diff options
| author | Binh-Minh Ribler <bmribler@hdfgroup.org> | 2017-05-16 04:15:15 (GMT) |
|---|---|---|
| committer | Binh-Minh Ribler <bmribler@hdfgroup.org> | 2017-05-16 04:15:15 (GMT) |
| commit | 0fbb49ac81078a35f8d999bf9242d8a12b0921cf (patch) | |
| tree | bc884e91036c447416ba5e586cdc812a6e0bd751 | |
| parent | 4732761fe69bde35363f4041d2da13c3a1709663 (diff) | |
| parent | a98d4e42fa244ac48b4e7e8c2fc5010a96ef0d4b (diff) | |
| download | hdf5-0fbb49ac81078a35f8d999bf9242d8a12b0921cf.zip hdf5-0fbb49ac81078a35f8d999bf9242d8a12b0921cf.tar.gz hdf5-0fbb49ac81078a35f8d999bf9242d8a12b0921cf.tar.bz2 | |
Merge branch 'hdf5_1_8' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_8_bmr into hdf5_1_8
58 files changed, 1946 insertions, 1175 deletions
@@ -1,4 +1,4 @@ -HDF5 version 1.8.19-snap2 currently under development +HDF5 version 1.8.19-snap3 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ diff --git a/c++/Makefile.in b/c++/Makefile.in index cea1990..ec67f96 100644 --- a/c++/Makefile.in +++ b/c++/Makefile.in @@ -668,7 +668,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 @BUILD_CXX_CONDITIONAL_TRUE@SUBDIRS = src test DIST_SUBDIRS = src test examples -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -676,10 +676,12 @@ DIST_SUBDIRS = src test examples LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1181,6 +1183,7 @@ check-clean :: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1188,7 +1191,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in index d13f818..95ab397 100644 --- a/c++/examples/Makefile.in +++ b/c++/examples/Makefile.in @@ -648,7 +648,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -656,10 +656,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1134,6 +1136,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1141,7 +1144,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in index cc6682e..ce9c05a 100644 --- a/c++/src/Makefile.in +++ b/c++/src/Makefile.in @@ -744,7 +744,7 @@ DISTCLEANFILES = h5c++ libhdf5.settings # Mark this directory as part of the C++ API CXX_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -752,10 +752,12 @@ CXX_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1355,6 +1357,7 @@ mostlyclean-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1362,7 +1365,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/c++/src/cpp_doc_config b/c++/src/cpp_doc_config index b059e5e..27e581b 100644 --- a/c++/src/cpp_doc_config +++ b/c++/src/cpp_doc_config @@ -38,7 +38,7 @@ PROJECT_NAME = "HDF5 C++ API" # could be handy for archiving the generated documentation or if some version # control system is used. -PROJECT_NUMBER = "1.8.19-snap2 currently under development" +PROJECT_NUMBER = "1.8.19-snap3 currently under development" # Using the PROJECT_BRIEF tag one can provide an optional one line description # for a project that appears at the top of each page and should give viewer a diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in index a9a2434..e065782 100644 --- a/c++/test/Makefile.in +++ b/c++/test/Makefile.in @@ -686,7 +686,7 @@ testhdf5_SOURCES = testhdf5.cpp dsets.cpp tattr.cpp tarray.cpp \ # Tell conclude.am that these are C++ tests. CXX_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -694,10 +694,12 @@ CXX_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1188,6 +1190,7 @@ mostlyclean-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1195,7 +1198,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/config/conclude.am b/config/conclude.am index 1ba56fb..d380c9a 100644 --- a/config/conclude.am +++ b/config/conclude.am @@ -18,17 +18,19 @@ ## Textually included at the end of most HDF5 Makefiles.am. ## Contains build rules. -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to # be built at certain times. LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TESTS = $(TEST_PROG) $(TEST_SCRIPT) $(EXTRA_TEST) +dyndir=$(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) @@ -36,6 +38,7 @@ AM_SH_LOG_FLAGS = # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -43,7 +46,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ @@ -1,7 +1,7 @@ #! /bin/sh # From configure.ac Id. # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for HDF5 1.8.19-snap2. +# Generated by GNU Autoconf 2.69 for HDF5 1.8.19-snap3. # # Report bugs to <help@hdfgroup.org>. # @@ -591,8 +591,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.8.19-snap2' -PACKAGE_STRING='HDF5 1.8.19-snap2' +PACKAGE_VERSION='1.8.19-snap3' +PACKAGE_STRING='HDF5 1.8.19-snap3' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_URL='' @@ -1476,7 +1476,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.8.19-snap2 to adapt to many kinds of systems. +\`configure' configures HDF5 1.8.19-snap3 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1546,7 +1546,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.8.19-snap2:";; + short | recursive ) echo "Configuration of HDF5 1.8.19-snap3:";; esac cat <<\_ACEOF @@ -1741,7 +1741,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.8.19-snap2 +HDF5 configure 1.8.19-snap3 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -2678,7 +2678,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.8.19-snap2, which was +It was created by HDF5 $as_me 1.8.19-snap3, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -3549,7 +3549,7 @@ fi # Define the identity of the package. PACKAGE='hdf5' - VERSION='1.8.19-snap2' + VERSION='1.8.19-snap3' cat >>confdefs.h <<_ACEOF @@ -29296,7 +29296,7 @@ Usage: $0 [OPTIONS] Report bugs to <bug-libtool@gnu.org>." lt_cl_version="\ -HDF5 config.lt 1.8.19-snap2 +HDF5 config.lt 1.8.19-snap3 configured by $0, generated by GNU Autoconf 2.69. Copyright (C) 2011 Free Software Foundation, Inc. @@ -31331,7 +31331,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.8.19-snap2, which was +This file was extended by HDF5 $as_me 1.8.19-snap3, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -31397,7 +31397,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -HDF5 config.status 1.8.19-snap2 +HDF5 config.status 1.8.19-snap3 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" diff --git a/configure.ac b/configure.ac index f0a1bb3..efa4f13 100644 --- a/configure.ac +++ b/configure.ac @@ -26,7 +26,7 @@ AC_PREREQ([2.69]) ## NOTE: Do not forget to change the version number here when we do a ## release!!! ## -AC_INIT([HDF5], [1.8.19-snap2], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.8.19-snap3], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADERS([src/H5config.h]) diff --git a/examples/Makefile.in b/examples/Makefile.in index 1d9cbfc..98eacf6 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -659,7 +659,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -667,10 +667,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1164,6 +1166,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1171,7 +1174,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/fortran/Makefile.in b/fortran/Makefile.in index 313b99a..461591d 100644 --- a/fortran/Makefile.in +++ b/fortran/Makefile.in @@ -677,7 +677,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 # All directories that have Makefiles DIST_SUBDIRS = src test testpar examples -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -685,10 +685,12 @@ DIST_SUBDIRS = src test testpar examples LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1190,6 +1192,7 @@ check-clean :: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1197,7 +1200,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in index ac91c72..f5ceed7 100644 --- a/fortran/examples/Makefile.in +++ b/fortran/examples/Makefile.in @@ -660,7 +660,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -668,10 +668,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1155,6 +1157,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1162,7 +1165,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in index c976948..386c177 100644 --- a/fortran/src/Makefile.in +++ b/fortran/src/Makefile.in @@ -829,7 +829,7 @@ H5fortran_detect_SOURCES = H5fortran_detect.f90 # Mark this directory as part of the Fortran API FORTRAN_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -837,10 +837,12 @@ FORTRAN_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1500,6 +1502,7 @@ HDF5mpio.lo: $(srcdir)/H5FDmpioff.f90 H5f90global.lo H5_ff$(F_STATUS).lo # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1507,7 +1510,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in index a29ec52..2d917b2 100644 --- a/fortran/test/Makefile.in +++ b/fortran/test/Makefile.in @@ -791,7 +791,7 @@ MOSTLYCLEANFILES = *.tmp # from tests in conclude.am) FORTRAN_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -799,10 +799,12 @@ FORTRAN_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1463,6 +1465,7 @@ fflush2.chkexe_: fflush1.chkexe_ # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1470,7 +1473,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in index 27e576f..2b7a219 100644 --- a/fortran/testpar/Makefile.in +++ b/fortran/testpar/Makefile.in @@ -680,7 +680,7 @@ LDADD = $(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) $(LIBHDF5) # Mark this directory as part of the Fortran API FORTRAN_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -688,10 +688,12 @@ FORTRAN_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1135,6 +1137,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1142,7 +1145,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/Makefile.in b/hl/Makefile.in index e27d13f..9119498 100644 --- a/hl/Makefile.in +++ b/hl/Makefile.in @@ -674,7 +674,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 @BUILD_HDF5_HL_CONDITIONAL_TRUE@SUBDIRS = src test tools $(CXX_DIR) $(FORTRAN_DIR) DIST_SUBDIRS = src test tools c++ fortran examples -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -682,10 +682,12 @@ DIST_SUBDIRS = src test tools c++ fortran examples LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1191,6 +1193,7 @@ build-check-clean: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1198,7 +1201,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in index c267998..f56ff9c 100644 --- a/hl/c++/Makefile.in +++ b/hl/c++/Makefile.in @@ -668,7 +668,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 SUBDIRS = src test DIST_SUBDIRS = src test examples -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -676,10 +676,12 @@ DIST_SUBDIRS = src test examples LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1181,6 +1183,7 @@ check-clean :: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1188,7 +1191,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in index bcd4cc1..8dfd546 100644 --- a/hl/c++/examples/Makefile.in +++ b/hl/c++/examples/Makefile.in @@ -638,7 +638,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -646,10 +646,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1099,6 +1101,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1106,7 +1109,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in index 2ed452e..f11a2ed 100644 --- a/hl/c++/src/Makefile.in +++ b/hl/c++/src/Makefile.in @@ -711,7 +711,7 @@ libhdf5_hl_cpp_la_LIBADD = $(LIBH5_HL) $(LIBH5CPP) # Public headers include_HEADERS = H5PacketTable.h -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -719,10 +719,12 @@ include_HEADERS = H5PacketTable.h LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1245,6 +1247,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1252,7 +1255,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in index 25300fe..ac1a802 100644 --- a/hl/c++/test/Makefile.in +++ b/hl/c++/test/Makefile.in @@ -677,7 +677,7 @@ ptableTest_SOURCES = ptableTest.cpp # Tell conclude.am that these are C++ tests. CXX_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -685,10 +685,12 @@ CXX_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1155,6 +1157,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1162,7 +1165,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in index f1b5190..4bb96aa 100644 --- a/hl/examples/Makefile.in +++ b/hl/examples/Makefile.in @@ -653,7 +653,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -661,10 +661,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1138,6 +1140,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1145,7 +1148,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in index dab566f..d57a0f8 100644 --- a/hl/fortran/Makefile.in +++ b/hl/fortran/Makefile.in @@ -672,7 +672,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 SUBDIRS = src test DIST_SUBDIRS = src test examples -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -680,10 +680,12 @@ DIST_SUBDIRS = src test examples LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1185,6 +1187,7 @@ check-clean :: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1192,7 +1195,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in index 8f16c59..7c335c3 100644 --- a/hl/fortran/examples/Makefile.in +++ b/hl/fortran/examples/Makefile.in @@ -646,7 +646,7 @@ EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -654,10 +654,12 @@ CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1103,6 +1105,7 @@ installcheck-local: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1110,7 +1113,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in index 1497107..96233fa 100644 --- a/hl/fortran/src/Makefile.in +++ b/hl/fortran/src/Makefile.in @@ -732,7 +732,7 @@ libhdf5hl_fortran_la_SOURCES = H5DSfc.c H5LTfc.c H5IMfc.c H5IMcc.c H5TBfc.c \ # HDF5 HL Fortran library depends on HDF5 Library. libhdf5hl_fortran_la_LIBADD = $(LIBH5_HL) $(LIBH5F) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -740,10 +740,12 @@ libhdf5hl_fortran_la_LIBADD = $(LIBH5_HL) $(LIBH5F) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1293,6 +1295,7 @@ H5TBff.lo: $(srcdir)/H5TBff.f90 # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1300,7 +1303,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in index a1dcc20..1ecaa15 100644 --- a/hl/fortran/test/Makefile.in +++ b/hl/fortran/test/Makefile.in @@ -695,7 +695,7 @@ tsttable_SOURCES = tsttable.f90 # from tests in conclude.am) FORTRAN_API = yes -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -703,10 +703,12 @@ FORTRAN_API = yes LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1190,6 +1192,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1197,7 +1200,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/src/H5DO.c b/hl/src/H5DO.c index be5f658..982625a 100644 --- a/hl/src/H5DO.c +++ b/hl/src/H5DO.c @@ -44,7 +44,6 @@ H5DOwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *o { hbool_t created_dxpl = FALSE; /* Whether we created a DXPL */ hbool_t do_direct_write = TRUE; /* Flag for direct writes */ - hbool_t tt=FALSE; /* Flag for direct writes */ uint32_t data_size_32; /* Chunk data size (limited to 32-bits currently) */ herr_t ret_value = FAIL; /* Return value */ diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in index aee58b5..d386dc0 100644 --- a/hl/src/Makefile.in +++ b/hl/src/Makefile.in @@ -709,7 +709,7 @@ libhdf5_hl_la_LIBADD = $(LIBHDF5) # Public header files (to be installed) include_HEADERS = hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -717,10 +717,12 @@ include_HEADERS = hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1250,6 +1252,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1257,7 +1260,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in index 1a9b390..ffc4cf7 100644 --- a/hl/test/Makefile.in +++ b/hl/test/Makefile.in @@ -729,7 +729,7 @@ BUILD_ALL_PROGS = gen_test_ds # Sources for test_packet executable test_packet_SOURCES = test_packet.c test_packet_vlen.c -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -737,10 +737,12 @@ test_packet_SOURCES = test_packet.c test_packet_vlen.c LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1297,6 +1299,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1304,7 +1307,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/test/test_dset_opt.c b/hl/test/test_dset_opt.c index bec0ae3..e3e7569 100644 --- a/hl/test/test_dset_opt.c +++ b/hl/test/test_dset_opt.c @@ -20,7 +20,7 @@ #include "H5DOpublic.h" #include <math.h> -#if defined(H5_HAVE_ZLIB_H) && !defined(H5_ZLIB_HEADER) +#if defined(H5_HAVE_ZLIB_H) && !defined(H5_ZLIB_HEADER) # define H5_ZLIB_HEADER "zlib.h" #endif #if defined(H5_ZLIB_HEADER) @@ -29,25 +29,42 @@ #define FILE_NAME "test_dectris.h5" +/* Datasets for Direct Write tests */ #define DATASETNAME1 "direct_write" #define DATASETNAME2 "skip_one_filter" #define DATASETNAME3 "skip_two_filters" #define DATASETNAME4 "data_conv" #define DATASETNAME5 "contiguous_dset" #define DATASETNAME6 "invalid_argue" +#define DATASETNAME7 "overwrite_chunk" + +/* Datasets for Direct Read tests */ +#define DATASETNAME8 "disabled_chunk_cache" +#define DATASETNAME9 "read_w_valid_cache" +#define DATASETNAME10 "flush_chunk_cache" +#define DATASETNAME11 "unallocated_chunk" +#define DATASETNAME12 "unfiltered_data" + #define RANK 2 #define NX 16 #define NY 16 #define CHUNK_NX 4 #define CHUNK_NY 4 -#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001F)+12) +#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001)+12) /* Temporary filter IDs used for testing */ -#define H5Z_FILTER_BOGUS1 305 -#define H5Z_FILTER_BOGUS2 306 -#define ADD_ON 7 -#define FACTOR 3 +#define H5Z_FILTER_BOGUS1 305 +#define H5Z_FILTER_BOGUS2 306 +#define ADD_ON 7 +#define FACTOR 3 + +/* Constants for the overwrite test */ +#define OVERWRITE_NDIMS 3 +#define OVERWRITE_CHUNK_NX 3 +#define OVERWRITE_CHUNK_2NX 6 +#define OVERWRITE_CHUNK_NY 2 +#define OVERWRITE_VALUE 42 /* Local prototypes for filter functions */ static size_t filter_bogus1(unsigned int flags, size_t cd_nelmts, @@ -58,33 +75,33 @@ static size_t filter_bogus2(unsigned int flags, size_t cd_nelmts, /* This message derives from H5Z */ const H5Z_class2_t H5Z_BOGUS1[1] = {{ H5Z_CLASS_T_VERS, /* H5Z_class_t version */ - H5Z_FILTER_BOGUS1, /* Filter id number */ + H5Z_FILTER_BOGUS1, /* Filter id number */ 1, 1, /* Encoding and decoding enabled */ - "bogus1", /* Filter name for debugging */ + "bogus1", /* Filter name for debugging */ NULL, /* The "can apply" callback */ NULL, /* The "set local" callback */ - filter_bogus1, /* The actual filter function */ + filter_bogus1, /* The actual filter function */ }}; const H5Z_class2_t H5Z_BOGUS2[1] = {{ H5Z_CLASS_T_VERS, /* H5Z_class_t version */ - H5Z_FILTER_BOGUS2, /* Filter id number */ + H5Z_FILTER_BOGUS2, /* Filter id number */ 1, 1, /* Encoding and decoding enabled */ - "bogus2", /* Filter name for debugging */ + "bogus2", /* Filter name for debugging */ NULL, /* The "can apply" callback */ NULL, /* The "set local" callback */ - filter_bogus2, /* The actual filter function */ + filter_bogus2, /* The actual filter function */ }}; /*------------------------------------------------------------------------- - * Function: test_direct_chunk_write + * Function: test_direct_chunk_write * - * Purpose: Test the basic functionality of H5DOwrite_chunk/H5DOread_chunk + * Purpose: Test the basic functionality of H5DOwrite_chunk * - * Return: Success: 0 - * Failure: 1 + * Return: Success: 0 + * Failure: 1 * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -96,7 +113,7 @@ test_direct_chunk_write (hid_t file) hid_t dataspace = -1, dataset = -1; hid_t mem_space = -1; hid_t cparms = -1, dxpl = -1; - hsize_t dims[2] = {NX, NY}; + hsize_t dims[2] = {NX, NY}; hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; herr_t status; @@ -105,32 +122,24 @@ test_direct_chunk_write (hid_t file) int i, j, n; unsigned filter_mask = 0; - unsigned read_filter_mask = 0; int direct_buf[CHUNK_NX][CHUNK_NY]; int check_chunk[CHUNK_NX][CHUNK_NY]; hsize_t offset[2] = {0, 0}; size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); const Bytef *z_src = (const Bytef*)(direct_buf); - Bytef *z_dst; /*destination buffer */ - uLongf z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size); - uLong z_src_nbytes = (uLong)buf_size; - int aggression = 9; /* Compression aggression setting */ - void *outbuf = NULL; /* Pointer to new buffer */ - - /* For H5DOread_chunk() */ - void *readbuf = NULL; /* Buffer for reading data */ - const Bytef *pt_readbuf; /* Point to the buffer for data read */ - hsize_t read_chunk_nbytes; /* Size of chunk on disk */ - int read_dst_buf[CHUNK_NX][CHUNK_NY]; /* Buffer to hold un-compressed data */ - + Bytef *z_dst = NULL; /*destination buffer */ + uLongf z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size); + uLong z_src_nbytes = (uLong)buf_size; + int aggression = 9; /* Compression aggression setting */ + void *outbuf = NULL; /* Pointer to new buffer */ hsize_t start[2]; /* Start of hyperslab */ hsize_t stride[2]; /* Stride of hyperslab */ hsize_t count[2]; /* Block count */ hsize_t block[2]; /* Block sizes */ - TESTING("basic functionality of H5DOwrite_chunk/H5DOread_chunk"); + TESTING("basic functionality of H5DOwrite_chunk"); /* * Create the data space with unlimited dimensions. @@ -158,78 +167,29 @@ test_direct_chunk_write (hid_t file) * creation properties. */ if((dataset = H5Dcreate2(file, DATASETNAME1, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; + /* Initialize the dataset */ + for(i = n = 0; i < NX; i++) + for(j = 0; j < NY; j++) + data[i][j] = n++; + if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) goto error; - HDmemset(data, 0, sizeof(data)); - /* Initialize data for the first chunk */ - for(i = n = 0; i < CHUNK_NX; i++) - for(j = 0; j < CHUNK_NY; j++) - data[i][j] = n++; - - /* Write the data to the dataset. */ + /* + * Write the data for the dataset. It should stay in the chunk cache. + * It will be evicted from the cache by the H5DOwrite_chunk calls. + */ if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, - dxpl, data)) < 0) + dxpl, data)) < 0) goto error; - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) - goto error; - - if(H5Dclose(dataset) < 0) - goto error; - - if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0) - goto error; - - offset[0] = offset[1] = 0; - - /* Get the size of the compressed chunk */ - ret = H5Dget_chunk_storage_size(dataset, offset, &read_chunk_nbytes); - - readbuf = HDmalloc(read_chunk_nbytes); - pt_readbuf = (const Bytef *)readbuf; - - /* Test to use H5DOread_chunk() to read the chunk back */ - if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, readbuf)) < 0) - goto error; - - /* uncompress(Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen) */ - ret = uncompress((Bytef *)read_dst_buf, (uLongf *)&buf_size, pt_readbuf, (uLong)read_chunk_nbytes); - - /* Check for various zlib errors */ - if(Z_BUF_ERROR == ret) { - HDfprintf(stderr, "error: not enough room in output buffer"); - goto error; - } else if(Z_MEM_ERROR == ret) { - HDfprintf(stderr, "error: not enough memory"); - goto error; - } else if(Z_OK != ret) { - HDfprintf(stderr, "error: corrupted input data"); - goto error; - } - - /* Check that the values read are the same as the values written */ - for(i = 0; i < CHUNK_NX; i++) { - for(j = 0; j < CHUNK_NY; j++) { - if(data[i][j] != read_dst_buf[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" data=%d, read_dst_buf=%d\n", data[i][j], read_dst_buf[i][j]); - goto