199,7 +199,7 @@ done: herr_t H5Tset_order(hid_t type_id, H5T_order_t order) { - H5T_t *dt; /* Datatype to modify */ + H5T_t *dt = NULL; /* Datatype to modify */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) @@ -207,15 +207,15 @@ H5Tset_order(hid_t type_id, H5T_order_t order) /* Check args */ if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE))) - HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, FAIL, "not a datatype") + HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, FAIL, "not a datatype") if(order < H5T_ORDER_LE || order > H5T_ORDER_NONE || order == H5T_ORDER_MIXED) - HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, FAIL, "illegal byte order") + HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, FAIL, "illegal byte order") if(H5T_STATE_TRANSIENT != dt->shared->state) - HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype is read-only") + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "datatype is read-only") /* Call internal routine to set the order */ if(H5T_set_order(dt, order) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, FAIL, "can't set order") + HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, FAIL, "can't set order") done: FUNC_LEAVE_API(ret_value) diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h index e1b996c..05879ff 100644 --- a/src/H5Tpkg.h +++ b/src/H5Tpkg.h @@ -167,7 +167,7 @@ struct H5T_path_t { char name[H5T_NAMELEN]; /*name for debugging only */ H5T_t *src; /*source datatype */ H5T_t *dst; /*destination datatype */ - H5T_conv_func_t conv; /* Conversion funcion */ + H5T_conv_func_t conv; /* Conversion function */ hbool_t is_hard; /*is it a hard function? */ hbool_t is_noop; /*is it the noop conversion? */ hbool_t are_compounds; /*are source and dest both compounds?*/ diff --git a/src/H5Zpublic.h b/src/H5Zpublic.h index 0df05f0..a2a44fa 100644 --- a/src/H5Zpublic.h +++ b/src/H5Zpublic.h @@ -25,7 +25,7 @@ * Filter identifiers. Values 0 through 255 are for filters defined by the * HDF5 library. Values 256 through 511 are available for testing new * filters. Subsequent values should be obtained from the HDF5 development - * team at hdf5dev@ncsa.uiuc.edu. These values will never change because they + * team at help@hdfgroup.org. These values will never change because they * appear in the HDF5 files. */ typedef int H5Z_filter_t; diff --git a/src/H5Ztrans.c b/src/H5Ztrans.c index 67646a0..f8fc325 100644 --- a/src/H5Ztrans.c +++ b/src/H5Ztrans.c @@ -850,7 +850,7 @@ H5Z_parse_factor(H5Z_token *current, H5Z_datval_ptrs* dat_val_pointers) if (!factor) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "Unable to allocate new node") - sscanf(current->tok_begin, "%ld", &factor->value.int_val); + HDsscanf(current->tok_begin, "%ld", &factor->value.int_val); break; case H5Z_XFORM_FLOAT: @@ -858,7 +858,7 @@ H5Z_parse_factor(H5Z_token *current, H5Z_datval_ptrs* dat_val_pointers) if (!factor) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "Unable to allocate new node") - sscanf(current->tok_begin, "%lf", &factor->value.float_val); + HDsscanf(current->tok_begin, "%lf", &factor->value.float_val); break; case H5Z_XFORM_SYMBOL: diff --git a/test/cork.c b/test/cork.c index 09076d2..06a520d 100644 --- a/test/cork.c +++ b/test/cork.c @@ -1529,11 +1529,13 @@ error: static unsigned test_objs_cork(hbool_t swmr, hbool_t new_format) { - hid_t fid; /* HDF5 File ID */ - hid_t fapl; /* File access property list */ - hid_t gid, did, tid; /* Object IDs */ - hid_t sid; /* Dataspace ID */ - hid_t aid; /* Attribute ID */ + hid_t fid = H5I_INVALID_HID; /* HDF5 File ID */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ + hid_t gid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; /* Object IDs */ + hid_t sid = H5I_INVALID_HID; /* Dataspace ID */ + hid_t aid = H5I_INVALID_HID; /* Attribute ID */ hsize_t dims[RANK]; /* Dataset dimension sizes */ hbool_t corked; /* Cork status of an object */ unsigned flags; /* File access flags */ diff --git a/testpar/t_dset.c b/testpar/t_dset.c index d4e556d..6c91a41 100644 --- a/testpar/t_dset.c +++ b/testpar/t_dset.c @@ -4162,7 +4162,7 @@ dataset_atomicity(void) } /* should fail */ - ret = H5Fset_mpi_atomicity (fid , TRUE); + ret = H5Fset_mpi_atomicity(fid , TRUE); VRFY((ret == FAIL), "H5Fset_mpi_atomicity failed"); if(MAINPROCESS){ @@ -4184,7 +4184,7 @@ dataset_atomicity(void) ret = H5Pclose(acc_tpl); VRFY((ret >= 0), "H5Pclose succeeded"); - ret = H5Fset_mpi_atomicity (fid , TRUE); + ret = H5Fset_mpi_atomicity(fid , TRUE); VRFY((ret >= 0), "H5Fset_mpi_atomicity succeeded"); /* open dataset1 (contiguous case) */ @@ -4203,7 +4203,7 @@ dataset_atomicity(void) } /* check that the atomicity flag is set */ - ret = H5Fget_mpi_atomicity (fid , &atomicity); + ret = H5Fget_mpi_atomicity(fid , &atomicity); VRFY((ret >= 0), "atomcity get failed"); VRFY((atomicity == TRUE), "atomcity set failed"); @@ -4272,7 +4272,7 @@ dataset_atomicity(void) atomicity = FALSE; /* check that the atomicity flag is set */ - ret = H5Fget_mpi_atomicity (fid , &atomicity); + ret = H5Fget_mpi_atomicity(fid , &atomicity); VRFY((ret >= 0), "atomcity get failed"); VRFY((atomicity == TRUE), "atomcity set failed"); diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index a6885df..ae299fa 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -133,7 +133,7 @@ io_time_t * set_time(io_time_t *pt, timer_type t, int start_stop) { /* sanity check */ - assert(pt); + HDassert(pt); switch(pt->type){ #ifdef H5_HAVE_PARALLEL @@ -216,6 +216,9 @@ set_time(io_time_t *pt, timer_type t, int start_stop) H5_ATTR_PURE double get_time(io_time_t *pt, timer_type t) { + /* sanity check */ + HDassert(pt); + return pt->total_time[t]; } diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c index c18df6c..24f4e6c 100644 --- a/tools/src/h5repack/h5repack.c +++ b/tools/src/h5repack/h5repack.c @@ -41,7 +41,9 @@ static int have_request(pack_opt_t *options); * Return: 0, ok, -1, fail *------------------------------------------------------------------------- */ -int h5repack(const char* infile, const char* outfile, pack_opt_t *options) { +int +h5repack(const char* infile, const char* outfile, pack_opt_t *options) +{ /* check input */ if (check_options(options) < 0) return -1; @@ -55,7 +57,7 @@ int h5repack(const char* infile, const char* outfile, pack_opt_t *options) { return -1; return 0; -} +} /* end h5repack() */ /*------------------------------------------------------------------------- * Function: h5repack_init @@ -86,7 +88,7 @@ h5repack_init(pack_opt_t *options, int verbose, hbool_t latest) } return (options_table_init(&(options->op_tbl))); -} +} /* end h5repack_init() */ /*------------------------------------------------------------------------- * Function: h5repack_end @@ -95,9 +97,11 @@ h5repack_init(pack_opt_t *options, int verbose, hbool_t latest) *------------------------------------------------------------------------- */ -int h5repack_end(pack_opt_t *options) { +int +h5repack_end(pack_opt_t *options) +{ return options_table_free(options->op_tbl); -} +} /* end h5repack_end() */ /*------------------------------------------------------------------------- * Function: h5repack_addfilter @@ -138,7 +142,7 @@ h5repack_addfilter(const char *str, pack_opt_t *options) HDfree(obj_list); return 0; -} +} /* end h5repack_addfilter() */ /*------------------------------------------------------------------------- * Function: h5repack_addlayout @@ -175,7 +179,7 @@ h5repack_addlayout(const char *str, pack_opt_t *options) if (pack.layout == H5D_CHUNKED) { /* -2 means the NONE option, remove chunking and set the global layout to contiguous */ - if (pack.chunk.rank == -2) + if (pack.chunk.rank == -2) /* TODO: fix 'magic number' */ options->layout_g = H5D_CONTIGUOUS; /* otherwise set the global chunking type */ else { @@ -192,10 +196,10 @@ h5repack_addlayout(const char *str, pack_opt_t *options) HDfree(obj_list); ret_value = 0; - } + } /* end if obj_list exists */ return ret_value; -} +} /* end h5repack_addlayout() */ /* Note: The below copy_named_datatype(), named_datatype_free(), copy_attr() * were located in h5repack_copy.c as static prior to bugfix1726. @@ -215,8 +219,13 @@ h5repack_addlayout(const char *str, pack_opt_t *options) * to free the stack. *------------------------------------------------------------------------- */ -hid_t copy_named_datatype(hid_t type_in, hid_t fidout, - named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options) { +hid_t +copy_named_datatype(hid_t type_in, + hid_t fidout, + named_dt_t **named_dt_head_p, + trav_table_t *travt, + pack_opt_t *options) +{ named_dt_t *dt = *named_dt_head_p; /* Stack pointer */ named_dt_t *dt_ret = NULL; /* Datatype to return */ H5O_info_t oinfo; /* Object info of input dtype */ @@ -239,7 +248,8 @@ hid_t copy_named_datatype(hid_t type_in, hid_t fidout, if (travt->objs[i].type == H5TRAV_TYPE_NAMED_DATATYPE) { /* Push onto the stack */ if (NULL == (dt = (named_dt_t *)HDmalloc(sizeof(named_dt_t)))) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "buffer allocation failed failed"); dt->next = *named_dt_head_p; *named_dt_head_p = dt; @@ -250,13 +260,14 @@ hid_t copy_named_datatype(hid_t type_in, hid_t fidout, /* Check if this type is the one requested */ if (oinfo.addr == dt->addr_in) { dt_ret = dt; - } /* end if */ - } /* end if */ - } /* end for */ - } /* end else */ + } + } /* end if named datatype */ + } /* end for each object in traversal table */ + } /* end else (create the stack) */ /* Handle the case that the requested datatype was not found. This is - * possible if the datatype was committed anonymously in the input file. */ + * possible if the datatype was committed anonymously in the input file. + */ if (!dt_ret) { /* Push the new datatype onto the stack */ if (NULL == (dt_ret = (named_dt_t *)HDmalloc(sizeof(named_dt_t)))) @@ -267,31 +278,35 @@ hid_t copy_named_datatype(hid_t type_in, hid_t fidout, /* Update the address and id */ dt_ret->addr_in = oinfo.addr; dt_ret->id_out = -1; - } /* end if */ + } /* end if requested datatype not found */ /* If the requested datatype does not yet exist in the output file, copy it - * anonymously */ + * anonymously + */ if (dt_ret->id_out < 0) { if (options->use_native == 1) dt_ret->id_out = H5Tget_native_type(type_in, H5T_DIR_DEFAULT); else dt_ret->id_out = H5Tcopy(type_in); if (dt_ret->id_out < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type-H5Tcopy failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Tget_native_type-H5Tcopy failed"); if (H5Tcommit_anon(fidout, dt_ret->id_out, H5P_DEFAULT, H5P_DEFAULT) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommit_anon failed"); - } /* end if */ + } /* end if named datatype not yet in output file */ /* Set return value */ ret_value = dt_ret->id_out; - /* Increment the ref count on id_out, because the calling function will try to close it */ - if(H5Iinc_ref(ret_value) < 0) + /* Increment the ref count on id_out, because the calling function will try + * to close it. (TODO: fix scope envy) + */ + if (H5Iinc_ref(ret_value) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Iinc_ref failed"); done: return ret_value; -} /* end copy_named_datatype */ +} /* end copy_named_datatype() */ /*------------------------------------------------------------------------- * Function: named_datatype_free @@ -299,7 +314,9 @@ done: * Purpose: Frees the stack of named datatypes. *------------------------------------------------------------------------- */ -int named_datatype_free(named_dt_t **named_dt_head_p, int ignore_err) { +int +named_datatype_free(named_dt_t **named_dt_head_p, int ignore_err) +{ named_dt_t *dt = *named_dt_head_p; int ret_value = -1; @@ -310,13 +327,13 @@ int named_datatype_free(named_dt_t **named_dt_head_p, int ignore_err) { dt = dt->next; HDfree(*named_dt_head_p); *named_dt_head_p = dt; - } /* end while */ + } ret_value = 0; done: return (ret_value); -} /* end named_datatype_free */ +} /* end named_datatype_free() */ /*------------------------------------------------------------------------- * Function: copy_attr @@ -330,8 +347,12 @@ done: *------------------------------------------------------------------------- */ int -copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, - trav_table_t *travt, pack_opt_t *options) +copy_attr( + hid_t loc_in, + hid_t loc_out, + named_dt_t **named_dt_head_p, + trav_table_t *travt, + pack_opt_t *options) { int ret_value = 0; hid_t attr_id = -1; /* attr ID */ @@ -361,14 +382,13 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, */ for (u = 0; u < (unsigned) oinfo.num_attrs; u++) { /* open