Merge pull request #2805 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:tools_normalization_1_12 to hdf5_1_12

* commit '9c255bc995a9cc2b7b328507a759cc059427c839':
  Normalization of tools with develop

31 files changed, 602 insertions, 539 deletions

diff --git a/MANIFEST b/MANIFEST
index b98f24a..d3174b3 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -2491,6 +2491,7 @@
 ./tools/test/h5diff/testfiles/h5diff_80.txt
 ./tools/test/h5diff/testfiles/h5diff_800.txt
 ./tools/test/h5diff/testfiles/h5diff_801.txt
+./tools/test/h5diff/testfiles/h5diff_830.txt
 ./tools/test/h5diff/testfiles/h5diff_90.txt
 ./tools/test/h5diff/testfiles/h5diff_100.txt
 ./tools/test/h5diff/testfiles/h5diff_101.txt
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 152ec1a..7d3f40a 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Robb Matzke <matzke@llnl.gov>
+ * Programmer:  Robb Matzke
  *              Thursday, July 23, 1998
  *
  * Purpose:     Support functions for the various tools.
diff --git a/tools/lib/h5tools_str.h b/tools/lib/h5tools_str.h
index 074e86d..65446ee 100644
--- a/tools/lib/h5tools_str.h
+++ b/tools/lib/h5tools_str.h
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Bill Wendling <wendling@ncsa.uiuc.edu>
+ * Programmer:  Bill Wendling
  *              Monday, 19. February 2001
  */
 #ifndef H5TOOLS_STR_H__
diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h
index 42144cc..07069cc 100644
--- a/tools/lib/h5tools_utils.h
+++ b/tools/lib/h5tools_utils.h
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Bill Wendling <wendling@ncsa.uiuc.edu>
+ * Programmer:  Bill Wendling
  *              Tuesday, 6. March 2001
  *
  * Purpose:     Support functions for the various tools.
diff --git a/tools/src/h5diff/h5diff_main.c b/tools/src/h5diff/h5diff_main.c
index 33d6570..e14447d 100644
--- a/tools/src/h5diff/h5diff_main.c
+++ b/tools/src/h5diff/h5diff_main.c
@@ -26,7 +26,7 @@
  * Return: An  exit status of 0 means no differences were found, 1 means some
  *   differences were found.
  *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 9, 2003
  *
diff --git a/tools/src/h5diff/ph5diff_main.c b/tools/src/h5diff/ph5diff_main.c
index c473c8b..2336378 100644
--- a/tools/src/h5diff/ph5diff_main.c
+++ b/tools/src/h5diff/ph5diff_main.c
@@ -31,7 +31,7 @@ static void ph5diff_worker(int );
  * Return: An exit status of 0 means no differences were found, 1 means some
  *   differences were found.
  *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 9, 2003
  *
diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c
index e239cbc..8cf9b3c 100644
--- a/tools/src/h5ls/h5ls.c
+++ b/tools/src/h5ls/h5ls.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Robb Matzke <matzke@llnl.gov>
+ * Programmer:  Robb Matzke
  *              Monday, March 23, 1998
  */
 
diff --git a/tools/src/h5repack/h5repack_parse.c b/tools/src/h5repack/h5repack_parse.c
index 95cacc1..50ccd7a 100644
--- a/tools/src/h5repack/h5repack_parse.c
+++ b/tools/src/h5repack/h5repack_parse.c
@@ -478,7 +478,7 @@ obj_list_t* parse_filter(const char *str, unsigned *n_objs, filter_info_t *filt,
  * Example:
  * "AA,B,CDE:CHUNK=10X10"
  *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: December 30, 2003
  *
diff --git a/tools/src/h5repack/h5repack_refs.c b/tools/src/h5repack/h5repack_refs.c
index 9544ee3..332ef1f 100644
--- a/tools/src/h5repack/h5repack_refs.c
+++ b/tools/src/h5repack/h5repack_refs.c
@@ -537,7 +537,6 @@ static int copy_refs_attr(hid_t loc_in,
                KY 2020-02-10
             */
             is_ref_comp = (ref_comp_field_n > 0);
-
         }
 
 
diff --git a/tools/src/misc/h5debug.c b/tools/src/misc/h5debug.c
index e9a783b..7242ed3 100644
--- a/tools/src/misc/h5debug.c
+++ b/tools/src/misc/h5debug.c
@@ -15,7 +15,7 @@
  *
  * Created:             debug.c
  *                      Jul 18 1997
- *                      Robb Matzke <matzke@llnl.gov>
+ *                      Robb Matzke
  *
  * Purpose:             Debugs an existing HDF5 file at a low level.
  *
@@ -237,7 +237,6 @@ get_H5FA_class(const uint8_t *sig)
  *              Failure:        exit (non-zero)
  *
  * Programmer:  Robb Matzke
- *              matzke@llnl.gov
  *              Jul 18 1997
  *
  *-------------------------------------------------------------------------
diff --git a/tools/src/misc/h5repart.c b/tools/src/misc/h5repart.c
index d516fa0..371cf2c 100644
--- a/tools/src/misc/h5repart.c
+++ b/tools/src/misc/h5repart.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Robb Matzke <matzke@llnl.gov>
+ * Programmer:  Robb Matzke
  *              Wednesday, May 13, 1998
  *
  * Purpose:    Repartitions a file family.  This program can be used to
diff --git a/tools/test/h5copy/testh5copy.sh.in b/tools/test/h5copy/testh5copy.sh.in
index 2440ca4..ebbcb6c 100644
--- a/tools/test/h5copy/testh5copy.sh.in
+++ b/tools/test/h5copy/testh5copy.sh.in
@@ -13,7 +13,7 @@
 #
 # Tests for the h5copy tool
 #
-# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org)
+# Pedro Vicente Nunes, Albert Cheng
 # Thursday, July 20, 2006
 #
 
