[svn-r11383] Snapshot version 1.6 release 5 (snap0)

11 files changed, 72 insertions, 36 deletions

diff --git a/README.txt b/README.txt
index f0615de..6befdbd 100644
--- a/README.txt
+++ b/README.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.6.5-snap0 currently under development
+HDF5 version 1.6.5-snap1 currently under development
 Please refer to the release_docs/INSTALL file for installation instructions.
 ------------------------------------------------------------------------------
 
diff --git a/c++/configure b/c++/configure
index 92ac6ee..16f86a8 100755
--- a/c++/configure
+++ b/c++/configure
@@ -1,7 +1,7 @@
 #! /bin/sh
 # From c++/configure.in Id: configure.in.
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for HDF5 C++ 1.6.5-snap0.
+# Generated by GNU Autoconf 2.59 for HDF5 C++ 1.6.5-snap1.
 #
 # Report bugs to <hdfhelp@ncsa.uiuc.edu>.
 #
@@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh}
 # Identity of this package.
 PACKAGE_NAME='HDF5 C++'
 PACKAGE_TARNAME='hdf5-c--'
-PACKAGE_VERSION='1.6.5-snap0'
-PACKAGE_STRING='HDF5 C++ 1.6.5-snap0'
+PACKAGE_VERSION='1.6.5-snap1'
+PACKAGE_STRING='HDF5 C++ 1.6.5-snap1'
 PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu'
 
 ac_unique_file="src/H5Library.cpp"
@@ -952,7 +952,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures HDF5 C++ 1.6.5-snap0 to adapt to many kinds of systems.
+\`configure' configures HDF5 C++ 1.6.5-snap1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1013,7 +1013,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of HDF5 C++ 1.6.5-snap0:";;
+     short | recursive ) echo "Configuration of HDF5 C++ 1.6.5-snap1:";;
    esac
   cat <<\_ACEOF
 
@@ -1152,7 +1152,7 @@ fi
 test -n "$ac_init_help" && exit 0
 if $ac_init_version; then
   cat <<\_ACEOF
-HDF5 C++ configure 1.6.5-snap0
+HDF5 C++ configure 1.6.5-snap1
 generated by GNU Autoconf 2.59
 
 Copyright (C) 2003 Free Software Foundation, Inc.
@@ -1166,7 +1166,7 @@ cat >&5 <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by HDF5 C++ $as_me 1.6.5-snap0, which was
+It was created by HDF5 C++ $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   $ $0 $@
@@ -10986,7 +10986,7 @@ _ASBOX
 } >&5
 cat >&5 <<_CSEOF
 
-This file was extended by HDF5 C++ $as_me 1.6.5-snap0, which was
+This file was extended by HDF5 C++ $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -11041,7 +11041,7 @@ _ACEOF
 
 cat >>$CONFIG_STATUS <<_ACEOF
 ac_cs_version="\\
-HDF5 C++ config.status 1.6.5-snap0
+HDF5 C++ config.status 1.6.5-snap1
 configured by $0, generated by GNU Autoconf 2.59,
   with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
 
diff --git a/c++/configure.in b/c++/configure.in
index 5ecce3f..ca06636 100644
--- a/c++/configure.in
+++ b/c++/configure.in
@@ -27,7 +27,7 @@ dnl
 dnl NOTE: Don't forget to change the version number here when we do a
 dnl release!!!
 dnl
-AC_INIT([HDF5 C++], [1.6.5-snap0], [hdfhelp@ncsa.uiuc.edu])
+AC_INIT([HDF5 C++], [1.6.5-snap1], [hdfhelp@ncsa.uiuc.edu])
 AC_CONFIG_SRCDIR([src/H5Library.cpp])
 AC_CONFIG_AUX_DIR([../bin])
 
diff --git a/configure b/configure
index 1e7b2d2..9ec32b5 100755
--- a/configure
+++ b/configure
@@ -1,7 +1,7 @@
 #! /bin/sh
 # From configure.in Id: configure.in.
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for HDF5 1.6.5-snap0.
+# Generated by GNU Autoconf 2.59 for HDF5 1.6.5-snap1.
 #
 # Report bugs to <hdfhelp@ncsa.uiuc.edu>.
 #
@@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh}
 # Identity of this package.
 PACKAGE_NAME='HDF5'
 PACKAGE_TARNAME='hdf5'
-PACKAGE_VERSION='1.6.5-snap0'
-PACKAGE_STRING='HDF5 1.6.5-snap0'
+PACKAGE_VERSION='1.6.5-snap1'
+PACKAGE_STRING='HDF5 1.6.5-snap1'
 PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu'
 
 ac_unique_file="src/H5.c"
@@ -942,7 +942,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures HDF5 1.6.5-snap0 to adapt to many kinds of systems.
+\`configure' configures HDF5 1.6.5-snap1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1003,7 +1003,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of HDF5 1.6.5-snap0:";;
+     short | recursive ) echo "Configuration of HDF5 1.6.5-snap1:";;
    esac
   cat <<\_ACEOF
 