attribute */ - if ((attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t) u, H5P_DEFAULT, H5P_DEFAULT)) < 0) + attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t) u, H5P_DEFAULT, H5P_DEFAULT); + if (attr_id < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed"); - /* get name */ if (H5Aget_name(attr_id, (size_t) 255, name) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); - /* get the file datatype */ if ((ftype_id = H5Aget_type(attr_id)) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed"); @@ -385,18 +405,19 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, /* Copy named dt */ if ((wtype_id = copy_named_datatype(ftype_id, fidout, named_dt_head_p, travt, options)) < 0) { H5Fclose(fidout); - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed"); - } /* end if */ + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "copy_named_datatype failed"); + } if (H5Fclose(fidout) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Fclose failed"); - } /* end if */ + } /* end if datatype is committed and we have a traversal table */ else { if (options->use_native == 1) wtype_id = H5Tget_native_type(ftype_id, H5T_DIR_DEFAULT); else wtype_id = H5Tcopy(ftype_id); - } /* end else */ + } /* end else: uncommitted datatype and/or no traversal table */ /* get the dataspace handle */ if ((space_id = H5Aget_space(attr_id)) < 0) @@ -404,7 +425,8 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, /* get dimensions */ if ((rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Sget_simple_extent_dims failed"); nelmts = 1; for (j = 0; j < rank; j++) @@ -413,12 +435,12 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, if ((msize = H5Tget_size(wtype_id)) == 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); - /*------------------------------------------------------------------------- - * object references are a special case. We cannot just copy the buffers, - * but instead we recreate the reference. - * This is done on a second sweep of the file that just copies the referenced - * objects at copy_refs_attr() - *------------------------------------------------------------------------- + /*--------------------------------------------------------------------- + * object references are a special case. We cannot just copy the + * buffers, but instead we recreate the reference. + * This is done on a second sweep of the file that just copies the + * referenced objects at copy_refs_attr(). + *--------------------------------------------------------------------- */ type_class = H5Tget_class(wtype_id); is_ref = (type_class == H5T_REFERENCE); @@ -429,7 +451,7 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, is_ref = (is_ref || (H5Tget_class(base_type) == H5T_REFERENCE)); if (H5Tclose(base_type) < 0) H5TOOLS_INFO(H5E_tools_min_id_g, "H5Tclose base_type failed"); - } + } /* end if type_class is variable length or array */ if (type_class == H5T_COMPOUND) { int nmembers = H5Tget_nmembers(wtype_id); @@ -444,13 +466,13 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, is_ref = 1; break; } - } /* for (j=0; i<nmembers; j++) */ - } /* if (type_class == H5T_COMPOUND) */ + } /* end for each member */ + } /* end if type_class is H5T_COMPOUND */ if (!is_ref) { - /*------------------------------------------------------------------------- + /*----------------------------------------------------------------- * read to memory - *------------------------------------------------------------------------- + *----------------------------------------------------------------- */ buf = (void *)HDmalloc((size_t)(nelmts * msize)); @@ -460,9 +482,9 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, if (H5Aread(attr_id, wtype_id, buf) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aread failed"); - /*------------------------------------------------------------------------- + /*----------------------------------------------------------------- * copy - *------------------------------------------------------------------------- + *----------------------------------------------------------------- */ if ((attr_out = H5Acreate2(loc_out, name, wtype_id, space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) @@ -485,9 +507,9 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, if (options->verbose) HDprintf(FORMAT_OBJ_ATTR, "attr", name); - /*------------------------------------------------------------------------- + /*--------------------------------------------------------------------- * close - *------------------------------------------------------------------------- + *--------------------------------------------------------------------- */ if (H5Sclose(space_id) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); @@ -501,19 +523,18 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, if (H5Aclose(attr_id) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aclose failed"); attr_id = -1; - } /* for u */ + } /* for u (each attribute) */ done: H5E_BEGIN_TRY { if (buf) { - /* Check if we have VL data and string in the attribute's datatype that must - * be reclaimed */ + /* Check if we have VL data and string in the attribute's + * datatype that must be reclaimed + */ if (TRUE == h5tools_detect_vlen(wtype_id)) H5Dvlen_reclaim(wtype_id, space_id, H5P_DEFAULT, buf); - - /* Free buf */ HDfree(buf); - } /* end if */ + } H5Aclose(attr_out); H5Sclose(space_id); @@ -525,25 +546,27 @@ done: return ret_value; } /* end copy_attr() */ -/*------------------------------------------------------------------------- +/*----------------------------------------------------------------------------- * Function: check_options * * Purpose: print options, checks for invalid options * * Return: void, return -1 on error - *------------------------------------------------------------------------- + *----------------------------------------------------------------------------- */ -static int check_options(pack_opt_t *options) { +static int +check_options(pack_opt_t *options) +{ int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ unsigned int i; int k, j, has_cp = 0, has_ck = 0; char slayout[30]; /*------------------------------------------------------------------------- - * objects to layout - *------------------------------------------------------------------------- - */ - if (options->verbose && have_request(options) /* only print if requested */) { + * Objects to layout + *------------------------------------------------------------------------- + */ + if (options->verbose && have_request(options)) { if (options->all_layout == 1) { HDprintf("All objects to modify layout are...\n"); switch (options->layout_g) { @@ -577,7 +600,7 @@ static int check_options(pack_opt_t *options) { } else HDprintf("No all objects to modify layout\n"); - }/* verbose */ + } /* end if verbose */ for (i = 0; i < options->op_tbl->nelems; i++) { char* name = options->op_tbl->objs[i].path; @@ -591,22 +614,23 @@ static int check_options(pack_opt_t *options) { } has_ck = 1; } - else if (options->op_tbl->objs[i].chunk.rank == -2) { + else if (options->op_tbl->objs[i].chunk.rank == -2) { /* TODO: replace 'magic number' */ if (options->verbose) HDprintf(" <%s> %s\n", name, "NONE (contiguous)"); has_ck = 1; } - } + } /* end for each object in options */ if (options->all_layout == 1 && has_ck) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid chunking input: 'all' option is present with other objects"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "invalid chunking input: 'all' option is present with other objects"); /*------------------------------------------------------------------------- - * objects to filter - *------------------------------------------------------------------------- - */ + * Objects to filter + *------------------------------------------------------------------------- + */ - if (options->verbose && have_request(options) /* only print if requested */) { + if (options->verbose && have_request(options)) { if (options->all_filter == 1) { HDprintf("All objects to apply filter are...\n"); for (k = 0; k < options->n_filter_g; k++) { @@ -630,12 +654,12 @@ static int check_options(pack_opt_t *options) { default: HDprintf(" User Defined %d\n", filtn); break; - } /* k */ - }; - } + } /* end switch */ + } /* end for each filter */ + } /* end if options->all_filter == 1 (TODO: meaning) */ else HDprintf("No all objects to apply filter\n"); - } /* verbose */ + } /* end if verbose */ for (i = 0; i < options->op_tbl->nelems; i++) { pack_info_t pack = options->op_tbl->objs[i]; @@ -643,39 +667,51 @@ static int check_options(pack_opt_t *options) { for (j = 0; j < pack.nfilters; j++) { if (options->verbose) { - if(pack.filter[j].filtn >= 0) { - if(pack.filter[j].filtn > H5Z_FILTER_SCALEOFFSET) - HDprintf(" <%s> with %s filter %d\n", name, get_sfilter(pack.filter[j].filtn), pack.filter[j].filtn); - else - HDprintf(" <%s> with %s filter\n", name, get_sfilter(pack.filter[j].filtn)); + if (pack.filter[j].filtn >= 0) { + if (pack.filter[j].filtn > H5Z_FILTER_SCALEOFFSET) { + HDprintf(" <%s> with %s filter %d\n", name, + get_sfilter(pack.filter[j].filtn), + pack.filter[j].filtn); + } + else { + HDprintf(" <%s> with %s filter\n", + name, + get_sfilter(pack.filter[j].filtn)); + } } } has_cp = 1; - } /* j */ - } /* i */ + } /* end for each filter */ + } /* end for each object in options table */ if (options->all_filter == 1 && has_cp) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid compression input: 'all' option is present with other objects"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "invalid compression input: 'all' option is present with " \ + "other objects"); /*------------------------------------------------------------------------- - * check options for the latest format - *------------------------------------------------------------------------- - */ + * Check options for the latest format + *------------------------------------------------------------------------- + */ if (options->grp_compact < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid maximum number of links to store as header messages"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "invalid maximum number of links to store as header messages"); if (options->grp_indexed < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid minimum number of links to store in the indexed format"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "invalid minimum number of links to store in indexed format"); if (options->grp_indexed > options->grp_compact) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "minimum indexed size is greater than the maximum compact size"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "minimum indexed size is greater than maximum compact size"); for (i = 0; i < 8; i++) if (options->msg_size[i] < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid shared message size"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "invalid shared message size"); - /*-------------------------------------------------------------------------------- - * verify new user userblock options; file name must be present - *--------------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------ + * Verify new user userblock options; file name must be present + *------------------------------------------------------------------------ + */ if (options->ublock_filename != NULL && options->ublock_size == 0) { if (options->verbose) { HDprintf("Warning: user block size missing for file %s. Assigning a default size of 1024...