@@ -200,6 +200,7 @@ TOOLTEST()
         fi
         runh5diff=no
     fi
+
     if [ "$3" = -o ]; then
         outputfile=$4
     else
@@ -219,6 +220,7 @@ TOOLTEST()
         $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
     RET=$?
+
     if [ $RET != 0 ]; then
         echo "*FAILED*"
         echo "failed result is:"
@@ -268,6 +270,7 @@ TOOLTEST_PREFILL()
         $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2
     ) > $actualout 2> $actualerr
     RET=$?
+
     if [ $RET != 0 ]; then
         echo "*FAILED*"
         echo "failed result is:"
@@ -282,6 +285,7 @@ TOOLTEST_PREFILL()
             $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2
         ) > $actualout 2> $actualerr
         RET=$?
+
         if [ $RET != 0 ]; then
             echo "*FAILED*"
             echo "failed result is:"
@@ -313,6 +317,7 @@ TOOLTEST_SAME()
     else
         runh5diff=no
     fi
+
     if [ "$3" = -o ]; then
         outputfile=$4
     else
@@ -330,6 +335,7 @@ TOOLTEST_SAME()
         $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name
     ) > $actualout 2> $actualerr
     RET=$?
+
     if [ $RET != 0 ]; then
         echo "*FAILED*"
         echo "failed result is:"
@@ -344,6 +350,7 @@ TOOLTEST_SAME()
             $RUNSERIAL $H5COPY_BIN  -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2
         ) > $actualout 2> $actualerr
         RET=$?
+
         if [ $RET != 0 ]; then
             echo "*FAILED*"
             echo "failed result is:"
@@ -406,6 +413,7 @@ TOOLTEST_FAIL()
     if [ "$1" = -i ]; then
         inputfile=$2
     fi
+
     if [ "$3" = -o ]; then
         outputfile=$4
     fi
@@ -417,8 +425,8 @@ TOOLTEST_FAIL()
         #echo "#############################"
         $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
-
     RET=$?
+
     # save actualout and actualerr in case they are needed later.
     cp $actualout $actualout_sav
     STDOUT_FILTER $actualout
diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake
index 5aa1d1a..4e8e8d1 100644
--- a/tools/test/h5diff/CMakeTests.cmake
+++ b/tools/test/h5diff/CMakeTests.cmake
@@ -293,6 +293,7 @@
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_80.txt
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_800.txt
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_801.txt
+      ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_830.txt
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_90.txt
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_8625.txt
       ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_8639.txt
@@ -919,6 +920,8 @@
           h5diff_800.out.err
           h5diff_801.out
           h5diff_801.out.err
+          h5diff_830.out
+          h5diff_830.out.err
           h5diff_8625.out
           h5diff_8625.out.err
           h5diff_8639.out
@@ -1544,6 +1547,11 @@ ADD_H5_TEST (h5diff_800 1 -v ${FILE7} ${FILE8} /g1/array /g1/array)
 ADD_H5_TEST (h5diff_801 1 -v ${FILE7} ${FILE8A} /g1/array /g1/array)
 
 # ##############################################################################
+# # dataset subsets
+# ##############################################################################
+#TRILABS-227 ADD_H5_TEST (h5diff_830 1 --enable-error-stack -v ${FILE7} ${FILE8} /g1/array3D[0,0,0;2,2,1;2,2,2;] /g1/array3D[0,0,0;2,2,1;2,2,2;])
+
+# ##############################################################################
 # # VDS tests
 # ##############################################################################
 ADD_H5_TEST (h5diff_v1 0 -v ${FILEV1} ${FILEV2})
diff --git a/tools/test/h5diff/h5diff_plugin.sh.in b/tools/test/h5diff/h5diff_plugin.sh.in
index 341cba5..ffc43da 100644
--- a/tools/test/h5diff/h5diff_plugin.sh.in
+++ b/tools/test/h5diff/h5diff_plugin.sh.in
@@ -135,24 +135,24 @@ CLEAN_TESTFILES_AND_TESTDIR()
 #   -h   print help page
 while [ $# -gt 0 ]; do
     case "$1" in
-    -p)    # reset the tool name and bin to run ph5diff tests
-    TESTNAME=ph5diff
-    H5DIFF=../../src/h5diff/ph5diff  # The tool name
-    H5DIFF_BIN=`pwd`/$H5DIFF    # The path of the tool binary
-    pmode=yes
-    shift
-    ;;
+    -p) # reset the tool name and bin to run ph5diff tests
+        TESTNAME=ph5diff
+        H5DIFF=../../src/h5diff/ph5diff  # The tool name
+        H5DIFF_BIN=`pwd`/$H5DIFF    # The path of the tool binary
+        pmode=yes
+        shift
+        ;;
     -h) # print help page
-    echo "$0 [-p] [-h]"
-    echo "    -p   run ph5diff tests"
-    echo "    -h   print help page"
-    shift
-    exit 0
-    ;;
+        echo "$0 [-p] [-h]"
+        echo "    -p   run ph5diff tests"
+        echo "    -h   print help page"
+        shift
+        exit 0
+        ;;
     *)  # unknown option
         echo "$0: Unknown option ($1)"
-    exit 1
-    ;;
+        exit 1
+        ;;
     esac
 done
 
@@ -218,19 +218,21 @@ TOOLTEST() {
     # Run test.
     TESTING $H5DIFF $@
     (
-    #echo "#############################"
-    #echo "Expected output for '$H5DIFF $@'"
-    #echo "#############################"
-    cd $TESTDIR
-    eval $ENVCMD $RUNCMD $H5DIFF_BIN "$@"
+        #echo "#############################"
+        #echo "Expected output for '$H5DIFF $@'"
+        #echo "#############################"
+        cd $TESTDIR
+        eval $ENVCMD $RUNCMD $H5DIFF_BIN "$@"
     ) >$actual 2>$actual_err
     EXIT_CODE=$?
+
     # save actual and actual_err in case they are needed later.
     cp $actual $actual_sav
     STDOUT_FILTER $actual
     cp $actual_err $actual_err_sav
     STDERR_FILTER $actual_err
     cat $actual_err >> $actual
+
     # don't add exit code check in pmode, as it causes failure. (exit code
     # is from mpirun not tool)
     # if any problem occurs relate to an exit code, it will be caught in
@@ -260,27 +262,29 @@ TOOLTEST() {
         actual_sorted=actual_sorted
         sort $expect -o $expect_sorted
         sort $actual -o $actual_sorted
+
         # remove "EXIT CODE:" line from expect file. test for exit code
         # is done by serial mode.
         grep -v "EXIT CODE:" $expect_sorted > $expect_sorted.noexit
         mv $expect_sorted.noexit $expect_sorted
-    if $CMP $expect_sorted $actual_sorted; then
-        echo " PASSED"
-    else
-        echo "*FAILED*"
-        nerrors="`expr $nerrors + 1`"
-        if test yes = "$verbose"; then
-        echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
-        $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
-        echo "====The actual output ($actual_sav)"
-        sed 's/^/    /' < $actual_sav
-        echo "====The actual stderr ($actual_err_sav)"
-        sed 's/^/    /' < $actual_err_sav
-        echo "====End of actual stderr ($actual_err_sav)"
-        echo ""
+
+        if $CMP $expect_sorted $actual_sorted; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            nerrors="`expr $nerrors + 1`"
+            if test yes = "$verbose"; then
+                echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
+                $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
+                echo "====The actual output ($actual_sav)"
+                sed 's/^/    /' < $actual_sav
+                echo "====The actual stderr ($actual_err_sav)"
+                sed 's/^/    /' < $actual_err_sav
+                echo "====End of actual stderr ($actual_err_sav)"
+                echo ""
+            fi
         fi
     fi
-    fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
@@ -306,18 +310,20 @@ TOOLTEST_ERR() {
     # Run test.
     TESTING $H5DIFF $@
     (
-    #echo "#############################"
-    #echo "Expected output for '$H5DIFF $@'"
-    #echo "#############################"
-    cd $TESTDIR
-    eval $ENVCMD $RUNCMD $H5DIFF_BIN "$@"
+        #echo "#############################"
+        #echo "Expected output for '$H5DIFF $@'"
+        #echo "#############################"
+        cd $TESTDIR
+        eval $ENVCMD $RUNCMD $H5DIFF_BIN "$@"
     ) >$actual 2>$actual_err
     EXIT_CODE=$?
+
     # save actual and actual_err in case they are needed later.
     cp $actual $actual_sav
     STDOUT_FILTER $actual
     cp $actual_err $actual_err_sav
     STDERR_FILTER $actual_err
+
     # don't add exit code check in pmode, as it causes failure. (exit code
     # is from mpirun not tool)
     # if any problem occurs relate to an exit code, it will be caught in
@@ -348,23 +354,24 @@ TOOLTEST_ERR() {
         sort $expect_err -o $expect_sorted
         sort $actual_err -o $actual_sorted
         mv $expect_sorted.noexit $expect_sorted
-    if $CMP $expect_sorted $actual_sorted; then
-        echo " PASSED"
-    else
-        echo "*FAILED*"
-        nerrors="`expr $nerrors + 1`"
-        if test yes = "$verbose"; then
-        echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
-        $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
-        echo "====The actual output ($actual_sav)"
-        sed 's/^/    /' < $actual_sav
-        echo "====The actual stderr ($actual_err_sav)"
-        sed 's/^/    /' < $actual_err_sav
-        echo "====End of actual stderr ($actual_err_sav)"
-        echo ""
+
+        if $CMP $expect_sorted $actual_sorted; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            nerrors="`expr $nerrors + 1`"
+            if test yes = "$verbose"; then
+                echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
+                $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
+                echo "====The actual output ($actual_sav)"
+                sed 's/^/    /' < $actual_sav
+                echo "====The actual stderr ($actual_err_sav)"
+                sed 's/^/    /' < $actual_err_sav
+                echo "====End of actual stderr ($actual_err_sav)"
+                echo ""
+            fi
         fi
     fi
-    fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c
index bdc2ddc..173a5ce 100644
--- a/tools/test/h5diff/h5diffgentest.c
+++ b/tools/test/h5diff/h5diffgentest.c
@@ -31,7 +31,7 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024);
  *
  * Purpose: generate files for h5diff testing
  *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: November 12, 2003
  *
@@ -8035,7 +8035,6 @@ void test_double_epsilon(const char *fname1, const char *fname2)
 {
     hid_t    fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID;
     hsize_t  dims1[2] = { 4, 7 };
-    hsize_t  dims2[2] = { 4, 7 };
     double   wdata[4][7];
     int i, j;
 
