[svn-r1340] Changes since 19990611

----------------------

./doc/html/H5.format.html
	Added documentation for opaque data types (bitfield types were
	already documented but they were out of order).

./src/H5E.c
	Fixed a bug with glibc2 on linux systems where `stdout' is an
	extern and can't be used to initialize static data.

./src/H5T.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5detect.c
	Removed the `_T' from the new C9x types I just added so the
	names are consistent with existing types. Besides, the fact
	that something is a datatype is obvious because it starts with
	H5T_NATIVE_.

./tools/h5ls.c
	Added the new C9x data types. H5ls prints one of these types
	only if it doesn't match one of the builtin C types.

	Prints the OID for shared data types.

	Fixed a formatting bug with symbolic links which was
	introduced a few changes ago.

	The commandline has been changed so that objects from multiple
	files can be listed with a single command. Instead of
	specifying a file name and an optional list of objects, each
	thing to print is a file name and object concatenated. H5ls
	figures out how to devide the name into a file name and object
	name even when the file name part doesn't correspond to an
	actual Unix file.

	   Old syntax: h5ls [OPTIONS] FILE [OBJECTS]
	   New syntax: h5ls [OPTIONS] FILE[/OBJECT] [FILE[/OBJECT]]...

	   Example ({X,Y} is expanded by the shell)

	   Old command: h5ls -d ../test/x.data dir1 dir2
	   New command: h5ls -d ../test/x.data/{dir1,dir2}

	The filename is printed as part of the object name when full
	names are requested (--full or --recursive). If people really
	don't like this they can undefine a constant at the top of
	h5ls.

	Errors from the hdf5 library are turned off.

	Commandline switches of the form `--width 80' are accepted in
	addition to `--width=80'. This is more symmetric with
	single-letter switches that take two forms: `-w 80' and
	`-w80'.

./src/H5D.c
	Added tracing instrumentation for H5Dvlen_reclaim().

./src/H5private.h
	Added casts to int for the isalpha() et al macros to shut up
	solaris warnings about char subscripts.

1 files changed, 103 insertions, 99 deletions

diff --git a/src/H5T.c b/src/H5T.c
index 696f4ff..0f0465a 100644
--- a/src/H5T.c
+++ b/src/H5T.c
@@ -97,30 +97,34 @@ hid_t H5T_NATIVE_HSIZE_g		= FAIL;
 hid_t H5T_NATIVE_HSSIZE_g		= FAIL;
 hid_t H5T_NATIVE_HERR_g			= FAIL;
 hid_t H5T_NATIVE_HBOOL_g		= FAIL;
-hid_t H5T_NATIVE_INT8_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT8_T_g		= FAIL;
-hid_t H5T_NATIVE_INT_LEAST8_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT_LEAST8_T_g	= FAIL;
-hid_t H5T_NATIVE_INT_FAST8_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT_FAST8_T_g		= FAIL;
-hid_t H5T_NATIVE_INT16_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT16_T_g		= FAIL;
-hid_t H5T_NATIVE_INT_LEAST16_T_g	= FAIL;
-hid_t H5T_NATIVE_UINT_LEAST16_T_g	= FAIL;
-hid_t H5T_NATIVE_INT_FAST16_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT_FAST16_T_g	= FAIL;
-hid_t H5T_NATIVE_INT32_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT32_T_g		= FAIL;
-hid_t H5T_NATIVE_INT_LEAST32_T_g	= FAIL;
-hid_t H5T_NATIVE_UINT_LEAST32_T_g	= FAIL;
-hid_t H5T_NATIVE_INT_FAST32_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT_FAST32_T_g	= FAIL;
-hid_t H5T_NATIVE_INT64_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT64_T_g		= FAIL;
-hid_t H5T_NATIVE_INT_LEAST64_T_g	= FAIL;
-hid_t H5T_NATIVE_UINT_LEAST64_T_g	= FAIL;
-hid_t H5T_NATIVE_INT_FAST64_T_g		= FAIL;
-hid_t H5T_NATIVE_UINT_FAST64_T_g	= FAIL;
+
+hid_t H5T_NATIVE_INT8_g			= FAIL;
+hid_t H5T_NATIVE_UINT8_g		= FAIL;
+hid_t H5T_NATIVE_INT_LEAST8_g		= FAIL;
+hid_t H5T_NATIVE_UINT_LEAST8_g		= FAIL;
+hid_t H5T_NATIVE_INT_FAST8_g		= FAIL;
+hid_t H5T_NATIVE_UINT_FAST8_g		= FAIL;
+
+hid_t H5T_NATIVE_INT16_g		= FAIL;
+hid_t H5T_NATIVE_UINT16_g		= FAIL;
+hid_t H5T_NATIVE_INT_LEAST16_g		= FAIL;
+hid_t H5T_NATIVE_UINT_LEAST16_g		= FAIL;
+hid_t H5T_NATIVE_INT_FAST16_g		= FAIL;
+hid_t H5T_NATIVE_UINT_FAST16_g		= FAIL;
+
+hid_t H5T_NATIVE_INT32_g		= FAIL;
+hid_t H5T_NATIVE_UINT32_g		= FAIL;
+hid_t H5T_NATIVE_INT_LEAST32_g		= FAIL;
+hid_t H5T_NATIVE_UINT_LEAST32_g		= FAIL;
+hid_t H5T_NATIVE_INT_FAST32_g		= FAIL;
+hid_t H5T_NATIVE_UINT_FAST32_g		= FAIL;
+
+hid_t H5T_NATIVE_INT64_g		= FAIL;
+hid_t H5T_NATIVE_UINT64_g		= FAIL;
+hid_t H5T_NATIVE_INT_LEAST64_g		= FAIL;
+hid_t H5T_NATIVE_UINT_LEAST64_g		= FAIL;
+hid_t H5T_NATIVE_INT_FAST64_g		= FAIL;
+hid_t H5T_NATIVE_UINT_FAST64_g		= FAIL;
 