\n", options->ublock_filename); @@ -684,37 +720,41 @@ static int check_options(pack_opt_t *options) { } if (options->ublock_filename == NULL && options->ublock_size != 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file name missing for user block", options->ublock_filename); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "file name missing for user block", options->ublock_filename); - /*-------------------------------------------------------------------------------- - * verify alignment options; threshold is zero default but alignment not - *--------------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------ + * Verify alignment options; threshold is zero default but alignment not + *------------------------------------------------------------------------ + */ if (options->alignment == 0 && options->threshold != 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "alignment for H5Pset_alignment missing"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "alignment for H5Pset_alignment missing"); done: return ret_value; -} +} /* end check_options() */ /*------------------------------------------------------------------------- * Function: check_objects * - * Purpose: locate all HDF5 objects in the file and compare with user - * supplied list + * Purpose: Locate all HDF5 objects in the file and compare with user-supplied + * list. * * Return: 0, ok, -1 no *------------------------------------------------------------------------- */ -static int check_objects(const char* fname, pack_opt_t *options) { - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ +static int +check_objects(const char* fname, pack_opt_t *options) +{ hid_t fid = -1; hid_t did = -1; hid_t sid = -1; unsigned int i; int ifil; trav_table_t *travt = NULL; + int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ /* nothing to do */ if (options->op_tbl->nelems == 0) @@ -725,7 +765,8 @@ static int check_objects(const char* fname, pack_opt_t *options) { *------------------------------------------------------------------------- */ if ((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR); /*------------------------------------------------------------------------- * get the list of objects in the file @@ -734,7 +775,6 @@ static int check_objects(const char* fname, pack_opt_t *options) { /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); - /* init table */ trav_table_init(&travt); /* get the list of objects in the file */ @@ -750,65 +790,74 @@ static int check_objects(const char* fname, pack_opt_t *options) { HDprintf("Opening file. Searching %zu objects to modify ...\n", travt->nobjs); for (i = 0; i < options->op_tbl->nelems; i++) { - char* name = options->op_tbl->objs[i].path; + pack_info_t obj = options->op_tbl->objs[i]; + char* name = obj.path; + if (options->verbose) HDprintf(" <%s>", name); /* the input object names are present in the file and are valid */ if (h5trav_getindext(name, travt) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "%s Could not find <%s> in file <%s>. Exiting...\n", + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "%s Could not find <%s> in file <%s>. Exiting...\n", (options->verbose ? "\n" : ""), name, fname); if (options->verbose) HDprintf("...Found\n"); - for (ifil = 0; ifil < options->op_tbl->objs[i].nfilters; ifil++) { - if (options->op_tbl->objs[i].filter[ifil].filtn < 0) + for (ifil = 0; ifil < obj.nfilters; ifil++) { + if (obj.filter[ifil].filtn < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid filter"); /* check for extra filter conditions */ - switch (options->op_tbl->objs[i].filter[ifil].filtn) { + switch (obj.filter[ifil].filtn) { /* chunk size must be smaller than pixels per block */ case H5Z_FILTER_SZIP: { int j; hsize_t csize = 1; - unsigned ppb = options->op_tbl->objs[i].filter[ifil].cd_values[0]; + unsigned ppb = obj.filter[ifil].cd_values[0]; hsize_t dims[H5S_MAX_RANK]; int rank; - if (options->op_tbl->objs[i].chunk.rank > 0) { - rank = options->op_tbl->objs[i].chunk.rank; + if (obj.chunk.rank > 0) { + rank = obj.chunk.rank; for (j = 0; j < rank; j++) - csize *= options->op_tbl->objs[i].chunk.chunk_lengths[j]; + csize *= obj.chunk.chunk_lengths[j]; } else { if ((did = H5Dopen2(fid, name, H5P_DEFAULT)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Dopen2 failed"); if ((sid = H5Dget_space(did)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Dget_space failed"); if ((rank = H5Sget_simple_extent_ndims(sid)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Sget_simple_extent_ndims failed"); HDmemset(dims, 0, sizeof dims); if (H5Sget_simple_extent_dims(sid, dims, NULL) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Sget_simple_extent_dims failed"); for (j = 0; j < rank; j++) csize *= dims[j]; if (H5Sclose(sid) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed"); + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Sclose failed"); if (H5Dclose(did) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); - } + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, + "H5Dclose failed"); + } /* end else (chunk rank is 0) */ if (csize < ppb) { HDprintf(" <warning: SZIP settings, chunk size is smaller than pixels per block>\n"); HGOTO_DONE(0); } - } + } /* end case SZIP */ break; default: break; - } - } /* for ifil */ - } /* for i */ + } /* end switch */ + } /* for ifil (each user-defined filter) */ + } /* for i (each object in options traversal table) */ done: H5E_BEGIN_TRY { @@ -819,7 +868,7 @@ done: if (travt) trav_table_free(travt); return ret_value; -} +} /* end check_objects() */ /*------------------------------------------------------------------------- * Function: have_request @@ -829,14 +878,15 @@ done: * Return: 1 yes, 0 no *------------------------------------------------------------------------- */ -static int have_request(pack_opt_t *options) { +static int +have_request(pack_opt_t *options) +{ if (options->all_filter || options->all_layout || options->op_tbl->nelems) return 1; return 0; - -} +} /* end have_request() */ /*------------------------------------------------------------------------- * Function: get_sfilter @@ -846,8 +896,9 @@ static int have_request(pack_opt_t *options) { * Return: name of filter, exit on error *------------------------------------------------------------------------- */ - -static const char* get_sfilter(H5Z_filter_t filtn) { +static const char * +get_sfilter(H5Z_filter_t filtn) +{ if (filtn < 0) return NULL; else if (filtn == H5Z_FILTER_NONE) @@ -866,5 +917,5 @@ static const char* get_sfilter(H5Z_filter_t filtn) { return "SOFF"; else return "UD"; -} +} /* end get_sfilter() */ diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c index 13adb7c..398d632 100644 --- a/tools/src/h5repack/h5repack_copy.c +++ b/tools/src/h5repack/h5repack_copy.c @@ -58,8 +58,8 @@ static void print_user_block(const char *filename, hid_t fid); * -1 no *------------------------------------------------------------------------- */ - -int copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) +int +copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options) { int ret_value = 0; hid_t fidin = -1; @@ -365,7 +365,7 @@ done: trav_table_free(travt); return ret_value; -} +} /* end copy_objects() */ /*------------------------------------------------------------------------- * Function: Get_hyperslab @@ -521,7 +521,7 @@ Get_hyperslab(hid_t dcpl_id, int rank_dset, hsize_t dims_dset[], done: return ret_value; -} +} /* end Get_hyperslab() */ /*------------------------------------------------------------------------- * Function: do_copy_objects @@ -577,7 +577,8 @@ done: *------------------------------------------------------------------------- */ -int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, +int +do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, pack_opt_t *options) /* repack options */ { int ret_value = 0; @@ -677,7 +678,11 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, } else { if (options->grp_compact > 0 || options->grp_indexed > 0) - if (H5Pset_link_phase_change(gcpl_out, (unsigned) options->grp_compact, (unsigned) options->grp_indexed) < 0) + if (H5Pset_link_phase_change( + gcpl_out, + (unsigned) options->grp_compact, + (unsigned) options->grp_indexed) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_link_phase_change failed"); if ((grp_out = H5Gcreate2(fidout, travt->objs[i].name, H5P_DEFAULT, gcpl_out, H5P_DEFAULT)) < 0) @@ -777,8 +782,6 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_type failed"); if ((dcpl_in = H5Dget_create_plist(dset_in)) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_create_plist failed"); - if ((dcpl_out = H5Pcopy(dcpl_in)) < 0) - HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); if ((rank = H5Sget_simple_extent_ndims(f_space_id)) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); HDmemset(dims, 0, sizeof dims); @@ -787,6 +790,20 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (H5Dget_space_status(dset_in, &space_status) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space_status failed"); + /* If the input dataset has external storage, it must be contiguous. + * Accordingly, there would be no filter or chunk properties to preserve, + * so create a new DCPL. + * Otherwise, copy dcpl_in. + */ + if (H5Pget_external_count(dcpl_in)) { + if ((dcpl_out = H5Pcreate(H5P_DATASET_CREATE)) < 0) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcreate failed"); + } + else + if ((dcpl_out = H5Pcopy(dcpl_in)) < 0) { + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pcopy failed"); + } + nelmts = 1; for (j = 0; j < rank; j++) nelmts *= dims[j]; @@ -797,7 +814,7 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, wtype_id = H5Tget_native_type(ftype_id, H5T_DIR_DEFAULT); else wtype_id = H5Tcopy(ftype_id); - } /* end if */ + } if ((msize = H5Tget_size(wtype_id)) == 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); @@ -830,18 +847,29 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, * changing to COMPACT. For the reference, COMPACT is limited * by size 64K by library. */ - if (options->layout_g != H5D_COMPACT) - if (size_dset < options->min_comp) + if (options->layout_g != H5D_COMPACT) { + if (size_dset < options->min_comp) { apply_s = 0; + } + } /* apply the filter */ - if (apply_s) - if (apply_filters(travt->objs[i].name, rank, dims, msize, dcpl_out, options, &has_filter) < 0) + if (apply_s) { + if (apply_filters( + travt->objs[i].name, + rank, + dims, + msize, + dcpl_out, + options, + &has_filter) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "apply_filters failed"); + } /* only if layout change requested for entire file or * individual obj */ - if (options->all_layout > 0 || req_obj_layout == 1) + if (options->all_layout > 0 || req_obj_layout == 1) { /*------------------------------------------------- * Unset the unlimited max dims if convert to other * than chunk layouts, because unlimited max dims @@ -861,14 +889,14 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, /* if convert to COMPACT */ if (options->layout_g == H5D_COMPACT) - /* should be smaller than 64K */ if (size_dset > MAX_COMPACT_DSIZE) limit_maxdims = FALSE; /* unset unlimited max dims */ if (limit_maxdims) H5Sset_extent_simple(f_space_id, rank, dims, NULL); - } + } /* end if not chunked */ + } /* end if layout change requested for entire file or individual object */ /*------------------------------------------------------------------------- * create the output dataset; @@ -876,16 +904,39 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, * modified dcpl; in that case use the original instead *------------------------------------------------------------------------- */ - dset_out = H5Dcreate2(fidout, travt->objs[i].name, wtype_id, f_space_id, H5P_DEFAULT, dcpl_out, H5P_DEFAULT); - if (dset_out == FAIL) { - H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, "H5Dcreate2 failed"); - if (options->verbose) - HDprintf(" warning: could not create dataset <%s>. Applying original settings\n", travt->objs[i].name); - - if ((dset_out = H5Dcreate2(fidout, travt->objs[i].name, wtype_id, f_space_id, H5P_DEFAULT, dcpl_in, H5P_DEFAULT)) < 0) + dset_out = H5Dcreate2(fidout, + travt->objs[i].name, + wtype_id, + f_space_id, + H5P_DEFAULT, + dcpl_out, + H5P_DEFAULT); + /* if unable to create, retry with original DCPL */ + if (dset_out < 0) { + H5Epush2(H5tools_ERR_STACK_g, + __FILE__, + FUNC, + __LINE__, + H5tools_ERR_CLS_g, + H5E_tools_g, + H5E_tools_min_id_g, + "H5Dcreate2 failed"); + if (options->verbose) { + HDprintf(" warning: could not create dataset <%s>. Applying original settings\n", + travt->objs[i].name); + } + dset_out = H5Dcreate2( + fidout, + travt->objs[i].name, + wtype_id, + f_space_id, + H5P_DEFAULT, + dcpl_in, + H5P_DEFAULT); + if (dset_out < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dcreate2 failed"); apply_f = 0; - } + } /* end if retry dataset create */ /*------------------------------------------------------------------------- * read/write @@ -909,8 +960,8 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (TRUE == H5Tdetect_class(wtype_id, H5T_VLEN)) if (H5Dvlen_reclaim(wtype_id, f_space_id, H5P_DEFAULT, buf) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dvlen_reclaim failed"); - /* free */ - if (buf != NULL) { + + if (buf != NULL) { /* TODO: is buf potentially released by H5Dvlen_reclaim()? */ HDfree(buf); buf = NULL; } @@ -946,17 +997,25 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, dset_layout = H5Pget_layout(dcpl_out); if (dset_layout == H5D_CHUNKED) dcpl_tmp = dcpl_out; /* writing dataset */ - else { /* if reading dataset is chunked */ + else { dset_layout = H5Pget_layout(dcpl_in); if (dset_layout == H5D_CHUNKED) dcpl_tmp = dcpl_in; /* reading dataset */ } - /* get hyperslab dims and size in byte */ - if (Get_hyperslab(dcpl_tmp, rank, dims, p_type_nbytes, hslab_dims, &hslab_nbytes) < 0) + if (Get_hyperslab( + dcpl_tmp, + rank, + dims, + p_type_nbytes, + hslab_dims, + &hslab_nbytes) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Get_hyperslab failed"); hslab_buf = HDmalloc((size_t)hslab_nbytes); + if (hslab_buf == NULL) + HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "can't allocate space for hyperslab"); hslab_nelmts = hslab_nbytes / p_type_nbytes; hslab_space = H5Screate_simple(1, &hslab_nelmts, NULL); @@ -974,28 +1033,57 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, */ for (k = 0, hs_select_nelmts = 1; k < rank; k++) { /* MIN() is used to get the remaining edge portion if exist. - * "dims[k] - hs_sel_offset[k]" is remaining edge portion that is smaller then the hyperslab.