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author | Chris Hogan <chogan@hdfgroup.org> | 2019-12-02 22:58:16 (GMT) |
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committer | Chris Hogan <chogan@hdfgroup.org> | 2019-12-02 22:58:16 (GMT) |
commit | 4b2560fa81fa76a5795a394e9af3da15aa9dab18 (patch) | |
tree | 6f9092fcc1ac3b0e3a3c5a22c6335742bf127177 | |
parent | 0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f (diff) | |
parent | 3664cea5d6f87a7e8e708191f9cea36077424a80 (diff) | |
download | hdf5-4b2560fa81fa76a5795a394e9af3da15aa9dab18.zip hdf5-4b2560fa81fa76a5795a394e9af3da15aa9dab18.tar.gz hdf5-4b2560fa81fa76a5795a394e9af3da15aa9dab18.tar.bz2 |
Merge pull request #2049 in HDFFV/hdf5 from ~CHOGAN/hdf5:chogan/issue_10934 to develop
* commit '3664cea5d6f87a7e8e708191f9cea36077424a80':
Fix failing test and retain semantics for chunk cache properties in non-chunked datasets
Add two missing calls to H5I_dec_ref for new dapl_id
Community-proposed fix
-rw-r--r-- | src/H5Dint.c | 77 | ||||
-rw-r--r-- | src/H5Dpkg.h | 1 |
2 files changed, 63 insertions, 15 deletions
diff --git a/src/H5Dint.c b/src/H5Dint.c index ee90db2..0acb030 100644 --- a/src/H5Dint.c +++ b/src/H5Dint.c @@ -49,7 +49,7 @@ /********************/ /* General stuff */ -static H5D_shared_t *H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type); +static H5D_shared_t *H5D__new(hid_t dcpl_id, hid_t dapl, hbool_t creating, hbool_t vl_type); static herr_t H5D__init_type(H5F_t *file, const H5D_t *dset, hid_t type_id, const H5T_t *type); static herr_t H5D__cache_dataspace_info(const H5D_t *dset); static herr_t H5D__init_space(H5F_t *file, const H5D_t *dset, const H5S_t *space); @@ -465,7 +465,7 @@ done: *------------------------------------------------------------------------- */ static H5D_shared_t * -H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type) +H5D__new(hid_t dcpl_id, hid_t dapl_id, hbool_t creating, hbool_t vl_type) { H5D_shared_t *new_dset = NULL; /* New dataset object */ H5P_genplist_t *plist; /* Property list created */ @@ -496,6 +496,19 @@ H5D__new(hid_t dcpl_id, hbool_t creating, hbool_t vl_type) new_dset->dcpl_id = H5P_copy_plist(plist, FALSE); } /* end else */ + if(!vl_type && creating && dapl_id == H5P_DATASET_ACCESS_DEFAULT) { + if(H5I_inc_ref(dapl_id, FALSE) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTINC, NULL, "can't increment default DAPL ID") + new_dset->dapl_id = dapl_id; + } /* end if */ + else { + /* Get the property list */ + if(NULL == (plist = (H5P_genplist_t *)H5I_object(dapl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a property list") + + new_dset->dapl_id = H5P_copy_plist(plist, FALSE); + } /* end else */ + /* Set return value */ ret_value = new_dset; @@ -504,6 +517,8 @@ done: if(new_dset != NULL) { if(new_dset->dcpl_id != 0 && H5I_dec_ref(new_dset->dcpl_id) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "can't decrement temporary datatype ID") + if(new_dset->dapl_id != 0 && H5I_dec_ref(new_dset->dapl_id) < 0) + HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "can't decrement temporary datatype ID") new_dset = H5FL_FREE(H5D_shared_t, new_dset); } /* end if */ @@ -1225,9 +1240,8 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, H5G_loc_reset(&dset_loc); /* Initialize the shared dataset space */ - if(NULL == (new_dset->shared = H5D__new(dcpl_id, TRUE, has_vl_type))) + if(NULL == (new_dset->shared = H5D__new(dcpl_id, dapl_id, TRUE, has_vl_type))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") - /* Copy & initialize datatype for dataset */ if(H5D__init_type(file, new_dset, type_id, type) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "can't copy datatype") @@ -1320,14 +1334,14 @@ H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space, hid_t dcpl_id, HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to construct layout information") /* Update the dataset's object header info. */ - if(H5D__update_oh_info(file, new_dset, dapl_id) < 0) + if(H5D__update_oh_info(file, new_dset, new_dset->shared->dapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "can't update the metadata cache") /* Indicate that the layout information was initialized */ layout_init = TRUE; /* Set up append flush parameters for the dataset */ - if(H5D__append_flush_setup(new_dset, dapl_id) < 0) + if(H5D__append_flush_setup(new_dset, new_dset->shared->dapl_id) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to set up flush append property") /* Set the external file prefix */ @@ -1382,6 +1396,8 @@ done: } /* end if */ if(new_dset->shared->dcpl_id != 0 && H5I_dec_ref(new_dset->shared->dcpl_id) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "unable to decrement ref count on property list") + if(new_dset->shared->dapl_id != 0 && H5I_dec_ref(new_dset->shared->dapl_id) < 0) + HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, NULL, "unable to decrement ref count on property list") new_dset->shared->extfile_prefix = (char *)H5MM_xfree(new_dset->shared->extfile_prefix); new_dset->shared->vds_prefix = (char *)H5MM_xfree(new_dset->shared->vds_prefix); new_dset->shared = H5FL_FREE(H5D_shared_t, new_dset->shared); @@ -1686,7 +1702,7 @@ H5D__open_oid(H5D_t *dataset, hid_t dapl_id) HDassert(dataset); /* (Set the 'vl_type' parameter to FALSE since it doesn't matter from here) */ - if(NULL == (dataset->shared = H5D__new(H5P_DATASET_CREATE_DEFAULT, FALSE, FALSE))) + if(NULL == (dataset->shared = H5D__new(H5P_DATASET_CREATE_DEFAULT, dapl_id, FALSE, FALSE))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") /* Open the dataset object */ @@ -1968,12 +1984,13 @@ H5D_close(H5D_t *dataset) if(H5AC_cork(dataset->oloc.file, dataset->oloc.addr, H5AC__UNCORK, NULL) < 0) HDONE_ERROR(H5E_DATASET, H5E_CANTUNCORK, FAIL, "unable to uncork an object") - /* Release datatype, dataspace and creation property list -- there isn't + /* Release datatype, dataspace and creation and access property lists -- there isn't * much we can do if one of these fails, so we just continue. */ free_failed |= (H5I_dec_ref(dataset->shared->type_id) < 0) || (H5S_close(dataset->shared->space) < 0) || - (H5I_dec_ref(dataset->shared->dcpl_id) < 0); + (H5I_dec_ref(dataset->shared->dcpl_id) < 0) || + (H5I_dec_ref(dataset->shared->dapl_id) < 0); /* Remove the dataset from the list of opened objects in the file */ if(H5FO_top_decr(dataset->oloc.file, dataset->oloc.addr) < 0) @@ -3428,22 +3445,26 @@ done: hid_t H5D_get_access_plist(const H5D_t *dset) { - H5P_genplist_t *old_plist; /* Default DAPL */ + H5P_genplist_t *old_plist; /* Stored DAPL from dset */ H5P_genplist_t *new_plist; /* New DAPL */ + H5P_genplist_t *def_fapl; /* Default FAPL */ + H5D_append_flush_t def_append_flush_info = {0}; /* Default append flush property */ + H5D_rdcc_t def_chunk_info; /* Default chunk cache property */ hid_t new_dapl_id = FAIL; hid_t ret_value = FAIL; FUNC_ENTER_NOAPI_NOINIT - /* Make a copy of the default dataset access property list */ - if(NULL == (old_plist = (H5P_genplist_t *)H5I_object(H5P_LST_DATASET_ACCESS_ID_g))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") + /* Make a copy of the dataset's dataset access property list */ + if(NULL == (old_plist = (H5P_genplist_t *)H5I_object(dset->shared->dapl_id))) + HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "can't get property list") if((new_dapl_id = H5P_copy_plist(old_plist, TRUE)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "can't copy dataset access property list") if(NULL == (new_plist = (H5P_genplist_t *)H5I_object(new_dapl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") - /* If the dataset is chunked then copy the rdcc & append flush parameters */ + /* If the dataset is chunked then copy the rdcc & append flush parameters. + * Otherwise, use the default values. */ if(dset->shared->layout.type == H5D_CHUNKED) { if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &(dset->shared->cache.chunk.nslots)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set data cache number of slots") @@ -3453,7 +3474,33 @@ H5D_get_access_plist(const H5D_t *dset) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set preempt read chunks") if(H5P_set(new_plist, H5D_ACS_APPEND_FLUSH_NAME, &dset->shared->append_flush) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set append flush property") - } /* end if */ + } else { + /* Get the default FAPL */ + if(NULL == (def_fapl = (H5P_genplist_t *)H5I_object(H5P_LST_FILE_ACCESS_ID_g))) + HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a property list") + + /* Set the data cache number of slots to the value of the default FAPL */ + if (H5P_get(def_fapl, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &def_chunk_info.nslots) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get data number of slots"); + if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_NUM_SLOTS_NAME, &def_chunk_info.nslots) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set data cache number of slots") + + /* Set the data cache byte size to the value of the default FAPL */ + if (H5P_get(def_fapl, H5D_ACS_DATA_CACHE_BYTE_SIZE_NAME, &def_chunk_info.nbytes_max) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get data cache byte size"); + if(H5P_set(new_plist, H5D_ACS_DATA_CACHE_BYTE_SIZE_NAME, &def_chunk_info.nbytes_max) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set data cache byte size") + + /* Set the preempt read chunks property to the value of the default FAPL */ + if (H5P_get(def_fapl, H5D_ACS_PREEMPT_READ_CHUNKS_NAME, &def_chunk_info.w0) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET,FAIL, "can't get preempt read chunks"); + if(H5P_set(new_plist, H5D_ACS_PREEMPT_READ_CHUNKS_NAME, &def_chunk_info.w0) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set preempt read chunks") + + /* Set the append flush property to its default value */ + if(H5P_set(new_plist, H5D_ACS_APPEND_FLUSH_NAME, &def_append_flush_info) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set append flush property") + }/* end if-else */ /* Set the VDS view & printf gap options */ if(H5P_set(new_plist, H5D_ACS_VDS_VIEW_NAME, &(dset->shared->layout.storage.u.virt.view)) < 0) diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index 723acf9..ff43880 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -443,6 +443,7 @@ struct H5D_shared_t { H5T_t *type; /* Datatype for this dataset */ H5S_t *space; /* Dataspace of this dataset */ hid_t dcpl_id; /* Dataset creation property id */ + hid_t dapl_id; /* Dataset access property id */ H5D_dcpl_cache_t dcpl_cache; /* Cached DCPL values */ H5O_layout_t layout; /* Data layout */ hbool_t checked_filters;/* TRUE if dataset passes can_apply check */ |