diff --git a/tools/test/h5diff/testfiles/h5diff_830.txt b/tools/test/h5diff/testfiles/h5diff_830.txt
new file mode 100644
index 0000000..8f00d8b
--- /dev/null
+++ b/tools/test/h5diff/testfiles/h5diff_830.txt
@@ -0,0 +1,30 @@
+dataset: </g1/array3D> and </g1/array3D>
+size:           [4x3x2]           [4x3x2]
+position        array3D         array3D         difference          
+------------------------------------------------------------
+[ 0 0 0 ]          1               0               1              
+[ 0 0 0 ]          2               0               2              
+[ 0 0 0 ]          3               0               3              
+[ 0 0 1 ]          4               0               4              
+[ 0 0 1 ]          5               0               5              
+[ 0 0 1 ]          6               0               6              
+[ 0 2 0 ]          13              0               13             
+[ 0 2 0 ]          14              0               14             
+[ 0 2 0 ]          15              0               15             
+[ 0 2 1 ]          16              0               16             
+[ 0 2 1 ]          17              0               17             
+[ 0 2 1 ]          18              0               18             
+[ 2 0 0 ]          37              0               37             
+[ 2 0 0 ]          38              0               38             
+[ 2 0 0 ]          39              0               39             
+[ 2 0 1 ]          40              0               40             
+[ 2 0 1 ]          41              0               41             
+[ 2 0 1 ]          42              0               42             
+[ 2 2 0 ]          49              0               49             
+[ 2 2 0 ]          50              0               50             
+[ 2 2 0 ]          51              0               51             
+[ 2 2 1 ]          52              0               52             
+[ 2 2 1 ]          53              0               53             
+[ 2 2 1 ]          54              0               54             
+24 differences found
+EXIT CODE: 1
diff --git a/tools/test/h5diff/testh5diff.sh.in b/tools/test/h5diff/testh5diff.sh.in
index 4e622ee..587c340 100644
--- a/tools/test/h5diff/testh5diff.sh.in
+++ b/tools/test/h5diff/testh5diff.sh.in
@@ -354,6 +354,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_710.txt
 $SRC_H5DIFF_TESTFILES/h5diff_80.txt
 $SRC_H5DIFF_TESTFILES/h5diff_800.txt
 $SRC_H5DIFF_TESTFILES/h5diff_801.txt
+$SRC_H5DIFF_TESTFILES/h5diff_830.txt
 $SRC_H5DIFF_TESTFILES/h5diff_90.txt
 $SRC_H5DIFF_TESTFILES/h5diff_8625.txt
 $SRC_H5DIFF_TESTFILES/h5diff_8639.txt
@@ -500,18 +501,20 @@ TOOLTEST() {
     # Run test.
     TESTING $H5DIFF $@
     (
-    #echo "#############################"
-    #echo "Expected output for '$H5DIFF $@'"
-    #echo "#############################"
-    cd $TESTDIR
-    eval $RUNCMD $H5DIFF_BIN "$@"
+        #echo "#############################"
+        #echo "Expected output for '$H5DIFF $@'"
+        #echo "#############################"
+        cd $TESTDIR
+        eval $RUNCMD $H5DIFF_BIN "$@"
     ) >$actual 2>$actual_err
     EXIT_CODE=$?
+
     # save actual and actual_err in case they are needed later.
     cp $actual $actual_sav
     STDOUT_FILTER $actual
     cp $actual_err $actual_err_sav
     STDERR_FILTER $actual_err
+
     # don't add exit code check in pmode, as it causes failure. (exit code
     # is from mpirun not tool)
     # if any problem occurs relate to an exit code, it will be caught in
@@ -545,23 +548,24 @@ TOOLTEST() {
         # is done by serial mode.
         grep -v "EXIT CODE:" $expect_sorted > $expect_sorted.noexit
         mv $expect_sorted.noexit $expect_sorted
-    if $CMP $expect_sorted $actual_sorted; then
-        echo " PASSED"
-    else
-        echo "*FAILED*"
-        nerrors="`expr $nerrors + 1`"
-        if test yes = "$verbose"; then
-        echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
-        $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
-        echo "====The actual output ($actual_sav)"
-        sed 's/^/    /' < $actual_sav
-        echo "====The actual stderr ($actual_err_sav)"
-        sed 's/^/    /' < $actual_err_sav
-        echo "====End of actual stderr ($actual_err_sav)"
-        echo ""
+
+        if $CMP $expect_sorted $actual_sorted; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            nerrors="`expr $nerrors + 1`"
+            if test yes = "$verbose"; then
+            echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
+            $DIFF $expect_sorted $actual_sorted |sed 's/^/    /'
+            echo "====The actual output ($actual_sav)"
+            sed 's/^/    /' < $actual_sav
+            echo "====The actual stderr ($actual_err_sav)"
+            sed 's/^/    /' < $actual_err_sav
+            echo "====End of actual stderr ($actual_err_sav)"
+            echo ""
+            fi
         fi
     fi
-    fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
@@ -1199,6 +1203,11 @@ TOOLTEST h5diff_800.txt -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/array /g1/array
 TOOLTEST h5diff_801.txt -v h5diff_dset1.h5 h5diff_dset3.h5 /g1/array /g1/array
 