*/ + * "dims[k] - hs_sel_offset[k]" is remaining edge portion that is + * smaller then the hyperslab. + */ hs_sel_count[k] = MIN(dims[k] - hs_sel_offset[k], hslab_dims[k]); hs_select_nelmts *= hs_sel_count[k]; } - if (H5Sselect_hyperslab(f_space_id, H5S_SELECT_SET, hs_sel_offset, NULL, hs_sel_count, NULL) < 0) + if (H5Sselect_hyperslab( + f_space_id, + H5S_SELECT_SET, + hs_sel_offset, + NULL, + hs_sel_count, + NULL) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); - if (H5Sselect_hyperslab(hslab_space, H5S_SELECT_SET, zero, NULL, &hs_select_nelmts, NULL) < 0) + if (H5Sselect_hyperslab( + hslab_space, + H5S_SELECT_SET, + zero, + NULL, + &hs_select_nelmts, + NULL) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed"); - } + } /* end if rank > 0 */ else { H5Sselect_all(f_space_id); H5Sselect_all(hslab_space); hs_select_nelmts = 1; - } /* rank */ - - if(H5Dread(dset_in, wtype_id, hslab_space, f_space_id, H5P_DEFAULT, hslab_buf) < 0) + } /* end (else) rank == 0 */ + + if (H5Dread( + dset_in, + wtype_id, + hslab_space, + f_space_id, + H5P_DEFAULT, + hslab_buf) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed"); - if(H5Dwrite(dset_out, wtype_id, hslab_space, f_space_id, H5P_DEFAULT, hslab_buf) < 0) + if (H5Dwrite( + dset_out, + wtype_id, + hslab_space, + f_space_id, + H5P_DEFAULT, + hslab_buf) + < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dwrite failed"); - /* reclaim any VL memory, if necessary */ if (vl_data) H5Dvlen_reclaim(wtype_id, hslab_space, H5P_DEFAULT, hslab_buf); @@ -1007,20 +1095,19 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, hs_sel_offset[k - 1] = 0; else carry = 0; - } /* k */ - } /* elmtno */ + } + } /* end for (hyperslab selection loop) */ H5Sclose(hslab_space); - /* free */ if (hslab_buf != NULL) { HDfree(hslab_buf); hslab_buf = NULL; } - } /* hyperslab read */ - } /* if (nelmts>0 && space_status==H5D_SPACE_STATUS_NOT_ALLOCATED) */ + } /* end if reading/writing by hyperslab */ + } /* end if (nelmts > 0 && space_status != H5D_SPACE_STATUS_NOT_ALLOCATED) */ /*------------------------------------------------------------------------- - * amount of compression used + * print amount of compression used *------------------------------------------------------------------------- */ if (options->verbose) { @@ -1040,14 +1127,17 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, print_dataset_info(dcpl_in, travt->objs[i].name, ratio, 0); /* print a message that the filter was not applied - (in case there was a filter) + * (in case there was a filter) */ - if (has_filter && apply_s == 0) - HDprintf(" <warning: filter not applied to %s. dataset smaller than %d bytes>\n", travt->objs[i].name, (int) options->min_comp); + if (has_filter && apply_s == 0) { + HDprintf(" <warning: filter not applied to %s. dataset smaller than %d bytes>\n", + travt->objs[i].name, + (int) options->min_comp); + } if (has_filter && apply_f == 0) HDprintf(" <warning: could not apply the filter to %s>\n", travt->objs[i].name); - } /* verbose */ + } /* end if verbose (print compression) */ /*------------------------------------------------------------------------- * copy attrs @@ -1056,14 +1146,13 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_attr failed"); - /*close */ if (H5Dclose(dset_out) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); - }/*!H5T_REFERENCE*/ - }/*h5tools_canreadf*/ + } /* end if not a reference */ + } /* end if h5tools_canreadf (filter availability check) */ /*------------------------------------------------------------------------- - * close + * Close *------------------------------------------------------------------------- */ if (H5Tclose(ftype_id) < 0) @@ -1080,7 +1169,7 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed"); } /*------------------------------------------------------------------------- - * we do not have request for filter/chunking use H5Ocopy instead + * We do not have request for filter/chunking; use H5Ocopy instead *------------------------------------------------------------------------- */ else { @@ -1094,11 +1183,6 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (H5Pset_copy_object(pid, H5O_COPY_WITHOUT_ATTR_FLAG) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pset_copy_object failed"); - /*------------------------------------------------------------------------- - * do the copy - *------------------------------------------------------------------------- - */ - if (H5Ocopy(fidin, /* Source file or group identifier */ travt->objs[i].name, /* Name of the source object to be copied */ fidout, /* Destination file or group identifier */ @@ -1107,12 +1191,11 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, H5P_DEFAULT) < 0) /* Properties which apply to the new hard link */ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Ocopy failed"); - /* close property */ if (H5Pclose(pid) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed"); /*------------------------------------------------------------------------- - * copy attrs manually + * Copy attrs manually *------------------------------------------------------------------------- */ if ((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0) @@ -1129,7 +1212,7 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, if (options->verbose) HDprintf(FORMAT_OBJ, "dset", travt->objs[i].name); - } /* end do we have request for filter/chunking */ + } /* end whether we have request for filter/chunking */ break; /*------------------------------------------------------------------------- @@ -1189,8 +1272,8 @@ int do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt, default: HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Object type not found"); } /* switch */ - } /* end for */ - } /* end if */ + } /* end for each object to traverse */ + } /* end if there are objects */ done: @@ -1228,7 +1311,7 @@ done: HDfree(hslab_buf); return ret_value; -} +} /* end do_copy_objects() */ /*------------------------------------------------------------------------- * Function: print_dataset_info @@ -1322,8 +1405,8 @@ print_dataset_info(hid_t dcpl_id, char *objname, double ratio, int pr) default: HDstrcat(strfilter, "UD "); break; - } /* switch */ - }/*i*/ + } /* end switch */ + } /* end for each filter */ if (!pr) HDprintf(FORMAT_OBJ, "dset", objname); @@ -1336,7 +1419,7 @@ print_dataset_info(hid_t dcpl_id, char *objname, double ratio, int pr) HDstrcat(str, temp); HDprintf(FORMAT_OBJ, str, objname); } -} +} /* end print_dataset_info() */ /*------------------------------------------------------------------------- * Function: copy_user_block @@ -1406,7 +1489,7 @@ done: HDclose(outfid); return ret_value; -} +} /* end copy_user_block() */ /*------------------------------------------------------------------------- * Function: print_user_block @@ -1479,6 +1562,6 @@ done: HDclose(fh); return; -} +} /* end print_user_block() */ #endif diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c index dec25f9..8c887a2 100644 --- a/tools/src/h5repack/h5repack_main.c +++ b/tools/src/h5repack/h5repack_main.c @@ -23,7 +23,8 @@ static void leave(int ret) H5_ATTR_NORETURN; /* module-scoped variables */ -static int has_i_o = 0; +static int has_i = 0; +static int has_o = 0; const char *infile = NULL; const char *outfile = NULL; @@ -33,34 +34,34 @@ const char *outfile = NULL; */ static const char *s_opts = "hVvf:l:m:e:nLj:k:c:d:s:u:b:M:t:a:i:o:S:P:T:G:q:z:E"; static struct long_options l_opts[] = { - { "help", no_arg, 'h' }, - { "version", no_arg, 'V' }, - { "verbose", no_arg, 'v' }, - { "filter", require_arg, 'f' }, - { "layout", require_arg, 'l' }, - { "minimum", require_arg, 'm' }, - { "file", require_arg, 'e' }, - { "native", no_arg, 'n' }, - { "latest", no_arg, 'L' }, - { "low", require_arg, 'j' }, - { "high", require_arg, 'k' }, - { "compact", require_arg, 'c' }, - { "indexed", require_arg, 'd' }, - { "ssize", require_arg, 's' }, - { "ublock", require_arg, 'u' }, - { "block", require_arg, 'b' }, + { "help", no_arg, 'h' }, + { "version", no_arg, 'V' }, + { "verbose", no_arg, 'v' }, + { "filter", require_arg, 'f' }, + { "layout", require_arg, 'l' }, + { "minimum", require_arg, 'm' }, + { "file", require_arg, 'e' }, + { "native", no_arg, 'n' }, + { "latest", no_arg, 'L' }, + { "low", require_arg, 'j' }, + { "high", require_arg, 'k' }, + { "compact", require_arg, 'c' }, + { "indexed", require_arg, 'd' }, + { "ssize", require_arg, 's' }, + { "ublock", require_arg, 'u' }, + { "block", require_arg, 'b' }, { "metadata_block_size", require_arg, 'M' }, - { "threshold", require_arg, 't' }, - { "alignment", require_arg, 'a' }, - { "infile", require_arg, 'i' }, /* -i for backward compability */ - { "outfile", require_arg, 'o' }, /* -o for backward compability */ - { "fs_strategy", require_arg, 'S' }, - { "fs_persist", require_arg, 'P' }, - { "fs_threshold", require_arg, 'T' }, - { "fs_pagesize", require_arg, 'G' }, - { "sort_by", require_arg, 'q' }, - { "sort_order", require_arg, 'z' }, - { "enable-error-stack", no_arg, 'E' }, + { "threshold", require_arg, 't' }, + { "alignment", require_arg, 'a' }, + { "infile", require_arg, 'i' }, /* for backward compability */ + { "outfile", require_arg, 'o' }, /* for backward compability */ + { "fs_strategy", require_arg, 'S' }, + { "fs_persist", require_arg, 'P' }, + { "fs_threshold", require_arg, 'T' }, + { "fs_pagesize", require_arg, 'G' }, + { "sort_by", require_arg, 'q' }, + { "sort_order", require_arg, 'z' }, + { "enable-error-stack", no_arg, 'E' }, { NULL, 0, '\0' } }; @@ -83,13 +84,17 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " -v, --verbose Verbose mode, print object information\n"); PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n"); PRINTVALSTREAM(rawoutstream, " -n, --native Use a native HDF5 type when repacking\n"); - PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they occur\n"); + PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n"); + PRINTVALSTREAM(rawoutstream, " occur\n"); PRINTVALSTREAM(rawoutstream, " -L, --latest Use latest version of file format\n"); - PRINTVALSTREAM(rawoutstream, " This option will take precedence over the -j and -k options\n"); - PRINTVALSTREAM(rawoutstream, " --low=BOUND The low bound for library release versions to use when creating\n"); - PRINTVALSTREAM(rawoutstream, " objects in the file (default is H5F_LIBVER_EARLIEST)\n"); - PRINTVALSTREAM(rawoutstream, " --high=BOUND The high bound for library release versions to use when creating\n"); - PRINTVALSTREAM(rawoutstream, " objects in the file (default is H5F_LIBVER_LATEST)\n"); + PRINTVALSTREAM(rawoutstream, " This option will take precedence over the options\n"); + PRINTVALSTREAM(rawoutstream, " --low and --high\n"); + PRINTVALSTREAM(rawoutstream, " --low=BOUND The low bound for library release versions to use\n"); + PRINTVALSTREAM(rawoutstream, " when creating objects in the file\n"); + PRINTVALSTREAM(rawoutstream, " (default is H5F_LIBVER_EARLIEST)\n"); + PRINTVALSTREAM(rawoutstream, " --high=BOUND The high bound for library release versions to use\n"); + PRINTVALSTREAM(rawoutstream, " when creating objects in the file\n"); + PRINTVALSTREAM(rawoutstream, " (default is H5F_LIBVER_LATEST)\n"); PRINTVALSTREAM(rawoutstream, " -c L1, --compact=L1 Maximum number of links in header messages\n"); PRINTVALSTREAM(rawoutstream, " -d L2, --indexed=L2 Minimum number of links in the indexed format\n"); PRINTVALSTREAM(rawoutstream, " -s S[:F], --ssize=S[:F] Shared object header message minimum size\n"); @@ -104,10 +109,14 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " -z Z, --sort_order=Z Sort groups and attributes by order Z\n"); PRINTVALSTREAM(rawoutstream, " -f FILT, --filter=FILT Filter type\n"); PRINTVALSTREAM(rawoutstream, " -l LAYT, --layout=LAYT Layout type\n"); - PRINTVALSTREAM(rawoutstream, " -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for H5Pset_file_space_strategy\n"); - PRINTVALSTREAM(rawoutstream, " -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free-space for H5Pset_file_space_strategy\n"); - PRINTVALSTREAM(rawoutstream, " -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold for H5Pset_file_space_strategy\n"); - PRINTVALSTREAM(rawoutstream, " -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for H5Pset_file_space_page_size\n"); + PRINTVALSTREAM(rawoutstream, " -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for\n"); + PRINTVALSTREAM(rawoutstream, " H5Pset_file_space_strategy\n"); + PRINTVALSTREAM(rawoutstream, " -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free-\n"); + PRINTVALSTREAM(rawoutstream, " space for H5Pset_file_space_strategy\n"); + PRINTVALSTREAM(rawoutstream, " -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold\n"); + PRINTVALSTREAM(rawoutstream, " for H5Pset_file_space_strategy\n"); + PRINTVALSTREAM(rawoutstream, " -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for\n"); + PRINTVALSTREAM(rawoutstream, " H5Pset_file_space_page_size\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " M - is an integer greater than 1, size of dataset in bytes (default is 0)\n"); PRINTVALSTREAM(rawoutstream, " E - is a filename.