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authorAllen Byrne <byrn@hdfgroup.org>2012-07-19 19:53:17 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2012-07-19 19:53:17 (GMT)
commit4a6f93f895a8e60dc4f78e321db98a2fa5f1bdaf (patch)
tree58ea9d39bab95fa715ea2c13a13b8b9bacdd8800
parent75f4e51a1a076ea2f1602619e2a7d7bcce13c2f1 (diff)
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[svn-r22588] HDFFV-721: h5dump supplies input for h5import
Tested: local linux with cmake jam with configure
Diffstat
-rw-r--r--MANIFEST8
-rw-r--r--release_docs/CMake.txt106
-rw-r--r--tools/h5dump/CMakeLists.txt36
-rw-r--r--tools/h5dump/testh5dump.sh.in6
-rw-r--r--tools/h5import/CMakeLists.txt102
-rw-r--r--tools/h5import/h5import.c2010
-rw-r--r--tools/h5import/h5import.h29
-rwxr-xr-xtools/h5import/h5importtestutil.sh70
-rw-r--r--tools/h5import/testfiles/dbinfp64.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinin16.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinin32.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinin8.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinin8w.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinuin16.h5.txt2
-rw-r--r--tools/h5import/testfiles/dbinuin32.h5.txt2
-rw-r--r--tools/h5import/testfiles/dtxtstr.h5.txt2
16 files changed, 2062 insertions, 321 deletions
diff --git a/MANIFEST b/MANIFEST
index dece0ee..e106216 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -1173,6 +1173,14 @@
./tools/h5import/testfiles/txtstr.conf
./tools/h5import/testfiles/txtstr.h5
./tools/h5import/testfiles/txtstr.txt
+./tools/h5import/testfiles/dbinfp64.h5.txt
+./tools/h5import/testfiles/dbinin8.h5.txt
+./tools/h5import/testfiles/dbinin8w.h5.txt
+./tools/h5import/testfiles/dbinin16.h5.txt
+./tools/h5import/testfiles/dbinin32.h5.txt
+./tools/h5import/testfiles/dbinuin16.h5.txt
+./tools/h5import/testfiles/dbinuin32.h5.txt
+./tools/h5import/testfiles/dtxtstr.h5.txt
# h5diff sources
./tools/h5diff/Makefile.am
diff --git a/release_docs/CMake.txt b/release_docs/CMake.txt
index 2d15741..1d36e21 100644
--- a/release_docs/CMake.txt
+++ b/release_docs/CMake.txt
@@ -248,51 +248,69 @@ Notes: This short instruction is written for users who want to quickly build
========================================================================
All options for HDF5 C/C++ Libraries with CMake
+ Option Name --- Option Description --- Option Default
========================================================================
-OPTION (HDF5_Enable_Clear_File_Buffers "Securely clear file buffers before writing to file" ON)
-OPTION (HDF5_Enable_Instrument "Instrument The library" HDF5_Enable_Instrument)
-OPTION (HDF5_STRICT_FORMAT_CHECKS "Whether to perform strict file format checks" OFF)
-OPTION (HDF5_METADATA_TRACE_FILE "Enable metadata trace file collection" OFF)
-OPTION (HDF5_WANT_DATA_ACCURACY "IF data accuracy is guaranteed during data conversions" ON)
-OPTION (HDF5_WANT_DCONV_EXCEPTION "exception handling functions is checked during data conversions" ON)
-OPTION (HDF5_ENABLE_CODESTACK "Enable the function stack tracing (for developer debugging)." OFF)
-OPTION (HDF5_ENABLE_HSIZET "Enable datasets larger than memory" ON)
-OPTION (HDF5_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON)
-OPTION (HDF5_ENABLE_GPFS "Enable GPFS hints for the MPI/POSIX file driver" OFF)
-IF (APPLE) OPTION (HDF5_BUILD_WITH_INSTALL_NAME "Build with library install_name set to the installation path" OFF)
-OPTION (BUILD_SHARED_LIBS "Build Shared Libraries" OFF)
-OPTION (BUILD_STATIC_EXECS "Build Static Executabless" OFF)
-OPTION (BUILD_STATIC_PIC "Build Static PIC" OFF)
-OPTION (HDF5_ENABLE_COVERAGE "Enable code coverage for Libraries and Programs" OFF)
-OPTION (HDF5_ENABLE_USING_MEMCHECKER "Indicate that a memory checker is used" OFF)
-OPTION (HDF5_ENABLE_DEPRECATED_SYMBOLS "Enable deprecated public API symbols" ON)
-OPTION (HDF5_ENABLE_TRACE "Enable API tracing capability" ON)
-OPTION (HDF5_ENABLE_TRACE "Enable API tracing capability" OFF)
-OPTION (HDF5_ENABLE_EMBEDDED_LIBINFO "embed library info into executables" ON)
-OPTION (HDF5_DISABLE_COMPILER_WARNINGS "Disable compiler warnings" OFF)
-OPTION (HDF5_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF)
-OPTION (HDF5_USE_16_API_DEFAULT "Use the HDF5 1.6.x API by default" OFF)
-OPTION (HDF5_USE_18_API_DEFAULT "Use the HDF5 1.8.x API by default" OFF)
-OPTION (HDF5_USE_FILTER_${FILTER} "Use the ${FILTER} Filter" ON)
-OPTION (HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building" "NO")
-OPTION (ZLIB_USE_EXTERNAL "Use External Library Building for ZLIB" 0)
-OPTION (SZIP_USE_EXTERNAL "Use External Library Building for SZIP" 0)
-OPTION (HDF5_ENABLE_Z_LIB_SUPPORT "Enable Zlib Filters" OFF)
-OPTION (HDF5_ENABLE_SZIP_SUPPORT "Use SZip Filter" OFF)
-IF (HDF5_ENABLE_SZIP_SUPPORT) OPTION (HDF5_ENABLE_SZIP_ENCODING "Use SZip Encoding" OFF)
-OPTION (HDF5_PACKAGE_EXTLIBS "CPACK - include external libraries" OFF)
-IF (WIN32 AND NOT CYGWIN) OPTION (HDF5_ENABLE_THREADSAFE "Enable Threadsafety" OFF)
-OPTION (BUILD_TESTING "Build HDF5 Unit Testing" OFF)
-OPTION (HDF5_TEST_VFD "Execute tests with different VFDs" OFF)
-IF (HDF5_TEST_VFD) OPTION (HDF5_TEST_FHEAP_VFD "Execute tests with different VFDs" ON)
-OPTION (HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF)
-IF (HDF5_BUILD_FORTRAN) OPTION (HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" OFF)
-OPTION (HDF5_BUILD_EXAMPLES "Build HDF5 Library Examples" OFF)
-OPTION (HDF5_BUILD_CPP_LIB "Build HDF5 C++ Library" OFF)
-OPTION (HDF5_BUILD_TOOLS "Build HDF5 Tools" OFF)
-OPTION (HDF5_BUILD_HL_LIB "Build HIGH Level HDF5 Library" OFF)
-OPTION (HDF5_NO_PACKAGES "Do not include CPack Packaging" OFF)
-OPTION (HDF5_USE_FOLDERS "Do not include CPack Packaging" OFF)
+---------------- General Build Options ---------------------
+BUILD_SHARED_LIBS "Build Shared Libraries" OFF
+BUILD_STATIC_EXECS "Build Static Executabless" OFF
+BUILD_STATIC_PIC "Build Static PIC" OFF
+BUILD_TESTING "Build HDF5 Unit Testing" OFF
+
+---------------- HDF5 Build Options ---------------------
+HDF5_BUILD_CPP_LIB "Build HDF5 C++ Library" OFF
+HDF5_BUILD_EXAMPLES "Build HDF5 Library Examples" OFF
+HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF
+HDF5_BUILD_HL_LIB "Build HIGH Level HDF5 Library" OFF
+HDF5_BUILD_TOOLS "Build HDF5 Tools" OFF
+IF (HDF5_BUILD_FORTRAN)
+ HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" OFF
+
+---------------- HDF5 Advanced Options ---------------------
+HDF5_DISABLE_COMPILER_WARNINGS "Disable compiler warnings" OFF
+HDF5_Enable_Clear_File_Buffers "Securely clear file buffers before writing to file" ON
+HDF5_Enable_Instrument "Instrument The library" HDF5_Enable_Instrument
+HDF5_ENABLE_CODESTACK "Enable the function stack tracing (for developer debugging)." OFF
+HDF5_ENABLE_COVERAGE "Enable code coverage for Libraries and Programs" OFF
+HDF5_ENABLE_DEPRECATED_SYMBOLS "Enable deprecated public API symbols" ON
+HDF5_ENABLE_EMBEDDED_LIBINFO "embed library info into executables" ON
+HDF5_ENABLE_GPFS "Enable GPFS hints for the MPI/POSIX file driver" OFF
+HDF5_ENABLE_HSIZET "Enable datasets larger than memory" ON
+HDF5_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON
+HDF5_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF
+HDF5_ENABLE_TRACE "Enable API tracing capability" OFF
+HDF5_ENABLE_USING_MEMCHECKER "Indicate that a memory checker is used" OFF
+HDF5_METADATA_TRACE_FILE "Enable metadata trace file collection" OFF
+HDF5_NO_PACKAGES "Do not include CPack Packaging" OFF
+HDF5_PACKAGE_EXTLIBS "CPACK - include external libraries" OFF
+HDF5_STRICT_FORMAT_CHECKS "Whether to perform strict file format checks" OFF
+HDF5_TEST_VFD "Execute tests with different VFDs" OFF
+HDF5_USE_16_API_DEFAULT "Use the HDF5 1.6.x API by default" OFF
+HDF5_USE_18_API_DEFAULT "Use the HDF5 1.8.x API by default" OFF
+HDF5_USE_FOLDERS "Do not include CPack Packaging" OFF
+HDF5_WANT_DATA_ACCURACY "IF data accuracy is guaranteed during data conversions" ON
+HDF5_WANT_DCONV_EXCEPTION "exception handling functions is checked during data conversions" ON
+IF (APPLE)
+ HDF5_BUILD_WITH_INSTALL_NAME "Build with library install_name set to the installation path" OFF
+IF (CMAKE_BUILD_TYPE MATCHES Debug)
+ HDF5_ENABLE_TRACE "Enable API tracing capability" ON
+IF (HDF5_TEST_VFD)
+ HDF5_TEST_FHEAP_VFD "Execute tests with different VFDs" ON
+IF (WIN32 AND NOT CYGWIN)