 # ##############################################################################
+# # dataset subsets
+# ##############################################################################
+#TRILABS-227 TOOLTEST h5diff_830.txt --enable-error-stack -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/array3D[0,0,0;2,2,1;2,2,2;] /g1/array3D[0,0,0;2,2,1;2,2,2;]
+
+# ##############################################################################
 # VDS tests
 # ##############################################################################
 TOOLTEST h5diff_v1.txt -v 1_vds.h5 2_vds.h5
diff --git a/tools/test/h5dump/h5dump_plugin.sh.in b/tools/test/h5dump/h5dump_plugin.sh.in
index 6a00a16..d940ab3 100644
--- a/tools/test/h5dump/h5dump_plugin.sh.in
+++ b/tools/test/h5dump/h5dump_plugin.sh.in
@@ -181,8 +181,8 @@ TOOLTEST() {
     # Run test.
     TESTING $H5DUMP $@
     (
-    cd $TESTDIR
-      $ENVCMD $RUNSERIAL $H5DUMP_BIN "$@"
+        cd $TESTDIR
+        $ENVCMD $RUNSERIAL $H5DUMP_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -192,24 +192,24 @@ TOOLTEST() {
     STDERR_FILTER $actual_err
     cat $actual_err >> $actual
 
-  if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual > /dev/null 2>&1 ; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
+        rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
     fi
 
 }
diff --git a/tools/test/h5dump/h5dumpgentest.c b/tools/test/h5dump/h5dumpgentest.c
index 731e233..3bb6604 100644
--- a/tools/test/h5dump/h5dumpgentest.c
+++ b/tools/test/h5dump/h5dumpgentest.c
@@ -3964,7 +3964,7 @@ static void gent_char(void)
  *
  * Return: void
  *
- * Programmer: pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 28, 2003
  *
@@ -4404,7 +4404,7 @@ static void write_attr_in(hid_t loc_id,
  *
  * Return: void
  *
- * Programmer: pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 28, 2003
  *
@@ -4854,7 +4854,7 @@ static void write_dset_in(hid_t loc_id,
  *
  * Return: void
  *
- * Programmer: pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 19, 2003
  *
@@ -4923,7 +4923,7 @@ static void gent_attr_all(void)
  *
  * Purpose: utility function to write an attribute
  *
- * Programmer: pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 19, 2003
  *
@@ -4962,7 +4962,7 @@ int write_attr(hid_t loc_id, int rank, hsize_t *dims, const char *attr_name,
  *
  * Return:
  *
- * Programmer: pvn@ncsa.uiuc.edu
+ * Programmer: Pedro Vicente
  *
  * Date: May 27, 2003
  *
diff --git a/tools/test/h5dump/testh5dump.sh.in b/tools/test/h5dump/testh5dump.sh.in
index 53c8927..b69346e 100644
--- a/tools/test/h5dump/testh5dump.sh.in
+++ b/tools/test/h5dump/testh5dump.sh.in
@@ -465,14 +465,14 @@ TESTING() {
 TOOLTEST() {
     # check if caseless compare and diff requested
     if [ "$1" = ignorecase ]; then
-    caseless="-i"
-    # replace cmp with diff which runs much longer.
-    xCMP="$DIFF -i"
-    shift
+        caseless="-i"
+        # replace cmp with diff which runs much longer.
+        xCMP="$DIFF -i"
+        shift
     else
-    caseless=""
-    # stick with faster cmp if ignorecase is not requested.
-    xCMP="$CMP"
+        caseless=""
+        # stick with faster cmp if ignorecase is not requested.
+        xCMP="$CMP"
     fi
 
     expect="$TESTDIR/$1"
@@ -485,8 +485,8 @@ TOOLTEST() {
     # Run test.
     TESTING $DUMPER $@
     (
-    cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -495,24 +495,24 @@ TOOLTEST() {
     cp $actual_err $actual_err_sav
     STDERR_FILTER $actual_err
 
-  if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $xCMP $expect $actual > /dev/null 2>&1 ; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
+        rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
     fi
 
 }
@@ -534,41 +534,41 @@ TOOLTEST2() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
-    elif $CMP $expect $actual; then
-      if [ ! -f $expectdata ]; then
-      # Create the expect data file if it doesn't yet exist.
+        # Create the expect file if it doesn't yet exist.
         echo " CREATED"
-        cp $actualdata $expectdata
-        echo "    Expected data (*.exp) missing"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
         nerrors="`expr $nerrors + 1`"
-      elif $CMP $expectdata $actualdata; then
-        echo " PASSED"
-      else
+    elif $CMP $expect $actual; then
+        if [ ! -f $expectdata ]; then
+            # Create the expect data file if it doesn't yet exist.
+            echo " CREATED"
+            cp $actualdata $expectdata
+            echo "    Expected data (*.exp) missing"
+            nerrors="`expr $nerrors + 1`"
+        elif $CMP $expectdata $actualdata; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
+        fi
+    else
         echo "*FAILED*"
-        echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
         nerrors="`expr $nerrors + 1`"
-        test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
-      fi
-    else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actualdata $actual_err
+        rm -f $actual $actualdata $actual_err
     fi
 
 }
@@ -592,56 +592,55 @@ TOOLTEST2A() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
-    elif $CMP $expect $actual; then
-      if [ ! -f $expectdata ]; then
-      # Create the expect data file if it doesn't yet exist.
+        # Create the expect file if it doesn't yet exist.
         echo " CREATED"
-        cp $actualdata $expectdata
-        echo "    Expected data (*.exp) missing"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
         nerrors="`expr $nerrors + 1`"
-      elif $DIFF $expectdata $actualdata; then
-        if [ ! -f $expectmeta ]; then
-        # Create the expect meta file if it doesn't yet exist.
-          echo " CREATED"
-          cp $actualmeta $expectmeta
-          echo "    Expected metafile (*.ddl) missing"
-          nerrors="`expr $nerrors + 1`"
-        elif $CMP $expectmeta $actualmeta; then
-          echo " PASSED"
+    elif $CMP $expect $actual; then
+        if [ ! -f $expectdata ]; then
+            # Create the expect data file if it doesn't yet exist.
+            echo " CREATED"
+            cp $actualdata $expectdata
+            echo "    Expected data (*.exp) missing"
+            nerrors="`expr $nerrors + 1`"
+        elif $DIFF $expectdata $actualdata; then
+            if [ ! -f $expectmeta ]; then
+                # Create the expect meta file if it doesn't yet exist.
+                echo " CREATED"
+                cp $actualmeta $expectmeta
+                echo "    Expected metafile (*.ddl) missing"
+                nerrors="`expr $nerrors + 1`"
+            elif $CMP $expectmeta $actualmeta; then
+                echo " PASSED"
+            else
+                echo "*FAILED*"
+                echo "    Expected metafile (*.ddl) differs from actual metafile (*.txt)"
+                nerrors="`expr $nerrors + 1`"
+                test yes = "$verbose" && $DIFF $expectmeta $actualmeta |sed 's/^/    /'
+            fi
         else
-          echo "*FAILED*"
-          echo "    Expected metafile (*.ddl) differs from actual metafile (*.txt)"
-          nerrors="`expr $nerrors + 1`"
-          test yes = "$verbose" && $DIFF $expectmeta $actualmeta |sed 's/^/    /'
+            echo "*FAILED*"
+            echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
         fi
-      else
+    else
         echo "*FAILED*"
-        echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
         nerrors="`expr $nerrors + 1`"
-        test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
-      fi
-    else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actualdata $actual_err $actualmeta
+        rm -f $actual $actualdata $actual_err $actualmeta
     fi
-
 }
 