\n"); @@ -115,40 +124,50 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " U - is a filename.\n"); PRINTVALSTREAM(rawoutstream, " T - is an integer\n"); PRINTVALSTREAM(rawoutstream, " A - is an integer greater than zero\n"); - PRINTVALSTREAM(rawoutstream, " Q - is the sort index type for the input file. It can be \"name\" or \"creation_order\" (default)\n"); - PRINTVALSTREAM(rawoutstream, " Z - is the sort order type for the input file. It can be \"descending\" or \"ascending\" (default)\n"); + PRINTVALSTREAM(rawoutstream, " Q - is the sort index type for the input file. It can be \"name\" or\n"); + PRINTVALSTREAM(rawoutstream, " \"creation_order\" (default)\n"); + PRINTVALSTREAM(rawoutstream, " Z - is the sort order type for the input file. It can be \"descending\" or\n"); + PRINTVALSTREAM(rawoutstream, " \"ascending\" (default)\n"); PRINTVALSTREAM(rawoutstream, " B - is the user block size, any value that is 512 or greater and is\n"); PRINTVALSTREAM(rawoutstream, " a power of 2 (1024 default)\n"); PRINTVALSTREAM(rawoutstream, " F - is the shared object header message type, any of <dspace|dtype|fill|\n"); PRINTVALSTREAM(rawoutstream, " pline|attr>. If F is not specified, S applies to all messages\n"); PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, " BOUND is an integer indicating the library release versions to use when creating\n"); - PRINTVALSTREAM(rawoutstream, " objects in the file (see H5Pset_libver_bounds()):\n"); + PRINTVALSTREAM(rawoutstream, " BOUND is an integer indicating the library release versions to use when\n"); + PRINTVALSTREAM(rawoutstream, " creating objects in the file (see H5Pset_libver_bounds()):\n"); PRINTVALSTREAM(rawoutstream, " 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct\n"); PRINTVALSTREAM(rawoutstream, " 1: This is H5F_LIBVER_V18 in H5F_libver_t struct\n"); PRINTVALSTREAM(rawoutstream, " 2: This is H5F_LIBVER_V110 in H5F_libver_t struct\n"); - PRINTVALSTREAM(rawoutstream, " (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V110 for this release\n"); + PRINTVALSTREAM(rawoutstream, " 3: This is H5F_LIBVER_V112 in H5F_libver_t struct\n"); + PRINTVALSTREAM(rawoutstream, " (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V112 for this release\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " FS_STRATEGY is a string indicating the file space strategy used:\n"); PRINTVALSTREAM(rawoutstream, " FSM_AGGR:\n"); - PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are free-space managers, aggregators and virtual file driver.\n"); + PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are free-space\n"); + PRINTVALSTREAM(rawoutstream, " managers, aggregators and virtual file driver.\n"); PRINTVALSTREAM(rawoutstream, " PAGE:\n"); - PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are free-space managers with embedded paged aggregation and virtual file driver.\n"); + PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are free-space\n"); + PRINTVALSTREAM(rawoutstream, " managers with embedded paged aggregation and virtual file driver.\n"); PRINTVALSTREAM(rawoutstream, " AGGR:\n"); - PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are aggregators and virtual file driver.\n"); + PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are aggregators and\n"); + PRINTVALSTREAM(rawoutstream, " virtual file driver.\n"); PRINTVALSTREAM(rawoutstream, " NONE:\n"); - PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are virtual file driver.\n"); - PRINTVALSTREAM(rawoutstream, " The default strategy when not set is FSM_AGGR without persisting free-space.\n"); + PRINTVALSTREAM(rawoutstream, " The mechanisms used in managing file space are virtual file\n"); + PRINTVALSTREAM(rawoutstream, " driver.\n"); + PRINTVALSTREAM(rawoutstream, " The default strategy when not set is FSM_AGGR without persisting free-\n"); + PRINTVALSTREAM(rawoutstream, " space.\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " FS_PERSIST is 1 to persisting free-space or 0 to not persisting free-space.\n"); PRINTVALSTREAM(rawoutstream, " The default when not set is not persisting free-space.\n"); PRINTVALSTREAM(rawoutstream, " The value is ignored for AGGR and NONE strategies.\n"); PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, " FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be tracked by the library.\n"); + PRINTVALSTREAM(rawoutstream, " FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be\n"); + PRINTVALSTREAM(rawoutstream, " tracked by the library.\n"); PRINTVALSTREAM(rawoutstream, " The default when not set is 1.\n"); PRINTVALSTREAM(rawoutstream, " The value is ignored for AGGR and NONE strategies.\n"); PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, " FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when the file space strategy PAGE is used.\n"); + PRINTVALSTREAM(rawoutstream, " FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when\n"); + PRINTVALSTREAM(rawoutstream, " the file space strategy PAGE is used.\n"); PRINTVALSTREAM(rawoutstream, " The default when not set is 4096.\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " FILT - is a string with the format:\n"); @@ -176,9 +195,9 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, " NBIT (no parameter)\n"); PRINTVALSTREAM(rawoutstream, " SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type\n"); PRINTVALSTREAM(rawoutstream, " is either IN or DS\n"); - PRINTVALSTREAM(rawoutstream, " UD=<filter_number,filter_flag,cd_value_count,value_1[,value_2,...,value_N]>\n"); - PRINTVALSTREAM(rawoutstream, " required values for filter_number,filter_flag,cd_value_count,value_1\n"); - PRINTVALSTREAM(rawoutstream, " optional values for value_2 to value_N\n"); + PRINTVALSTREAM(rawoutstream, " UD=<filter_number,filter_flag,cd_value_count,value1[,value2,...,valueN]>\n"); + PRINTVALSTREAM(rawoutstream, " Required values: filter_number, filter_flag, cd_value_count, value1\n"); + PRINTVALSTREAM(rawoutstream, " Optional values: value2 to valueN\n"); PRINTVALSTREAM(rawoutstream, " NONE (no parameter)\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " LAYT - is a string with the format:\n"); @@ -215,12 +234,12 @@ static void usage(const char *prog) { PRINTVALSTREAM(rawoutstream, "4) h5repack -L -c 10 -s 20:dtype file1 file2\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, " Using latest file format with maximum compact group size of 10 and\n"); - PRINTVALSTREAM(rawoutstream, " and minimum shared datatype size of 20\n"); + PRINTVALSTREAM(rawoutstream, " minimum shared datatype size of 20\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, "5) h5repack --low=0 --high=1 file1 file2\n"); PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, " Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via H5Pset_libver_bounds() when\n"); - PRINTVALSTREAM(rawoutstream, " creating the repacked file: file2\n"); + PRINTVALSTREAM(rawoutstream, " Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via\n"); + PRINTVALSTREAM(rawoutstream, " H5Pset_libver_bounds() when creating the repacked file, file2\n"); PRINTVALSTREAM(rawoutstream, "\n"); PRINTVALSTREAM(rawoutstream, "5) h5repack -f SHUF -f GZIP=1 file1 file2\n"); PRINTVALSTREAM(rawoutstream, "\n"); @@ -264,7 +283,7 @@ int read_info(const char *filename, pack_opt_t *options) int i, rc = 1; int ret_value = EXIT_SUCCESS; - if ((fp = HDfopen(filename, "r")) == (FILE *) NULL) { + if (NULL == (fp = HDfopen(filename, "r"))) { error_msg("cannot open options file %s\n", filename); h5tools_setstatus(EXIT_FAILURE); ret_value = EXIT_FAILURE; @@ -273,90 +292,46 @@ int read_info(const char *filename, pack_opt_t *options) /* cycle until end of file reached */ while (1) { - rc = fscanf(fp, "%s", stype); - if (rc == -1) - break; - - /*------------------------------------------------------------------------- - * filter - *------------------------------------------------------------------------- - */ - if (HDstrcmp(stype,"-f") == 0) { - /* find begining of info */ - i = 0; - c = '0'; - while (c != ' ') { - if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { - error_msg("fscanf error\n"); - h5tools_setstatus(EXIT_FAILURE); - ret_value = EXIT_FAILURE; - goto done; - } /* end if */ - if (HDfeof(fp)) - break; - } - c = '0'; - /* go until end */ - while (c != ' ') { - if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { - error_msg("fscanf error\n"); - h5tools_setstatus(EXIT_FAILURE); - ret_value = EXIT_FAILURE; - goto done; - } /* end if */ - comp_info[i] = c; - i++; - if (HDfeof(fp)) - break; - if (c == 10 /*eol*/) - break; - } - comp_info[i - 1] = '\0'; /*cut the last " */ - if (h5repack_addfilter(comp_info, options) == -1) { - error_msg("could not add compression option\n"); + /* Info indicator must be for layout or filter */ + if (HDstrcmp(stype,"-l") && HDstrcmp(stype, "-f")) { + error_msg("bad file format for %s", filename); + h5tools_setstatus(EXIT_FAILURE); + ret_value = EXIT_FAILURE; + goto done; + } + + /* find begining of info */ + i = 0; + c = '0'; + while (c != ' ') { + if (fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { + error_msg("fscanf error\n"); h5tools_setstatus(EXIT_FAILURE); ret_value = EXIT_FAILURE; goto done; } + if (HDfeof(fp)) + break; } - /*------------------------------------------------------------------------- - * layout - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(stype,"-l") == 0) { - - /* find begining of info */ - i = 0; - c = '0'; - while (c != ' ') { - if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { - error_msg("fscanf error\n"); - h5tools_setstatus(EXIT_FAILURE); - ret_value = EXIT_FAILURE; - goto done; - } /* end if */ - if (HDfeof(fp)) - break; - } - c = '0'; - /* go until end */ - while (c != ' ') { - if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { - error_msg("fscanf error\n"); - h5tools_setstatus(EXIT_FAILURE); - ret_value = EXIT_FAILURE; - goto done; - } /* end if */ - comp_info[i] = c; - i++; - if (HDfeof(fp)) - break; - if (c == 10 /*eol*/) - break; + c = '0'; + /* go until end */ + while (c != ' ') { + if (fscanf(fp, "%c", &c) < 0 && HDferror(fp)) { + error_msg("fscanf error\n"); + h5tools_setstatus(EXIT_FAILURE); + ret_value = EXIT_FAILURE; + goto done; } - comp_info[i - 1] = '\0'; /*cut the last " */ + comp_info[i++] = c; + if (HDfeof(fp)) + break; + if (c == 10 /*eol*/) + break; + } + comp_info[i - 1] = '\0'; /*cut the last " */ + if (!HDstrcmp(stype, "-l")) { if (h5repack_addlayout(comp_info, options) == -1) { error_msg("could not add chunck option\n"); h5tools_setstatus(EXIT_FAILURE); @@ -364,17 +339,15 @@ int read_info(const char *filename, pack_opt_t *options) goto done; } } - /*------------------------------------------------------------------------- - * not valid - *------------------------------------------------------------------------- - */ else { - error_msg("bad file format for %s", filename); - h5tools_setstatus(EXIT_FAILURE); - ret_value = EXIT_FAILURE; - goto done; + if (h5repack_addfilter(comp_info, options) == -1) { + error_msg("could not add compression option\n"); + h5tools_setstatus(EXIT_FAILURE); + ret_value = EXIT_FAILURE; + goto done; + } } - } + } /* end while info-read cycling */ done: if (fp) @@ -398,9 +371,9 @@ set_sort_by(const char *form) { H5_index_t idx_type = H5_INDEX_UNKNOWN; - if (HDstrcmp(form,"name")==0) /* H5_INDEX_NAME */ + if (!HDstrcmp(form, "name")) idx_type = H5_INDEX_NAME; - else if (HDstrcmp(form,"creation_order")==0) /* H5_INDEX_CRT_ORDER */ + else if (!HDstrcmp(form, "creation_order")) idx_type = H5_INDEX_CRT_ORDER; return idx_type; @@ -421,9 +394,9 @@ set_sort_order(const char *form) { H5_iter_order_t iter_order = H5_ITER_UNKNOWN; - if (HDstrcmp(form,"ascending")==0) /* H5_ITER_INC */ + if (!HDstrcmp(form, "ascending")) iter_order = H5_ITER_INC; - else if (HDstrcmp(form,"descending")==0) /* H5_ITER_DEC */ + else if (!HDstrcmp(form, "descending")) iter_order = H5_ITER_DEC; return iter_order; @@ -442,19 +415,19 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) int ret_value = 0; /* parse command line options */ - while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { + while (EOF != (opt = get_option(argc, argv, s_opts, l_opts))) { switch ((char) opt) { /* -i for backward compatibility */ case 'i': infile = opt_arg; - has_i_o = 1; + has_i++; break; /* -o for backward compatibility */ case 'o': outfile = opt_arg; - has_i_o = 1; + has_o++; break; case 'h': @@ -519,7 +492,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) case 'j': options->low_bound = (H5F_libver_t)HDatoi(opt_arg); - if(options->low_bound < H5F_LIBVER_EARLIEST || options->low_bound > H5F_LIBVER_LATEST) { + if (options->low_bound < H5F_LIBVER_EARLIEST || options->low_bound > H5F_LIBVER_LATEST) { error_msg("in parsing low bound\n"); goto done; } @@ -527,7 +500,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) case 'k': options->high_bound = (H5F_libver_t)HDatoi(opt_arg); - if(options->high_bound < H5F_LIBVER_EARLIEST || options->high_bound > H5F_LIBVER_LATEST) { + if (options->high_bound < H5F_LIBVER_EARLIEST || options->high_bound > H5F_LIBVER_LATEST) { error_msg("in parsing high bound\n"); goto done; } @@ -549,10 +522,10 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) { int idx = 0; int ssize = 0; - char *msgPtr = HDstrchr( opt_arg, ':'); + char *msgPtr = HDstrchr(opt_arg, ':'); options->latest = TRUE; /* must use latest format */ if (msgPtr == NULL) { - ssize = HDatoi( opt_arg ); + ssize = HDatoi(opt_arg); for (idx = 0; idx < 5; idx++) options->msg_size[idx] = ssize; } @@ -562,15 +535,15 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) HDstrcpy(msgType, msgPtr + 1); msgPtr[0] = '\0'; ssize = HDatoi( opt_arg ); - if (HDstrncmp(msgType, "dspace",6) == 0) + if (!HDstrncmp(msgType, "dspace", 6)) options->msg_size[0] = ssize; - else if (HDstrncmp(msgType, "dtype", 5) == 0) + else if (!HDstrncmp(msgType, "dtype", 5)) options->msg_size[1] = ssize; - else if (HDstrncmp(msgType, "fill", 4) == 0) + else if (!HDstrncmp(msgType, "fill", 4)) options->msg_size[2] = ssize; - else if (HDstrncmp(msgType, "pline", 5) == 0) + else if (!HDstrncmp(msgType, "pline", 5)) options->msg_size[3] = ssize; - else if (HDstrncmp(msgType, "attr", 4) == 0) + else if (!HDstrncmp(msgType, "attr", 4)) options->msg_size[4] = ssize; } } @@ -607,13 +580,13 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) char strategy[MAX_NC_NAME]; HDstrcpy(strategy, opt_arg); - if(!HDstrcmp(strategy, "FSM_AGGR")) + if (!HDstrcmp(strategy, "FSM_AGGR")) options->fs_strategy = H5F_FSPACE_STRATEGY_FSM_AGGR; - else if(!HDstrcmp(strategy, "PAGE")) + else if (!HDstrcmp(strategy, "PAGE")) options->fs_strategy = H5F_FSPACE_STRATEGY_PAGE; - else if(!HDstrcmp(strategy, "AGGR")) + else if (!HDstrcmp(strategy, "AGGR")) options->fs_strategy = H5F_FSPACE_STRATEGY_AGGR; - else if(!HDstrcmp(strategy, "NONE")) + else if (!HDstrcmp(strategy, "NONE")) options->fs_strategy = H5F_FSPACE_STRATEGY_NONE; else { error_msg("invalid file space management strategy\n", opt_arg); @@ -621,7 +594,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) ret_value = -1; goto done; } - if(options->fs_strategy == (H5F_fspace_strategy_t)0) + if (options->fs_strategy == (H5F_fspace_strategy_t)0) /* To distinguish the "specified" zero value */ options->fs_strategy = (H5F_fspace_strategy_t)-1; } @@ -629,27 +602,27 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) case 'P': options->fs_persist = HDatoi(opt_arg); - if(options->fs_persist == 0) + if (options->fs_persist == 0) /* To distinguish the "specified" zero value */ options->fs_persist = -1; break; case 'T': options->fs_threshold = HDatol(opt_arg); - if(options->fs_threshold == 0) + if (options->fs_threshold == 0) /* To distinguish the "specified" zero value */ options->fs_threshold = -1; break; case 'G': options->fs_pagesize = HDstrtoll(opt_arg, NULL, 0); - if(options->fs_pagesize == 0) + if (options->fs_pagesize == 0) /* To distinguish the "specified" zero value */ options->fs_pagesize = -1; break; case 'q': - if((sort_by = set_sort_by(opt_arg)) < 0) { + if (H5_INDEX_UNKNOWN == set_sort_by(opt_arg)) { error_msg(" failed to set sort by form <%s>\n", opt_arg); h5tools_setstatus(EXIT_FAILURE); ret_value = -1; @@ -658,7 +631,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) break; case 'z': - if((sort_order = set_sort_order(opt_arg)) < 0) { + if (set_sort_order(opt_arg) == H5_ITER_UNKNOWN) { error_msg(" failed to set sort order form <%s>\n", opt_arg); h5tools_setstatus(EXIT_FAILURE); ret_value = -1; @@ -672,18 +645,35 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) default: break; - } /* switch */ - } /* while */ - - if (has_i_o == 0) { - /* check for file names to be processed */ - if (argc <= opt_ind || argv[opt_ind + 1] == NULL) { - error_msg("missing file names\n"); - usage(h5tools_getprogname()); - h5tools_setstatus(EXIT_FAILURE); - ret_value = -1; - } - } + } /* end switch */ + } /* end while there are more options to parse */ + + /* If neither -i nor -o given, get in and out files positionally */ + if (0 == (has_i + has_o)) { + if (argv[opt_ind] != NULL && argv[opt_ind + 1] != NULL) { + infile = argv[opt_ind]; + outfile = argv[opt_ind + 1]; + + if (!HDstrcmp(infile, outfile)) { + error_msg("file names cannot be the same\n"); + usage(h5tools_getprogname()); + h5tools_setstatus(EXIT_FAILURE); + ret_value = -1; + } + } + else { + error_msg("file names missing\n"); + usage(h5tools_getprogname()); + h5tools_setstatus(EXIT_FAILURE); + ret_value = -1; + } + } + else if (has_i != 1 || has_o != 1) { + error_msg("filenames must be either both -i -o or both positional\n"); + usage(h5tools_getprogname()); + h5tools_setstatus(EXIT_FAILURE); + ret_value = -1; + } done: return ret_value; @@ -740,28 +730,6 @@ int main(int argc, const char **argv) if (parse_command_line(argc, argv, &options) < 0) goto done; - /* get file names if they were not yet got */ - if (has_i_o == 0) { - - if (argv[opt_ind] != NULL && argv[opt_ind + 1] != NULL) { - infile = argv[opt_ind]; - outfile = argv[opt_ind + 1]; - - if ( HDstrcmp( infile, outfile ) == 0) { - error_msg("file names cannot be the same\n"); - usage(h5tools_getprogname()); - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - } - else { - error_msg("file names missing\n"); - usage(h5tools_getprogname()); - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - } - if (enable_error_stack > 0) { H5Eset_auto2(H5E_DEFAULT, func, edata); H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index 92b61fc..f81ce4f 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -2,7 +2,7 @@ cmake_minimum_required (VERSION 3.10) project (HDF5_TOOLS_TEST_H5REPACK C) # -------------------------------------------------------------------- -# Add h5Repack test executables +# Add h5repack test executables # -------------------------------------------------------------------- add_executable (testh5repack_detect_szip ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) target_include_directories (testh5repack_detect_szip @@ -85,4 +85,17 @@ if (BUILD_SHARED_LIBS) ) endif () +# -------------------------------------------------------------------- +# Add the h5repack test executable +# -------------------------------------------------------------------- +if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) + add_executable (h5repackgentest ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repackgentest.c) + target_include_directories (h5repackgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + TARGET_C_PROPERTIES (h5repackgentest STATIC) + target_link_libraries (h5repackgentest PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + set_target_properties (h5repackgentest PROPERTIES FOLDER generator/tools) + + #add_test (NAME h5repackgentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repackgentest>) +endif () + include (CMakeTests.cmake) diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake index a28a282..c8db1c3 100644 --- a/tools/test/h5repack/CMakeTests.cmake +++ b/tools/test/h5repack/CMakeTests.cmake @@ -26,10 +26,23 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_deflate.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_early.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le_ex.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fill.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fletcher.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_hlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex-1.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d_ex.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d_ex.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layouto.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout2.h5 @@ -44,6 +57,12 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_shuffle.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_soffset.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_szip.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-1.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-2.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-3.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex.h5 # fsm ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_aggr.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fsm_aggr_nopersist.h5 @@ -699,6 +718,104 @@ endif () endmacro () + macro (ADD_H5_EXTERNAL_TEST testname testtype testfile) + # canonical file = h5repack_${testfile}.h5 - preexist + # external file = h5repack_${testfile}_ex.h5 - preexist + # repacked file = h5repack_${testfile}_rp.h5 - created + # external data file = h5repack_${testfile}_ex-0.dat + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_EXTERNAL-${testname} + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" + ) + set_property(TEST H5REPACK_EXTERNAL-${testname} PROPERTY DISABLED) + endif () + else () + add_test ( + NAME H5REPACK_EXTERNAL-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove h5repack_${testfile}_rp.