error; - } - } - } - - if(readbuf) - HDfree(readbuf); - /* Initialize data for one chunk */ for(i = n = 0; i < CHUNK_NX; i++) for(j = 0; j < CHUNK_NY; j++) - direct_buf[i][j] = n++; + direct_buf[i][j] = n++; /* Allocate output (compressed) buffer */ outbuf = HDmalloc(z_dst_nbytes); @@ -250,8 +210,8 @@ test_direct_chunk_write (hid_t file) goto error; } - /* Write the compressed chunk data repeatedly to cover all the chunks in the - * dataset, using the direct writing function. */ + /* Write the compressed chunk data repeatedly to cover all the chunks in the + * dataset, using the direct writing function. */ for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf); @@ -264,7 +224,7 @@ test_direct_chunk_write (hid_t file) if(outbuf) HDfree(outbuf); - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; if(H5Dclose(dataset) < 0) @@ -273,59 +233,6 @@ test_direct_chunk_write (hid_t file) if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0) goto error; - offset[0] = CHUNK_NX; - offset[1] = CHUNK_NY; - - /* Get the size of the compressed chunk */ - ret = H5Dget_chunk_storage_size(dataset, offset, &read_chunk_nbytes); - - if(read_chunk_nbytes != (hsize_t)z_dst_nbytes) { - HDfprintf(stderr, "Read/write chunk size not the same."); - goto error; - } - - readbuf = HDmalloc(read_chunk_nbytes); - pt_readbuf = (const Bytef *)readbuf; - - /* Test to use H5DOread_chunk() to read the chunk back */ - if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, readbuf)) < 0) - goto error; - - if(read_filter_mask != filter_mask) { - HDfprintf(stderr, " Read/write filter mask not the same."); - goto error; - } - - /* uncompress(Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen) */ - ret = uncompress((Bytef *)read_dst_buf, (uLongf *)&buf_size, pt_readbuf, (uLong)read_chunk_nbytes); - - /* Check for various zlib errors */ - if(Z_BUF_ERROR == ret) { - HDfprintf(stderr, "error: not enough room in output buffer"); - goto error; - } else if(Z_MEM_ERROR == ret) { - HDfprintf(stderr, "error: not enough memory"); - goto error; - } else if(Z_OK != ret) { - HDfprintf(stderr, "error: corrupted input data"); - goto error; - } - - /* Check that the values read are the same as the values written */ - for(i = 0; i < CHUNK_NX; i++) { - for(j = 0; j < CHUNK_NY; j++) { - if(direct_buf[i][j] != read_dst_buf[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, read_dst_buf=%d\n", direct_buf[i][j], read_dst_buf[i][j]); - goto error; - } - } - } - - if(readbuf) - HDfree(readbuf); - /* * Select hyperslab for one chunk in the file */ @@ -336,7 +243,7 @@ test_direct_chunk_write (hid_t file) if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) goto error; - /* Test to use H5Dread() to read the chunk back */ + /* Read the chunk back */ if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) goto error; @@ -344,19 +251,18 @@ test_direct_chunk_write (hid_t file) for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { if(direct_buf[i][j] != check_chunk[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); goto error; } } } - /* Reinitialize different data for one chunk */ for(i = 0; i < CHUNK_NX; i++) for(j = 0; j < CHUNK_NY; j++) - direct_buf[i][j] = i + j; + direct_buf[i][j] = i + j; /* Allocate output (compressed) buffer */ outbuf = HDmalloc(z_dst_nbytes); @@ -377,8 +283,8 @@ test_direct_chunk_write (hid_t file) goto error; } - /* Rewrite the compressed chunk data repeatedly to cover all the chunks in the - * dataset, using the direct writing function. */ + /* Rewrite the compressed chunk data repeatedly to cover all the chunks in the + * dataset, using the direct writing function. */ offset[0] = offset[1] = 0; for(i=0; i<NX/CHUNK_NX; i++) { for(j=0; j<NY/CHUNK_NY; j++) { @@ -392,7 +298,7 @@ test_direct_chunk_write (hid_t file) if(outbuf) HDfree(outbuf); - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; if(H5Dclose(dataset) < 0) @@ -401,60 +307,7 @@ test_direct_chunk_write (hid_t file) if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0) goto error; - offset[0] = CHUNK_NX; - offset[1] = CHUNK_NY; - - /* Get the size of the compressed chunk */ - ret = H5Dget_chunk_storage_size(dataset, offset, &read_chunk_nbytes); - - if(read_chunk_nbytes != (hsize_t)z_dst_nbytes) { - HDfprintf(stderr, "Read/write chunk size not the same."); - goto error; - } - - readbuf = HDmalloc(read_chunk_nbytes); - pt_readbuf = (const Bytef *)readbuf; - - /* Test to use H5DOread_chunk() to read the chunk back */ - if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, readbuf)) < 0) - goto error; - - if(read_filter_mask != filter_mask) { - HDfprintf(stderr, " Read/write filter mask not the same."); - goto error; - } - - /* uncompress(Bytef *dest, uLongf *destLen, const Bytef *source, uLong sourceLen) */ - ret = uncompress((Bytef *)read_dst_buf, (uLongf *)&buf_size, pt_readbuf, (uLong)read_chunk_nbytes); - - /* Check for various zlib errors */ - if(Z_BUF_ERROR == ret) { - HDfprintf(stderr, "error: not enough room in output buffer"); - goto error; - } else if(Z_MEM_ERROR == ret) { - HDfprintf(stderr, "error: not enough memory"); - goto error; - } else if(Z_OK != ret) { - HDfprintf(stderr, "error: corrupted input data"); - goto error; - } - - /* Check that the values read are the same as the values written */ - for(i = 0; i < CHUNK_NX; i++) { - for(j = 0; j < CHUNK_NY; j++) { - if(direct_buf[i][j] != read_dst_buf[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, my_buf=%d\n", direct_buf[i][j], read_dst_buf[i][j]); - goto error; - } - } - } - - if(readbuf) - HDfree(readbuf); - - /* Test to use H5Dread() to read the chunk back */ + /* Read the chunk back */ if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) goto error; @@ -462,9 +315,9 @@ test_direct_chunk_write (hid_t file) for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { if(direct_buf[i][j] != check_chunk[i][j]) { - printf(" 2. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); + HDprintf(" 2. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); goto error; } } @@ -478,7 +331,7 @@ test_direct_chunk_write (hid_t file) H5Sclose(dataspace); H5Pclose(cparms); H5Pclose(dxpl); - + PASSED(); return 0; @@ -493,23 +346,126 @@ error: if(outbuf) HDfree(outbuf); - if(readbuf) - HDfree(readbuf); return 1; -} /* test_direct_chunk_write() */ -#endif +} +#endif /* H5_HAVE_FILTER_DEFLATE */ + +/*------------------------------------------------------------------------- + * Function: test_direct_chunk_overwrite_data + * + * Purpose: Test overwriting a chunk with new data. + * + * Return: Success: 0 + * Failure: 1 + * + * Programmer: Dana Robinson + * Spring 2017 + * + *------------------------------------------------------------------------- + */ +static int +test_direct_chunk_overwrite_data(hid_t fid) +{ + size_t buf_size = OVERWRITE_CHUNK_NX * OVERWRITE_CHUNK_NY * sizeof(int16_t); + int16_t data_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_NX]; + int16_t overwrite_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_NX]; + uint32_t filter_mask = 0; + hid_t tid = H5T_NATIVE_UINT16; + hid_t dcpl_id = -1; + hid_t sid = -1; + hid_t did = -1; + uint16_t fill_value = 0; + hsize_t dset_dims[] = {1, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_2NX}; + hsize_t dset_max_dims[] = {H5S_UNLIMITED, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_2NX}; + hsize_t chunk_dims[] = {1, OVERWRITE_CHUNK_NY, OVERWRITE_CHUNK_NX}; + hsize_t offset[] = {0, 0, 0}; + hsize_t i, j; + int16_t n; + int16_t read_buf[OVERWRITE_CHUNK_NY][OVERWRITE_CHUNK_2NX]; + + TESTING("overwriting existing data with H5DOwrite_chunk"); + + /* Create the dataset's data space */ + if ((sid = H5Screate_simple(OVERWRITE_NDIMS, dset_dims, dset_max_dims)) < 0) + FAIL_STACK_ERROR + + /* Set chunk size and filll value */ + if ((dcpl_id = H5Pcreate(H5P_DATASET_CREATE)) < 0) + FAIL_STACK_ERROR + if (H5Pset_fill_value(dcpl_id, tid, &fill_value) < 0) + FAIL_STACK_ERROR + if (H5Pset_chunk(dcpl_id, OVERWRITE_NDIMS, chunk_dims) < 0) + FAIL_STACK_ERROR + + /* Create dataset */ + if ((did = H5Dcreate2(fid, DATASETNAME7, tid, sid, H5P_DEFAULT, dcpl_id, H5P_DEFAULT)) < 0) + FAIL_STACK_ERROR + + /* Initialize data buffers */ + n = 0; + for (i = 0; i < OVERWRITE_CHUNK_NY; i++) { + for (j = 0; j < OVERWRITE_CHUNK_NX; j++) { + data_buf[i][j] = n++; + overwrite_buf[i][j] = OVERWRITE_VALUE; + } + } + + /* Write chunk data using the direct write function. */ + if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) + FAIL_STACK_ERROR + + /* Write second chunk. */ + offset[2] = OVERWRITE_CHUNK_NX; + if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, data_buf) < 0) + FAIL_STACK_ERROR + + /* Overwrite first chunk. */ + offset[2] = 0; + if (H5DOwrite_chunk(did, H5P_DEFAULT, filter_mask, offset, buf_size, overwrite_buf) < 0) + FAIL_STACK_ERROR + + /* Read the data back out */ + if (H5Dread(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, read_buf) < 0) + FAIL_STACK_ERROR + + /* Ensure that the data are correct in chunk 1 */ + for (i = 0; i < OVERWRITE_CHUNK_NY; i++) + for (j = 0; j < OVERWRITE_CHUNK_NX; j++) { + if (read_buf[i][j] != OVERWRITE_VALUE) + TEST_ERROR + } + + if (H5Pclose(dcpl_id) < 0) + FAIL_STACK_ERROR + if (H5Sclose(sid) < 0) + FAIL_STACK_ERROR + if (H5Dclose(did) < 0) + FAIL_STACK_ERROR + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Pclose(dcpl_id); + H5Sclose(sid); + H5Dclose(did); + } H5E_END_TRY; + + return 1; +} /* end test_direct_chunk_overwrite_data() */ /*------------------------------------------------------------------------- * Function: test_skip_compress_write1 * - * Purpose: Test skipping compression filter when it is the only filter + * Purpose: Test skipping compression filter when it is the only filter * for the dataset * - * Return: Success: 0 - * Failure: 1 + * Return: Success: 0 + * Failure: 1 * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -520,20 +476,23 @@ test_skip_compress_write1(hid_t file) hid_t dataspace = -1, dataset = -1; hid_t mem_space = -1; hid_t cparms = -1, dxpl = -1; - hsize_t dims[2] = {NX, NY}; + hsize_t dims[2] = {NX, NY}; hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; herr_t status; int i, j, n; unsigned filter_mask = 0; - unsigned read_filter_mask = 0; int direct_buf[CHUNK_NX][CHUNK_NY]; int check_chunk[CHUNK_NX][CHUNK_NY]; hsize_t offset[2] = {0, 0}; size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); int aggression = 9; /* Compression aggression setting */ + unsigned read_filter_mask = 0; /* filter mask after direct read */ + int read_direct_buf[CHUNK_NX][CHUNK_NY]; + hsize_t read_buf_size = 0; /* buf size */ + hsize_t start[2]; /* Start of hyperslab */ hsize_t stride[2]; /* Stride of hyperslab */ hsize_t count[2]; /* Block count */ @@ -567,7 +526,7 @@ test_skip_compress_write1(hid_t file) * creation properties. */ if((dataset = H5Dcreate2(file, DATASETNAME2, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) @@ -576,11 +535,11 @@ test_skip_compress_write1(hid_t file) /* Initialize data for one chunk */ for(i = n = 0; i < CHUNK_NX; i++) for(j = 0; j < CHUNK_NY; j++) { - direct_buf[i][j] = n++; - } + direct_buf[i][j] = n++; + } - /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function. - * Indicate skipping the compression filter. */ + /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function. + * Indicate skipping the compression filter. */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; @@ -589,7 +548,7 @@ test_skip_compress_write1(hid_t file) if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; if(H5Dclose(dataset) < 0) @@ -598,50 +557,52 @@ test_skip_compress_write1(hid_t file) if((dataset = H5Dopen2(file, DATASETNAME2, H5P_DEFAULT)) < 0) goto error; - /* Use H5DOread_chunk() to read the uncompressed data */ - if((status = H5DOread_chunk(dataset, dxpl, offset, &read_filter_mask, check_chunk)) < 0) + /* + * Select hyperslab for the chunk just written in the file + */ + start[0] = CHUNK_NX; start[1] = CHUNK_NY; + stride[0] = 1; stride[1] = 1; + count[0] = 1; count[1] = 1; + block[0] = CHUNK_NX; block[1] = CHUNK_NY; + if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) goto error; - if(read_filter_mask != filter_mask) { - HDfprintf(stderr, " Read/write filter mask not the same."); + /* Read the chunk back */ + if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) goto error; - } /* Check that the values read are the same as the values written */ for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { if(direct_buf[i][j] != check_chunk[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); goto error; } } } - /* Clear the buffer */ - HDmemset(check_chunk, 0, buf_size); - /* - * Select hyperslab for the chunk just written in the file - */ - start[0] = CHUNK_NX; start[1] = CHUNK_NY; - stride[0] = 1; stride[1] = 1; - count[0] = 1; count[1] = 1; - block[0] = CHUNK_NX; block[1] = CHUNK_NY; - if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) + /* Query chunk storage size */ + if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0) + goto error; + if(read_buf_size != buf_size) goto error; - /* Use H5Dread() to read the chunk back */ - if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) + /* Read the raw chunk back */ + HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf)); + if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) + goto error; + if(read_filter_mask != filter_mask) goto error; - /* Check that the values read are the same as the values written */ + /* Check that the direct chunk read is the same as the chunk written */ for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { - if(direct_buf[i][j] != check_chunk[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]); + if(direct_buf[i][j] != read_direct_buf[i][j]) { + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" direct_buf=%d, read_direct_buf=%d\n", direct_buf[i][j], read_direct_buf[i][j]); goto error; } } @@ -655,7 +616,7 @@ test_skip_compress_write1(hid_t file) H5Sclose(dataspace); H5Pclose(cparms); H5Pclose(dxpl); - + PASSED(); return 0; @@ -669,16 +630,16 @@ error: } H5E_END_TRY; return 1; -} +} /* test_skip_compress_write1() */ /*------------------------------------------------------------------------- - * Function: filter_bogus1 + * Function: filter_bogus1 * - * Purpose: A bogus filter that adds ADD_ON to the original value + * Purpose: A bogus filter that adds ADD_ON to the original value * - * Return: Success: Data chunk size + * Return: Success: Data chunk size * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -707,16 +668,16 @@ filter_bogus1(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, } /* end else */ return nbytes; -} +} /* filter_bogus1() */ /*------------------------------------------------------------------------- - * Function: filter_bogus2 + * Function: filter_bogus2 * - * Purpose: A bogus filter that multiplies the original value by FACTOR. + * Purpose: A bogus filter that multiplies the original value by FACTOR. * - * Return: Success: Data chunk size + * Return: Success: Data chunk size * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 *------------------------------------------------------------------------- */ @@ -744,18 +705,18 @@ filter_bogus2(unsigned int flags, size_t H5_ATTR_UNUSED cd_nelmts, } /* end else */ return nbytes; -} +} /* filter_bogus2() */ /*------------------------------------------------------------------------- - * Function: test_skip_compress_write2 + * Function: test_skip_compress_write2 * - * Purpose: Test skipping compression filter when there are three filters + * Purpose: Test skipping compression filter when there are three filters * for the dataset * - * Return: Success: 0 - * Failure: 1 + * Return: Success: 0 + * Failure: 1 * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -766,25 +727,28 @@ test_skip_compress_write2(hid_t file) hid_t dataspace = -1, dataset = -1; hid_t mem_space = -1; hid_t cparms = -1, dxpl = -1; - hsize_t dims[2] = {NX, NY}; + hsize_t dims[2] = {NX, NY}; hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; herr_t status; int i, j, n; - unsigned filter_mask = 0; - unsigned read_filter_mask = 0; + unsigned filter_mask = 0; /* orig filter mask */ int origin_direct_buf[CHUNK_NX][CHUNK_NY]; int direct_buf[CHUNK_NX][CHUNK_NY]; int check_chunk[CHUNK_NX][CHUNK_NY]; hsize_t offset[2] = {0, 0}; size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); - int aggression = 9; /* Compression aggression setting */ + int aggression = 9; /* Compression aggression setting */ - hsize_t start[2]; /* Start of hyperslab */ - hsize_t stride[2]; /* Stride of hyperslab */ - hsize_t count[2]; /* Block count */ - hsize_t block[2]; /* Block sizes */ + unsigned read_filter_mask = 0; /* filter mask after direct read */ + int read_direct_buf[CHUNK_NX][CHUNK_NY]; + hsize_t read_buf_size = 0; /* buf size */ + + hsize_t start[2]; /* Start of hyperslab */ + hsize_t stride[2]; /* Stride of hyperslab */ + hsize_t count[2]; /* Block count */ + hsize_t block[2]; /* Block sizes */ TESTING("skipping compression filters but keep two other filters"); @@ -808,10 +772,10 @@ test_skip_compress_write2(hid_t file) goto error; /* Register and enable first bogus filter */ - if(H5Zregister (H5Z_BOGUS1) < 0) + if(H5Zregister (H5Z_BOGUS1) < 0) goto error; - if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS1, 0, (size_t)0, NULL) < 0) + if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS1, 0, (size_t)0, NULL) < 0) goto error; /* Enable compression filter */ @@ -819,10 +783,10 @@ test_skip_compress_write2(hid_t file) goto error; /* Register and enable second bogus filter */ - if(H5Zregister (H5Z_BOGUS2) < 0) + if(H5Zregister (H5Z_BOGUS2) < 0) goto error; - if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS2, 0, (size_t)0, NULL) < 0) + if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS2, 0, (size_t)0, NULL) < 0) goto error; /* @@ -830,7 +794,7 @@ test_skip_compress_write2(hid_t file) * creation properties. */ if((dataset = H5Dcreate2(file, DATASETNAME3, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) @@ -843,8 +807,8 @@ test_skip_compress_write2(hid_t file) direct_buf[i][j] = (origin_direct_buf[i][j] + ADD_ON) * FACTOR; } - /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function. - * Indicate skipping the compression filter but keep the other two bogus filters */ + /* write the uncompressed chunk data repeatedly to dataset, using the direct writing function. + * Indicate skipping the compression filter but keep the other two bogus filters */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; @@ -854,7 +818,7 @@ test_skip_compress_write2(hid_t file) if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; if(H5Dclose(dataset) < 0) @@ -863,56 +827,52 @@ test_skip_compress_write2(hid_t file) if((dataset = H5Dopen2(file, DATASETNAME3, H5P_DEFAULT)) < 0) goto error; - /* Use H5DOread_chunk() to read the uncompressed data */ - if((status = H5DOread_chunk(dataset, dxpl, offset, &read_filter_mask, check_chunk)) < 0) + /* + * Select hyperslab for one chunk in the file + */ + start[0] = CHUNK_NX; start[1] = CHUNK_NY; + stride[0] = 1; stride[1] = 1; + count[0] = 1; count[1] = 1; + block[0] = CHUNK_NX; block[1] = CHUNK_NY; + if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) goto error; - if(read_filter_mask != filter_mask) { - HDfprintf(stderr, " Read/write filter mask not the same."); + /* Read the chunk back */ + if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) goto error; - } - - /* De-compress the operations of the two bogus filters to the chunk */ - for(i = n = 0; i < CHUNK_NX; i++) - for(j = 0; j < CHUNK_NY; j++) - check_chunk[i][j] = (check_chunk[i][j]/FACTOR) - ADD_ON; /* Check that the values read are the same as the values written */ for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { if(origin_direct_buf[i][j] != check_chunk[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]); + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]); goto error; } } } - /* Clear the buffer */ - HDmemset(check_chunk, 0, buf_size); - - /* - * Select hyperslab for one chunk in the file - */ - start[0] = CHUNK_NX; start[1] = CHUNK_NY; - stride[0] = 1; stride[1] = 1; - count[0] = 1; count[1] = 1; - block[0] = CHUNK_NX; block[1] = CHUNK_NY; - if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) + /* Query chunk storage size */ + if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0) + goto error; + if(read_buf_size != buf_size) goto error; - /* Use H5Dread() to read the chunk back */ - if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) + /* Read the raw chunk back */ + HDmemset(&read_direct_buf, 0, sizeof(read_direct_buf)); + if((status = H5DOread_chunk(dataset, H5P_DEFAULT, offset, &read_filter_mask, read_direct_buf)) < 0) + goto error; + if(read_filter_mask != filter_mask) goto error; - /* Check that the values read are the same as the values written */ + /* Check that the direct chunk read is the same as the chunk written */ for(i = 0; i < CHUNK_NX; i++) { for(j = 0; j < CHUNK_NY; j++) { - if(origin_direct_buf[i][j] != check_chunk[i][j]) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]); + if(direct_buf[i][j] != read_direct_buf[i][j]) { + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" direct_buf=%d, read_direct_buf=%d\n", direct_buf[i][j], read_direct_buf[i][j]); goto error; } } @@ -926,7 +886,7 @@ test_skip_compress_write2(hid_t file) H5Sclose(dataspace); H5Pclose(cparms); H5Pclose(dxpl); - + PASSED(); return 0; @@ -940,17 +900,17 @@ error: } H5E_END_TRY; return 1; -} +} /* test_skip_compress_write2() */ /*------------------------------------------------------------------------- - * Function: test_data_conv + * Function: test_data_conv * - * Purpose: Test data conversion + * Purpose: Test data conversion * - * Return: Success: 0 - * Failure: 1 + * Return: Success: 0 + * Failure: 1 * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -968,13 +928,13 @@ test_data_conv(hid_t file) hid_t dataspace = -1, dataset = -1; hid_t mem_space = -1; hid_t cparms = -1, dxpl = -1; - hsize_t dims[2] = {NX, NY}; + hsize_t dims[2] = {NX, NY}; hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; herr_t status; int i, j, n; - const hsize_t four = 4; - hid_t st=-1, dt=-1; + const hsize_t four = 4; + hid_t st=-1, dt=-1; hid_t array_dt; unsigned filter_mask = 0; @@ -1038,7 +998,7 @@ test_data_conv(hid_t file) * creation properties. */ if((dataset = H5Dcreate2(file, DATASETNAME4, st, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) @@ -1058,7 +1018,7 @@ test_data_conv(hid_t file) } } - /* write the chunk data to dataset, using the direct writing function. + /* write the chunk data to dataset, using the direct writing function. * There should be no data conversion involved. */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; @@ -1066,7 +1026,7 @@ test_data_conv(hid_t file) if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0) goto error; - if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) goto error; if(H5Dclose(dataset) < 0) @@ -1090,13 +1050,13 @@ test_data_conv(hid_t file) (direct_buf[i][j]).c[3] != (read_chunk[i][j]).c[3] || (direct_buf[i][j]).d != (read_chunk[i][j]).d || (direct_buf[i][j]).e != (read_chunk[i][j]).e) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", - (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", + (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], (direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e); - printf(" dst={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", - (read_chunk[i][j]).a, (read_chunk[i][j]).b, (read_chunk[i][j]).c[0], (read_chunk[i][j]).c[1], + HDprintf(" dst={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", + (read_chunk[i][j]).a, (read_chunk[i][j]).b, (read_chunk[i][j]).c[0], (read_chunk[i][j]).c[1], (read_chunk[i][j]).c[2], (read_chunk[i][j]).c[3], (read_chunk[i][j]).d, (read_chunk[i][j]).e); goto error; @@ -1127,13 +1087,13 @@ test_data_conv(hid_t file) (direct_buf[i][j]).c[2] != (check_chunk[i][j]).c[2] || (direct_buf[i][j]).c[3] != (check_chunk[i][j]).c[3] || (direct_buf[i][j]).e != (check_chunk[i][j]).e) { - printf(" 1. Read different values than written."); - printf(" At index %d,%d\n", i, j); - printf(" src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", - (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], + HDprintf(" 1. Read different values than written."); + HDprintf(" At index %d,%d\n", i, j); + HDprintf(" src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n", + (direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1], (direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e); - printf(" dst={a=%d, c=[%d,%d,%d,%d], e=%d\n", - (check_chunk[i][j]).a, (check_chunk[i][j]).c[0], (check_chunk[i][j]).c[1], (check_chunk[i][j]).c[2], + HDprintf(" dst={a=%d, c=[%d,%d,%d,%d], e=%d\n", + (check_chunk[i][j]).a, (check_chunk[i][j]).c[0], (check_chunk[i][j]).c[1], (check_chunk[i][j]).c[2], (check_chunk[i][j]).c[3], (check_chunk[i][j]).e); goto error; @@ -1168,17 +1128,17 @@ error: } H5E_END_TRY; return 1; -} +} /* test_data_conv() */ /*------------------------------------------------------------------------- - * Function: test_invalid_parameters + * Function: test_invalid_parameters * - * Purpose: Test invalid parameters for H5DOwrite_chunk and H5DOread_chunk + * Purpose: Test invalid parameters for H5DOwrite_chunk and H5DOread_chunk * - * Return: Success: 0 - * ` Failure: 1 + * Return: Success: 0 + * Failure: 1 * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -1189,7 +1149,7 @@ test_invalid_parameters(hid_t file) hid_t dataspace = -1, dataset = -1; hid_t mem_space = -1; hid_t cparms = -1, dxpl = -1; - hsize_t dims[2] = {NX, NY}; + hsize_t dims[2] = {NX, NY}; hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; herr_t status; int i, j, n; @@ -1223,7 +1183,7 @@ test_invalid_parameters(hid_t file) * Create a new contiguous dataset to verify H5DOwrite_chunk/H5DOread_chunk doesn't work */ if((dataset = H5Dcreate2(file, DATASETNAME5, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) @@ -1272,10 +1232,10 @@ test_invalid_parameters(hid_t file) * creation properties. */ if((dataset = H5Dcreate2(file, DATASETNAME6, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, - cparms, H5P_DEFAULT)) < 0) + cparms, H5P_DEFAULT)) < 0) goto error; - /* Check invalid dataset ID for H5DOwrite_chunk and H5DOread_chunk */ + /* Check invalid dataset ID for H5DOwrite_chunk and H5DOread_chunk */ H5E_BEGIN_TRY { if((status = H5DOwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; @@ -1337,7 +1297,7 @@ test_invalid_parameters(hid_t file) /* Check invalid buffer size for H5DOwrite_chunk only */ offset[0] = CHUNK_NX; offset[1] = CHUNK_NY; - buf_size = 0; + buf_size = 0; H5E_BEGIN_TRY { if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL) goto error; @@ -1365,7 +1325,7 @@ test_invalid_parameters(hid_t file) H5Sclose(dataspace); H5Pclose(cparms); H5Pclose(dxpl); - + PASSED(); return 0; @@ -1379,18 +1339,640 @@ error: } H5E_END_TRY; return 1; -} +} /* test_invalid_parameters() */ + +/*------------------------------------------------------------------------- + * Function: test_direct_chunk_read_no_cache + * + * Purpose: Test the basic functionality of H5DOread_chunk with the + * chunk cache diabled. + * + * Return: Success: 0 + * Failure: 1 + * + * Programmer: Matthew Strong (GE Healthcare) + * 14 February 2016 + * + *------------------------------------------------------------------------- + */ +#ifdef H5_HAVE_FILTER_DEFLATE +static int +test_direct_chunk_read_no_cache (hid_t file) +{ + hid_t dataspace = -1, dataset = -1; + hid_t mem_space = -1; + hid_t cparms = -1, dxpl = -1, dapl = -1; + hsize_t dims[2] = {NX, NY}; + hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims[2] = {CHUNK_NX, CHUNK_NY}; + herr_t status; /* status from H5 function calls */ + int ret; /* deflate return status */ + int data[NX][NY]; + int i, j, k, l, n; /* local index variables */ + + unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ + int check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */ + hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); + + Bytef *z_src = NULL; /* source buffer */ + uLongf z_src_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size); + Bytef *z_dst = (Bytef*)(direct_buf); + uLong z_dst_nbytes = (uLong)buf_size; + int aggression = 9; /* Compression aggression setting */ + void *outbuf = NULL; /* Pointer to new buffer */ + + hsize_t start[2]; /* Start of hyperslab */ + hsize_t stride[2]; /* Stride of hyperslab */ + hsize_t count[2]; /* Block count */ + hsize_t block[2]; /* Block sizes */ + + TESTING("basic functionality of H5DOread_chunk (chunk cache disabled)"); + + /* Create the data space with unlimited dimensions. */ + if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) + goto error; + if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0) + goto error; + + /* Modify dataset creation properties, i.e. enable chunking and compression */ + if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0) + goto error; + if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0) + goto error; + if((dapl = H5Pcreate(H5P_DATASET_ACCESS)) < 0) + goto error; + + /* Disable chunk cache by setting number of slots to 0 */ + if((status = H5Pset_chunk_cache(dapl, 0, H5D_CHUNK_CACHE_NBYTES_DEFAULT, H5D_CHUNK_CACHE_W0_DEFAULT)) < 0) + goto error; + + /* Create a new dataset within the file using cparms creation properties. */ + if((dataset = H5Dcreate2(file, DATASETNAME8, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, + cparms, dapl)) < 0) + goto error; + + /* Initialize the dataset */ + for(i = n = 0; i < NX; i++) + for(j = 0; j < NY; j++) + data[i][j] = n++; + + if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + + /* Write the data for the dataset. + * Data will skip chunk cache and go directly to disk. */ + if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + dxpl, data)) < 0) + goto error; + + /* Allocate output (compressed) buffer */ + outbuf = HDmalloc(z_src_nbytes); + z_src = (Bytef *)outbuf; + + /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + for(i=0; i<NX/CHUNK_NX; i++) { + for(j=0; j<NY/CHUNK_NY; j++) { + /* Select hyperslab for one chunk in the file */ + start[0] = (hsize_t)i * CHUNK_NX; start[1] = (hsize_t)j * CHUNK_NY; + stride[0] = 1; stride[1] = 1; + count[0] = 1; count[1] = 1; + block[0] = CHUNK_NX; block[1] = CHUNK_NY; + + /* Hyperslab selection equals single chunk */ + if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) + goto error; + + /* Read the chunk back */ + if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) + goto error; + + offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY; + /* Read the compressed chunk back using the direct read function. */ + if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) + goto error; + + /* Check filter mask return value */ + if(filter_mask != 0) + goto error; + + /* Perform decompression from the source to the destination buffer */ + ret = uncompress(z_dst, &z_dst_nbytes, z_src, z_src_nbytes); + + /* Check for various zlib errors */ + if(Z_BUF_ERROR == ret) { + HDfprintf(stderr, "overflow\n"); + goto error; + } else if(Z_MEM_ERROR == ret) { + HDfprintf(stderr, "deflate memory error\n"); + goto error; + } else if(Z_DATA_ERROR == ret) { + HDfprintf(stderr, "corrupted data\n"); + goto error; + } else if(Z_OK != ret) { + HDfprintf(stderr, "other deflate error\n"); + goto error; + } + + /* Check that the decompressed values match those read from H5Dread */ + for(k = 0; k < CHUNK_NX; k++) { + for(l = 0; l < CHUNK_NY; l++) { + if(direct_buf[k][l] != check_chunk[k][l]) { + HDprintf("\n 1. Read different values than written."); + HDprintf(" At index %d,%d\n", k, l); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]); + goto error; + } + } + } + } + } + + /* Close/release resources. */ + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + H5Pclose(dapl); + + if(outbuf) + HDfree(outbuf); + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + H5Pclose(dapl); + } H5E_END_TRY; + + if(outbuf) + HDfree(outbuf); + + return 1; +} /* test_direct_chunk_read_no_cache() */ +#endif /* H5_HAVE_FILTER_DEFLATE */ + +#ifdef H5_HAVE_FILTER_DEFLATE +static int +test_direct_chunk_read_cache (hid_t file, hbool_t flush) +{ + hid_t dataspace = -1, dataset = -1; + hid_t mem_space = -1; + hid_t cparms = -1, dxpl = -1; + hsize_t dims[2] = {NX, NY}; + hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims[2] = {CHUNK_NX, CHUNK_NY}; + herr_t status; /* status from H5 function calls */ + int ret; /* deflate return status */ + int data[NX][NY]; + int i, j, k, l, n; /* local index variables */ + + unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ + int check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */ + hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); + + Bytef *z_src = NULL; /* source buffer */ + uLongf z_src_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size); + Bytef *z_dst = (Bytef*)(direct_buf); + uLong z_dst_nbytes = (uLong)buf_size; + int aggression = 9; /* Compression aggression setting */ + void *outbuf = NULL; /* Pointer to new buffer */ + hsize_t read_buf_size = 0; + + hsize_t start[2]; /* Start of hyperslab */ + hsize_t stride[2]; /* Stride of hyperslab */ + hsize_t count[2]; /* Block count */ + hsize_t block[2]; /* Block sizes */ + + if(flush) { + TESTING("basic functionality of H5DOread_chunk (flush chunk cache)"); + } else { + TESTING("basic functionality of H5DOread_chunk (does not flush chunk cache)"); + } + + /* Create the data space with unlimited dimensions. */ + if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) + goto error; + if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0) + goto error; + + /* Modify dataset creation properties, i.e. enable chunking and compression */ + if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0) + goto error; + if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0) + goto error; + + /* Create a new dataset within the file using cparms creation properties. */ + if((dataset = H5Dcreate2(file, flush?DATASETNAME9:DATASETNAME10, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, + cparms, H5P_DEFAULT)) < 0) + goto error; + + /* Initialize the dataset */ + for(i = n = 0; i < NX; i++) + for(j = 0; j < NY; j++) + data[i][j] = n++; + + if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + + /* Write the data for the dataset. + * It should stay in the chunk cache. */ + if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + dxpl, data)) < 0) + goto error; + + if(flush) { + /* Flush the chunk cache to disk. Cache entry is not evicted. */ + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + goto error; + } + + /* Allocate