+ HDF_LEGACY_NAMING "Use Legacy Names for Libraries and Programs" OFF
+HDF5_ENABLE_THREADSAFE "Enable Threadsafety" OFF
+
+---------------- External Library Options ---------------------
+HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building" "NO"
+HDF5_ENABLE_SZIP_SUPPORT "Use SZip Filter" OFF
+HDF5_ENABLE_Z_LIB_SUPPORT "Enable Zlib Filters" OFF
+ZLIB_USE_EXTERNAL "Use External Library Building for ZLIB" 0
+SZIP_USE_EXTERNAL "Use External Library Building for SZIP" 0
+HDF5_USE_FILTER_FLETCHER32 "Use the FLETCHER32 Filter" ON
+HDF5_USE_FILTER_NBIT "Use the NBIT Filter" ON
+HDF5_USE_FILTER_SCALEOFFSET "Use the SCALEOFFSET Filter" ON
+HDF5_USE_FILTER_SHUFFLE "Use the SHUFFLE Filter" ON
+IF (HDF5_ENABLE_SZIP_SUPPORT)
+ HDF5_ENABLE_SZIP_ENCODING "Use SZip Encoding" OFF
************************************************************************
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index 88d28c4..02327b4 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -1357,11 +1357,21 @@ IF (BUILD_TESTING)
# NATIVE default. the NATIVE test can be validated with h5import/h5diff
ADD_H5_TEST (tbin1 0 --enable-error-stack -d integer -o out1.bin -b tbinary.h5)
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5DUMP-tbin1 PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
+ SET (last_test "H5DUMP-tbin1")
+
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5DUMP-tbin1 PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5DUMP-tbin1")
+ ADD_TEST (NAME H5DUMP-clear-out1D COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/out1D.h5)
+ SET_TESTS_PROPERTIES (H5DUMP-clear-out1D PROPERTIES DEPENDS H5DUMP-tbin1)
+ ADD_TEST (NAME H5DUMP-h5import-out1D COMMAND h5import out1.bin -c tbin1.out -o out1D.h5)
+ SET_TESTS_PROPERTIES (H5DUMP-h5import-out1D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ SET_TESTS_PROPERTIES (H5DUMP-h5import-out1D PROPERTIES DEPENDS H5DUMP-clear-out1D)
+ ADD_TEST (NAME H5DUMP-h5diff-out1D COMMAND h5diff tbinary.h5 out1D.h5 /integer /integer)
+ SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ SET_TESTS_PROPERTIES (H5DUMP-h5diff-out1D PROPERTIES DEPENDS H5DUMP-h5import-out1D)
+ SET (last_test "H5DUMP-h5diff-out1D")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (NAME H5DUMP-clear-out1 COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/out1.h5)
@@ -1386,11 +1396,21 @@ IF (BUILD_TESTING)
# the NATIVE test can be validated with h5import/h5diff
ADD_H5_TEST (tbin3 0 --enable-error-stack -d integer -o out3.bin -b NATIVE tbinary.h5)
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5DUMP-tbin3 PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
+ SET (last_test "H5DUMP-tbin3")
+
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5DUMP-tbin3 PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5DUMP-tbin3")
+ ADD_TEST (NAME H5DUMP-clear-out3D COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/out3D.h5)
+ SET_TESTS_PROPERTIES (H5DUMP-clear-out3D PROPERTIES DEPENDS H5DUMP-tbin3)
+ ADD_TEST (NAME H5DUMP-h5import-out3D COMMAND h5import out3.bin -c tbin3.out -o out3D.h5)
+ SET_TESTS_PROPERTIES (H5DUMP-h5import-out3D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ SET_TESTS_PROPERTIES (H5DUMP-h5import-out3D PROPERTIES DEPENDS H5DUMP-clear-out3D)
+ ADD_TEST (NAME H5DUMP-h5diff-out3D COMMAND h5diff tbinary.h5 out3D.h5 /integer /integer -q)
+ SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3D PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ SET_TESTS_PROPERTIES (H5DUMP-h5diff-out3D PROPERTIES DEPENDS H5DUMP-h5import-out3D)
+ SET (last_test "H5DUMP-h5diff-out3D")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (NAME H5DUMP-clear-out3 COMMAND ${CMAKE_COMMAND} -E remove ./testfiles/out3.h5)
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index 8d2fb20..fa71558 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -953,6 +953,9 @@ TOOLTEST tbin1.ddl --enable-error-stack -d integer -o out1.bin -b LE tbinar
TOOLTEST tbin1.ddl --enable-error-stack -d integer -o out1.bin -b tbinary.h5
IMPORTTEST out1.bin -c out3.h5import -o out1.h5
DIFFTEST tbinary.h5 out1.h5 /integer /integer
+# Same but use h5dump as input to h5import
+IMPORTTEST out1.bin -c tbin1.ddl -o out1D.h5
+DIFFTEST tbinary.h5 out1D.h5 /integer /integer
TOOLTEST tbin2.ddl --enable-error-stack -b BE -d float -o out2.bin tbinary.h5
@@ -960,6 +963,9 @@ TOOLTEST tbin2.ddl --enable-error-stack -b BE -d float -o out2.bin tbina
TOOLTEST tbin3.ddl --enable-error-stack -d integer -o out3.bin -b NATIVE tbinary.h5
IMPORTTEST out3.bin -c out3.h5import -o out3.h5
DIFFTEST tbinary.h5 out3.h5 /integer /integer
+# Same but use h5dump as input to h5import
+IMPORTTEST out3.bin -c tbin3.ddl -o out3D.h5
+DIFFTEST tbinary.h5 out3D.h5 /integer /integer
TOOLTEST tbin4.ddl --enable-error-stack -d double -b FILE -o out4.bin tbinary.h5
diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt
index bbe73a8..42c5c8e 100644
--- a/tools/h5import/CMakeLists.txt
+++ b/tools/h5import/CMakeLists.txt
@@ -12,6 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib)
ADD_EXECUTABLE (h5import ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5import.c)
TARGET_NAMING (h5import ${LIB_TYPE})
TARGET_LINK_LIBRARIES (h5import ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
+#SET_TARGET_PROPERTIES (h5import PROPERTIES COMPILE_DEFINITIONS H5DEBUGIMPORT)
SET_TARGET_PROPERTIES (h5import PROPERTIES FOLDER tools)
SET (H5_DEP_EXECUTABLES h5import)
@@ -59,6 +60,14 @@ IF (BUILD_TESTING)
txtin32.txt
textpfe64.txt
txtstr.txt
+ dbinfp64.h5.txt
+ dbinin8.h5.txt
+ dbinin8w.h5.txt
+ dbinin16.h5.txt
+ dbinin32.h5.txt
+ dbinuin16.h5.txt
+ dbinuin32.h5.txt
+ dtxtstr.h5.txt
)
SET (HDF5_REFERENCE_TEST_FILES
binfp64.h5
@@ -170,7 +179,88 @@ IF (BUILD_TESTING)
SET_TESTS_PROPERTIES (H5IMPORT-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5IMPORT-H5DMP-${testname})
SET (last_test "H5IMPORT-H5DMP_CMP-${testname}")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
- ENDMACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname)
+ ENDMACRO (ADD_H5_TEST testname importfile conffile testfile)
+
+ MACRO (ADD_H5_DUMPTEST testname datasetname testfile)
+ # If using memchecker add tests without using scripts
+ IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}-clear-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove
+ d${testfile}
+ d${testfile}.bin
+ d${testfile}.imp
+ d${testfile}.imp.err
+ d${testfile}.dmp
+ d${testfile}.dmp.err
+ d${testfile}.dff
+ d${testfile}.dff.err
+ )
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
+
+ IF ("${ARGN}" STREQUAL "BINARY")
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}-H5DUMP
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
+ -D "TEST_ARGS:STRING=-p;-d;${datasetname};-o;d${testfile}.bin;-b;testfiles/${testfile}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -D "TEST_OUTPUT=d${testfile}.dmp"
+ -D "TEST_EXPECT=0"
+ -D "TEST_SKIP_COMPARE=TRUE"
+ -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+ )
+ ELSE ("${ARGN}" STREQUAL "BINARY")
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}-H5DUMP
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
+ -D "TEST_ARGS:STRING=-p;-d;${datasetname};-o;d${testfile}.bin;-y;--width=1;testfiles/${testfile}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -D "TEST_OUTPUT=d${testfile}.dmp"
+ -D "TEST_EXPECT=0"
+ -D "TEST_SKIP_COMPARE=TRUE"
+ -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+ )
+ ENDIF ("${ARGN}" STREQUAL "BINARY")
+ SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DUMP PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-clear-objects")
+
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5import>"
+ -D "TEST_ARGS:STRING=d${testfile}.bin;-c;d${testfile}.dmp;-o;d${testfile}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -D "TEST_OUTPUT=d${testfile}.imp"
+ -D "TEST_EXPECT=0"
+ -D "TEST_SKIP_COMPARE=TRUE"
+ -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+ )
+ SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname} PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}-H5DUMP")
+
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}-H5DIFF
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5diff>"
+ -D "TEST_ARGS:STRING=-v;d${testfile};testfiles/${testfile};${datasetname};${datasetname}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+ -D "TEST_OUTPUT=d${testfile}.dff"
+ -D "TEST_EXPECT=0"
+ -D "TEST_REFERENCE=d${testfile}.txt"