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}-clear-objects PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + FIXTURES_REQUIRED clear_h5repack + ) + # make sure external data file 0 is available + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_CPY + COMMAND ${CMAKE_COMMAND} -E copy_if_different + "${PROJECT_SOURCE_DIR}/testfiles/h5repack_${testfile}_ex-0.dat" "${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex-0.dat" + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_CPY PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}-clear-objects + ) + # comparison of known files + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF1 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF1 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_CPY + ) + # repack the external file to the repacked file + add_test ( + NAME H5REPACK_EXTERNAL-${testname} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname} PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF1 + ) + # comparison of repacked file to known files + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF2 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF2 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname} + ) + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF3 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF3 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF2 + ) + # invalidate external file by removing its first data file + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DATA_RMV + COMMAND ${CMAKE_COMMAND} -E remove h5repack_${testfile}_ex-0.dat + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DATA_RMV PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF3 + ) + # verify comparison of repacked file to known file + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF4 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF4 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DATA_RMV + ) + # verify comparison of repacked file to known external file fails + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF_FAIL + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF_FAIL PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF4 + WILL_FAIL "true" + ) + endif () + endmacro () + ############################################################################## ############################################################################## ### T H E T E S T S ### @@ -1364,6 +1481,15 @@ ADD_H5_VERIFY_SUPERBLOCK (SB_IS_3 h5repack_layout.h5 2 2 3) ADD_H5_VERIFY_INVALIDBOUNDS (latest_latest_invalid bounds_latest_latest.h5 0 1) ############################################################################## +### E X T E R N A L S T O R A G E T E S T S +############################################################################## +ADD_H5_EXTERNAL_TEST (ext_f32le "TEST" f32le -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_1d "TEST" int32le_1d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_2d "TEST" int32le_2d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_3d "TEST" int32le_3d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_uint8be "TEST" uint8be -l CONTI) + +############################################################################## ### P L U G I N T E S T S ############################################################################## if (BUILD_SHARED_LIBS) diff --git a/tools/test/h5repack/Makefile.am b/tools/test/h5repack/Makefile.am index 59d7a6a..38f7b2f 100644 --- a/tools/test/h5repack/Makefile.am +++ b/tools/test/h5repack/Makefile.am @@ -22,10 +22,12 @@ include $(top_srcdir)/config/commence.am AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib -I$(top_srcdir)/tools/src/h5repack # Test programs and scripts +TEST_PROG=h5repackgentest TEST_SCRIPT=h5repack.sh noinst_PROGRAMS=h5repacktst testh5repack_detect_szip +check_PROGRAMS=$(TEST_PROG) SCRIPT_DEPEND=../../src/h5repack/h5repack$(EXEEXT) h5repacktst$(EXEEXT) if HAVE_SHARED_CONDITIONAL if USE_PLUGINS_CONDITIONAL @@ -57,7 +59,8 @@ endif # Temporary files. *.h5 are generated by h5repack. They should # copied to the testfiles/ directory if update is required. -CHECK_CLEANFILES+=*.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 +# *.dat files may be created by h5repackgentest. +CHECK_CLEANFILES+=*.h5 *.dat *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 DISTCLEANFILES=h5repack.sh h5repack_plugin.sh include $(top_srcdir)/config/conclude.am diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in index 1586485..67056fb 100644 --- a/tools/test/h5repack/h5repack.sh.in +++ b/tools/test/h5repack/h5repack.sh.in @@ -111,6 +111,16 @@ $SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_persist.h5 $SRC_H5REPACK_TESTFILES/h5repack_none.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_nopersist.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_persist.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5 +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5 $SRC_H5DIFF_TESTFILES/h5diff_attr1.h5 $SRC_TOOLS_TESTFILES/tfamily00000.h5 $SRC_TOOLS_TESTFILES/tfamily00001.h5 @@ -156,10 +166,19 @@ $SRC_H5REPACK_TESTFILES/ublock.bin $SRC_H5REPACK_TESTFILES/h5repack.info $SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl $SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-1.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex-0.dat $SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl $SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst $SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst $SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-1.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-2.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-3.dat $SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst $SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl $SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl @@ -595,8 +614,94 @@ VERIFY_INVALIDBOUNDS() } # end of VERIFY_INVALIDBOUNDS +# ----------------------------------------------------------------------------- +# Expect h5diff to fail +# ----------------------------------------------------------------------------- +DIFFFAIL() +{ + VERIFY h5diff unequal $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DIFF_BIN -q "$@" + ) + RET=$? + if [ $RET == 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi +} + +# ----------------------------------------------------------------------------- +# Catchall test for repacking with external files +# Loops over all (internally-listed) cases and applies the given arguments +# to h5repack. +# Each test file family must be listed in the for loop at the start of the +# 'function'. +# Expects case files to be of format: +# + h5repack_<NAME>.h5 +# + h5repack_<NAME>_ex.h5 +# + h5repack_<NAME>_ex-<N>.dat +# ...where NAME is part of the internal list, and N is a positive decimal +# number; multiple external files (*.dat) are allowed per file, but they must +# follow the pattern and be in contiguous numerical sequence starting at 0. +# ----------------------------------------------------------------------------- +VERIFY_EXTERNAL_CONSOLIDATION() +{ + for name in f32le int32le_1d int32le_2d int32le_3d uint8be + do + basename="h5repack_${name}" + base_ext="${basename}_ex" + base_rpkg="${basename}_rp" + canonical="${basename}.h5" + external="${base_ext}.h5" + ex_dat="${base_ext}-0.dat" + ex_dat_mv="__${ext_dat}" + repacked="${base_rpkg}.h5" + prev_nerrors=$nerrors + + TESTING external consolidation on $name with h5repack $@ + echo " . . ." + + # baseline comparison of known files + DIFFTEST $canonical $external + + # repack the external file, verify integrity + ( cd $TESTDIR + $H5REPACK_BIN $@ $external $repacked + ) + DIFFTEST $repacked $canonical + DIFFTEST $repacked $external + + # invalidate external file by moving its first data file; verify + ( cd $TESTDIR + mv $ex_dat $ex_dat_mv + ) + DIFFFAIL $canonical $external + DIFFFAIL $repacked $external + DIFFTEST $canonical $repacked + + # reset test state for re-runs with different h5repack arguments + ( cd $TESTDIR + mv $ex_dat_mv $ex_dat + rm $repacked + ) + + # flag if any of the above checks failed + if [ $prev_nerrors != $nerrors ] + then + echo ". . . *FAILED*" + nerrors="`expr $prev_nerrors + 1`" + else + echo ". . . PASSED" + fi + done +} # end VERIFY_EXTERNAL_CONSOLIDATION + +# ----------------------------------------------------------------------------- # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file -# +# ----------------------------------------------------------------------------- TOOLTEST0() { infile=$2 @@ -1465,6 +1570,11 @@ VERIFY_SUPERBLOCK 2 2 3 h5repack_layout.h5 -j 2 -k 2 h5repack_layout.h5 # -j 0 -k 1, file cannot be opened VERIFY_INVALIDBOUNDS 0 1 bounds_latest_latest.h5 +######################################## +# Testing external storage +######################################## +VERIFY_EXTERNAL_CONSOLIDATION -l CONTI + # Clean up temporary files/directories CLEAN_TESTFILES_AND_TESTDIR diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c new file mode 100644 index 0000000..12883b7 --- /dev/null +++ b/tools/test/h5repack/h5repackgentest.c @@ -0,0 +1,413 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* For generating files for verifying h5repack with external storage. . . + * + * Each case file should follow the format of: + * + h5repack_<NAME>.h5 + * + h5repack_<NAME>_ex.h5 + * + h5repack_<NAME>_ex-<N>.dat + * ...where NAME idenfities the type, and N is a positive decimal number; + * multiple external files (*.dat) are allowed per file, but they must + * follow the pattern and be in contiguous numerical sequence starting at 0. + * + * Each file typename must be added to the listing for + * `VERIFY_EXTERNAL_CONSOLIDATION` in h5repack.sh + * + * There is no restriction on the name, number, or structure of datasets and + * groups in HDF5 file. + * + * The inluded datatypes should be more than adequate to verify the correctness + * of the behavior -- if one type can be consolidated from external storage, + * then thay all can. + */ + +#include "hdf5.h" +#include "H5private.h" + +#define MAX_NAME_SIZE 256 +#define FILE_INT32LE_1 "h5repack_int32le_1d" +#define FILE_INT32LE_2 "h5repack_int32le_2d" +#define FILE_INT32LE_3 "h5repack_int32le_3d" +#define FILE_UINT8BE "h5repack_uint8be" +#define FILE_F32LE "h5repack_f32le" + +#define H5REPACKGENTEST_OOPS ret_value = -1; goto done; + +#define H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space) { \ + if ((dcpl) != H5P_DEFAULT && (dcpl) != H5I_INVALID_HID) { \ + (void)H5Pclose((dcpl)); \ + } \ + if ((file) != H5I_INVALID_HID) { (void)H5Fclose((file)); } \ + if ((space) != H5I_INVALID_HID) { (void)H5Sclose((space)); } \ +} + +struct external_def { + hsize_t type_size; + unsigned n_elts_per_file; + unsigned n_elts_total; +}; + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Helper function to create and write a dataset to file. + * Returns 0 on success, -1 on failure. + */ +static int +__make_dataset( + hid_t file_id, + const char *dset_name, + hid_t mem_type_id, + hid_t space_id, + hid_t dcpl_id, + void *wdata) +{ + hid_t dset_id = H5I_INVALID_HID; + int ret_value = 0; + + dset_id = H5Dcreate2( + file_id, + dset_name, + mem_type_id, + space_id, + H5P_DEFAULT, + dcpl_id, + H5P_DEFAULT); + if (dset_id == H5I_INVALID_HID) { + H5REPACKGENTEST_OOPS; + } + + if (H5Dwrite( + dset_id, + mem_type_id, + H5S_ALL, + H5S_ALL, + H5P_DEFAULT, + wdata) + < 0) + { + H5REPACKGENTEST_OOPS; + } + +done: + if (dset_id != H5I_INVALID_HID) { (void)H5Dclose(dset_id); } + return ret_value; +} /* end __make_dataset() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Helper function to populate the DCPL external storage list. + * Creates external files for the DCPL, with each file name following the + * convention "<filename>_ex-<num>.dat". Will append `n_external_files` to + * the filename list, with each file having space for `n_elts` items of the + * type (of size `elt_size`). The numeric inputs are not sanity-checked. + * Returns 0 on success, -1 on failure. + */ +static int +__set_dcpl_external_list( + hid_t dcpl, + const char *filename, + unsigned n_elts_per_file, + unsigned n_elts_total, + hsize_t elt_size) +{ + char name[MAX_NAME_SIZE]; + unsigned n_external_files = 0; + unsigned i = 0; + + if (NULL == filename || '\0' == *filename) { + return -1; + } + + n_external_files = n_elts_total / n_elts_per_file; + if (n_elts_total != (n_external_files * n_elts_per_file)) { + return -1; + } + + for (i = 0; i < n_external_files; i++) { + if (snprintf(name, MAX_NAME_SIZE, "%s_ex-%u.dat", filename, i) >= MAX_NAME_SIZE) { + return -1; + } + if (H5Pset_external(dcpl, name, 0, n_elts_per_file * elt_size) < 0) { + return -1; + } + } + return 0; +} /* end __set_dcpl_external_list() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Generalized utility function to write a file with the specified data and + * dataset configuration. If `ext` is provided, will attempt to use external + * storage. + * Returns 0 on success, -1 on failure. + */ +static int +__make_file( + const char *basename, + struct external_def *ext, + hid_t type_id, + hsize_t rank, + hsize_t *dims, + void *wdata) +{ + char filename[MAX_NAME_SIZE]; + hid_t file_id = H5I_INVALID_HID; + hid_t dcpl_id = H5P_DEFAULT; + hid_t space_id = H5I_INVALID_HID; + int ret_value = 0; + + if (snprintf(filename, + MAX_NAME_SIZE, + "%s%s.h5", + basename, + (NULL != ext) ? "_ex" : "") + >= MAX_NAME_SIZE) + { + H5REPACKGENTEST_OOPS; + } + + if (NULL != ext) { + dcpl_id = H5Pcreate(H5P_DATASET_CREATE); + if (dcpl_id == H5I_INVALID_HID) { + H5REPACKGENTEST_OOPS; + } + if (__set_dcpl_external_list( + dcpl_id, + basename, + ext->n_elts_per_file, + ext->n_elts_total, + ext->type_size) + < 0) + { + H5REPACKGENTEST_OOPS; + } + } + + space_id = H5Screate_simple(rank, dims, NULL); + if (space_id == H5I_INVALID_HID) { + H5REPACKGENTEST_OOPS; + } + + file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (file_id == H5I_INVALID_HID) { + H5REPACKGENTEST_OOPS; + } + + if (__make_dataset( + file_id, + "dset", + type_id, + space_id, + dcpl_id, + wdata) + < 0) + { + H5REPACKGENTEST_OOPS; + } + +done: + H5REPACKGENTEST_COMMON_CLEANUP(dcpl_id, file_id, space_id); + return ret_value; +} /* end __make_file() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_1d(hbool_t external) +{ + int32_t wdata[12]; + hsize_t dims[] = {12}; + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 6, 