 # same as TOOLTEST2 but only compares the generated data file to the expected data file
@@ -658,28 +657,28 @@ TOOLTEST2B() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     if [ ! -f $expectdata ]; then
-    # Create the expect data file if it doesn't yet exist.
-      echo " CREATED"
-      cp $actualdata $expectdata
-      echo "    Expected data (*.exp) missing"
-      nerrors="`expr $nerrors + 1`"
+        # Create the expect data file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actualdata $expectdata
+        echo "    Expected data (*.exp) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expectdata $actualdata; then
-      echo " PASSED"
+        echo " PASSED"
     else
-      echo "*FAILED*"
-      echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actualdata $actual_err
+        rm -f $actual $actualdata $actual_err
     fi
 
 }
@@ -699,8 +698,8 @@ TOOLTEST3() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -719,23 +718,23 @@ TOOLTEST3() {
      $actual_err > $actual_ext
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
 
 }
@@ -757,8 +756,8 @@ TOOLTEST4() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $ENVCMD $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $ENVCMD $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -777,30 +776,30 @@ TOOLTEST4() {
      $actual_err > $actual_ext
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     if $CMP $expect_err $actual_ext; then
-      echo " PASSED"
-     else
-      echo "*FAILED*"
-      echo "    Expected result (*.err) differs from actual result (*.oerr)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
-     fi
+        if $CMP $expect_err $actual_ext; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected result (*.err) differs from actual result (*.oerr)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
+        fi
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
 
 }
@@ -822,8 +821,8 @@ TOOLTEST5() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $ENVCMD $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $ENVCMD $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -842,33 +841,33 @@ TOOLTEST5() {
      $actual_err > $actual_ext
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     if $CMP $expect_err $actual_ext; then
-      echo " PASSED"
-     else
-      echo "*FAILED*"
-      echo "    Expected result (*.err) differs from actual result (*.oerr)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
-     fi
+        if $CMP $expect_err $actual_ext; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected result (*.err) differs from actual result (*.oerr)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
+        fi
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
-
 }
+
 # ADD_HELP_TEST
 TOOLTEST_HELP() {
 
@@ -880,27 +879,27 @@ TOOLTEST_HELP() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     if [ ! -f $expectdata ]; then
-    # Create the expect data file if it doesn't yet exist.
-      echo " CREATED"
-      cp $actual $expect-CREATED
-      echo "    Expected output (*.txt) missing"
-      nerrors="`expr $nerrors + 1`"
+        # Create the expect data file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect-CREATED
+        echo "    Expected output (*.txt) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-      echo " PASSED"
+        echo " PASSED"
     else
-      echo "*FAILED*"
-      echo "    Expected output (*.txt) differs from actual output (*.out)"
-      nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        echo "    Expected output (*.txt) differs from actual output (*.out)"
+        nerrors="`expr $nerrors + 1`"
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actual_err
+        rm -f $actual $actual_err
     fi
 
 }
@@ -920,14 +919,16 @@ GREPTEST()
     # Run test.
     TESTING $DUMPER -p $@
     (
-      cd $TESTDIR
-      $ENVCMD $RUNSERIAL $DUMPER_BIN -p "$@"
+        cd $TESTDIR
+        $ENVCMD $RUNSERIAL $DUMPER_BIN -p "$@"
     ) >$actual 2>$actual_err
+
     if [ "$txttype" = "ERRTXT" ]; then
         $GREP "$expectdata" $actual_err > /dev/null
     else
         $GREP "$expectdata" $actual > /dev/null
     fi
+
     if [ $? -eq 0 ]; then
         echo " PASSED"
     else
@@ -937,7 +938,7 @@ GREPTEST()
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actual_err
+        rm -f $actual $actual_err
     fi
 }
 
@@ -956,14 +957,16 @@ GREPTEST2()
     # Run test.
     TESTING $DUMPER -p $@
     (
-      cd $TESTDIR
-      $ENVCMD $RUNSERIAL $DUMPER_BIN -p "$@"
+        cd $TESTDIR
+        $ENVCMD $RUNSERIAL $DUMPER_BIN -p "$@"
     ) >$actual 2>$actual_err
+
     if [ "$txttype" = "ERRTXT" ]; then
         $GREP "$expectdata" $actual_err > /dev/null
     else
         $GREP "$expectdata" $actual > /dev/null
     fi
+
     if [ $? -eq 0 ]; then
         echo " PASSED"
     else
@@ -973,21 +976,21 @@ GREPTEST2()
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actual_err
+        rm -f $actual $actual_err
     fi
 }
 
 # Print a "SKIP" message
 SKIP() {
-   TESTING $DUMPER $@
+    TESTING $DUMPER $@
     echo  " -SKIP-"
 }
 
 # Print a line-line message left justified in a field of 70 characters
 #
 PRINT_H5DIFF() {
- SPACES="                                                               "
- echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 
@@ -997,10 +1000,11 @@ DIFFTEST()
 {
     PRINT_H5DIFF  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5DIFF_BIN "$@" -q
+        cd $TESTDIR
+        $RUNSERIAL $H5DIFF_BIN "$@" -q
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
@@ -1014,8 +1018,8 @@ DIFFTEST()
 # beginning with the word "Verifying".
 #
 PRINT_H5IMPORT() {
- SPACES="                                                               "
- echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 # Call the h5import tool
@@ -1025,15 +1029,16 @@ IMPORTTEST()
     # remove the output hdf5 file if it exists
     hdf5_file="$TESTDIR/$5"
     if [ -f $hdf5_file ]; then
-     rm -f $hdf5_file
+        rm -f $hdf5_file
     fi
 
     PRINT_H5IMPORT  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5IMPORT_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $H5IMPORT_BIN "$@"
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
@@ -1138,9 +1143,9 @@ TOOLTEST tcomp-4.ddl --enable-error-stack tcompound_complex.h5
 TOOLTEST tcompound_complex2.ddl --enable-error-stack tcompound_complex2.h5
 # tests for bitfields and opaque data types
 if test $WORDS_BIGENDIAN != "yes"; then
-TOOLTEST tbitnopaque_le.ddl --enable-error-stack tbitnopaque.h5
+    TOOLTEST tbitnopaque_le.ddl --enable-error-stack tbitnopaque.h5
 else
-TOOLTEST tbitnopaque_be.ddl --enable-error-stack tbitnopaque.h5
+    TOOLTEST tbitnopaque_be.ddl --enable-error-stack tbitnopaque.h5
 fi
 
 #test for the nested compound type
@@ -1318,12 +1323,12 @@ TOOLTEST tallfilters.ddl --enable-error-stack -H -p -d all  tfilters.h5
 TOOLTEST tuserfilter.ddl --enable-error-stack -H  -p -d myfilter  tfilters.h5
 
 if test $USE_FILTER_DEFLATE = "yes" ; then
-  # data read internal filters
-  TOOLTEST treadintfilter.ddl --enable-error-stack -d deflate -d shuffle -d fletcher32 -d nbit -d scaleoffset tfilters.h5
-  if test $USE_FILTER_SZIP = "yes"; then
-    # data read
-    TOOLTEST treadfilter.ddl --enable-error-stack -d all -d szip tfilters.h5
-  fi
+    # data read internal filters
+    TOOLTEST treadintfilter.ddl --enable-error-stack -d deflate -d shuffle -d fletcher32 -d nbit -d scaleoffset tfilters.h5
+    if test $USE_FILTER_SZIP = "yes"; then
+        # data read
+        TOOLTEST treadfilter.ddl --enable-error-stack -d all -d szip tfilters.h5
+    fi
 fi
 
 # test for displaying objects with very long names
@@ -1380,9 +1385,9 @@ TOOLTEST   tbin4.ddl --enable-error-stack -d double  -b FILE -o out4.bin    tbin
 
 # Clean up binary output files
 if test -z "$HDF5_NOCLEANUP"; then
- rm -f out[1-4].bin
- rm -f out1.h5
- rm -f out3.h5
+    rm -f out[1-4].bin
+    rm -f out1.h5
+    rm -f out3.h5
 fi
 
 # test for dataset region references
@@ -1394,7 +1399,7 @@ TOOLTEST2 tbinregR.exp --enable-error-stack -d /Dataset1 -s 0 -R -y -o tbinregR.
 