+ -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+ )
+ SET_TESTS_PROPERTIES (H5IMPORT-DUMP-${testname}-H5DIFF PROPERTIES DEPENDS "H5IMPORT-DUMP-${testname}")
+ SET (last_test "H5IMPORT-DUMP-${testname}-H5DIFF")
+ ELSE (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ ADD_TEST (
+ NAME H5IMPORT-DUMP-${testname}-SKIPPED
+ COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${testname} ${datasetname} ${testfile}"
+ )
+ ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ ENDMACRO (ADD_H5_DUMPTEST testname datasetname testfile)
##############################################################################
##############################################################################
@@ -223,27 +313,35 @@ IF (BUILD_TESTING)
# ----- TESTING "BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compressed "
ADD_H5_TEST (BINARY_F64 binfp64.bin testfiles/binfp64.conf binfp64.h5)
+ ADD_H5_DUMPTEST (BINARY_F64 "/fp/bin/64-bit" binfp64.h5 BINARY)
# ----- TESTING "BINARY I8 - rank 3 - Output I16LE + Chunked+Extended+Compressed "
ADD_H5_TEST (BINARY_I8 binin8.bin testfiles/binin8.conf binin8.h5)
+ ADD_H5_DUMPTEST (BINARY_I8 "/int/bin/8-bit" binin8.h5 BINARY)
# ----- TESTING "BINARY I16 - rank 3 - Output order LE + CHUNKED + extended "
ADD_H5_TEST (BINARY_I16 binin16.bin testfiles/binin16.conf binin16.h5)
+ ADD_H5_DUMPTEST (BINARY_I16 "/int/bin/16-bit" binin16.h5 BINARY)
# ----- TESTING "BINARY I32 - rank 3 - Output BE + CHUNKED "
ADD_H5_TEST (BINARY_I32 binin32.bin testfiles/binin32.conf binin32.h5)
+ ADD_H5_DUMPTEST (BINARY_I32 "/int/bin/32-bit" binin32.h5 BINARY)
# ----- TESTING "BINARY UI16 - rank 3 - Output byte BE + CHUNKED "
ADD_H5_TEST (BINARY_UI16 binuin16.bin testfiles/binuin16.conf binuin16.h5)
+ ADD_H5_DUMPTEST (BINARY_UI16 "/int/buin/16-bit" binuin16.h5 BINARY)
- # ----- TESTING "BINARY UI32 - rank 3 - Output LE + CHUNKED "
+ # ----- TESTING "BINARY UI32 - rank 3 - Output LE "
ADD_H5_TEST (BINARY_UI32 binuin32.bin testfiles/binuin32.conf binuin32.h5)
+ ADD_H5_DUMPTEST (BINARY_UI32 "/int/buin/32-bit" binuin32.h5 BINARY)
# ----- TESTING "STR"
ADD_H5_TEST (STR testfiles/txtstr.txt testfiles/txtstr.conf txtstr.h5)
+ ADD_H5_DUMPTEST (STR "/mytext/data" txtstr.h5)
# ----- TESTING "BINARY I8 CR LF EOF"
ADD_H5_TEST (BINARY_I8_EOF binin8w.bin testfiles/binin8w.conf binin8w.h5)
+ ADD_H5_DUMPTEST (BINARY_I8_EOF "/dataset0" binin8w.h5 BINARY)
# ----- TESTING "ASCII F64 - rank 1 - INPUT-CLASS TEXTFPE "
ADD_H5_TEST (ASCII_F64_R1 testfiles/textpfe64.txt testfiles/textpfe.conf textpfe.h5)
diff --git a/tools/h5import/h5import.c b/tools/h5import/h5import.c
index 56dc5ab..d6dcf1d 100644
--- a/tools/h5import/h5import.c
+++ b/tools/h5import/h5import.c
@@ -371,11 +371,19 @@ static int processDataFile(char *infile, struct Input *in, hid_t file_id)
break;
case 5: /* STR */
-
- if (processStrData(strm, in, file_id) == -1) {
- (void) HDfprintf(stderr, err11, infile);
- HDfclose(strm);
- return (-1);
+ if (in->h5dumpInput) {
+ if (processStrHDFData(strm, in, file_id) == -1) {
+ (void) HDfprintf(stderr, err11, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ }
+ else {
+ if (processStrData(strm, in, file_id) == -1) {
+ (void) HDfprintf(stderr, err11, infile);
+ HDfclose(strm);
+ return (-1);
+ }
}
break;
@@ -944,6 +952,179 @@ out:
return (-1);
}
+/*-------------------------------------------------------------------------
+ * Function: processStrData
+ *
+ * Purpose: read an ASCII file with string data and generate an HDF5 dataset
+ * with a variable length type
+ *
+ * Return: 0, ok, -1 no
+ *
+ *-------------------------------------------------------------------------
+ */
+static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
+{
+ hid_t group_id;
+ hid_t dset_id;
+ hid_t space_id;
+ hid_t mspace_id;
+ hid_t type_id;
+ hid_t handle;
+ char *str1 = NULL;
+ char *str2 = NULL;
+ char *str3 = NULL;
+ char str[1024] = "";
+ char c;
+ int results;
+ int j;
+ int nlines = 0;
+ int line;
+
+ /*-------------------------------------------------------------------------
+ * read file and generate an HDF5 dataset
+ *-------------------------------------------------------------------------
+ */
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING\n");
+#endif
+
+ if ((type_id = H5Tcopy(H5T_C_S1)) < 0)
+ goto out;
+
+ if (H5Tset_size(type_id, H5T_VARIABLE) < 0)
+ goto out;
+
+ /* disable error reporting */
+ H5E_BEGIN_TRY
+ {
+ /* create parent groups */
+ if (in->path.count > 1) {
+ j = 0;
+ handle = file_id;
+ while (j < in->path.count - 1) {
+ if ((group_id = H5Gopen2(handle, in->path.group[j], H5P_DEFAULT)) < 0) {
+ group_id = H5Gcreate2(handle, in->path.group[j++], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ for (; j < in->path.count - 1; j++)
+ group_id = H5Gcreate2(group_id, in->path.group[j], H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ handle = group_id;
+ break;
+ }
+ handle = group_id;
+ j++;
+ }
+ }
+ else {
+ handle = file_id;
+ j = 0;
+ }
+
+ /*enable error reporting */
+ }
+ H5E_END_TRY;
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING groups created\n");
+#endif
+
+ if ((space_id = H5Screate_simple(in->rank, in->sizeOfDimension, NULL)) < 0)
+ goto out;
+
+ if ((mspace_id = H5Screate(H5S_SCALAR)) < 0)
+ goto out;
+
+ if ((dset_id = H5Dcreate2(handle, in->path.group[j], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING ready to process strings\n");
+#endif
+ line = 0;
+ j = 0;
+
+ while (fgets(str,sizeof(str),strm)) {
+ str1 = str;
+ str2 = NULL;
+ str3 = NULL;
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING[%d]={%s}\n", line, str1);
+#endif
+ /* process string to remove the first and last quote char */
+ str2 = strchr(str1, '"');
+ if (str2 != NULL) {
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+#endif
+ str2++;
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+#endif
+ str3 = strrchr(str2, '"');
+ if (str3 != NULL) {
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str3), str3);
+#endif
+ *str3 = '\0';
+
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING len:%d for {%s}\n", strlen(str2), str2);
+#endif
+
+ if(strlen(str2) > 0) {
+ hid_t fspace_id;
+ hsize_t start[1];
+ hsize_t count[1] = { 1 };
+
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING[%d] store %s\n", line, str2);
+#endif
+ if ((fspace_id = H5Dget_space(dset_id)) < 0)
+ goto out;
+
+ start[0] = line++;
+
+ if (H5Sselect_hyperslab(fspace_id, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
+ goto out;
+
+ if (H5Dwrite(dset_id, type_id, mspace_id, fspace_id, H5P_DEFAULT, &str2) < 0)
+ goto out;
+
+ if (H5Sclose(fspace_id) < 0)
+ goto out;
+ }
+ }
+ }
+ str[0] = '\0';
+ j++;
+ }
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING eof reached\n");
+#endif
+
+ /* close */
+ H5Dclose(dset_id);
+ H5Sclose(space_id);
+ H5Sclose(mspace_id);
+ H5Tclose(type_id);
+
+ return (0);
+
+out:
+#ifdef H5DEBUGIMPORT
+ printf("processStrHDFData DATATYPE STRING error exit\n");
+#endif
+/* disable error reporting */
+H5E_BEGIN_TRY
+{
+ /* close */
+ H5Dclose(dset_id);
+ H5Sclose(space_id);
+ H5Sclose(mspace_id);
+ H5Tclose(type_id);
+}
+H5E_END_TRY;
+
+ return (-1);
+}
+
static int allocateIntegerStorage(struct Input *in)
{
hsize_t len = 1;
@@ -1075,6 +1256,7 @@ static int processConfigurationFile(char *infile, struct Input *in)
int kindex;
char temp[255];
int ival;
+ int scanret;
const char *err1 = "Unable to open the configuration file: %s for reading.\n";
const char *err2 = "Unknown keyword in configuration file: %s\n";
@@ -1124,285 +1306,888 @@ static int processConfigurationFile(char *infile, struct Input *in)
return (-1);
}
- while (fscanf(strm, "%s", key) == 1) {
- if ((kindex = mapKeywordToIndex(key)) == -1) {
- (void) HDfprintf(stderr, err2, infile);
- HDfclose(strm);
- return (-1);
- }
- switch (kindex) {
- case 0: /* PATH */
- if (in->configOptionVector[PATH] == 1) {
- (void) HDfprintf(stderr, err3a, infile);
- HDfclose(strm);
- return (-1);
- }
- if (fscanf(strm, "%s", temp) != 1) {
- (void) HDfprintf(stderr, "%s", err18);
- HDfclose(strm);
- return (-1);
- }
- if (parsePathInfo(&in->path, temp) == -1) {
- (void) HDfprintf(stderr, err3b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[PATH] = 1;
- break;
+ scanret = fscanf(strm, "%s", key);
+ if((scanret == 1) && !HDstrcmp("HDF5", key)) {
+#ifdef H5DEBUGIMPORT
+ int pndx;
+ printf("\nh5dump file\n");
+#endif
+ in->h5dumpInput = 1;
+ scanret = fscanf(strm, "%s", temp); /* filename */
