diff options
author | lrknox <lrknox> | 2017-05-16 15:33:09 (GMT) |
---|---|---|
committer | lrknox <lrknox> | 2017-05-16 15:33:09 (GMT) |
commit | 197b461bceee6b066ba7560766644ad2a26c361c (patch) | |
tree | c8e4b32b2f29ed95c2344917de15f979290161b2 | |
parent | 583952ed15819fc86897301774b91151129ad08e (diff) | |
parent | f5ee10c94f9c178393cca8c560ec73991159aa9f (diff) | |
download | hdf5-197b461bceee6b066ba7560766644ad2a26c361c.zip hdf5-197b461bceee6b066ba7560766644ad2a26c361c.tar.gz hdf5-197b461bceee6b066ba7560766644ad2a26c361c.tar.bz2 |
Merge branch 'hdf5_1_8' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_8
-rw-r--r-- | README.txt | 2 | ||||
-rw-r--r-- | c++/src/CMakeLists.txt | 2 | ||||
-rw-r--r-- | c++/src/cpp_doc_config | 2 | ||||
-rwxr-xr-x | configure | 22 | ||||
-rw-r--r-- | configure.ac | 2 | ||||
-rw-r--r-- | hl/src/H5LTparse.c | 144 | ||||
-rw-r--r-- | hl/src/H5LTparse.h | 4 | ||||
-rw-r--r-- | release_docs/RELEASE.txt | 2 | ||||
-rw-r--r-- | src/H5Dcompact.c | 6 | ||||
-rw-r--r-- | src/H5Dpkg.h | 1 | ||||
-rw-r--r-- | src/H5Dtest.c | 41 | ||||
-rw-r--r-- | src/H5public.h | 4 | ||||
-rw-r--r-- | test/dsets.c | 104 |
13 files changed, 243 insertions, 93 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.8.19-snap3 currently under development +HDF5 version 1.8.19-snap4 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt index 0a76d6f..579ef64 100644 --- a/c++/src/CMakeLists.txt +++ b/c++/src/CMakeLists.txt @@ -32,6 +32,7 @@ set (CPP_SRCS ${HDF5_CPP_SRC_SOURCE_DIR}/H5Group.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5IdComponent.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.cpp + ${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.cpp ${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.cpp @@ -68,6 +69,7 @@ set (CPP_HDRS ${HDF5_CPP_SRC_SOURCE_DIR}/H5IdComponent.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Include.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.h + ${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.h ${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.h diff --git a/c++/src/cpp_doc_config b/c++/src/cpp_doc_config index 27e581b..23e853c 100644 --- a/c++/src/cpp_doc_config +++ b/c++/src/cpp_doc_config @@ -38,7 +38,7 @@ PROJECT_NAME = "HDF5 C++ API" # could be handy for archiving the generated documentation or if some version # control system is used. -PROJECT_NUMBER = "1.8.19-snap3 currently under development" +PROJECT_NUMBER = "1.8.19-snap4 currently under development" # Using the PROJECT_BRIEF tag one can provide an optional one line description # for a project that appears at the top of each page and should give viewer a @@ -1,7 +1,7 @@ #! /bin/sh # From configure.ac Id. # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for HDF5 1.8.19-snap3. +# Generated by GNU Autoconf 2.69 for HDF5 1.8.19-snap4. # # Report bugs to <help@hdfgroup.org>. # @@ -591,8 +591,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.8.19-snap3' -PACKAGE_STRING='HDF5 1.8.19-snap3' +PACKAGE_VERSION='1.8.19-snap4' +PACKAGE_STRING='HDF5 1.8.19-snap4' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_URL='' @@ -1476,7 +1476,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.8.19-snap3 to adapt to many kinds of systems. +\`configure' configures HDF5 1.8.19-snap4 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1546,7 +1546,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.8.19-snap3:";; + short | recursive ) echo "Configuration of HDF5 1.8.19-snap4:";; esac cat <<\_ACEOF @@ -1741,7 +1741,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.8.19-snap3 +HDF5 configure 1.8.19-snap4 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -2678,7 +2678,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.8.19-snap3, which was +It was created by HDF5 $as_me 1.8.19-snap4, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -3549,7 +3549,7 @@ fi # Define the identity of the package. PACKAGE='hdf5' - VERSION='1.8.19-snap3' + VERSION='1.8.19-snap4' cat >>confdefs.h <<_ACEOF @@ -29296,7 +29296,7 @@ Usage: $0 [OPTIONS] Report bugs to <bug-libtool@gnu.org>." lt_cl_version="\ -HDF5 config.lt 1.8.19-snap3 +HDF5 config.lt 1.8.19-snap4 configured by $0, generated by GNU Autoconf 2.69. Copyright (C) 2011 Free Software Foundation, Inc. @@ -31331,7 +31331,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.8.19-snap3, which was +This file was extended by HDF5 $as_me 1.8.19-snap4, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -31397,7 +31397,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -HDF5 config.status 1.8.19-snap3 +HDF5 config.status 1.8.19-snap4 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" diff --git a/configure.ac b/configure.ac index efa4f13..7f34ad6c 100644 --- a/configure.ac +++ b/configure.ac @@ -26,7 +26,7 @@ AC_PREREQ([2.69]) ## NOTE: Do not forget to change the version number here when we do a ## release!!! ## -AC_INIT([HDF5], [1.8.19-snap3], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.8.19-snap4], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADERS([src/H5config.h]) diff --git a/hl/src/H5LTparse.c b/hl/src/H5LTparse.c index 6ca95c54..36591d3 100644 --- a/hl/src/H5LTparse.c +++ b/hl/src/H5LTparse.c @@ -1641,229 +1641,229 @@ yyreduce: switch (yyn) { case 2: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 101 "H5LTparse.y" { memset(arr_stack, 0, STACK_SIZE*sizeof(struct arr_info)); /*initialize here?*/ } break; case 3: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 102 "H5LTparse.y" { return (yyval.hid);} break; case 13: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 116 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I8BE); } break; case 14: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 117 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I8LE); } break; case 15: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 118 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I16BE); } break; case 16: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 119 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I16LE); } break; case 17: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 120 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I32BE); } break; case 18: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 121 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I32LE); } break; case 19: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 122 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I64BE); } break; case 20: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 123 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_I64LE); } break; case 21: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 124 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U8BE); } break; case 22: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 125 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U8LE); } break; case 23: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 126 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U16BE); } break; case 24: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 127 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U16LE); } break; case 25: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 128 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U32BE); } break; case 26: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 129 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U32LE); } break; case 27: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 130 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U64BE); } break; case 28: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 131 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_STD_U64LE); } break; case 29: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 132 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_CHAR); } break; case 30: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 133 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_SCHAR); } break; case 31: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 134 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_UCHAR); } break; case 32: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 135 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_SHORT); } break; case 33: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 136 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_USHORT); } break; case 34: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 137 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_INT); } break; case 35: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 138 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_UINT); } break; case 36: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 139 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_LONG); } break; case 37: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 140 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_ULONG); } break; case 38: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 141 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_LLONG); } break; case 39: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 142 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_ULLONG); } break; case 40: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 