 /*
  * Alignment constraints for native types. These are initialized at run time
@@ -145,33 +149,33 @@ size_t H5T_NATIVE_LDOUBLE_ALIGN_g	= 0;
  * H5Tinit.c if the types are provided by the system. Otherwise we set their
  * values to 0 here (no alignment calculated).
  */
-size_t H5T_NATIVE_INT8_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT8_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_INT_LEAST8_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_LEAST8_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_INT_FAST8_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_FAST8_T_ALIGN_g	= 0;
-
-size_t H5T_NATIVE_INT16_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT16_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_INT_LEAST16_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_LEAST16_T_ALIGN_g= 0;
-size_t H5T_NATIVE_INT_FAST16_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_FAST16_T_ALIGN_g	= 0;
-
-size_t H5T_NATIVE_INT32_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT32_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_INT_LEAST32_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_LEAST32_T_ALIGN_g= 0;
-size_t H5T_NATIVE_INT_FAST32_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_FAST32_T_ALIGN_g	= 0;
-
-size_t H5T_NATIVE_INT64_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT64_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_INT_LEAST64_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_LEAST64_T_ALIGN_g= 0;
-size_t H5T_NATIVE_INT_FAST64_T_ALIGN_g	= 0;
-size_t H5T_NATIVE_UINT_FAST64_T_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT8_ALIGN_g		= 0;
+size_t H5T_NATIVE_UINT8_ALIGN_g		= 0;
+size_t H5T_NATIVE_INT_LEAST8_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_LEAST8_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_FAST8_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_FAST8_ALIGN_g	= 0;
+
+size_t H5T_NATIVE_INT16_ALIGN_g		= 0;
+size_t H5T_NATIVE_UINT16_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_LEAST16_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_LEAST16_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_FAST16_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_FAST16_ALIGN_g	= 0;
+
+size_t H5T_NATIVE_INT32_ALIGN_g		= 0;
+size_t H5T_NATIVE_UINT32_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_LEAST32_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_LEAST32_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_FAST32_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_FAST32_ALIGN_g	= 0;
+
+size_t H5T_NATIVE_INT64_ALIGN_g		= 0;
+size_t H5T_NATIVE_UINT64_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_LEAST64_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_LEAST64_ALIGN_g	= 0;
+size_t H5T_NATIVE_INT_FAST64_ALIGN_g	= 0;
+size_t H5T_NATIVE_UINT_FAST64_ALIGN_g	= 0;
 