+ scanret = fscanf(strm, "%s", temp); /* start bracket */
+ scanret = fscanf(strm, "%s", key); /* DATASET */
+ while (scanret == 1) {
+ if(!HDstrcmp("DATASET", key)) { /* PATH */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASET key\n");
+#endif
+ if (in->configOptionVector[PATH] == 1) {
+ (void) HDfprintf(stderr, err3a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASET %s found\n", temp);
+#endif
+ if (parsePathInfo(&in->path, temp) == -1) {
+ (void) HDfprintf(stderr, err3b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[PATH] = 1;
+ scanret = fscanf(strm, "%s", temp); /* start bracket */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASET %s found\n", temp);
+#endif
+ } /* if(!HDstrcmp("DATASET", key)) PATH */
+ else if(!HDstrcmp("DATATYPE", key)) { /* INPUT-CLASS */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE key\n");
+#endif
+ if (in->configOptionVector[INPUT_CLASS] == 1) {
+ (void) HDfprintf(stderr, err4a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- case 1: /* INPUT-CLASS */
- if (in->configOptionVector[INPUT_CLASS] == 1) {
- (void) HDfprintf(stderr, err4a, infile);
- HDfclose(strm);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE %s found\n", temp);
+#endif
+ if ((kindex = getInputClassType(in, temp)) == -1) {
+ (void) HDfprintf(stderr, err4b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE type %d inputClass\n", in->inputClass);
+#endif
- if (fscanf(strm, "%s", temp) != 1) {
- (void) HDfprintf(stderr, "%s", err18);
- HDfclose(strm);
- return (-1);
- }
- if (getInputClass(in, temp) == -1) {
- (void) HDfprintf(stderr, err4b, infile);
- HDfclose(strm);
- return (-1);
- }
+ in->configOptionVector[INPUT_CLASS] = 1;
+
+ /*set default value for output-class */
+ if (in->configOptionVector[OUTPUT_CLASS] == 0) {
+ if (in->inputClass == 0 || in->inputClass == 4)
+ in->outputClass = 0;
+ if (in->inputClass == 1 || in->inputClass == 2
+ || in->inputClass == 3)
+ in->outputClass = 1;
+ if (in->inputClass == 6 || in->inputClass == 7)
+ in->outputClass = 2;
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE type %d outputClass\n", in->outputClass);
+#endif
- in->configOptionVector[INPUT_CLASS] = 1;
-
- /*set default value for output-class */
- if (in->configOptionVector[OUTPUT_CLASS] == 0) {
- if (in->inputClass == 0 || in->inputClass == 4)
- in->outputClass = 0;
- if (in->inputClass == 1 || in->inputClass == 2
- || in->inputClass == 3)
- in->outputClass = 1;
- if (in->inputClass == 6 || in->inputClass == 7)
- in->outputClass = 2;
- }
- break;
+ if(in->inputClass == 5) { /* STRING */
+ int get_next_prop = 1;
+ in->outputClass = -1;
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING found\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* string properties */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+ while (get_next_prop) {
+ if(!HDstrcmp("STRSIZE", temp)) { /* STRSIZE */
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err19);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING STRSIZE %s found\n", temp);
+#endif
+ if (HDstrcmp("H5T_VARIABLE;", temp)) {
+ char *more = temp;
+ ival = strtoimax(more, &more, 10);
+ if (getInputSize(in, ival) == -1) {
+ (void) HDfprintf(stderr, err5b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING %d InputSize\n", in->inputSize);
+#endif
+ }
+ }
+ else if(!HDstrcmp("STRPAD", temp)) { /* STRPAD */
+ if (fscanf(strm, "%s", temp) != 1) { /* STRPAD type */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING STRPAD %s found\n", temp);
+#endif
+ }
+ else if(!HDstrcmp("CSET", key)) { /* CSET */
+ if (fscanf(strm, "%s", temp) != 1) { /* CSET type */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING CSET %s found\n", temp);
+#endif
- case 2: /* INPUT-SIZE */
- if (in->configOptionVector[INPUT_SIZE] == 1) {
- (void) HDfprintf(stderr, err5a, infile);
- HDfclose(strm);
- return (-1);
+ }
+ else if(!HDstrcmp("CTYPE", temp)) { /* CTYPE */
+ if (fscanf(strm, "%s", temp) != 1) { /* CTYPE type */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING CTYPE %s found\n", temp);
+#endif
+ } /* if(!HDstrcmp("CSET", key)) */
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING %s found\n", temp);
+#endif
+ if(!HDstrcmp("}", temp)) { /* end bracket */
+ get_next_prop = 0;
+ }
+ } /* while (get_next_prop) */
+ } /* if(kindex == 5) STRING */
+ } /* else if(!HDstrcmp("DATATYPE", key)) INPUT-CLASS */
+ else if(!HDstrcmp("DATASPACE", key)) { /* RANK and DIMENSIONS */
+ hsize_t temp_dims[MAX_NUM_DIMENSION];
+
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE key\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+ if(!HDstrcmp("SCALAR", temp)) { /* SCALAR */
+ in->rank = 0;
+ } /* if(!HDstrcmp("SCALAR", key)) */
+ else if(!HDstrcmp("NULL", temp)) { /* NULL */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ } /* else if(!HDstrcmp("NULL", key)) */
+ else if(!HDstrcmp("SIMPLE", temp)) { /* SIMPLE */
+ int icount = 0;
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE found\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* start paren */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if(!HDstrcmp("(", temp)) { /* start paren */
+ int get_next_dim = 1;
+ int i = 0;
+
+ if (fscanf(strm, "%s", temp) != 1) { /* Dimension with optional comma */
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ while (get_next_dim) {
+ char *more = temp;
+ temp_dims[icount] = strtoull(more, &more, 10);
+ if (fscanf(strm, "%s", temp) != 1) { /* Dimension or end paren */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if(!HDstrcmp(")", temp)) { /* end paren */
+ in->rank = ++icount;
+ in->configOptionVector[RANK] = 1;
+ get_next_dim = 0;
+ }
+ else { /* Dimension */
+ icount++;
+ if (icount > MAX_NUM_DIMENSION) {
+ (void) HDfprintf(stderr, "Invalid value for rank.\n");
+ HDfclose(strm);
+ return (-1);
+ }
+ }
+ } /* while (get_next_dim) */
+
+ if ((in->sizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) HDfprintf(stderr, "Unable to allocate dynamic memory.\n");
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %d rank\n", in->rank);
+#endif
+ for (i = 0; i < in->rank; i++) {
+ in->sizeOfDimension[i] = temp_dims[i];
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE dims:", in->rank);
+ for (pndx = 0; pndx < in->rank; pndx++) {
+ printf(" %d", in->sizeOfDimension[pndx]);
+ }
+ printf("\n");
+#endif
+ in->configOptionVector[DIM] = 1;
+ } /* if(!HDstrcmp("(", key)) start paren */
+ else {
+ (void) HDfprintf(stderr, err5b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if(!HDstrcmp("/", temp)) { /* / max dims */
+ if ((in->maxsizeOfDimension = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) HDfprintf(stderr, "Unable to allocate dynamic memory.\n");
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) { /* start paren */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if(!HDstrcmp("(", temp)) { /* start paren */
+ int get_next_dim = 1;
+ int i = 0;
+
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE process max dim values\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* max dim with optional comma */
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ while (get_next_dim) {
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE get max dim value\n");
+#endif
+ if(!HDstrcmp("H5S_UNLIMITED", temp) || !HDstrcmp("H5S_UNLIMITED,", temp)) { /* unlimited */
+ in->maxsizeOfDimension[i] = H5S_UNLIMITED;
+ in->configOptionVector[EXTEND] = 1;
+ }
+ else {
+ char *more = temp;
+ in->maxsizeOfDimension[i] = strtoull(more, &more, 10);
+ }
+ if (fscanf(strm, "%s", temp) != 1) { /* max dim or end paren */
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ if(!HDstrcmp(")", temp)) { /* end paren */
+ get_next_dim = 0;
+ }
+ else { /* comma */
+ i++;
+ if (i > MAX_NUM_DIMENSION) {
+ (void) HDfprintf(stderr, "Invalid value for rank.\n");
+ HDfclose(strm);
+ return (-1);
+ }
+ }
+ } /* while (get_next_dim) */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE maxdims:", in->rank);
+ for (pndx = 0; pndx < in->rank; pndx++) {
+ printf(" %d", in->maxsizeOfDimension[pndx]);
+ }
+ printf("\n");
+ printf("h5dump DATASPACE SIMPLE get max dim finished\n");
+#endif
+ } /* if(!HDstrcmp("(", key)) start paren */
+ else {
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ scanret = fscanf(strm, "%s", temp); /* end bracket */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATASPACE SIMPLE %s found\n", temp);
+#endif