@@ -1181,7 +1181,7 @@ fi
 test -n "$ac_init_help" && exit 0
 if $ac_init_version; then
   cat <<\_ACEOF
-HDF5 configure 1.6.5-snap0
+HDF5 configure 1.6.5-snap1
 generated by GNU Autoconf 2.59
 
 Copyright (C) 2003 Free Software Foundation, Inc.
@@ -1195,7 +1195,7 @@ cat >&5 <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by HDF5 $as_me 1.6.5-snap0, which was
+It was created by HDF5 $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   $ $0 $@
@@ -36430,6 +36430,29 @@ echo "${ECHO_T}yes" >&6
 echo "${ECHO_T}no" >&6
   fi
 
+
+echo "$as_me:$LINENO: checking if irregular hyperslab optimization code works inside MPI-IO" >&5
+echo $ECHO_N "checking if irregular hyperslab optimization code works inside MPI-IO... $ECHO_C" >&6
+
+if test "${hdf5_mpi_complex_derived_datatype_works+set}" = set; then
+  echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+  hdf5_mpi_complex_derived_datatype_works=yes
+fi
+
+
+if test ${hdf5_mpi_complex_derived_datatype_works} = "yes"; then
+
+cat >>confdefs.h <<\_ACEOF
+#define MPI_COMPLEX_DERIVED_DATATYPE_WORKS 1
+_ACEOF
+
+  echo "$as_me:$LINENO: result: yes" >&5
+echo "${ECHO_T}yes" >&6
+else
+  echo "$as_me:$LINENO: result: no" >&5
+echo "${ECHO_T}no" >&6
+fi
 fi
 
 
@@ -37040,7 +37063,7 @@ _ASBOX
 } >&5
 cat >&5 <<_CSEOF
 
-This file was extended by HDF5 $as_me 1.6.5-snap0, which was
+This file was extended by HDF5 $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -37103,7 +37126,7 @@ _ACEOF
 
 cat >>$CONFIG_STATUS <<_ACEOF
 ac_cs_version="\\
-HDF5 config.status 1.6.5-snap0
+HDF5 config.status 1.6.5-snap1
 configured by $0, generated by GNU Autoconf 2.59,
   with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
 
diff --git a/configure.in b/configure.in
index 20651b8..8e7e09f 100644
--- a/configure.in
+++ b/configure.in
@@ -24,7 +24,7 @@ dnl
 dnl NOTE: Don't forget to change the version number here when we do a
 dnl release!!!
 dnl
-AC_INIT([HDF5], [1.6.5-snap0], [hdfhelp@ncsa.uiuc.edu])
+AC_INIT([HDF5], [1.6.5-snap1], [hdfhelp@ncsa.uiuc.edu])
 AC_CONFIG_SRCDIR([src/H5.c])
 AC_CONFIG_HEADER([src/H5config.h])
 
diff --git a/doc/html/ADGuide/RELEASE.txt b/doc/html/ADGuide/RELEASE.txt
index a137bdd..6869711 100644
--- a/doc/html/ADGuide/RELEASE.txt
+++ b/doc/html/ADGuide/RELEASE.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.6.4-post9 released on Sun Sep  4 17:28:54 CDT 2005
+HDF5 version 1.6.5-snap0 released on Sun Sep 11 17:36:51 CDT 2005
 ================================================================================
 
 INTRODUCTION
@@ -37,7 +37,9 @@ New Features
 ============
     Source code distribution:
     -------------------------
-
+       - Added MD5 checksumming to snapshot releases.  Releases will now
+         produce a .md5 file as well as a .tar archive.  md5sum can be
+         used to verify the arvhice with the .md5 checksum.  -JL 2005/09/06
 
     Library:
     --------
@@ -353,6 +355,12 @@ Footnotes:  (1) Using mpich 1.2.6
 
 Known Problems
 ==============
+* Contiguous or chunked dataset created by a sequential version may
+  not be modified with a parallel version of the library. 
+  Use the H5Pset_alloc_time function with H5D_ALLOC_TIME_EARLY to set up the 
+  dataset creation property list to avoid the porblem.
+                                    EIP - 2005/09/09
+
 * The dataset created or rewritten with the v1.6.3 library or after can't 
   be read with the v1.6.2 library or before when Fletcher32 EDC(filter) is 
   enabled.  There was a bug in the calculating code of the Fletcher32 
@@ -362,6 +370,7 @@ Known Problems
   longer the same as before on little-endian system.  The library release 
   after 1.6.4 can still read the dataset created or rewritten with the library
   of v1.6.2 or before.  SLU - 2005/7/8
+
 * For the version 6(6.02 and 6.04) of Portland Group compiler on AMD Opteron
   processor, there's a bug in the compiler for optimization(-O2).  The library
   failed in several tests but all related to multi driver.  The problem has 
diff --git a/fortran/configure b/fortran/configure
index 677af08..99c8858 100755
--- a/fortran/configure
+++ b/fortran/configure
@@ -1,7 +1,7 @@
 #! /bin/sh
 # From fortran/configure.in Id: configure.in.
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.59 for HDF5 Fortran 1.6.5-snap0.
+# Generated by GNU Autoconf 2.59 for HDF5 Fortran 1.6.5-snap1.
 #
 # Report bugs to <hdfhelp@ncsa.uiuc.edu>.
 #
@@ -429,8 +429,8 @@ SHELL=${CONFIG_SHELL-/bin/sh}
 # Identity of this package.
 PACKAGE_NAME='HDF5 Fortran'
 PACKAGE_TARNAME='hdf5-fortran'
-PACKAGE_VERSION='1.6.5-snap0'
-PACKAGE_STRING='HDF5 Fortran 1.6.5-snap0'
+PACKAGE_VERSION='1.6.5-snap1'
+PACKAGE_STRING='HDF5 Fortran 1.6.5-snap1'
 PACKAGE_BUGREPORT='hdfhelp@ncsa.uiuc.edu'
 
