Fix new codespell issues (#2521) (#2530)

* Fix new codespell issues (#2521)

* Fix new codespell issues

* Have codespell ignore ./config/sanitizer/sanitizers.cmake

* Fix typo in genparser.

---------

Co-authored-by: Mark Kittisopikul <mkitti@users.noreply.github.com>

13 files changed, 14 insertions, 14 deletions

diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml
index 1bd7ebc..3ceda82 100644
--- a/.github/workflows/codespell.yml
+++ b/.github/workflows/codespell.yml
@@ -11,5 +11,5 @@ jobs:
       - uses: actions/checkout@v3
       - uses: codespell-project/actions-codespell@master
         with:
-          skip: ./bin/trace,./hl/tools/h5watch/h5watch.c,./tools/test/h5jam/tellub.c,./config/sanitizer/LICENSE,./tools/test/h5repack/testfiles/*.dat
-          ignore_words_list: isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn't,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,minnum,ro,oce,ot,msdos
+          skip: ./bin/trace,./hl/tools/h5watch/h5watch.c,./tools/test/h5jam/tellub.c,./config/sanitizer/LICENSE,./config/sanitizer/sanitizers.cmake,./tools/test/h5repack/testfiles/*.dat
+          ignore_words_list: isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn't,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,ake,gord,numer,ro,oce,ot,msdos
diff --git a/bin/genparser b/bin/genparser
index 9ea3152..bb44a91 100755
--- a/bin/genparser
+++ b/bin/genparser
@@ -21,7 +21,7 @@
 #
 # There is NO dependency in either the autotools or CMake to regenerate
 # the parser code. If you modify H5LT analyze.l or H5LTparse.y, you
-# will need to run this scrpit manually on a system with a suitable
+# will need to run this script manually on a system with a suitable
 # lexer and parser generator.
 #
 # IMPORTANT OS X NOTE
diff --git a/config/toolchain/aarch64.cmake b/config/toolchain/aarch64.cmake
index aa84a74..03f4e5e 100644
--- a/config/toolchain/aarch64.cmake
+++ b/config/toolchain/aarch64.cmake
@@ -2,7 +2,7 @@ set(TOOLCHAIN_PREFIX aarch64-linux-gnu)
 set(ANDROID_NDK /opt/android-ndk-linux)
 set (CMAKE_SYSTEM_NAME Android)
 set (CMAKE_ANDROID_ARCH_ABI x86_64)
-#set (CMAKE_ANDROID_STANDALONE_TOOLCHAIN ${ANDROID_NDK}/build/cmake/andriod.toolchain.cmake)
+#set (CMAKE_ANDROID_STANDALONE_TOOLCHAIN ${ANDROID_NDK}/build/cmake/android.toolchain.cmake)
 set (CMAKE_C_COMPILER ${TOOLCHAIN_PREFIX}-gcc)
 set (CMAKE_CXX_COMPILER ${TOOLCHAIN_PREFIX}-g++)
 #set (CMAKE_RC_COMPILER ${TOOLCHAIN_PREFIX}-windres)
diff --git a/configure.ac b/configure.ac
index 68d573d..6379b41 100644
--- a/configure.ac
+++ b/configure.ac
@@ -2566,7 +2566,7 @@ AC_ARG_ENABLE([optimization],
                                details.
                                Alternatively, optimization options can
                                be specified directly by specifying them as a
-                               string value. These custom optimzation flags will
+                               string value. These custom optimization flags will
                                completely replace all other optimization flags.
                                [default depends on build mode: debug=debug,
                                 production=high, clean=none]
diff --git a/doxygen/dox/LearnBasics2.dox b/doxygen/dox/LearnBasics2.dox
index ffcb971..6f94c7f 100644
--- a/doxygen/dox/LearnBasics2.dox
+++ b/doxygen/dox/LearnBasics2.dox
@@ -906,7 +906,7 @@ can be used to obtain information about the selection.</li>
 The dataset with the region references was read by #H5Dread with the #H5T_STD_REF_DSETREG datatype specified.
 
 The read reference can be used to obtain the dataset identifier by calling #H5Rdereference or by obtaining
-obtain spacial information (dataspace and selection) with the call to #H5Rget_region.
+obtain spatial information (dataspace and selection) with the call to #H5Rget_region.
 
