Update sonumbers (#665)

* Hdf5 1 12 doxygen version correction (#658)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Attempt format uniformity in RELEASE.txt.

* BUG: DataSet assignment operator is missing (#503)

* BUG: DataSet assignment operator is missing

* Some compilers complain if the copy constructor is given explicitly
  but the assignment operator is implicitly set to default.

* Explicitly defining the assignment operator allows us to properly
  handle reference counters for shared resources.

* BUG: DataSet assignment operator is missing.

* Mimicking code of H5DataType::operator() as suggested by @bmribler.

* Added test

Description:
    Added test for DataSet::operator= that Leengit added
Platform tested:
    Linux/64 (jelly)

* Removed Author field.

* Commit clang format changes.

* Entry for Leengit's github PR #503

* Removed lines left by mistake

Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Add H5Dchunk_iter method for iterating over chunks (#6)

* Add H5Dchunk_iter method for iterating over chunks

This method iterates over all chunks in dataset, calling a user-supplied
callback with the chunk information and optional user supplied data.

The iterator is stopped when ITER_STOP is returned by the user-supplied
callback or the iterator is exhausted.

Existing methods to get chunk_info performs an iteration each time, so
to get many or all chunks causes SUM(i) for i = 0 -> N operations for N
chunks, as opposed to N operations when using this iterator for this use case.

* H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration.

* H5D: move H5Dchunk_iter private methods to specific

* trace: add H5D_chunk_iter_op_t and trace H5D.c

* chunks-iter: document chunk_iter

* chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Set initial doxygen version for H5Dchunk_iter().

* Update so numbers in Makefile.ins.

Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Lee Newberg <35611400+Leengit@users.noreply.github.com>
Co-authored-by: Binh-Minh Ribler <bmribler@hdfgroup.org>
Co-authored-by: Gaute Hope <eg@gaute.vetsj.com>

6 files changed, 54 insertions, 54 deletions

diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in
index f328021..4e42c0f 100644
--- a/c++/src/Makefile.in
+++ b/c++/src/Makefile.in
@@ -811,9 +811,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -823,12 +823,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # This is our main target
 lib_LTLIBRARIES = libhdf5_cpp.la
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index df797d3..ee1d09f 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -801,9 +801,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -813,12 +813,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # This is our main target
 lib_LTLIBRARIES = libhdf5_hl_cpp.la
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index cfaabb4..5504ff8 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -829,9 +829,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -841,12 +841,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # Our main target, the high-level fortran library
 lib_LTLIBRARIES = libhdf5hl_fortran.la
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 9e34722..1cda39e 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -800,9 +800,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -812,12 +812,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # This library is our main target.
 lib_LTLIBRARIES = libhdf5_hl.la
diff --git a/java/src/jni/Makefile.in b/java/src/jni/Makefile.in
index 569fc24..f9a8165 100644
--- a/java/src/jni/Makefile.in
+++ b/java/src/jni/Makefile.in
@@ -804,9 +804,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -816,12 +816,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # Mark this directory as part of the JNI API
 JAVA_API = yes
diff --git a/src/Makefile.in b/src/Makefile.in
index 800e5bb..6980019 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -959,9 +959,9 @@ LT_VERS_REVISION = 0
 LT_CXX_VERS_INTERFACE = 201
 LT_CXX_VERS_REVISION = 0
 LT_CXX_VERS_AGE = 1
-LT_F_VERS_INTERFACE = 200
-LT_F_VERS_REVISION = 1
-LT_F_VERS_AGE = 0
+LT_F_VERS_INTERFACE = 201
+LT_F_VERS_REVISION = 0
+LT_F_VERS_AGE = 1
 LT_HL_VERS_INTERFACE = 200
 LT_HL_VERS_REVISION = 1
 LT_HL_VERS_AGE = 0
@@ -971,12 +971,12 @@ LT_HL_CXX_VERS_AGE = 0
 LT_HL_F_VERS_INTERFACE = 200
 LT_HL_F_VERS_REVISION = 1
 LT_HL_F_VERS_AGE = 0
-LT_JAVA_VERS_INTERFACE = 200
-LT_JAVA_VERS_REVISION = 1
-LT_JAVA_VERS_AGE = 0
-LT_TOOLS_VERS_INTERFACE = 200
-LT_TOOLS_VERS_REVISION = 1
-LT_TOOLS_VERS_AGE = 0
+LT_JAVA_VERS_INTERFACE = 201
+LT_JAVA_VERS_REVISION = 0
+LT_JAVA_VERS_AGE = 1
+LT_TOOLS_VERS_INTERFACE = 201
+LT_TOOLS_VERS_REVISION = 0
+LT_TOOLS_VERS_AGE = 1
 
 # Our main target, the HDF5 library
 lib_LTLIBRARIES = libhdf5.la