 ac_unique_file="src/HDF5.f90"
@@ -940,7 +940,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures HDF5 Fortran 1.6.5-snap0 to adapt to many kinds of systems.
+\`configure' configures HDF5 Fortran 1.6.5-snap1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1001,7 +1001,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of HDF5 Fortran 1.6.5-snap0:";;
+     short | recursive ) echo "Configuration of HDF5 Fortran 1.6.5-snap1:";;
    esac
   cat <<\_ACEOF
 
@@ -1144,7 +1144,7 @@ fi
 test -n "$ac_init_help" && exit 0
 if $ac_init_version; then
   cat <<\_ACEOF
-HDF5 Fortran configure 1.6.5-snap0
+HDF5 Fortran configure 1.6.5-snap1
 generated by GNU Autoconf 2.59
 
 Copyright (C) 2003 Free Software Foundation, Inc.
@@ -1158,7 +1158,7 @@ cat >&5 <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by HDF5 Fortran $as_me 1.6.5-snap0, which was
+It was created by HDF5 Fortran $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   $ $0 $@
@@ -12184,7 +12184,7 @@ _ASBOX
 } >&5
 cat >&5 <<_CSEOF
 
-This file was extended by HDF5 Fortran $as_me 1.6.5-snap0, which was
+This file was extended by HDF5 Fortran $as_me 1.6.5-snap1, which was
 generated by GNU Autoconf 2.59.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -12247,7 +12247,7 @@ _ACEOF
 
 cat >>$CONFIG_STATUS <<_ACEOF
 ac_cs_version="\\
-HDF5 Fortran config.status 1.6.5-snap0
+HDF5 Fortran config.status 1.6.5-snap1
 configured by $0, generated by GNU Autoconf 2.59,
   with options \\"`echo "$ac_configure_args" | sed 's/[\\""\`\$]/\\\\&/g'`\\"
 
diff --git a/fortran/configure.in b/fortran/configure.in
index 5a10c80..8d9c001 100644
--- a/fortran/configure.in
+++ b/fortran/configure.in
@@ -24,7 +24,7 @@ dnl
 dnl NOTE: Don't forget to change the version number here when we do a
 dnl release!!!
 dnl
-AC_INIT([HDF5 Fortran], [1.6.5-snap0], [hdfhelp@ncsa.uiuc.edu])
+AC_INIT([HDF5 Fortran], [1.6.5-snap1], [hdfhelp@ncsa.uiuc.edu])
 AC_CONFIG_SRCDIR([src/HDF5.f90])
 AC_CONFIG_HEADER([src/H5config_fortran.h])
 
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index 9e91d35..6b9c64e 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.6.5-snap0 currently under development
+HDF5 version 1.6.5-snap1 currently under development
 ================================================================================
 
 INTRODUCTION
diff --git a/src/H5config.h.in b/src/H5config.h.in
index 53a9453..7f5b745 100644
--- a/src/H5config.h.in
+++ b/src/H5config.h.in
@@ -363,6 +363,10 @@
 /* Define if `__tm_gmtoff' is a member of `struct tm' */
 #undef HAVE___TM_GMTOFF
 
+/* Define if your system can handle complicated MPI derived datatype
+   correctly. */
+#undef MPI_COMPLEX_DERIVED_DATATYPE_WORKS
+
 /* Define if your system's `MPI_File_set_size' function works for files over
    2GB. */
 #undef MPI_FILE_SET_SIZE_BIG
diff --git a/src/H5public.h b/src/H5public.h
index a74855a..372e3f4 100644
--- a/src/H5public.h
+++ b/src/H5public.h
@@ -75,9 +75,9 @@ extern "C" {
 #define H5_VERS_MAJOR	1	/* For major interface/format changes  	     */
 #define H5_VERS_MINOR	6	/* For minor interface/format changes  	     */
 #define H5_VERS_RELEASE	5	/* For tweaks, bug-fixes, or development     */
-#define H5_VERS_SUBRELEASE "snap0"	/* For pre-releases like snap0       */
+#define H5_VERS_SUBRELEASE "snap1"	/* For pre-releases like snap0       */
 				/* Empty string for real releases.           */
-#define H5_VERS_INFO    "HDF5 library version: 1.6.5-snap0"      /* Full version string */
+#define H5_VERS_INFO    "HDF5 library version: 1.6.5-snap1"      /* Full version string */
 
 #define H5check()	H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR,	      \
 				        H5_VERS_RELEASE)