12 }; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 12; n++) { + wdata[n] = n-6; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_1, def_ptr, H5T_STD_I32LE, 1, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_int32le_1d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_2d(hbool_t external) +{ + int32_t wdata[64]; + hsize_t dims[] = {8, 8}; + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 64, 64 }; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 64; n++) { + wdata[n] = n-32; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_2, def_ptr, H5T_STD_I32LE, 2, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_int32le_2d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_3d(hbool_t external) +{ + hsize_t dims[] = {8, 8, 8}; + int32_t wdata[512]; /* 8^3, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(int32_t), 512, 512 }; + int32_t n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* generate values, alternating positive and negative + */ + for (i=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++) { + for (k=0; k < dims[2]; k++, n++) { + wdata[n] = (k + j*512 + i*4096) * ((n&1) ? (-1) : (1)); + } + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_INT32LE_3, def_ptr, H5T_STD_I32LE, 3, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_int32le_3d() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_uint8be(hbool_t external) +{ + hsize_t dims[] = {4, 8, 8}; + uint8_t wdata[256]; /* 4*8*8, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { (hsize_t)sizeof(uint8_t), 64, 256 }; + uint8_t n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values, ping-pong from ends of range + */ + for (i=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++) { + for (k=0; k < dims[2]; k++, n++) { + wdata[n] = n * ((n&1) ? (-1) : (1)); + } + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_UINT8BE, def_ptr, H5T_STD_U8BE, 3, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_uint8be() */ + + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_f32le(hbool_t external) +{ + hsize_t dims[] = {12, 6}; + float wdata[72]; /* 12*6, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = { + (hsize_t)sizeof(float), + 72, + 72 + }; + float n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values */ + for (i=0, k=0, n=0; i < dims[0]; i++) { + for (j=0; j < dims[1]; j++, k++, n++) { + wdata[k] = n * 801.1 * ((k % 5 == 1) ? (-1) : (1)); + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (__make_file(FILE_F32LE, def_ptr, H5T_IEEE_F32LE, 2, dims, wdata) < 0) { + ret_value = -1; + } + + return ret_value; +} /* end generate_f32le() */ + + +/* ---------------------------------------------------------------------------- + * Create files. + * Return 0 on success, nonzero on failure. + */ +int +main(void) +{ + int i = 0; + int ret_value = 0; + + for (i=0; i < 2; i++) { + hbool_t external = (i&1) ? TRUE : FALSE; + if (ret_value == 0) { ret_value -= generate_int32le_1d(external); } + if (ret_value == 0) { ret_value -= generate_int32le_2d(external); } + if (ret_value == 0) { ret_value -= generate_int32le_3d(external); } + if (ret_value == 0) { ret_value -= generate_uint8be(external); } + if (ret_value == 0) { ret_value -= generate_f32le(external); } + } /* end for external data storage or not */ + + if (ret_value != 0) { + HDprintf("A problem occurred!\n"); + } + + return ret_value; +} /* end main() */ + + diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt index 0eef0f5..03553dd 100644 --- a/tools/test/h5repack/testfiles/h5repack-help.txt +++ b/tools/test/h5repack/testfiles/h5repack-help.txt @@ -6,13 +6,17 @@ usage: h5repack [OPTIONS] file1 file2 -v, --verbose Verbose mode, print object information -V, --version Print version number and exit -n, --native Use a native HDF5 type when repacking - --enable-error-stack Prints messages from the HDF5 error stack as they occur + --enable-error-stack Prints messages from the HDF5 error stack as they + occur -L, --latest Use latest version of file format - This option will take precedence over the -j and -k options - --low=BOUND The low bound for library release versions to use when creating - objects in the file (default is H5F_LIBVER_EARLIEST) - --high=BOUND The high bound for library release versions to use when creating - objects in the file (default is H5F_LIBVER_LATEST) + This option will take precedence over the options + --low and --high + --low=BOUND The low bound for library release versions to use + when creating objects in the file + (default is H5F_LIBVER_EARLIEST) + --high=BOUND The high bound for library release versions to use + when creating objects in the file + (default is H5F_LIBVER_LATEST) -c L1, --compact=L1 Maximum number of links in header messages -d L2, --indexed=L2 Minimum number of links in the indexed format -s S[:F], --ssize=S[:F] Shared object header message minimum size @@ -27,10 +31,14 @@ usage: h5repack [OPTIONS] file1 file2 -z Z, --sort_order=Z Sort groups and attributes by order Z -f FILT, --filter=FILT Filter type -l LAYT, --layout=LAYT Layout type - -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for H5Pset_file_space_strategy - -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free-space for H5Pset_file_space_strategy - -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold for H5Pset_file_space_strategy - -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for H5Pset_file_space_page_size + -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for + H5Pset_file_space_strategy + -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free- + space for H5Pset_file_space_strategy + -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold + for H5Pset_file_space_strategy + -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for + H5Pset_file_space_page_size M - is an integer greater than 1, size of dataset in bytes (default is 0) E - is a filename. @@ -38,15 +46,17 @@ usage: h5repack [OPTIONS] file1 file2 U - is a filename. T - is an integer A - is an integer greater than zero - Q - is the sort index type for the input file. It can be "name" or "creation_order" (default) - Z - is the sort order type for the input file. It can be "descending" or "ascending" (default) + Q - is the sort index type for the input file. It can be "name" or + "creation_order" (default) + Z - is the sort order type for the input file. It can be "descending" or + "ascending" (default) B - is the user block size, any value that is 512 or greater and is a power of 2 (1024 default) F - is the shared object header message type, any of <dspace|dtype|fill| pline|attr>. If F is not specified, S applies to all messages - BOUND is an integer indicating the library release versions to use when creating - objects in the file (see H5Pset_libver_bounds()): + BOUND is an integer indicating the library release versions to use when + creating objects in the file (see H5Pset_libver_bounds()): 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct 1: This is H5F_LIBVER_V18 in H5F_libver_t struct 2: This is H5F_LIBVER_V110 in H5F_libver_t struct @@ -54,24 +64,31 @@ usage: h5repack [OPTIONS] file1 file2 FS_STRATEGY is a string indicating the file space strategy used: FSM_AGGR: - The mechanisms used in managing file space are free-space managers, aggregators and virtual file driver. + The mechanisms used in managing file space are free-space + managers, aggregators and virtual file driver. PAGE: - The mechanisms used in managing file space are free-space managers with embedded paged aggregation and virtual file driver. + The mechanisms used in managing file space are free-space + managers with embedded paged aggregation and virtual file driver. AGGR: - The mechanisms used in managing file space are aggregators and virtual file driver. + The mechanisms used in managing file space are aggregators and + virtual file driver. NONE: - The mechanisms used in managing file space are virtual file driver. - The default strategy when not set is FSM_AGGR without persisting free-space. + The mechanisms used in managing file space are virtual file + driver. + The default strategy when not set is FSM_AGGR without persisting free- + space. FS_PERSIST is 1 to persisting free-space or 0 to not persisting free-space. The default when not set is not persisting free-space. The value is ignored for AGGR and NONE strategies. - FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be tracked by the library. + FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be + tracked by the library. The default when not set is 1. The value is ignored for AGGR and NONE strategies. - FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when the file space strategy PAGE is used. + FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when + the file space strategy PAGE is used. The default when not set is 4096. FILT - is a string with the format: @@ -99,9 +116,9 @@ usage: h5repack [OPTIONS] file1 file2 NBIT (no parameter) SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type is either IN or DS - UD=<filter_number,filter_flag,cd_value_count,value_1[,value_2,...,value_N]> - required values for filter_number,filter_flag,cd_value_count,value_1 - optional values for value_2 to value_N + UD=<filter_number,filter_flag,cd_value_count,value1[,value2,...,valueN]> + Required values: filter_number, filter_flag, cd_value_count, value1 + Optional values: value2 to valueN NONE (no parameter) LAYT - is a string with the format: @@ -138,12 +155,12 @@ Examples of use: 4) h5repack -L -c 10 -s 20:dtype file1 file2 Using latest file format with maximum compact group size of 10 and - and minimum shared datatype size of 20 + minimum shared datatype size of 20 5) h5repack --low=0 --high=1 file1 file2 - Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via H5Pset_libver_bounds() when - creating the repacked file: file2 + Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via + H5Pset_libver_bounds() when creating the repacked file, file2 5) h5repack -f SHUF -f GZIP=1 file1 file2 diff --git a/tools/test/h5repack/testfiles/h5repack_f32le.h5 b/tools/test/h5repack/testfiles/h5repack_f32le.h5 Binary files differnew file mode 100644 index 0000000..03a9b57 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat Binary files differnew file mode 100644 index 0000000..8378fc2 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 Binary files differnew file mode 100644 index 0000000..ca6c49d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 Binary files differnew file mode 100644 index 0000000..7d60566 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat new file mode 100644 index 0000000..f75ada5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat @@ -0,0 +1 @@ +
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat Binary files differnew file mode 100644 index 0000000..1f8f3b6 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 Binary files differnew file mode 100644 index 0000000..ba4b534 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 Binary files differnew file mode 100644 index 0000000..2f32bd1 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat Binary files differnew file mode 100644 index 0000000..c6bfc64 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 Binary files differnew file mode 100644 index 0000000..f6cce59 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 Binary files differnew file mode 100644 index 0000000..7a61ef5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat Binary files differnew file mode 100644 index 0000000..b505eb4 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 Binary files differnew file mode 100644 index 0000000..7c4b750 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be.h5 b/tools/test/h5repack/testfiles/h5repack_uint8be.h5 Binary files differnew file mode 100644 index 0000000..0e25211 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat Binary files differnew file mode 100644 index 0000000..f95b90a --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat new file mode 100644 index 0000000..011ab48 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat @@ -0,0 +1 @@ +@BDFHJLNPRTVXZ\^`bdfhjlnprtvxz|~
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat new file mode 100644 index 0000000..069b96d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat @@ -0,0 +1 @@ +}{ywusqomkigeca_][YWUSQOMKIGECA
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat new file mode 100644 index 0000000..240d8ca --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat @@ -0,0 +1 @@ +?=;97531/-+)'%#!
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