 # Clean up text output files
 if test -z "$HDF5_NOCLEANUP"; then
- rm -f tbinregR.txt
+    rm -f tbinregR.txt
 fi
 
 # tests for group creation order
diff --git a/tools/test/h5dump/testh5dumppbits.sh.in b/tools/test/h5dump/testh5dumppbits.sh.in
index febce2c..ff0659a 100644
--- a/tools/test/h5dump/testh5dumppbits.sh.in
+++ b/tools/test/h5dump/testh5dumppbits.sh.in
@@ -236,26 +236,25 @@ TOOLTEST() {
     cp $actual_err $actual_err_sav
     STDERR_FILTER $actual_err
 
-  if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-   nerrors="`expr $nerrors + 1`"
-   test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
+        rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
     fi
-
 }
 
 
@@ -274,36 +273,36 @@ TOOLTEST2() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
-    elif $CMP $expect $actual; then
-      if [ ! -f $expectdata ]; then
-      # Create the expect data file if it doesn't yet exist.
+        # Create the expect file if it doesn't yet exist.
         echo " CREATED"
-        cp $actualdata $expectdata
-        echo "    Expected data (*.exp) missing"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
         nerrors="`expr $nerrors + 1`"
-      elif $CMP $expectdata $actualdata; then
-        echo " PASSED"
-      else
+    elif $CMP $expect $actual; then
+        if [ ! -f $expectdata ]; then
+            # Create the expect data file if it doesn't yet exist.
+            echo " CREATED"
+            cp $actualdata $expectdata
+            echo "    Expected data (*.exp) missing"
+            nerrors="`expr $nerrors + 1`"
+        elif $CMP $expectdata $actualdata; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
+        fi
+    else
         echo "*FAILED*"
-        echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
         nerrors="`expr $nerrors + 1`"
-        test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
-      fi
-    else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
@@ -328,8 +327,8 @@ TOOLTEST3() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -348,23 +347,23 @@ TOOLTEST3() {
      $actual_err > $actual_ext
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
 
 }
@@ -385,8 +384,8 @@ TOOLTEST4() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -405,30 +404,30 @@ TOOLTEST4() {
      $actual_err > $actual_ext
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     if $CMP $expect_err $actual_ext; then
-      echo " PASSED"
-     else
-      echo "*FAILED*"
-      echo "    Expected result (*.err) differs from actual result (*.oerr)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
-     fi
+        if $CMP $expect_err $actual_ext; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected result (*.err) differs from actual result (*.oerr)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
+        fi
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
 
 }
@@ -442,8 +441,8 @@ SKIP() {
 # Print a line-line message left justified in a field of 70 characters
 #
 PRINT_H5DIFF() {
- SPACES="                                                               "
- echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 
@@ -453,10 +452,11 @@ DIFFTEST()
 {
     PRINT_H5DIFF  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5DIFF_BIN "$@" -q
+        cd $TESTDIR
+        $RUNSERIAL $H5DIFF_BIN "$@" -q
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
@@ -470,8 +470,8 @@ DIFFTEST()
 # beginning with the word "Verifying".
 #
 PRINT_H5IMPORT() {
- SPACES="                                                               "
- echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 # Call the h5import tool
@@ -481,22 +481,22 @@ IMPORTTEST()
     # remove the output hdf5 file if it exists
     hdf5_file="$TESTDIR/$5"
     if [ -f $hdf5_file ]; then
-     rm -f $hdf5_file
+        rm -f $hdf5_file
     fi
 
     PRINT_H5IMPORT  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5IMPORT_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $H5IMPORT_BIN "$@"
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
     else
          echo " PASSED"
     fi
-
 }
 
 
diff --git a/tools/test/h5dump/testh5dumpvds.sh.in b/tools/test/h5dump/testh5dumpvds.sh.in
index f89234e..29ff238 100644
--- a/tools/test/h5dump/testh5dumpvds.sh.in
+++ b/tools/test/h5dump/testh5dumpvds.sh.in
@@ -205,8 +205,8 @@ TOOLTEST() {
     # Run test.
     TESTING $DUMPER $@
     (
-    cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -216,26 +216,25 @@ TOOLTEST() {
     STDERR_FILTER $actual_err
     cat $actual_err >> $actual
 
-  if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-   nerrors="`expr $nerrors + 1`"
-   test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
+        rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
     fi
-
 }
 
 
@@ -254,42 +253,42 @@ TOOLTEST2() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
     cat $actual_err >> $actual
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
-    elif $CMP $expect $actual; then
-      if [ ! -f $expectdata ]; then
-      # Create the expect data file if it doesn't yet exist.
+        # Create the expect file if it doesn't yet exist.
         echo " CREATED"
-        cp $actualdata $expectdata
-        echo "    Expected data (*.exp) missing"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
         nerrors="`expr $nerrors + 1`"
-      elif $CMP $expectdata $actualdata; then
-        echo " PASSED"
-      else
+    elif $CMP $expect $actual; then
+        if [ ! -f $expectdata ]; then
+            # Create the expect data file if it doesn't yet exist.
+            echo " CREATED"
+            cp $actualdata $expectdata
+            echo "    Expected data (*.exp) missing"
+            nerrors="`expr $nerrors + 1`"
+        elif $CMP $expectdata $actualdata; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
+        fi
+    else
         echo "*FAILED*"
-        echo "    Expected datafile (*.exp) differs from actual datafile (*.txt)"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
         nerrors="`expr $nerrors + 1`"
-        test yes = "$verbose" && $DIFF $expectdata $actualdata |sed 's/^/    /'
-      fi
-    else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-     rm -f $actual $actualdata $actual_err
+        rm -f $actual $actualdata $actual_err
     fi
 
 }
@@ -309,8 +308,8 @@ TOOLTEST3() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -326,27 +325,27 @@ TOOLTEST3() {
         -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
         -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
         -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
-     $actual_err > $actual_ext
+        $actual_err > $actual_ext
     cat $actual_ext >> $actual
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.ddl) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ddl) missing"
+        nerrors="`expr $nerrors + 1`"
     elif $CMP $expect $actual; then
-     echo " PASSED"
+        echo " PASSED"
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
 