145 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_IEEE_F32BE); } break; case 41: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 146 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_IEEE_F32LE); } break; case 42: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 147 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_IEEE_F64BE); } break; case 43: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 148 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_IEEE_F64LE); } break; case 44: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 149 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_FLOAT); } break; case 45: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 150 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_DOUBLE); } break; case 46: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 151 "H5LTparse.y" { (yyval.hid) = H5Tcopy(H5T_NATIVE_LDOUBLE); } break; case 47: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 155 "H5LTparse.y" { csindex++; cmpd_stack[csindex].id = H5Tcreate(H5T_COMPOUND, 1); /*temporarily set size to 1*/ } break; case 48: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 157 "H5LTparse.y" { (yyval.hid) = cmpd_stack[csindex].id; cmpd_stack[csindex].id = 0; @@ -1873,13 +1873,13 @@ yyreduce: break; case 51: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 166 "H5LTparse.y" { cmpd_stack[csindex].is_field = 1; /*notify lexer a compound member is parsed*/ } break; case 52: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 168 "H5LTparse.y" { size_t origin_size, new_size; @@ -1915,7 +1915,7 @@ yyreduce: break; case 53: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 201 "H5LTparse.y" { (yyval.sval) = yylval.sval; @@ -1923,25 +1923,25 @@ yyreduce: break; case 54: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 206 "H5LTparse.y" { (yyval.ival) = 0; } break; case 55: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 208 "H5LTparse.y" { (yyval.ival) = yylval.ival; } break; case 57: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 212 "H5LTparse.y" { asindex++; /*pushd onto the stack*/ } break; case 58: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 214 "H5LTparse.y" { (yyval.hid) = H5Tarray_create2((yyvsp[(5) - (6)].hid), arr_stack[asindex].ndims, arr_stack[asindex].dims); @@ -1952,13 +1952,13 @@ yyreduce: break; case 61: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 224 "H5LTparse.y" { arr_stack[asindex].is_dim = 1; /*notice lexer of dimension size*/ } break; case 62: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 225 "H5LTparse.y" { unsigned ndims = arr_stack[asindex].ndims; arr_stack[asindex].dims[ndims] = (hsize_t)yylval.ival; @@ -1968,19 +1968,19 @@ yyreduce: break; case 65: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 236 "H5LTparse.y" { (yyval.hid) = H5Tvlen_create((yyvsp[(3) - (4)].hid)); H5Tclose((yyvsp[(3) - (4)].hid)); } break; case 66: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 241 "H5LTparse.y" { is_opq_size = 1; } break; case 67: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 242 "H5LTparse.y" { size_t size = (size_t)yylval.ival; @@ -1990,13 +1990,13 @@ yyreduce: break; case 68: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 247 "H5LTparse.y" { is_opq_tag = 1; } break; case 69: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 248 "H5LTparse.y" { H5Tset_tag((yyvsp[(7) - (13)].hid), yylval.sval); @@ -2005,19 +2005,19 @@ yyreduce: break; case 70: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 252 "H5LTparse.y" { (yyval.hid) = (yyvsp[(7) - (15)].hid); } break; case 73: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 260 "H5LTparse.y" { is_str_size = 1; } break; case 74: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 261 "H5LTparse.y" { if((yyvsp[(5) - (6)].ival) == H5T_VARIABLE_TOKEN) @@ -2029,7 +2029,7 @@ yyreduce: break; case 75: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 269 "H5LTparse.y" { if((yyvsp[(9) - (10)].ival) == H5T_STR_NULLTERM_TOKEN) @@ -2042,7 +2042,7 @@ yyreduce: break; case 76: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 278 "H5LTparse.y" { if((yyvsp[(13) - (14)].ival) == H5T_CSET_ASCII_TOKEN) @@ -2053,7 +2053,7 @@ yyreduce: break; case 77: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 285 "H5LTparse.y" { if((yyvsp[(17) - (18)].hid) == H5T_C_S1_TOKEN) @@ -2064,7 +2064,7 @@ yyreduce: break; case 78: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 292 "H5LTparse.y" { hid_t str_id = (yyvsp[(19) - (20)].hid); @@ -2085,67 +2085,67 @@ yyreduce: break; case 79: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 309 "H5LTparse.y" {(yyval.ival) = H5T_VARIABLE_TOKEN;} break; case 81: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 312 "H5LTparse.y" {(yyval.ival) = H5T_STR_NULLTERM_TOKEN;} break; case 82: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 313 "H5LTparse.y" {(yyval.ival) = H5T_STR_NULLPAD_TOKEN;} break; case 83: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 314 "H5LTparse.y" {(yyval.ival) = H5T_STR_SPACEPAD_TOKEN;} break; case 84: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 316 "H5LTparse.y" {(yyval.ival) = H5T_CSET_ASCII_TOKEN;} break; case 85: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 317 "H5LTparse.y" {(yyval.ival) = H5T_CSET_UTF8_TOKEN;} break; case 86: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 319 "H5LTparse.y" {(yyval.hid) = H5T_C_S1_TOKEN;} break; case 87: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 320 "H5LTparse.y" {(yyval.hid) = H5T_FORTRAN_S1_TOKEN;} break; case 88: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 324 "H5LTparse.y" { is_enum = 1; enum_id = H5Tenum_create((yyvsp[(3) - (4)].hid)); H5Tclose((yyvsp[(3) - (4)].hid)); } break; case 89: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 326 "H5LTparse.y" { is_enum = 0; /*reset*/ (yyval.hid) = enum_id; } break; case 92: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 331 "H5LTparse.y" { is_enum_memb = 1; /*indicate member of enum*/ @@ -2158,7 +2158,7 @@ yyreduce: break; case 93: -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 340 "H5LTparse.y" { char char_val=(char)yylval.ival; @@ -2205,7 +2205,7 @@ yyreduce: break; -/* Line 1807 of yacc.c */ +/* Line 1792 of yacc.c */ #line 2191 "H5LTparse.c" default: break; } diff --git a/hl/src/H5LTparse.h b/hl/src/H5LTparse.h index 621dacd..1461830 100644 --- a/hl/src/H5LTparse.h +++ b/hl/src/H5LTparse.h @@ -109,7 +109,7 @@ extern int H5LTyydebug; #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED typedef union YYSTYPE { -/* Line 2065 of yacc.c */ +/* Line 2058 of yacc.c */ #line 68 "H5LTparse.y" int ival; /*for integer token*/ @@ -117,7 +117,7 @@ typedef union YYSTYPE hid_t hid; /*for hid_t token*/ -/* Line 2065 of yacc.c */ +/* Line 2058 of yacc.c */ #line 122 "H5LTparse.h" } YYSTYPE; # define YYSTYPE_IS_TRIVIAL 1 diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index d30106f..21e3362 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,4 +1,4 @@ -HDF5 version 1.8.19-snap3 currently under development +HDF5 version 1.8.19-snap4 currently under development ================================================================================ INTRODUCTION diff --git a/src/H5Dcompact.c b/src/H5Dcompact.c index 0dd9797..b142f3b 100644 --- a/src/H5Dcompact.c +++ b/src/H5Dcompact.c @@ -371,9 +371,11 @@ H5D__compact_flush(H5D_t *dset, hid_t dxpl_id) /* Check if the buffered compact information is dirty */ if(dset->shared->layout.storage.u.compact.dirty) { - if(H5O_msg_write(&(dset->oloc), H5O_LAYOUT_ID, 0, H5O_UPDATE_TIME, &(dset->shared->layout), dxpl_id) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to update layout message") dset->shared->layout.storage.u.compact.dirty = FALSE; + if(H5O_msg_write(&(dset->oloc), H5O_LAYOUT_ID, 0, H5O_UPDATE_TIME, &(dset->shared->layout), dxpl_id) < 0) { + dset->shared->layout.storage.u.compact.dirty = TRUE; + HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to update layout message") + } } /* end if */ done: diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index b5ad673..8eaa1a4 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -712,6 +712,7 @@ H5_DLL htri_t H5D__mpio_opt_possible(const H5D_io_info_t *io_info, #ifdef H5D_TESTING H5_DLL herr_t H5D__layout_version_test(hid_t did, unsigned *version); H5_DLL herr_t H5D__layout_contig_size_test(hid_t did, hsize_t *size); +H5_DLL herr_t H5D__layout_compact_dirty_test(hid_t did, hbool_t *dirty); H5_DLL herr_t H5D__current_cache_size_test(hid_t did, size_t *nbytes_used, int *nused); #endif /* H5D_TESTING */ diff --git a/src/H5Dtest.c b/src/H5Dtest.c index e824be6..c74b844 100644 --- a/src/H5Dtest.c +++ b/src/H5Dtest.c @@ -142,6 +142,47 @@ done: /*-------------------------------------------------------------------------- NAME + H5D__layout_compact_dirty_test + PURPOSE + Determine the "dirty" flag of a compact layout for a dataset's layout information + USAGE + herr_t H5D__layout_compact_dirty_test(did, dirty) + hid_t did; IN: Dataset to query + hbool_t *dirty; OUT: Pointer to location to place "dirty" info + RETURNS + Non-negative on success, negative on failure + DESCRIPTION + Checks the "dirty" flag of a compact dataset. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + DO NOT USE THIS FUNCTION FOR ANYTHING EXCEPT TESTING + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +herr_t +H5D__layout_compact_dirty_test(hid_t did, hbool_t *dirty) +{ + H5D_t *dset; /* Pointer to dataset to query */ + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_PACKAGE + + /* Check args */ + if(NULL == (dset = (H5D_t *)H5I_object_verify(did, H5I_DATASET))) + HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a dataset") + + if(dirty) { + HDassert(dset->shared->layout.type == H5D_COMPACT); + *dirty = dset->shared->layout.storage.u.compact.dirty; + } /* end if */ + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5D__layout_compact_dirty_test() */ + + +/*-------------------------------------------------------------------------- + NAME H5D__current_cache_size_test PURPOSE Determine current the size of the dataset's chunk cache diff --git a/src/H5public.h b/src/H5public.h index a3fc793..0f7beda 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -93,9 +93,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 8 /* For minor interface/format changes */ #define H5_VERS_RELEASE 19 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "snap3" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap4" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.8.19-snap3" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.8.19-snap4" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/test/dsets.c b/test/dsets.c index 94a2d45..c936e3c 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -9081,6 +9081,109 @@ error: return -1; } /* end test_gather_error() */ +/*------------------------------------------------------------------------- + * Function: test_compact_dirty + * + * Purpose: Verify that issue #2 reported in HDFFV-10051 is fixed: + * --the layout "dirty" flag for a compact dataset is not reset + * properly after flushing the data at dataset close. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Vailin Choi; April 2017 + * + *------------------------------------------------------------------------- + */ +static herr_t +test_compact_dirty(hid_t fapl) +{ + hid_t fid = -1; /* File ID */ + hid_t did = -1; /* Dataset ID */ + hid_t sid = -1; /* Dataspace ID */ + hid_t dcpl = -1; /* Dataset creation property list */ + hsize_t dims[1] = {10}; /* Dimension */ + int wbuf[10]; /* Data buffer */ + char filename[FILENAME_BUF_SIZE]; /* Filename */ + int i; /* Local index variable */ + hbool_t dirty; /* The dirty flag */ + + TESTING("compact dataset repeated open/close and dirty flag"); + + /* Create a file */ + h5_fixname(FILENAME[1], fapl, filename, sizeof filename); + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + TEST_ERROR + + /* Initialize data */ + for(i = 0; i < 10; i++) + wbuf[i] = i; + + /* Create dataspace */ + if((sid = H5Screate_simple(1, dims, NULL)) < 0) + TEST_ERROR + + /* Set compact layout */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + TEST_ERROR + if(H5Pset_layout(dcpl, H5D_COMPACT) < 0) + TEST_ERROR + if(H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0) + TEST_ERROR + + /* Create a compact dataset */ + if((did = H5Dcreate2(fid, DSET_COMPACT_MAX_NAME, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + TEST_ERROR + + /* Write to the dataset */ + if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf) < 0) + TEST_ERROR + + /* Close the dataset */ + if(H5Dclose(did) < 0) + TEST_ERROR + + /* Open the dataset */ + if((did = H5Dopen2(fid, DSET_COMPACT_MAX_NAME, H5P_DEFAULT)) < 0) + TEST_ERROR + + /* Retrieve the "dirty" flag from the compact dataset layout */ + if(H5D__layout_compact_dirty_test(did, &dirty) < 0) + TEST_ERROR + + /* Verify that the "dirty" flag is false */ + if(dirty) + TEST_ERROR + + /* Close the dataset */ + if(H5Dclose(did) < 0) + TEST_ERROR + + /* Close the dataspace */ + if(H5Sclose(sid) < 0) + TEST_ERROR + + /* Close the dataset creation property list */ + if(H5Pclose(dcpl) < 0) + TEST_ERROR + + /* Close the file */ + if(H5Fclose(fid) < 0) + TEST_ERROR + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Sclose(sid); + H5Pclose(dcpl); + H5Dclose(did); + H5Fclose(fid); + } H5E_END_TRY; + return -1; +} /* test_compact_dirty() */ + /*------------------------------------------------------------------------- * Function: main @@ -9166,6 +9269,7 @@ main(void) nerrors += (test_simple_io(envval, my_fapl) < 0 ? 1 : 0); nerrors += (test_compact_io(my_fapl) < 0 ? 1 : 0); nerrors += (test_max_compact(my_fapl) < 0 ? 1 : 0); + nerrors += (test_compact_dirty(my_fapl) < 0 ? 1 : 0); nerrors += (test_conv_buffer(file) < 0 ? 1 : 0); nerrors += (test_tconv(file) < 0 ? 1 : 0); nerrors += (test_filters(file, my_fapl) < 0 ? 1 : 0); |