 The reference to the dataset region has information for both the dataset itself and its selection. In both functions:
 \li The first parameter is an identifier of the dataset with the region references.
diff --git a/doxygen/examples/FileFormat.html b/doxygen/examples/FileFormat.html
index fc35357..133bbc8 100644
--- a/doxygen/examples/FileFormat.html
+++ b/doxygen/examples/FileFormat.html
@@ -30,7 +30,7 @@ TABLE CAPTION STRONG { font-size: larger }
 <li><h3><u>Document's Audience:</u></h3>
 
 <ul>
-    <li>Current H5 library designers and knowledgable external developers.</li>
+    <li>Current H5 library designers and knowledgeable external developers.</li>
 </ul>
 
 </li><li><h3><u>Background Reading:</u></h3>
diff --git a/doxygen/examples/IOFlow.html b/doxygen/examples/IOFlow.html
index 6b2c27e..e890edb 100644
--- a/doxygen/examples/IOFlow.html
+++ b/doxygen/examples/IOFlow.html
@@ -24,7 +24,7 @@ OL.upperroman { list-style-type: upper-roman }
 <li><h3><u>Document's Audience:</u></h3>
 
 <ul>
-    <li>Current H5 library designers and knowledgable external developers.</li>
+    <li>Current H5 library designers and knowledgeable external developers.</li>
 </ul>
 
 </li><li><h3><u>Background Reading:</u></h3>
diff --git a/fortran/src/H5Pf.c b/fortran/src/H5Pf.c
index 876457f..77d5cd0 100644
--- a/fortran/src/H5Pf.c
+++ b/fortran/src/H5Pf.c
@@ -1756,7 +1756,7 @@ DONE:
  * INPUTS
  *  prp_id   - property list identifier
  * OUTPUTS
- *  nfilters - number of filters defined in the filter pipline
+ *  nfilters - number of filters defined in the filter pipeline
  * RETURNS
  *  0 on success, -1 on failure
  * AUTHOR
diff --git a/fortran/test/tH5O_F03.F90 b/fortran/test/tH5O_F03.F90
index 2f9bcad..6cae6b3 100644
--- a/fortran/test/tH5O_F03.F90
+++ b/fortran/test/tH5O_F03.F90
@@ -442,7 +442,7 @@ SUBROUTINE test_obj_visit(total_error)
   ! Construct "interesting" file to visit
   CALL build_visit_file(fid)
 
-  ! Inialize udata for testing purposes
+  ! Initialize udata for testing purposes
   udata%info(1)%path(1:1) ="."
   udata%info(1)%type_obj = H5O_TYPE_GROUP_F
   udata%info(2)%path(1:12) = &
diff --git a/src/H5FScache.c b/src/H5FScache.c
index ecbc012..c381687 100644
--- a/src/H5FScache.c
+++ b/src/H5FScache.c
@@ -436,7 +436,7 @@ H5FS__cache_hdr_pre_serialize(H5F_t *f, void *_thing, haddr_t addr, size_t H5_AT
          *
          *        H5F_addr_defined(fspace->addr)
          *
-         *    will both be TRUE.  If this contition does not hold, then
+         *    will both be TRUE.  If this condition does not hold, then
          *    either the free space info is not persistent
          *    (!H5F_addr_defined(fspace->addr)???) or the section info
          *    contains no free space data that must be written to file
diff --git a/src/H5PLpath.c b/src/H5PLpath.c
index 1f78064..a6734cb 100644
--- a/src/H5PLpath.c
+++ b/src/H5PLpath.c
@@ -817,7 +817,7 @@ done:
 /*-------------------------------------------------------------------------
  * Function:    H5PL__find_plugin_in_path
  *
- * Purpose:     Given a path, this function opens the directory and envokes
+ * Purpose:     Given a path, this function opens the directory and invokes
  *              another function to go through all files to find the right
  *              plugin library. Two function definitions are for Unix and
  *              Windows.
diff --git a/src/H5S.c b/src/H5S.c
index 6575b6f..47b3dfd 100644
--- a/src/H5S.c
+++ b/src/H5S.c
@@ -1650,7 +1650,7 @@ H5S_decode(const unsigned char **p)
 {
     H5F_t               *f = NULL;         /* Fake file structure*/
     H5S_t               *ds;               /* Decoded dataspace */
-    H5S_extent_t        *extent;           /* Entent of decoded dataspace */
+    H5S_extent_t        *extent;           /* Extent of decoded dataspace */
     const unsigned char *pp = (*p);        /* Local pointer for decoding */
     size_t               extent_size;      /* size of the extent message*/
     uint8_t              sizeof_size;      /* 'Size of sizes' for file */
diff --git a/testpar/t_bigio.c b/testpar/t_bigio.c
index 2bd4006..7e9e715 100644
--- a/testpar/t_bigio.c
+++ b/testpar/t_bigio.c
@@ -1866,7 +1866,7 @@ main(int argc, char **argv)
     /* Having set the bigio handling to a size that is manageable,
      * we'll set our 'bigcount' variable to be 2X that limit so
      * that we try to ensure that our bigio handling is actually
-     * envoked and tested.
+     * invoked and tested.
      */
     if (newsize != oldsize)
         bigcount = newsize * 2;