 }
@@ -367,8 +366,8 @@ TOOLTEST4() {
     # Run test.
     TESTING $DUMPER $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
     # save actual and actual_err in case they are needed later.
@@ -384,47 +383,46 @@ TOOLTEST4() {
         -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
         -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
         -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
-     $actual_err > $actual_ext
+        $actual_err > $actual_ext
     #cat $actual_ext >> $actual
 
     if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-     echo " CREATED"
-     cp $actual $expect
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
     elif $CMP $expect $actual; then
-     if $CMP $expect_err $actual_ext; then
-      echo " PASSED"
-    else
-     echo "*FAILED*"
-     echo "    Expected result (*.err) differs from actual result (*.oerr)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
-    fi
+        if $CMP $expect_err $actual_ext; then
+            echo " PASSED"
+        else
+            echo "*FAILED*"
+            echo "    Expected result (*.err) differs from actual result (*.oerr)"
+            nerrors="`expr $nerrors + 1`"
+            test yes = "$verbose" && $DIFF $expect_err $actual_ext |sed 's/^/    /'
+        fi
     else
-     echo "*FAILED*"
-     echo "    Expected result (*.ddl) differs from actual result (*.out)"
-     nerrors="`expr $nerrors + 1`"
-     test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.ddl) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
     fi
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-   rm -f $actual $actual_err $actual_sav $actual_err_sav
+        rm -f $actual $actual_err $actual_sav $actual_err_sav
     fi
-
 }
 
 # Print a "SKIP" message
 SKIP() {
-   TESTING $DUMPER $@
+    TESTING $DUMPER $@
     echo  " -SKIP-"
 }
 
 # Print a line-line message left justified in a field of 70 characters
 #
 PRINT_H5DIFF() {
- SPACES="                                                               "
- echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5diff $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 
@@ -434,25 +432,25 @@ DIFFTEST()
 {
     PRINT_H5DIFF  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5DIFF_BIN "$@" -q
+        cd $TESTDIR
+        $RUNSERIAL $H5DIFF_BIN "$@" -q
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
     else
          echo " PASSED"
     fi
-
 }
 
 # Print a line-line message left justified in a field of 70 characters
 # beginning with the word "Verifying".
 #
 PRINT_H5IMPORT() {
- SPACES="                                                               "
- echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo " Running h5import $* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 # Call the h5import tool
@@ -462,22 +460,22 @@ IMPORTTEST()
     # remove the output hdf5 file if it exists
     hdf5_file="$TESTDIR/$5"
     if [ -f $hdf5_file ]; then
-     rm -f $hdf5_file
+        rm -f $hdf5_file
     fi
 
     PRINT_H5IMPORT  $@
     (
-  cd $TESTDIR
-  $RUNSERIAL $H5IMPORT_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $H5IMPORT_BIN "$@"
     )
     RET=$?
+
     if [ $RET != 0 ] ; then
          echo "*FAILED*"
          nerrors="`expr $nerrors + 1`"
     else
          echo " PASSED"
     fi
-
 }
 
 
@@ -491,7 +489,7 @@ COPY_TESTFILES_TO_TESTDIR
 
 ####### test for dataset vds ######
 
-  # Data read
+# Data read
 if test $USE_FILTER_DEFLATE = "yes" ; then
     TOOLTEST tvds-1.ddl --enable-error-stack 1_vds.h5
     TOOLTEST tvds-2.ddl --enable-error-stack 2_vds.h5
@@ -504,7 +502,7 @@ if test $USE_FILTER_DEFLATE = "yes" ; then
     TOOLTEST vds-gap2.ddl --vds-gap-size=2 --enable-error-stack vds-eiger.h5
 fi
 
-  # Layout read
+# Layout read
 if test $USE_FILTER_DEFLATE = "yes" ; then
     TOOLTEST tvds_layout-1.ddl -p --enable-error-stack 1_vds.h5
     TOOLTEST tvds_layout-2.ddl -p --enable-error-stack 2_vds.h5
diff --git a/tools/test/h5dump/testh5dumpxml.sh.in b/tools/test/h5dump/testh5dumpxml.sh.in
index f7af300..52a13c2 100644
--- a/tools/test/h5dump/testh5dumpxml.sh.in
+++ b/tools/test/h5dump/testh5dumpxml.sh.in
@@ -262,36 +262,35 @@ TOOLTEST() {
     # Run test.
     TESTING $DUMPER $@
     (
-    cd $TESTDIR
-      $RUNSERIAL $DUMPER_BIN "$@"
+        cd $TESTDIR
+        $RUNSERIAL $DUMPER_BIN "$@"
     ) >$actual 2>$actual_err
 
-
    if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-    echo " CREATED"
-     cp $actual $expect
-     echo "    Expected result (*.xml) missing"
-     nerrors="`expr $nerrors + 1`"
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.xml) missing"
+        nerrors="`expr $nerrors + 1`"
    elif  $CMP $expect $actual; then
-      echo " PASSED"
+        echo " PASSED"
    else
-      echo "*FAILED*"
-      echo "    Expected result (*.xml) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+        echo "*FAILED*"
+        echo "    Expected result (*.xml) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
    fi
 
    # Clean up output file
    if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_err
+        rm -f $actual $actual_err
    fi
 }
 
 # Print a "SKIP" message
 SKIP() {
-         TESTING $DUMPER $@
-          echo  " -SKIP-"
+    TESTING $DUMPER $@
+    echo  " -SKIP-"
 }
 
 
diff --git a/tools/test/h5ls/h5ls_plugin.sh.in b/tools/test/h5ls/h5ls_plugin.sh.in
index c89269d..28370e6 100644
--- a/tools/test/h5ls/h5ls_plugin.sh.in
+++ b/tools/test/h5ls/h5ls_plugin.sh.in
@@ -139,8 +139,8 @@ CLEAN_TESTFILES_AND_TESTDIR()
 # Print a $* message left justified in a field of 70 characters
 #
 MESSAGE() {
-   SPACES="                                                               "
-   echo "$* $SPACES" | cut -c1-70 | tr -d '\012'
+    SPACES="                                                               "
+    echo "$* $SPACES" | cut -c1-70 | tr -d '\012'
 }
 
 # Print a line-line message left justified in a field of 70 characters
@@ -206,7 +206,7 @@ TOOLTEST() {
             echo ""
         fi
     elif [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
+        # Create the expect file if it doesn't yet exist.
         echo " CREATED"
         cp $actual $expect
         echo "    Expected result (*.ls) missing"
diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c
index ab0dbb7..2666e95 100644
--- a/tools/test/h5repack/h5repacktst.c
+++ b/tools/test/h5repack/h5repacktst.c
@@ -3872,7 +3872,7 @@ out:
 *
 * Purpose: write datasets in LOC_ID
 *
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+* Programmer: Pedro Vicente
 *
 * Date: November 12, 2003
 *
@@ -4736,7 +4736,7 @@ out:
 *
 * Purpose: write attributes in LOC_ID (dataset, group, named datatype)
 *
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+* Programmer: Pedro Vicente
 *
 * Date: November 12, 2003
 *
@@ -5927,7 +5927,7 @@ out:
 *
 * Purpose: utility function to create and write a dataset in LOC_ID
 *
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+* Programmer: Pedro Vicente
 *
 * Date: November 12, 2003
 *
@@ -5963,7 +5963,7 @@ out:
 *
 * Purpose: utility function to create and write a dataset in LOC_ID
 *
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+* Programmer: Pedro Vicente
 *
 * Date: November 12, 2003
 *
@@ -6011,7 +6011,7 @@ out:
 *
 * Purpose: utility function to write an attribute in LOC_ID
 *
-* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+* Programmer: Pedro Vicente
 *
 * Date: November 12, 2003
 *
diff --git a/tools/test/misc/h5perf_gentest.c b/tools/test/misc/h5perf_gentest.c
index f50e5fb..511a9e2 100644
--- a/tools/test/misc/h5perf_gentest.c
+++ b/tools/test/misc/h5perf_gentest.c
@@ -14,7 +14,7 @@
   creates a large number of attributes, groups, and datasets by specifying
   -a, -g, -d options respectively. Using "-h" option to see details.
 