+ } /* if(!HDstrcmp("/", key)) max dims separator */
+ } /* else if(!HDstrcmp("SIMPLE", key)) */
+ else {
+ (void) HDfprintf(stderr, err5b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ } /* else if(!HDstrcmp("DATASPACE", key)) RANK and DIMENSIONS */
+ else if(!HDstrcmp("STORAGE_LAYOUT", key)) { /* CHUNKED-DIMENSION-SIZES */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT key\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* CHUNKED */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT %s found\n", temp);
+#endif
+ if(!HDstrcmp("CHUNKED", temp)) { /* CHUNKED */
+ if ((in->sizeOfChunk = (hsize_t *) HDmalloc ((size_t) in->rank * sizeof(hsize_t))) == NULL) {
+ (void) HDfprintf(stderr, "Unable to allocate dynamic memory.\n");
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) { /* start paren */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+#endif
+ if(!HDstrcmp("(", temp)) { /* start paren */
+ int get_next_dim = 1;
+ int icount = 0;
+
+ if (fscanf(strm, "%s", temp) != 1) { /* Dimension with optional comma */
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+#endif
+ while (get_next_dim) {
+ char *more = temp;
+ in->sizeOfChunk[icount] = strtoull(more, &more, 10);
+ if (fscanf(strm, "%s", temp) != 1) { /* Dimension or end paren */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+#endif
+ if(!HDstrcmp(")", temp)) { /* end paren */
+ in->configOptionVector[RANK] = 1;
+ get_next_dim = 0;
+ }
+ else { /* Dimension */
+ icount++;
+ if (icount > MAX_NUM_DIMENSION) {
+ (void) HDfprintf(stderr, "Invalid value for rank.\n");
+ HDfclose(strm);
+ return (-1);
+ }
+ }
+ } /* while (get_next_dim) */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED dims:", in->rank);
+ for (pndx = 0; pndx < in->rank; pndx++) {
+ printf(" %d", in->sizeOfChunk[pndx]);
+ }
+ printf("\n");
+#endif
+ in->configOptionVector[DIM] = 1;
+ } /* if(!HDstrcmp("(", key)) start paren */
+ else {
+ (void) HDfprintf(stderr, err5b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) { /* SIZE */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+#endif
+ if(!HDstrcmp("SIZE", temp)) { /* SIZE */
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) HDfprintf(stderr, "%s", err19);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED SIZE %d found\n", ival);
+#endif
+ }
+ while (HDstrcmp("}", temp)) {
+ if (fscanf(strm, "%s", temp) != 1) { /* end bracket */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump STORAGE_LAYOUT CHUNKED %s found\n", temp);
+#endif
+ }
+ in->configOptionVector[CHUNK] = 1;
+ } /* if(!HDstrcmp("CHUNKED", key)) CHUNKED */
+ } /* else if(!HDstrcmp("STORAGE_LAYOUT", key)) CHUNKED-DIMENSION-SIZES */
+ else if(!HDstrcmp("FILTERS", key)) { /* FILTERS */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS key\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* start bracket */
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS %s found\n", temp);
+#endif
+ if(!HDstrcmp("COMPRESSION", temp)) { /* COMPRESSION */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION found\n");
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* DEFLATE */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* bgin bracket */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+#endif
+ if (fscanf(strm, "%s", temp) != 1) { /* LEVEL */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+#endif
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) HDfprintf(stderr, "%s", err19);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION LEVEL %d found\n", ival);
+#endif
+ in->compressionParam = ival;
+ if (fscanf(strm, "%s", temp) != 1) { /* end bracket */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS COMPRESSION %s found\n", temp);
+#endif
+ in->compressionType = 0; /* ONLY GZIP supported */
+ in->configOptionVector[COMPRESS] = 1;
+ }
+ else if(!HDstrcmp("CONTIGUOUS", temp)) { /* CONTIGUOUS */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS CONTIGUOUS found\n");
+#endif
+ in->configOptionVector[COMPRESS] = 0;
+ }
+ else if(!HDstrcmp("NONE", temp)) { /* NONE */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS NONE found\n");
+#endif
+ in->configOptionVector[COMPRESS] = 0;
+ }
+ if (fscanf(strm, "%s", temp) != 1) { /* end bracket */
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump FILTERS %s found\n", temp);
+#endif
}
- if (fscanf(strm, "%d", (&ival)) != 1) {
- (void) HDfprintf(stderr, "%s", err19);
- HDfclose(strm);
- return (-1);
+ else if(!HDstrcmp("DATA", key)) { /* FINSHED */
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATA key\n");
+#endif
+ scanret = 0;
+ break;
}
- if (getInputSize(in, ival) == -1) {
- (void) HDfprintf(stderr, err5b, infile);
+ scanret = fscanf(strm, "%s", key);
+ }
+#ifdef H5DEBUGIMPORT
+ printf("h5dump path");
+ for (pndx = 0; pndx < in->path.count; pndx++) {
+ printf(" : %s", in->path.group[pndx]);
+ }
+ printf("\n");
+ printf("h5dump inputClass=%d\n", in->inputClass);
+ printf("h5dump inputSize=%d\n", in->inputSize);
+ printf("h5dump rank=%d\n", in->rank);
+ printf("h5dump outputClass=%d\n", in->outputClass);
+ printf("h5dump outputSize=%d\n", in->outputSize);
+ printf("h5dump outputArchitecture=%d\n", in->outputArchitecture);
+ printf("h5dump outputByteOrder=%d\n", in->outputByteOrder);
+ printf("h5dump compressionType=%d\n", in->compressionType);
+ printf("h5dump compressionParam=%d\n", in->compressionParam);
+ printf("h5dump externFilename=%s\n", in->externFilename);
+ printf("h5dump configOptionVector:\n");
+ for (pndx = 0; pndx < NUM_KEYS; pndx++) {
+ printf(" %s=%d\n", keytable[pndx], in->configOptionVector[pndx]);
+ }
+#endif
+ }
+ else {
+ while (scanret == 1) {
+ if ((kindex = mapKeywordToIndex(key)) == -1) {
+ (void) HDfprintf(stderr, err2, infile);
HDfclose(strm);
return (-1);
}
- in->configOptionVector[INPUT_SIZE] = 1;
+ switch (kindex) {
+ case 0: /* PATH */
+ if (in->configOptionVector[PATH] == 1) {
+ (void) HDfprintf(stderr, err3a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (parsePathInfo(&in->path, temp) == -1) {
+ (void) HDfprintf(stderr, err3b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[PATH] = 1;
+ break;
- /*set default value for output-size */
- if (in->configOptionVector[OUTPUT_SIZE] == 0)
- in->outputSize = in->inputSize;
- break;
+ case 1: /* INPUT-CLASS */
+ if (in->configOptionVector[INPUT_CLASS] == 1) {
+ (void) HDfprintf(stderr, err4a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- case 3: /* RANK */
- if (in->configOptionVector[RANK] == 1) {
- (void) HDfprintf(stderr, err6a, infile);
- HDfclose(strm);
- return (-1);
- }
+ if (fscanf(strm, "%s", temp) != 1) {
+ (void) HDfprintf(stderr, "%s", err18);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (getInputClass(in, temp) == -1) {
+ (void) HDfprintf(stderr, err4b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getRank(in, strm) == -1) {
- (void) HDfprintf(stderr, err6b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[RANK] = 1;
- break;
+ in->configOptionVector[INPUT_CLASS] = 1;
+
+ /*set default value for output-class */
+ if (in->configOptionVector[OUTPUT_CLASS] == 0) {
+ if (in->inputClass == 0 || in->inputClass == 4)
+ in->outputClass = 0;
+ if (in->inputClass == 1 || in->inputClass == 2
+ || in->inputClass == 3)
+ in->outputClass = 1;
+ if (in->inputClass == 6 || in->inputClass == 7)
+ in->outputClass = 2;
+ }
+ break;
- case 4: /* DIMENSION-SIZES */
- if (in->configOptionVector[DIM] == 1) {
- (void) HDfprintf(stderr, err7a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 2: /* INPUT-SIZE */
+ if (in->configOptionVector[INPUT_SIZE] == 1) {
+ (void) HDfprintf(stderr, err5a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (fscanf(strm, "%d", (&ival)) != 1) {
+ (void) HDfprintf(stderr, "%s", err19);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (getInputSize(in, ival) == -1) {
+ (void) HDfprintf(stderr, err5b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[INPUT_SIZE] = 1;
- if (in->configOptionVector[RANK] == 0) {
- (void) HDfprintf(stderr, err7b, infile);
- HDfclose(strm);
- return (-1);
- }
- if (getDimensionSizes(in, strm) == -1) {
- (void) HDfprintf(stderr, err7c, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[DIM] = 1;
- break;
+ /*set default value for output-size */
+ if (in->configOptionVector[OUTPUT_SIZE] == 0)
+ in->outputSize = in->inputSize;
+ break;
- case 5: /* OUTPUT-CLASS */
- if (in->configOptionVector[OUTPUT_CLASS] == 1) {