 
 /*
@@ -266,152 +270,152 @@ H5T_init_interface(void)
      */
 
     /* int8 */
-    if (H5T_NATIVE_INT8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT8_T_g = H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT8_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT8_g = H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
-    if (H5T_NATIVE_UINT8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT8_T_g = H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT8_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT8_g = H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
-    if (H5T_NATIVE_INT_LEAST8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_LEAST8_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_LEAST8_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_LEAST8_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
-    if (H5T_NATIVE_UINT_LEAST8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT_LEAST8_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_LEAST8_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_LEAST8_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
-    if (H5T_NATIVE_INT_FAST8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_FAST8_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_FAST8_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_FAST8_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
-    if (H5T_NATIVE_UINT_FAST8_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT_FAST8_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_FAST8_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_FAST8_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 1;
 	dt->u.atomic.prec = 8;
     }
     
     /* int16 */
-    if (H5T_NATIVE_INT16_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT16_T_g = H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT16_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT16_g = H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
-    if (H5T_NATIVE_UINT16_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT16_T_g = H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT16_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT16_g = H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
-    if (H5T_NATIVE_INT_LEAST16_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_LEAST16_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_LEAST16_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_LEAST16_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
-    if (H5T_NATIVE_UINT_LEAST16_T_g<0) {
-	dt=H5I_object(H5T_NATIVE_UINT_LEAST16_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_LEAST16_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_LEAST16_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
-    if (H5T_NATIVE_INT_FAST16_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_FAST16_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_FAST16_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_FAST16_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
-    if (H5T_NATIVE_UINT_FAST16_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT_FAST16_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_FAST16_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_FAST16_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 2;
 	dt->u.atomic.prec = 16;
     }
     
     /* int32 */
-    if (H5T_NATIVE_INT32_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT32_T_g = H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT32_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT32_g = H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
-    if (H5T_NATIVE_UINT32_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT32_T_g = H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT32_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT32_g = H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
-    if (H5T_NATIVE_INT_LEAST32_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_LEAST32_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_LEAST32_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_LEAST32_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
-    if (H5T_NATIVE_UINT_LEAST32_T_g<0) {
-	dt=H5I_object(H5T_NATIVE_UINT_LEAST32_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_LEAST32_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_LEAST32_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
-    if (H5T_NATIVE_INT_FAST32_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_FAST32_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_FAST32_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_FAST32_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
-    if (H5T_NATIVE_UINT_FAST32_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT_FAST32_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_FAST32_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_FAST32_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 4;
 	dt->u.atomic.prec = 32;
     }
     
     /* int64 */
-    if (H5T_NATIVE_INT64_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT64_T_g = H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT64_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT64_g = H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;
     }
-    if (H5T_NATIVE_UINT64_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT64_T_g = H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT64_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT64_g = H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;
     }
-    if (H5T_NATIVE_INT_LEAST64_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_LEAST64_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_LEAST64_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_LEAST64_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;
     }
-    if (H5T_NATIVE_UINT_LEAST64_T_g<0) {
-	dt=H5I_object(H5T_NATIVE_UINT_LEAST64_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_LEAST64_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_LEAST64_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;
     }
-    if (H5T_NATIVE_INT_FAST64_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_INT_FAST64_T_g=H5Tcopy(H5T_NATIVE_INT_g));
+    if (H5T_NATIVE_INT_FAST64_g<0) {
+	dt = H5I_object(H5T_NATIVE_INT_FAST64_g=H5Tcopy(H5T_NATIVE_INT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;
     }
-    if (H5T_NATIVE_UINT_FAST64_T_g<0) {
-	dt = H5I_object(H5T_NATIVE_UINT_FAST64_T_g=H5Tcopy(H5T_NATIVE_UINT_g));
+    if (H5T_NATIVE_UINT_FAST64_g<0) {
+	dt = H5I_object(H5T_NATIVE_UINT_FAST64_g=H5Tcopy(H5T_NATIVE_UINT_g));
 	dt->state = H5T_STATE_IMMUTABLE;
 	dt->size = 8;
 	dt->u.atomic.prec = 64;