-  Programmer:  Peter Cao <xcao@hdfgroup.org>, Jan. 2013
+  Programmer:  Peter Cao, Jan. 2013
  ****************************************************************************/
 
 #include "hdf5.h"
@@ -128,7 +128,7 @@ int main (int argc, char *argv[])
 
   Return:  Non-negative on success/Negative on failure
 
-  Programmer:  Peter Cao <xcao@hdfgroup.org>, Jan. 2013
+  Programmer:  Peter Cao, Jan. 2013
  ****************************************************************************/
 herr_t create_perf_test_file(const char *fname, int ngrps, int ndsets,
        int nattrs, hsize_t nrows, hsize_t dim0, hsize_t chunk, int vlen,
diff --git a/tools/test/misc/h5repart_gentest.c b/tools/test/misc/h5repart_gentest.c
index bd94104..520069f 100644
--- a/tools/test/misc/h5repart_gentest.c
+++ b/tools/test/misc/h5repart_gentest.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Raymond Lu<slu@ncsa.uiuc.edu>
+ * Programmer:  Raymond Lu
  *              June 1, 2005
  *
  * Purpose:     Generate a family file of 1024 bytes for each member
diff --git a/tools/test/misc/testh5mkgrp.sh.in b/tools/test/misc/testh5mkgrp.sh.in
index 3ad1f71..7dc8155 100644
--- a/tools/test/misc/testh5mkgrp.sh.in
+++ b/tools/test/misc/testh5mkgrp.sh.in
@@ -13,7 +13,7 @@
 #
 # Tests for the h5mkgrp tool
 #
-# Quincey Koziol (koziol@hdfgroup.org)
+# Quincey Koziol
 # Tuesday, February 13, 2007
 #
 
@@ -150,10 +150,11 @@ TOOLTEST()
 {
     TESTING $H5MKGRP $@
     (
-    cd $TESTDIR
-    $RUNSERIAL $H5MKGRP_BIN $@
+        cd $TESTDIR
+        $RUNSERIAL $H5MKGRP_BIN $@
     ) > output.out
     RET=$?
+
     if [ $RET != 0 ]; then
         echo "*FAILED*"
         echo "failed result is:"
@@ -164,7 +165,7 @@ TOOLTEST()
 
         # Clean up output file
         if test -z "$HDF5_NOCLEANUP"; then
-           rm -f output.out
+            rm -f output.out
         fi
     fi
 }
@@ -181,8 +182,8 @@ H5LSTEST()
     # any unexpected output from that stream too.
     VERIFY_H5LS  $@
     (
-      cd $TESTDIR
-      $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
+        cd $TESTDIR
+        $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
     ) 2>&1 |sed 's/Modified:.*/Modified:  XXXX-XX-XX XX:XX:XX XXX/' >$actual
 
     # save actual in case it is needed later.
@@ -190,25 +191,25 @@ H5LSTEST()
     STDOUT_FILTER $actual
     STDERR_FILTER $actual
 
-   if [ ! -f $expect ]; then
-      # Create the expect file if it doesn't yet exist.
-      echo " CREATED"
-      cp $actual $expect
-      echo "    Expected result (*.ls) missing"
-      nerrors="`expr $nerrors + 1`"
-   elif $CMP $expect $actual; then
-      echo " PASSED"
-   else
-      echo "*FAILED*"
-      echo "    Expected result (*.ls) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
-   fi
-
-   # Clean up output file
-   if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_sav
-   fi
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.ls) missing"
+        nerrors="`expr $nerrors + 1`"
+    elif $CMP $expect $actual; then
+        echo " PASSED"
+    else
+        echo "*FAILED*"
+        echo "    Expected result (*.ls) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+    fi
+
+    # Clean up output file
+    if test -z "$HDF5_NOCLEANUP"; then
+        rm -f $actual $actual_sav
+    fi
 }
 
 # Single run of tool
@@ -258,30 +259,30 @@ CMPTEST()
     # any unexpected output from that stream too.
     TESTING $H5MKGRP $@
     (
-    cd $TESTDIR
-    $RUNSERIAL $H5MKGRP_BIN $@
+        cd $TESTDIR
+        $RUNSERIAL $H5MKGRP_BIN $@
     ) >$actual 2>$actual_err
     cat $actual_err >> $actual
 
-   if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-      echo " CREATED"
-      cp $actual $expect
-      echo "    Expected result (*.txt) missing"
-      nerrors="`expr $nerrors + 1`"
-   elif $CMP $expect $actual; then
-      echo " PASSED"
-   else
-      echo "*FAILED*"
-      echo "    Expected result (*.txt) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
-   fi
-
-   # Clean up output file
-   if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_err
-   fi
+    if [ ! -f $expect ]; then
+        # Create the expect file if it doesn't yet exist.
+        echo " CREATED"
+        cp $actual $expect
+        echo "    Expected result (*.txt) missing"
+        nerrors="`expr $nerrors + 1`"
+    elif $CMP $expect $actual; then
+        echo " PASSED"
+    else
+        echo "*FAILED*"
+        echo "    Expected result (*.txt) differs from actual result (*.out)"
+        nerrors="`expr $nerrors + 1`"
+        test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
+    fi
+
+    # Clean up output file
+    if test -z "$HDF5_NOCLEANUP"; then
+        rm -f $actual $actual_err
+    fi
 }
 
 ##############################################################################
diff --git a/tools/test/perform/iopipe.c b/tools/test/perform/iopipe.c
index de56281..bb74a1b 100644
--- a/tools/test/perform/iopipe.c
+++ b/tools/test/perform/iopipe.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Robb Matzke <matzke@llnl.gov>
+ * Programmer:  Robb Matzke
  *              Thursday, March 12, 1998
  */
 
diff --git a/tools/test/perform/overhead.c b/tools/test/perform/overhead.c
index 58558a5..bb3aff5 100644
--- a/tools/test/perform/overhead.c
+++ b/tools/test/perform/overhead.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:  Robb Matzke <matzke@llnl.gov>
+ * Programmer:  Robb Matzke
  *              Monday, September 28, 1998
  *
  * Purpose:  Creates a chunked dataset and measures the storage overhead.
diff --git a/tools/test/perform/perf_meta.c b/tools/test/perform/perf_meta.c
index b56f074..77248cc 100644
--- a/tools/test/perform/perf_meta.c
+++ b/tools/test/perform/perf_meta.c
@@ -12,7 +12,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 /*
- * Programmer:	Raymond Lu <slu@ncsa.uiuc.edu>
+ * Programmer:	Raymond Lu
  *		Friday, Oct 3, 2004
  *
  * Purpose:	Tests performance of metadata