- (void) HDfprintf(stderr, err8a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 3: /* RANK */
+ if (in->configOptionVector[RANK] == 1) {
+ (void) HDfprintf(stderr, err6a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getOutputClass(in, strm) == -1) {
- (void) HDfprintf(stderr, err8b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[OUTPUT_CLASS] = 1;
- break;
+ if (getRank(in, strm) == -1) {
+ (void) HDfprintf(stderr, err6b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[RANK] = 1;
+ break;
- case 6: /* OUTPUT-SIZE */
- if (in->configOptionVector[OUTPUT_SIZE] == 1) {
- (void) HDfprintf(stderr, err9a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 4: /* DIMENSION-SIZES */
+ if (in->configOptionVector[DIM] == 1) {
+ (void) HDfprintf(stderr, err7a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getOutputSize(in, strm) == -1) {
- (void) HDfprintf(stderr, err9b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[OUTPUT_SIZE] = 1;
- break;
+ if (in->configOptionVector[RANK] == 0) {
+ (void) HDfprintf(stderr, err7b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (getDimensionSizes(in, strm) == -1) {
+ (void) HDfprintf(stderr, err7c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[DIM] = 1;
+ break;
- case 7: /* OUTPUT-ARCHITECTURE */
- if (in->configOptionVector[OUTPUT_ARCH] == 1) {
- (void) HDfprintf(stderr, err10a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 5: /* OUTPUT-CLASS */
+ if (in->configOptionVector[OUTPUT_CLASS] == 1) {
+ (void) HDfprintf(stderr, err8a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getOutputArchitecture(in, strm) == -1) {
- (void) HDfprintf(stderr, err10b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[OUTPUT_ARCH] = 1;
- break;
+ if (getOutputClass(in, strm) == -1) {
+ (void) HDfprintf(stderr, err8b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_CLASS] = 1;
+ break;
- case 8: /* OUTPUT-BYTE-ORDER */
- if (in->configOptionVector[OUTPUT_B_ORDER] == 1) {
- (void) HDfprintf(stderr, err11a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 6: /* OUTPUT-SIZE */
+ if (in->configOptionVector[OUTPUT_SIZE] == 1) {
+ (void) HDfprintf(stderr, err9a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getOutputByteOrder(in, strm) == -1) {
- (void) HDfprintf(stderr, err11b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[OUTPUT_B_ORDER] = 1;
- break;
+ if (getOutputSize(in, strm) == -1) {
+ (void) HDfprintf(stderr, err9b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_SIZE] = 1;
+ break;
- case 9: /* CHUNKED-DIMENSION-SIZES */
- if (in->configOptionVector[CHUNK] == 1) {
- (void) HDfprintf(stderr, err12a, infile);
- HDfclose(strm);
- return (-1);
- }
- /* cant appear before dimension sizes have been provided */
- if (in->configOptionVector[DIM] == 0) {
- (void) HDfprintf(stderr, err12b, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 7: /* OUTPUT-ARCHITECTURE */
+ if (in->configOptionVector[OUTPUT_ARCH] == 1) {
+ (void) HDfprintf(stderr, err10a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getChunkedDimensionSizes(in, strm) == -1) {
- (void) HDfprintf(stderr, err12c, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[CHUNK] = 1;
- break;
+ if (getOutputArchitecture(in, strm) == -1) {
+ (void) HDfprintf(stderr, err10b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_ARCH] = 1;
+ break;
- case 10: /* COMPRESSION-TYPE */
- if (in->configOptionVector[COMPRESS] == 1) {
- (void) HDfprintf(stderr, err13a, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 8: /* OUTPUT-BYTE-ORDER */
+ if (in->configOptionVector[OUTPUT_B_ORDER] == 1) {
+ (void) HDfprintf(stderr, err11a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getCompressionType(in, strm) == -1) {
- (void) HDfprintf(stderr, err13b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[COMPRESS] = 1;
+ if (getOutputByteOrder(in, strm) == -1) {
+ (void) HDfprintf(stderr, err11b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[OUTPUT_B_ORDER] = 1;
+ break;
- if (in->configOptionVector[COMPRESS_PARAM] == 0) {
- if (in->compressionType == 0)
- in->compressionParam = 6; /* default value if compressionType is GZIP */
- }
- break;
+ case 9: /* CHUNKED-DIMENSION-SIZES */
+ if (in->configOptionVector[CHUNK] == 1) {
+ (void) HDfprintf(stderr, err12a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ /* cant appear before dimension sizes have been provided */
+ if (in->configOptionVector[DIM] == 0) {
+ (void) HDfprintf(stderr, err12b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- case 11: /* COMPRESSION-PARAM */
- if (in->configOptionVector[COMPRESS_PARAM] == 1) {
- (void) HDfprintf(stderr, err14a, infile);
- HDfclose(strm);
- return (-1);
- }
+ if (getChunkedDimensionSizes(in, strm) == -1) {
+ (void) HDfprintf(stderr, err12c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[CHUNK] = 1;
+ break;
- if (getCompressionParameter(in, strm) == -1) {
- (void) HDfprintf(stderr, err14b, infile);
- HDfclose(strm);
- return (-1);
- }
+ case 10: /* COMPRESSION-TYPE */
+ if (in->configOptionVector[COMPRESS] == 1) {
+ (void) HDfprintf(stderr, err13a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- in->configOptionVector[COMPRESS_PARAM] = 1;
+ if (getCompressionType(in, strm) == -1) {
+ (void) HDfprintf(stderr, err13b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[COMPRESS] = 1;
- if (in->configOptionVector[COMPRESS] == 0)
- in->compressionType = 0;
+ if (in->configOptionVector[COMPRESS_PARAM] == 0) {
+ if (in->compressionType == 0)
+ in->compressionParam = 6; /* default value if compressionType is GZIP */
+ }
+ break;
- break;
+ case 11: /* COMPRESSION-PARAM */
+ if (in->configOptionVector[COMPRESS_PARAM] == 1) {
+ (void) HDfprintf(stderr, err14a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- case 12: /* EXTERNAL-STORAGE */
- if (in->configOptionVector[EXTERNALSTORE] == 1) {
- (void) HDfprintf(stderr, err15a, infile);
- HDfclose(strm);
- return (-1);
- }
+ if (getCompressionParameter(in, strm) == -1) {
+ (void) HDfprintf(stderr, err14b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
- if (getExternalFilename(in, strm) == -1) {
- (void) HDfprintf(stderr, err15b, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[EXTERNALSTORE] = 1;
- break;
+ in->configOptionVector[COMPRESS_PARAM] = 1;
- case 13: /* MAXIMUM-DIMENSIONS */
- if (in->configOptionVector[EXTEND] == 1) {
- (void) HDfprintf(stderr, err16a, infile);
- HDfclose(strm);
- return (-1);
- }
- /* cant appear before dimension sizes have been provided */
- if (in->configOptionVector[DIM] == 0) {
- (void) HDfprintf(stderr, err16b, infile);
- HDfclose(strm);
- return (-1);
- }
- if (getMaximumDimensionSizes(in, strm) == -1) {
- (void) HDfprintf(stderr, err16c, infile);
- HDfclose(strm);
- return (-1);
- }
- in->configOptionVector[EXTEND] = 1;
- break;
+ if (in->configOptionVector[COMPRESS] == 0)
+ in->compressionType = 0;
- default:
- break;
+ break;
+
+ case 12: /* EXTERNAL-STORAGE */
+ if (in->configOptionVector[EXTERNALSTORE] == 1) {
+ (void) HDfprintf(stderr, err15a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+
+ if (getExternalFilename(in, strm) == -1) {
+ (void) HDfprintf(stderr, err15b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[EXTERNALSTORE] = 1;
+ break;
+
+ case 13: /* MAXIMUM-DIMENSIONS */
+ if (in->configOptionVector[EXTEND] == 1) {
+ (void) HDfprintf(stderr, err16a, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ /* cant appear before dimension sizes have been provided */
+ if (in->configOptionVector[DIM] == 0) {
+ (void) HDfprintf(stderr, err16b, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ if (getMaximumDimensionSizes(in, strm) == -1) {
+ (void) HDfprintf(stderr, err16c, infile);
+ HDfclose(strm);
+ return (-1);
+ }
+ in->configOptionVector[EXTEND] = 1;
+ break;
+
+ default:
+ break;
+ }
+ scanret = fscanf(strm, "%s", key);
}
}
+
/*
- check if keywords obtained are valid
- if yes, return 0 else error
+ check if keywords obtained are valid
+ if yes, return 0 else error
*/
if (validateConfigurationParameters(in) == -1) {
@@ -1410,7 +2195,6 @@ static int processConfigurationFile(char *infile, struct Input *in)
HDfclose(strm);
return (-1);
}
-
HDfclose(strm);
return (0);
}
@@ -1491,7 +2275,7 @@ static int mapKeywordToIndex(char *key)
static int parsePathInfo(struct path_info *path, char *temp)
{
- const char delimiter[] = "/";
+ const char delimiter[] = "/\"";
char *token;
int i = 0;
const char *err1 = "Path string larger than MAX_PATH_NAME_LENGTH.\n";
@@ -1624,6 +2408,720 @@ static int getInputClass(struct Input *in, char * temp)
return (0);
}
+static int getInputClassType(struct Input *in, char * buffer)
+{
+ int kindex = -1;
+ const char *err1 = "Invalid value for input class.\n";
+ const char *err2 = "Invalid value for output architecture.\n";
+ const char *err3 = "Invalid value for output byte-order.\n";
+
+ if (!HDstrcmp(buffer, "H5T_STD_I8BE")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I8LE")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I16BE")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I16LE")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I32BE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I32LE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I64BE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_I64LE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U8BE")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U8LE")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U16BE")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U16LE")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U32BE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U32LE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U64BE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_U64LE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_SCHAR")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_UCHAR")) {
+ in->inputSize = 8;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_SHORT")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_USHORT")) {
+ in->inputSize = 16;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_INT")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_UINT")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_LONG")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_ULONG")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_LLONG")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 4;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_ULLONG")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 7;
+ }
+ else if (!HDstrcmp(buffer, "H5T_IEEE_F32BE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("IEEE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_IEEE_F32LE")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("IEEE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_IEEE_F64BE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("IEEE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_IEEE_F64LE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("IEEE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_VAX_F32")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_VAX_F64")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_FLOAT")) {
+ in->inputSize = 32;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 3;
+ }
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_DOUBLE")) {
+ in->inputSize = 64;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 3;
+ }
+#if H5_SIZEOF_LONG_DOUBLE !=0
+ else if (!HDstrcmp(buffer, "H5T_NATIVE_LDOUBLE")) {
+ in->inputSize = H5_SIZEOF_LONG_DOUBLE;
+ in->configOptionVector[INPUT_SIZE] = 1;
+
+ if ((kindex = OutputArchStrToInt("NATIVE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ kindex = 3;
+ }
+#endif
+ else if(!HDstrcmp(buffer, "H5T_TIME: not yet implemented")) {
+ kindex = -1;
+ }
+ else if(!HDstrcmp(buffer, "H5T_STRING")) {
+ kindex = 5;
+ }
+ /* case H5T_BITFIELD: */
+ else if (!HDstrcmp(buffer, "H5T_STD_B8BE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B8LE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B16BE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B16LE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B32BE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B32LE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B64BE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("BE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ else if (!HDstrcmp(buffer, "H5T_STD_B64LE")) {
+
+ if ((kindex = OutputArchStrToInt("STD")) == -1) {
+ (void) HDfprintf(stderr, "%s", err2);
+ return (-1);
+ }
+ in->outputArchitecture = kindex;
+
+ if ((kindex = OutputByteOrderStrToInt("LE")) == -1) {
+ (void) HDfprintf(stderr, "%s", err3);
+ return (-1);
+ }
+ in->outputByteOrder = kindex;
+
+ kindex = -1;
+ }
+ /* case H5T_OPAQUE: */
+ else if(!HDstrcmp(buffer, "H5T_OPAQUE")) {
+ kindex = -1;
+ }
+ /* case H5T_COMPOUND: */
+ else if(!HDstrcmp(buffer, "H5T_COMPOUND")) {
+ kindex = -1;
+ }
+ /* case H5T_REFERENCE: */
+ else if(!HDstrcmp(buffer, "H5T_REFERENCE")) {
+ kindex = -1;
+ }
+ /* case H5T_ENUM: */
+ else if(!HDstrcmp(buffer, "H5T_ENUM")) {
+ kindex = -1;
+ }
+ /* case H5T_VLEN: */
+ else if(!HDstrcmp(buffer, "H5T_VLEN")) {
+ kindex = -1;
+ }
+ /* case H5T_ARRAY: */
+ else if(!HDstrcmp(buffer, "H5T_ARRAY")) {
+ kindex = -1;
+ }
+
+ if (kindex == -1) {
+ (void) HDfprintf(stderr, "%s", err1);
+ return (-1);
+ }
+
+ /*set default value for output-size */
+ if (in->configOptionVector[OUTPUT_SIZE] == 0)
+ in->outputSize = in->inputSize;
+#ifdef H5DEBUGIMPORT
+ printf("h5dump DATATYPE STRING %d inputSize\n", in->inputSize);
+ printf("h5dump DATATYPE STRING %d outputSize\n", in->outputSize);
+#endif
+
+ in->inputClass = kindex;
+ return (0);
+}
+
static int InputClassStrToInt(char *temp)
{
int i;
@@ -1910,6 +3408,7 @@ void setDefaultValues(struct Input *in, int count)
char temp[255];
char num[255];
+ in->h5dumpInput = 0;
in->inputClass = 3; /* FP */
in->inputSize = 32;
in->outputClass = 1; /* FP */
@@ -2348,6 +3847,9 @@ static int process(struct Options *opt)
/*create data type */
intype = createInputDataType(in);
outtype = createOutputDataType(in);
+#ifdef H5DEBUGIMPORT
+ printf("process intype %d outtype %d\n", intype, outtype);
+#endif
/* create property list */
proplist = H5Pcreate(H5P_DATASET_CREATE);
@@ -2498,7 +4000,7 @@ void help(char *name)
(void) HDfprintf(stdout,
"\t The user can specify output type and storage properties in \n");
(void) HDfprintf(stdout,
- "\t the configuration file. The user is requited to specify the \n");
+ "\t the configuration file. The user is required to specify the \n");
(void) HDfprintf(stdout,
"\t path of the dataset. If the groups in the path leading to \n");
(void) HDfprintf(stdout,
@@ -2511,7 +4013,7 @@ void help(char *name)
(void) HDfprintf(stdout,
"\t provide the class and size of output data to be written to \n");
(void) HDfprintf(stdout,
- "\t the dataset and may optionally specify the output-architecure,\n");
+ "\t the dataset and may optionally specify the output-architecture,\n");
(void) HDfprintf(stdout,
"\t and the output-byte-order. If output-architecture is not \n");
(void) HDfprintf(stdout,
@@ -2596,7 +4098,11 @@ void help(char *name)
(void) HDfprintf(stdout,
"\t The configuration file is an ASCII text file and must be \n");
(void) HDfprintf(stdout,
- "\t organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n");
+ "\t the ddl formatted file (without data values) produced by h5dump \n");
+ (void) HDfprintf(stdout,
+ "\t when used with the options '-o outfilename -b' of a single dataset (-d) \n");
+ (void) HDfprintf(stdout,
+ "\t OR organized as \"CONFIG-KEYWORD VALUE\" pairs, one pair on each \n");
(void) HDfprintf(stdout, "\t line.\n\n");
(void) HDfprintf(stdout,
"\t The configuration file may have the following keywords each \n");
@@ -2612,7 +4118,7 @@ void help(char *name)
(void) HDfprintf(stdout, "\t Optional KEYWORDS:\n");
(void) HDfprintf(stdout, "\t OUTPUT-ARCHITECTURE\n");
(void) HDfprintf(stdout, "\t OUTPUT-BYTE-ORDER\n");
- (void) HDfprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n");
+ (void) HDfprintf(stdout, "\t CHUNKED-DIMENSION-SIZES\n");
(void) HDfprintf(stdout, "\t COMPRESSION-TYPE\n");
(void) HDfprintf(stdout, "\t COMPRESSION-PARAM\n");
(void) HDfprintf(stdout, "\t EXTERNAL-STORAGE\n");
@@ -2622,7 +4128,7 @@ void help(char *name)
(void) HDfprintf(stdout, "\t Strings separated by spaces to represent\n");
(void) HDfprintf(stdout, "\t the path of the data-set. If the groups in\n");
(void) HDfprintf(stdout,
- "\t the path do no exist, they will be created. \n");
+ "\t the path do not exist, they will be created. \n");
(void) HDfprintf(stdout, "\t For example,\n");
(void) HDfprintf(stdout, "\t PATH grp1/grp2/dataset1\n");
(void) HDfprintf(stdout, "\t PATH: keyword\n");
diff --git a/tools/h5import/h5import.h b/tools/h5import/h5import.h
index dbc6844..c686624 100644
--- a/tools/h5import/h5import.h
+++ b/tools/h5import/h5import.h
@@ -44,20 +44,20 @@
#define MAX_NUM_DIMENSION 32
#define BASE_10 10
-#define CHUNK 0
-#define COMPRESS 1
-#define EXTEND 2
-#define EXTERNALSTORE 3
+#define PATH 0
+#define INPUT_CLASS 1
+#define INPUT_SIZE 2
+#define RANK 3
#define DIM 4
-#define RANK 5
-#define PATH 6
-#define INPUT_CLASS 7
-#define INPUT_SIZE 8
-#define OUTPUT_CLASS 9
-#define OUTPUT_SIZE 10
-#define OUTPUT_ARCH 11
-#define OUTPUT_B_ORDER 12
-#define COMPRESS_PARAM 13
+#define OUTPUT_CLASS 5
+#define OUTPUT_SIZE 6
+#define OUTPUT_ARCH 7
+#define OUTPUT_B_ORDER 8
+#define CHUNK 9
+#define COMPRESS 10
+#define COMPRESS_PARAM 11
+#define EXTERNALSTORE 12
+#define EXTEND 13
/* data types */
#define H5DT_INT8 signed char
@@ -80,6 +80,7 @@ struct path_info
struct Input
{
+ int h5dumpInput;
struct path_info path;
int inputClass;
int inputSize;
@@ -198,6 +199,7 @@ static int parsePathInfo(struct path_info *path, char *strm);
static int parseDimensions(struct Input *in, char *strm);
static int getInputSize(struct Input *in, int ival);
static int getInputClass(struct Input *in, char * strm);
+static int getInputClassType(struct Input *in, char * strm);
static int InputClassStrToInt(char *temp);
static int getRank(struct Input *in, FILE *strm);
static int getDimensionSizes(struct Input *in, FILE *strm);
@@ -225,6 +227,7 @@ static int readUIntegerData(FILE *strm, struct Input *in);
static int allocateUIntegerStorage(struct Input *in);
static int validateConfigurationParameters(struct Input *in);
static int processStrData(FILE *strm, struct Input *in, hid_t file_id);
+static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id);
#endif /* H5IMPORT_H__ */
diff --git a/tools/h5import/h5importtestutil.sh b/tools/h5import/h5importtestutil.sh
index 7289b2a..86db229 100755
--- a/tools/h5import/h5importtestutil.sh
+++ b/tools/h5import/h5importtestutil.sh
@@ -101,6 +101,14 @@ $SRC_H5IMPORT_TESTFILES/txtin16.txt
$SRC_H5IMPORT_TESTFILES/txtin32.txt
$SRC_H5IMPORT_TESTFILES/textpfe64.txt
$SRC_H5IMPORT_TESTFILES/txtstr.txt
+$SRC_H5IMPORT_TESTFILES/dbinfp64.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinin8.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinin8w.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinin16.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinin32.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinuin16.h5.txt
+$SRC_H5IMPORT_TESTFILES/dbinuin32.h5.txt
+$SRC_H5IMPORT_TESTFILES/dtxtstr.h5.txt
"
#
@@ -153,6 +161,47 @@ else
fi
}
+# Use h5dump output as input to h5import for binary numbers
+# Use h5diff to verify results
+TOOLTEST2()
+{
+err=0
+$RUNSERIAL ../h5dump/h5dump -p -d $1 -o d$2.bin -b tmp_testfiles/$2 > d$2.dmp
+$RUNSERIAL ./h5import d$2.bin -c d$2.dmp -o d$2 > d$2.imp
+$RUNSERIAL ../h5diff/h5diff -v d$2 tmp_testfiles/$2 $1 $1 > log2
+$CP -f $SRC_H5IMPORT_TESTFILES/d$2.txt log1
+
+cmp -s log1 log2 || err=1
+rm -f log1 log2
+if [ $err -eq 1 ]; then
+nerrors="` expr $nerrors + 1 `";
+ echo "*FAILED*"
+else
+ echo " PASSED"
+fi
+}
+
+# Same as TOOLTEST2 except for strings
+# Use h5dump output as input to h5import for strings
+# Use h5diff to verify results
+TOOLTEST3()
+{
+err=0
+$RUNSERIAL ../h5dump/h5dump -p -d $1 -o d$2.bin -y --width=1 tmp_testfiles/$2 > d$2.dmp
+$RUNSERIAL ./h5import d$2.bin -c d$2.dmp -o d$2 > d$2.imp
+$RUNSERIAL ../h5diff/h5diff -v d$2 tmp_testfiles/$2 $1 $1 > log2
+$CP -f $SRC_H5IMPORT_TESTFILES/d$2.txt log1
+
+cmp -s log1 log2 || err=1
+rm -f log1 log2
+if [ $err -eq 1 ]; then
+nerrors="` expr $nerrors + 1 `";
+ echo "*FAILED*"
+else
+ echo " PASSED"
+fi
+}
+
echo ""
echo "=============================="
echo "H5IMPORT tests started"
@@ -198,39 +247,56 @@ TOOLTEST $TESTDIR/txtfp32.txt -c $TESTDIR/txtfp32.conf -o txtfp32.h5
TESTING "ASCII F64 - rank 3 - Output BE + CHUNKED+Extended+Compressed "
TOOLTEST $TESTDIR/txtfp64.txt -c $TESTDIR/txtfp64.conf -o txtfp64.h5
+
TESTING "BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compressed "
TOOLTEST binfp64.bin -c $TESTDIR/binfp64.conf -o binfp64.h5
+TESTING "H5DUMP-BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compressed "
+TOOLTEST2 "/fp/bin/64-bit" binfp64.h5
TESTING "BINARY I8 - rank 3 - Output I16LE + Chunked+Extended+Compressed "
-TOOLTEST binin8.bin -c $TESTDIR/binin8.conf -o binin8.h5
+TOOLTEST binin8.bin -c $TESTDIR/binin8.conf -o binin8.h5
+TESTING "H5DUMP-BINARY I8 - rank 3 - Output I16LE + Chunked+Extended+Compressed "
+TOOLTEST2 "/int/bin/8-bit" binin8.h5
TESTING "BINARY I16 - rank 3 - Output order LE + CHUNKED + extended "
TOOLTEST binin16.bin -c $TESTDIR/binin16.conf -o binin16.h5
+TESTING "H5DUMP-BINARY I16 - rank 3 - Output order LE + CHUNKED + extended "
+TOOLTEST2 "/int/bin/16-bit" binin16.h5
TESTING "BINARY I32 - rank 3 - Output BE + CHUNKED "
TOOLTEST binin32.bin -c $TESTDIR/binin32.conf -o binin32.h5
+TESTING "H5DUMP-BINARY I32 - rank 3 - Output BE + CHUNKED "
+TOOLTEST2 "/int/bin/32-bit" binin32.h5
TESTING "BINARY UI16 - rank 3 - Output byte BE + CHUNKED "
TOOLTEST binuin16.bin -c $TESTDIR/binuin16.conf -o binuin16.h5
+TESTING "H5DUMP-BINARY UI16 - rank 3 - Output byte BE + CHUNKED "
+TOOLTEST2 "/int/buin/16-bit" binuin16.h5
TESTING "BINARY UI32 - rank 3 - Output LE + CHUNKED "
TOOLTEST binuin32.bin -c $TESTDIR/binuin32.conf -o binuin32.h5
+TESTING "H5DUMP-BINARY UI32 - rank 3 - Output LE + CHUNKED "
+TOOLTEST2 "/int/buin/32-bit" binuin32.h5
TESTING "STR"
TOOLTEST $TESTDIR/txtstr.txt -c $TESTDIR/txtstr.conf -o txtstr.h5
+TESTING "H5DUMP-STR"
+TOOLTEST3 "/mytext/data" txtstr.h5
TESTING "BINARY I8 CR LF EOF"
TOOLTEST binin8w.bin -c $TESTDIR/binin8w.conf -o binin8w.h5
+TESTING "H5DUMP-BINARY I8 CR LF EOF"
+TOOLTEST2 "/dataset0" binin8w.h5
TESTING "ASCII F64 - rank 1 - INPUT-CLASS TEXTFPE "
TOOLTEST $TESTDIR/textpfe64.txt -c $TESTDIR/textpfe.conf -o textpfe.h5
-rm -f txtin32.txt txtin16.txt txtin8.txt txtuin32.txt txtuin16.txt *.bin *.h5
+rm -f txtin32.txt txtin16.txt txtin8.txt txtuin32.txt txtuin16.txt *.bin *.dmp *.imp *.h5
rm -rf tmp_testfiles
else
echo "** h5import or h5importtest not available ***"
diff --git a/tools/h5import/testfiles/dbinfp64.h5.txt b/tools/h5import/testfiles/dbinfp64.h5.txt
new file mode 100644
index 0000000..fb88984
--- /dev/null
+++ b/tools/h5import/testfiles/dbinfp64.h5.txt
@@ -0,0 +1,2 @@
+dataset: </fp/bin/64-bit> and </fp/bin/64-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinin16.h5.txt b/tools/h5import/testfiles/dbinin16.h5.txt
new file mode 100644
index 0000000..b94781e
--- /dev/null
+++ b/tools/h5import/testfiles/dbinin16.h5.txt
@@ -0,0 +1,2 @@
+dataset: </int/bin/16-bit> and </int/bin/16-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinin32.h5.txt b/tools/h5import/testfiles/dbinin32.h5.txt
new file mode 100644
index 0000000..a35cd79
--- /dev/null
+++ b/tools/h5import/testfiles/dbinin32.h5.txt
@@ -0,0 +1,2 @@
+dataset: </int/bin/32-bit> and </int/bin/32-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinin8.h5.txt b/tools/h5import/testfiles/dbinin8.h5.txt
new file mode 100644
index 0000000..bbc6c67
--- /dev/null
+++ b/tools/h5import/testfiles/dbinin8.h5.txt
@@ -0,0 +1,2 @@
+dataset: </int/bin/8-bit> and </int/bin/8-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinin8w.h5.txt b/tools/h5import/testfiles/dbinin8w.h5.txt
new file mode 100644
index 0000000..28d43d2
--- /dev/null
+++ b/tools/h5import/testfiles/dbinin8w.h5.txt
@@ -0,0 +1,2 @@
+dataset: </dataset0> and </dataset0>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinuin16.h5.txt b/tools/h5import/testfiles/dbinuin16.h5.txt
new file mode 100644
index 0000000..ecad7a0
--- /dev/null
+++ b/tools/h5import/testfiles/dbinuin16.h5.txt
@@ -0,0 +1,2 @@
+dataset: </int/buin/16-bit> and </int/buin/16-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dbinuin32.h5.txt b/tools/h5import/testfiles/dbinuin32.h5.txt
new file mode 100644
index 0000000..cc1d9f3
--- /dev/null
+++ b/tools/h5import/testfiles/dbinuin32.h5.txt
@@ -0,0 +1,2 @@
+dataset: </int/buin/32-bit> and </int/buin/32-bit>
+0 differences found
diff --git a/tools/h5import/testfiles/dtxtstr.h5.txt b/tools/h5import/testfiles/dtxtstr.h5.txt
new file mode 100644
index 0000000..2170300
--- /dev/null
+++ b/tools/h5import/testfiles/dtxtstr.h5.txt
@@ -0,0 +1,2 @@
+dataset: </mytext/data> and </mytext/data>
+0 differences found
generated by cgit v0.12 at 2024-11-01 03:01:33 (GMT)