output (compressed) buffer */ + outbuf = HDmalloc(z_src_nbytes); + z_src = (Bytef *)outbuf; + + /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + for(i=0; i<NX/CHUNK_NX; i++) { + for(j=0; j<NY/CHUNK_NY; j++) { + /* Select hyperslab for one chunk in the file */ + start[0] = (hsize_t)i * CHUNK_NX; start[1] = (hsize_t)j * CHUNK_NY; + stride[0] = 1; stride[1] = 1; + count[0] = 1; count[1] = 1; + block[0] = CHUNK_NX; block[1] = CHUNK_NY; + + /* Hyperslab selection equals single chunk */ + if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) + goto error; + + /* Read the chunk back */ + if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) + goto error; + + offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY; + + /* Query chunk storage size */ + if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0) + goto error; + if(read_buf_size == 0) + goto error; + + /* Read the compressed chunk back using the direct read function. */ + if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, outbuf)) < 0) + goto error; + + /* Check filter mask return value */ + if(filter_mask != 0) + goto error; + + /* Perform decompression from the source to the destination buffer */ + ret = uncompress(z_dst, &z_dst_nbytes, z_src, z_src_nbytes); + + /* Check for various zlib errors */ + if(Z_BUF_ERROR == ret) { + HDfprintf(stderr, "overflow\n"); + goto error; + } else if(Z_MEM_ERROR == ret) { + HDfprintf(stderr, "deflate memory error\n"); + goto error; + } else if(Z_DATA_ERROR == ret) { + HDfprintf(stderr, "corrupted data\n"); + goto error; + } else if(Z_OK != ret) { + HDfprintf(stderr, "other deflate error\n"); + goto error; + } + + /* Check that the decompressed values match those read from H5Dread */ + for(k = 0; k < CHUNK_NX; k++) { + for(l = 0; l < CHUNK_NY; l++) { + if(direct_buf[k][l] != check_chunk[k][l]) { + HDprintf("\n 1. Read different values than written."); + HDprintf(" At index %d,%d\n", k, l); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]); + goto error; + } + } + } + } + } + + /* Close/release resources. */ + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + + if(outbuf) + HDfree(outbuf); + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + } H5E_END_TRY; + + if(outbuf) + HDfree(outbuf); + + return 1; +} /* test_direct_chunk_read_cache() */ +#endif /* H5_HAVE_FILTER_DEFLATE */ /*------------------------------------------------------------------------- - * Function: Main function + * Function: test_read_unfiltered_dset * - * Purpose: Test direct chunk write function H5DOwrite_chunk + * Purpose: Test the basic functionality of H5DOread_chunk on a dataset + * without no filters applied. * - * Return: Success: 0 + * Return: Success: 0 + * Failure: 1 * - * Failure: 1 + * Programmer: Matthew Strong (GE Healthcare) + * 30 November 2016 * - * Programmer: Raymond Lu + *------------------------------------------------------------------------- + */ +static int +test_read_unfiltered_dset(hid_t file) +{ + hid_t dataspace = -1, dataset = -1; + hid_t mem_space = -1; + hid_t cparms = -1, dxpl = -1; + hsize_t dims[2] = {NX, NY}; + hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY}; + herr_t status; + int data[NX][NY]; + int i, j, k, l, n; + + unsigned filter_mask = 0; + int direct_buf[CHUNK_NX][CHUNK_NY]; + int check_chunk[CHUNK_NX][CHUNK_NY]; /* chunk read with H5Dread */ + hsize_t offset[2] = {0, 0}; + size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int); + hsize_t read_buf_size = 0; + + hsize_t start[2]; /* Start of hyperslab */ + hsize_t stride[2]; /* Stride of hyperslab */ + hsize_t count[2]; /* Block count */ + hsize_t block[2]; /* Block sizes */ + + TESTING("basic functionality of H5DOread_chunk on unfiltered datasets"); + + /* Create the data space with unlimited dimensions. */ + if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) + goto error; + if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0) + goto error; + + /* Modify dataset creation properties, i.e. enable chunking, no compression */ + if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0) + goto error; + + /* Create a new dataset within the file using cparms creation properties. */ + if((dataset = H5Dcreate2(file, DATASETNAME12, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, + cparms, H5P_DEFAULT)) < 0) + goto error; + + /* Initialize the dataset */ + for(i = n = 0; i < NX; i++) + for(j = 0; j < NY; j++) + data[i][j] = n++; + + if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + + /* Write the data for the dataset. + * It should stay in the chunk cache and will be evicted/flushed by + * the H5DOread_chunk function call. */ + if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + dxpl, data)) < 0) + goto error; + + if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0) + goto error; + + /* For each chunk in the dataset, compare the result of H5Dread and H5DOread_chunk. */ + for(i=0; i<NX/CHUNK_NX; i++) { + for(j=0; j<NY/CHUNK_NY; j++) { + /* Select hyperslab for one chunk in the file */ + start[0] = (hsize_t)i * CHUNK_NX; start[1] = (hsize_t)j * CHUNK_NY; + stride[0] = 1; stride[1] = 1; + count[0] = 1; count[1] = 1; + block[0] = CHUNK_NX; block[1] = CHUNK_NY; + + /* Hyperslab selection equals single chunk */ + if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0) + goto error; + + /* Read the chunk back */ + if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0) + goto error; + + /* Query chunk storage size */ + if((status = H5Dget_chunk_storage_size(dataset, offset, &read_buf_size)) < 0) + goto error; + + if(read_buf_size != buf_size ) + goto error; + + offset[0] = (hsize_t)i * CHUNK_NX; offset[1] = (hsize_t)j * CHUNK_NY; + /* Read the raw chunk back */ + HDmemset(&direct_buf, 0, sizeof(direct_buf)); + filter_mask = UINT_MAX; + if((status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, direct_buf)) < 0) + goto error; + + /* Check filter mask return value */ + if(filter_mask != 0) + goto error; + + /* Check that the decompressed values match those read from H5Dread */ + for(k = 0; k < CHUNK_NX; k++) { + for(l = 0; l < CHUNK_NY; l++) { + if(direct_buf[k][l] != check_chunk[k][l]) { + HDprintf("\n 1. Read different values than written."); + HDprintf(" At index %d,%d\n", k, l); + HDprintf(" direct_buf=%d, check_chunk=%d\n", direct_buf[k][l], check_chunk[k][l]); + goto error; + } + } + } + } + } + + /* Close/release resources. */ + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + } H5E_END_TRY; + + return 1; +} /* test_read_unfiltered_dset() */ + +/*------------------------------------------------------------------------- + * Function: test_read_unallocated_chunk + * + * Purpose: Tests the H5DOread_chunk and H5Dget_chunk_storage_size with valid + * offets to chunks that have not been written to the dataset and are + * not allocated in the chunk storage on disk. + * + * Return: Success: 0 + * Failure: 1 + * + * Programmer: Matthew Strong (GE Healthcare) + * 30 November 2016 + * + *------------------------------------------------------------------------- + */ +static int +test_read_unallocated_chunk (hid_t file) +{ + hid_t dataspace = -1, dataset = -1; + hid_t mem_space = -1; + hid_t cparms = -1, dxpl = -1; + hsize_t dims[2] = {NX, NY}; + hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims[2] = {CHUNK_NX, CHUNK_NY}; + hsize_t chunk_nbytes = CHUNK_NX*CHUNK_NY*sizeof(int); + hsize_t direct_chunk_nbytes = 0; /* size (bytes) of the on-disk chunk */ + herr_t status; /* status from H5 function calls */ + hsize_t i, j; /* local index variables */ + + unsigned filter_mask = 0; /* filter mask returned from H5DOread_chunk */ + int direct_buf[CHUNK_NX][CHUNK_NY]; /* chunk read with H5DOread and manually decompressed */ + hsize_t offset[2]; /* chunk offset used for H5DOread_chunk */ + + TESTING("H5DOread_chunk with unallocated chunks"); + + /* Create the data space with unlimited dimensions. */ + if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0) + goto error; + if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0) + goto error; + + /* Modify dataset creation properties, i.e. enable chunking, no compression */ + if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0) + goto error; + + /* Create a new dataset within the file using cparms creation properties. */ + if((dataset = H5Dcreate2(file, DATASETNAME11, H5T_NATIVE_INT, dataspace, H5P_DEFAULT, + cparms, H5P_DEFAULT)) < 0) + goto error; + + if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + + /* Write a single chunk to intialize the chunk storage */ + HDmemset(&chunk_dims, 0, sizeof(chunk_dims)); + offset[0] = 0; offset[1] = 0; + + if(H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, chunk_nbytes, &chunk_dims) < 0) + goto error; + + /* Attempt to read each chunk in the dataset. Chunks are not allocated, + * therefore we expect the result of H5DOread_chunk to fail. Chunk idx starts + * at 1, since one chunk was written to init the chunk storage. */ + for(i=1; i<NX/CHUNK_NX; i++) { + for(j=0; j<NY/CHUNK_NY; j++) { + + offset[0] = i * CHUNK_NX; + offset[1] = j * CHUNK_NY; + + /* Read a non-existant chunk using the direct read function. */ + H5E_BEGIN_TRY { + status = H5DOread_chunk(dataset, dxpl, offset, &filter_mask, &direct_buf); + } H5E_END_TRY; + + /* Check that the chunk read call does not succeed. */ + if(status != -1) + goto error; + + /* Query the size of the non-existant chunk */ + direct_chunk_nbytes = ULONG_MAX; + H5E_BEGIN_TRY { + status = H5Dget_chunk_storage_size(dataset, offset, &direct_chunk_nbytes); + } H5E_END_TRY; + + /* Check that the chunk storage size call does not succeed. */ + if(status != -1 ) + goto error; + if(direct_chunk_nbytes != 0 ) + goto error; + + } + } + + /* Close/release resources. */ + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + + PASSED(); + return 0; + +error: + H5E_BEGIN_TRY { + H5Dclose(dataset); + H5Sclose(mem_space); + H5Sclose(dataspace); + H5Pclose(cparms); + H5Pclose(dxpl); + } H5E_END_TRY; + + return 1; +} /* test_read_unallocated_chunk() */ + +/*------------------------------------------------------------------------- + * Function: Main function + * + * Purpose: Test direct chunk write function H5DOwrite_chunk + * + * Return: Success: 0 + * + * Failure: 1 + * + * Programmer: Raymond Lu * 30 November 2012 * *------------------------------------------------------------------------- @@ -1410,11 +1992,22 @@ int main( void ) #ifdef H5_HAVE_FILTER_DEFLATE nerrors += test_direct_chunk_write(file_id); #endif /* H5_HAVE_FILTER_DEFLATE */ + nerrors += test_direct_chunk_overwrite_data(file_id); nerrors += test_skip_compress_write1(file_id); nerrors += test_skip_compress_write2(file_id); nerrors += test_data_conv(file_id); nerrors += test_invalid_parameters(file_id); + + /* Test direct chunk read */ +#ifdef H5_HAVE_FILTER_DEFLATE + nerrors += test_direct_chunk_read_no_cache(file_id); + nerrors += test_direct_chunk_read_cache(file_id, TRUE); + nerrors += test_direct_chunk_read_cache(file_id, FALSE); +#endif /* H5_HAVE_FILTER_DEFLATE */ + nerrors += test_read_unfiltered_dset(file_id); + nerrors += test_read_unallocated_chunk(file_id); + if(H5Fclose(file_id) < 0) goto error; @@ -1422,8 +2015,8 @@ int main( void ) if (nerrors) goto error; - return 0; + return EXIT_SUCCESS; error: - return 1; + return EXIT_FAILURE; } diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in index 11fd7ef..6f5fc84 100644 --- a/hl/tools/Makefile.in +++ b/hl/tools/Makefile.in @@ -670,7 +670,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 # All subdirectories SUBDIRS = gif2h5 -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -678,10 +678,12 @@ SUBDIRS = gif2h5 LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1167,6 +1169,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1174,7 +1177,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in index 231cb08..ce2bc6c 100644 --- a/hl/tools/gif2h5/Makefile.in +++ b/hl/tools/gif2h5/Makefile.in @@ -695,7 +695,7 @@ h52gifgentst_SOURCES = h52gifgentst.c # library. LDADD = $(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -703,10 +703,12 @@ LDADD = $(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1237,6 +1239,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1244,7 +1247,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index afab87c..d30106f 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,4 +1,4 @@ -HDF5 version 1.8.19-snap2 currently under development +HDF5 version 1.8.19-snap3 currently under development ================================================================================ INTRODUCTION diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index ab2cb8f..6e5cb17 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -13,53 +13,53 @@ * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -/* Programmer: Quincey Koziol <koziol@hdfgroup.org> - * Thursday, April 24, 2008 - * - * Purpose: Abstract indexed (chunked) I/O functions. The logical - * multi-dimensional data space is regularly partitioned into - * same-sized "chunks", the first of which is aligned with the - * logical origin. The chunks are indexed by different methods, - * that map a chunk index to disk address. Each chunk can be +/* Programmer: Quincey Koziol <koziol@hdfgroup.org> + * Thursday, April 24, 2008 + * + * Purpose: Abstract indexed (chunked) I/O functions. The logical + * multi-dimensional data space is regularly partitioned into + * same-sized "chunks", the first of which is aligned with the + * logical origin. The chunks are indexed by different methods, + * that map a chunk index to disk address. Each chunk can be * compressed independently and the chunks may move around in the * file as their storage requirements change. * - * Cache: Disk I/O is performed in units of chunks and H5MF_alloc() - * contains code to optionally align chunks on disk block - * boundaries for performance. - * - * The chunk cache is an extendible hash indexed by a function - * of storage B-tree address and chunk N-dimensional offset - * within the dataset. Collisions are not resolved -- one of - * the two chunks competing for the hash slot must be preempted - * from the cache. All entries in the hash also participate in - * a doubly-linked list and entries are penalized by moving them - * toward the front of the list. When a new chunk is about to - * be added to the cache the heap is pruned by preempting - * entries near the front of the list to make room for the new - * entry which is added to the end of the list. + * Cache: Disk I/O is performed in units of chunks and H5MF_alloc() + * contains code to optionally align chunks on disk block + * boundaries for performance. + * + * The chunk cache is an extendible hash indexed by a function + * of storage B-tree address and chunk N-dimensional offset + * within the dataset. Collisions are not resolved -- one of + * the two chunks competing for the hash slot must be preempted + * from the cache. All entries in the hash also participate in + * a doubly-linked list and entries are penalized by moving them + * toward the front of the list. When a new chunk is about to + * be added to the cache the heap is pruned by preempting + * entries near the front of the list to make room for the new + * entry which is added to the end of the list. */ /****************/ /* Module Setup */ /****************/ -#define H5D_PACKAGE /*suppress error about including H5Dpkg */ +#define H5D_PACKAGE /*suppress error about including H5Dpkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ +#include "H5private.h" /* Generic Functions */ #ifdef H5_HAVE_PARALLEL -#include "H5ACprivate.h" /* Metadata cache */ +#include "H5ACprivate.h" /* Metadata cache */ #endif /* H5_HAVE_PARALLEL */ -#include "H5Dpkg.h" /* Dataset functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5FLprivate.h" /* Free Lists */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5VMprivate.h" /* Vector and array functions */ +#include "H5Dpkg.h" /* Dataset functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5FLprivate.h" /* Free Lists */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5VMprivate.h" /* Vector and array functions */ /****************/ @@ -73,26 +73,26 @@ /* * Feature: If this constant is defined then every cache preemption and load - * causes a character to be printed on the standard error stream: + * causes a character to be printed on the standard error stream: * * `.': Entry was preempted because it has been completely read or - * completely written but not partially read and not partially - * written. This is often a good reason for preemption because such - * a chunk will be unlikely to be referenced in the near future. + * completely written but not partially read and not partially + * written. This is often a good reason for preemption because such + * a chunk will be unlikely to be referenced in the near future. * * `:': Entry was preempted because it hasn't been used recently. * * `#': Entry was preempted because another chunk collided with it. This - * is usually a relatively bad thing. If there are too many of - * these then the number of entries in the cache can be increased. + * is usually a relatively bad thing. If there are too many of + * these then the number of entries in the cache can be increased. * * c: Entry was preempted because the file is closing. * - * w: A chunk read operation was eliminated because the library is - * about to write new values to the entire chunk. This is a good - * thing, especially on files where the chunk size is the same as - * the disk block size, chunks are aligned on disk block boundaries, - * and the operating system can also eliminate a read operation. + * w: A chunk read operation was eliminated because the library is + * about to write new values to the entire chunk. This is a good + * thing, especially on files where the chunk size is the same as + * the disk block size, chunks are aligned on disk block boundaries, + * and the operating system can also eliminate a read operation. */ /*#define H5D_CHUNK_DEBUG */ @@ -107,7 +107,7 @@ typedef struct H5D_chunk_it_ud1_t { H5D_chunk_common_ud_t common; /* Common info for B-tree user data (must be first) */ const H5D_chk_idx_info_t *idx_info; /* Chunked index info */ const H5D_io_info_t *io_info; /* I/O info for dataset operation */ - const hsize_t *space_dim; /* New dataset dimensions */ + const hsize_t *space_dim; /* New dataset dimensions */ const hbool_t *shrunk_dim; /* Dimensions which have been shrunk */ H5S_t *chunk_space; /* Dataspace for a chunk */ uint32_t elmts_per_chunk;/* Elements in chunk */ @@ -156,7 +156,7 @@ typedef struct H5D_chunk_it_ud3_t { /* Callback info for iteration to dump index */ typedef struct H5D_chunk_it_ud4_t { - FILE *stream; /* Output stream */ + FILE *stream; /* Output stream */ hbool_t header_displayed; /* Node's header is displayed? */ unsigned ndims; /* Number of dimensions for chunk/dataset */ } H5D_chunk_it_ud4_t; @@ -304,13 +304,13 @@ H5FL_BLK_DEFINE_STATIC(chunk); /*------------------------------------------------------------------------- - * Function: H5D__chunk_direct_write + * Function: H5D__chunk_direct_write * - * Purpose: Internal routine to write a chunk directly into the file. + * Purpose: Internal routine to write a chunk directly into the file. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu + * Programmer: Raymond Lu * 30 July 2012 * *------------------------------------------------------------------------- @@ -324,7 +324,7 @@ H5D__chunk_direct_write(const H5D_t *dset, hid_t dxpl_id, uint32_t filters, hsiz hsize_t chunk_idx; /* Index of chunk cache entry */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ - const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ + const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ unsigned space_ndims; /* Dataset's space rank */ hsize_t space_dim[H5O_LAYOUT_NDIMS]; /* Dataset's dataspace dimensions */ herr_t ret_value = SUCCEED; /* Return value */ @@ -431,6 +431,8 @@ H5D__chunk_direct_read(const H5D_t *dset, hid_t dxpl_id, hsize_t *offset, HDassert(filters); HDassert(buf); + *filters = 0; + /* Retrieve the dataset dimensions */ space_ndims = dset->shared->layout.u.chunk.ndims - 1; @@ -460,31 +462,31 @@ H5D__chunk_direct_read(const H5D_t *dset, hid_t dxpl_id, hsize_t *offset, /* Check if the requested chunk exists in the chunk cache */ if(UINT_MAX != udata.idx_hint) { H5D_rdcc_ent_t *ent = rdcc->slot[udata.idx_hint]; + hbool_t flush; /* Sanity checks */ HDassert(udata.idx_hint < rdcc->nslots); HDassert(rdcc->slot[udata.idx_hint]); - /* If the cached chunk is dirty, it must be flushed to get accurate size */ - if( ent->dirty == TRUE ) { - /* Fill the DXPL cache values for later use */ - if(H5D__get_dxpl_cache(dxpl_id, &dxpl_cache) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache") + flush = (ent->dirty == TRUE) ? TRUE : FALSE; - /* Flush the chunk to disk and clear the cache entry */ - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[udata.idx_hint], TRUE) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") + /* Fill the DXPL cache values for later use */ + if(H5D__get_dxpl_cache(dxpl_id, &dxpl_cache) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache") - /* Reset fields about the chunk we are looking for */ - udata.nbytes = 0; - udata.filter_mask = 0; - udata.addr = HADDR_UNDEF; - udata.idx_hint = UINT_MAX; + /* Flush the chunk to disk and clear the cache entry */ + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[udata.idx_hint], flush) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") - /* Get the new file address / chunk size after flushing */ - if(H5D__chunk_lookup(dset, dxpl_id, chunk_offset, chunk_idx, &udata) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error looking up chunk address") - } + /* Reset fields about the chunk we are looking for */ + udata.nbytes = 0; + udata.filter_mask = 0; + udata.addr = HADDR_UNDEF; + udata.idx_hint = UINT_MAX; + + /* Get the new file address / chunk size after flushing */ + if(H5D__chunk_lookup(dset, dxpl_id, chunk_offset, chunk_idx, &udata) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error looking up chunk address") } /* Make sure the address of the chunk is returned. */ @@ -494,7 +496,7 @@ H5D__chunk_direct_read(const H5D_t *dset, hid_t dxpl_id, hsize_t *offset, /* Read the chunk data into the supplied buffer */ if(H5F_block_read(dset->oloc.file, H5FD_MEM_DRAW, udata.addr, udata.nbytes, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "unable to read raw data chunk") - + /* Return the filter mask */ *filters = udata.filter_mask; @@ -526,6 +528,7 @@ H5D__get_chunk_storage_size(H5D_t *dset, hid_t dxpl_id, const hsize_t *offset, h hsize_t chunk_idx; /* Index of chunk cache entry */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ + hbool_t flush; /* Flush cache or not */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -535,13 +538,13 @@ H5D__get_chunk_storage_size(H5D_t *dset, hid_t dxpl_id, const hsize_t *offset, h HDassert(offset); HDassert(storage_size); + *storage_size = 0; + /* Retrieve the dataset dimensions */ space_ndims = dset->shared->layout.u.chunk.ndims - 1; - - if(H5D__chunk_is_space_alloc(&(layout->storage)) == FALSE) { - *storage_size = 0; + + if(H5D__chunk_is_space_alloc(&(layout->storage)) == FALSE) HGOTO_DONE(SUCCEED) - } /* Initialize the chunk offset */ HDmemcpy(chunk_offset, offset, (space_ndims * sizeof(chunk_offset[0]))); @@ -569,30 +572,30 @@ H5D__get_chunk_storage_size(H5D_t *dset, hid_t dxpl_id, const hsize_t *offset, h if( dset->shared->dcpl_cache.pline.nused > 0 ) { /* Check if the requested chunk exists in the chunk cache */ if(UINT_MAX != udata.idx_hint) { + H5D_rdcc_ent_t *ent = rdcc->slot[udata.idx_hint]; + /* Sanity checks */ HDassert(udata.idx_hint < rdcc->nslots); HDassert(rdcc->slot[udata.idx_hint]); - H5D_rdcc_ent_t *ent = rdcc->slot[udata.idx_hint]; - /* If the cached chunk is dirty, it must be flushed to get accurate size */ - if( ent->dirty == TRUE ) { - /* Fill the DXPL cache values for later use */ - if(H5D__get_dxpl_cache(dxpl_id, &dxpl_cache) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache") + flush = (ent->dirty == TRUE) ? TRUE : FALSE; + + /* Fill the DXPL cache values for later use */ + if(H5D__get_dxpl_cache(dxpl_id, &dxpl_cache) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't fill dxpl cache") - /* Flush the chunk to disk and clear the cache entry */ - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[udata.idx_hint], TRUE) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") + /* Flush the chunk to disk and clear the cache entry */ + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, rdcc->slot[udata.idx_hint], flush) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTREMOVE, FAIL, "unable to evict chunk") - /* Reset fields about the chunk we are looking for */ - udata.nbytes = 0; - udata.addr = HADDR_UNDEF; - udata.idx_hint = UINT_MAX; + /* Reset fields about the chunk we are looking for */ + udata.nbytes = 0; + udata.addr = HADDR_UNDEF; + udata.idx_hint = UINT_MAX; - /* Get the new file address / chunk size after flushing */ - if(H5D__chunk_lookup(dset, dxpl_id, chunk_offset, chunk_idx, &udata) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error looking up chunk address") - } + /* Get the new file address / chunk size after flushing */ + if(H5D__chunk_lookup(dset, dxpl_id, chunk_offset, chunk_idx, &udata) < 0) + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "error looking up chunk address") } /* Make sure the address of the chunk is returned. */ @@ -613,13 +616,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_set_info_real + * Function: H5D__chunk_set_info_real * - * Purpose: Internal routine to set the information about chunks for a dataset + * Purpose: Internal routine to set the information about chunks for a dataset * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 30, 2009 * *------------------------------------------------------------------------- @@ -640,10 +643,10 @@ H5D__chunk_set_info_real(H5O_layout_chunk_t *layout, unsigned ndims, const hsize /* Compute the # of chunks in dataset dimensions */ for(u = 0, layout->nchunks = 1; u < ndims; u++) { /* Round up to the next integer # of chunks, to accomodate partial chunks */ - layout->chunks[u] = ((curr_dims[u] + layout->dim[u]) - 1) / layout->dim[u]; + layout->chunks[u] = ((curr_dims[u] + layout->dim[u]) - 1) / layout->dim[u]; /* Accumulate the # of chunks */ - layout->nchunks *= layout->chunks[u]; + layout->nchunks *= layout->chunks[u]; } /* end for */ /* Get the "down" sizes for each dimension */ @@ -656,13 +659,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_set_info + * Function: H5D__chunk_set_info * - * Purpose: Sets the information about chunks for a dataset + * Purpose: Sets the information about chunks for a dataset * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, June 30, 2009 * *------------------------------------------------------------------------- @@ -682,12 +685,12 @@ H5D__chunk_set_info(const H5D_t *dset) /* Get the dim info for dataset */ if((sndims = H5S_get_simple_extent_dims(dset->shared->space, curr_dims, NULL)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataspace dimensions") H5_CHECKED_ASSIGN(ndims, unsigned, sndims, int); /* Set the base layout information */ if(H5D__chunk_set_info_real(&dset->shared->layout.u.chunk, ndims, curr_dims) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set layout's chunk info") + HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set layout's chunk info") /* Call the index's "resize" callback */ if(dset->shared->layout.storage.u.chunk.ops->resize && (dset->shared->layout.storage.u.chunk.ops->resize)(&dset->shared->layout.u.chunk) < 0) @@ -699,13 +702,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_construct + * Function: H5D__chunk_construct * - * Purpose: Constructs new chunked layout information for dataset + * Purpose: Constructs new chunked layout information for dataset * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, May 22, 2008 * *------------------------------------------------------------------------- @@ -790,14 +793,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_init + * Function: H5D__chunk_init * - * Purpose: Initialize the raw data chunk cache for a dataset. This is - * called when the dataset is initialized. + * Purpose: Initialize the raw data chunk cache for a dataset. This is + * called when the dataset is initialized. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Monday, May 18, 1998 * *------------------------------------------------------------------------- @@ -806,7 +809,7 @@ herr_t H5D__chunk_init(H5F_t *f, hid_t dxpl_id, const H5D_t *dset, hid_t dapl_id) { H5D_chk_idx_info_t idx_info; /* Chunked index info */ - H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Convenience pointer to dataset's chunk cache */ + H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Convenience pointer to dataset's chunk cache */ H5P_genplist_t *dapl; /* Data access property list object pointer */ herr_t ret_value = SUCCEED; /* Return value */ @@ -856,7 +859,7 @@ H5D__chunk_init(H5F_t *f, hid_t dxpl_id, const H5D_t *dset, hid_t dapl_id) /* Allocate any indexing structures */ if(dset->shared->layout.storage.u.chunk.ops->init && (dset->shared->layout.storage.u.chunk.ops->init)(&idx_info, dset->shared->space, dset->oloc.addr) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize indexing information") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize indexing information") /* Set the number of chunks in dataset, etc. */ if(H5D__chunk_set_info(dset) < 0) @@ -868,13 +871,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_is_space_alloc + * Function: H5D__chunk_is_space_alloc * - * Purpose: Query if space is allocated for layout + * Purpose: Query if space is allocated for layout * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 15, 2009 * *------------------------------------------------------------------------- @@ -897,13 +900,13 @@ H5D__chunk_is_space_alloc(const H5O_storage_t *storage) /*------------------------------------------------------------------------- - * Function: H5D__chunk_io_init + * Function: H5D__chunk_io_init * - * Purpose: Performs initialization before any sort of I/O on the raw data + * Purpose: Performs initialization before any sort of I/O on the raw data * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, March 20, 2008 * *------------------------------------------------------------------------- @@ -926,7 +929,7 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf H5S_sel_type fsel_type; /* Selection type on disk */ char bogus; /* "bogus" buffer to pass to selection iterator */ unsigned u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1136,7 +1139,7 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf HGOTO_ERROR(H5E_DATATYPE, H5E_BADSIZE, FAIL, "datatype size invalid") if(H5S_select_iter_init(&(fm->mem_iter), mem_space, elmt_size) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator") - iter_init = TRUE; /* Selection iteration info has been initialized */ + iter_init = TRUE; /* Selection iteration info has been initialized */ iter_op.op_type = H5S_SEL_ITER_OP_LIB; iter_op.u.lib_op = H5D__chunk_mem_cb; @@ -1198,15 +1201,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_alloc + * Function: H5D__chunk_alloc * - * Purpose: Allocate space for a chunk in memory. This routine allocates + * Purpose: Allocate space for a chunk in memory. This routine allocates * memory space for non-filtered chunks from a block free list * and uses malloc()/free() for filtered chunks. * - * Return: Pointer to memory for chunk on success/NULL on failure + * Return: Pointer to memory for chunk on success/NULL on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * April 22, 2004 * *------------------------------------------------------------------------- @@ -1214,7 +1217,7 @@ done: static void * H5D__chunk_alloc(size_t size, const H5O_pline_t *pline) { - void *ret_value = NULL; /* Return value */ + void *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC_NOERR @@ -1231,15 +1234,15 @@ H5D__chunk_alloc(size_t size, const H5O_pline_t *pline) /*------------------------------------------------------------------------- - * Function: H5D__chunk_xfree + * Function: H5D__chunk_xfree * - * Purpose: Free space for a chunk in memory. This routine allocates + * Purpose: Free space for a chunk in memory. This routine allocates * memory space for non-filtered chunks from a block free list * and uses malloc()/free() for filtered chunks. * - * Return: NULL (never fails) + * Return: NULL (never fails) * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * April 22, 2004 * *------------------------------------------------------------------------- @@ -1339,14 +1342,14 @@ H5D__free_chunk_info(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSED * /*------------------------------------------------------------------------- - * Function: H5D__create_chunk_map_single + * Function: H5D__create_chunk_map_single * - * Purpose: Create chunk selections when appending a single record + * Purpose: Create chunk selections when appending a single record * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Tuesday, November 20, 2007 + * Programmer: Quincey Koziol + * Tuesday, November 20, 2007 * *------------------------------------------------------------------------- */ @@ -1361,7 +1364,7 @@ H5D__create_chunk_map_single(H5D_chunk_map_t *fm, const H5D_io_info_t hsize_t sel_start[H5O_LAYOUT_NDIMS]; /* Offset of low bound of file selection */ hsize_t sel_end[H5O_LAYOUT_NDIMS]; /* Offset of high bound of file selection */ unsigned u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1420,14 +1423,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__create_chunk_file_map_hyper + * Function: H5D__create_chunk_file_map_hyper * - * Purpose: Create all chunk selections in file. + * Purpose: Create all chunk selections in file. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, May 29, 2003 + * Programmer: Quincey Koziol + * Thursday, May 29, 2003 * *------------------------------------------------------------------------- */ @@ -1447,7 +1450,7 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t hsize_t chunk_index; /* Index of chunk */ int curr_dim; /* Current dimension to increment */ unsigned u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1597,16 +1600,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__create_chunk_mem_map_hyper + * Function: H5D__create_chunk_mem_map_hyper * - * Purpose: Create all chunk selections in memory by copying the file + * Purpose: Create all chunk selections in memory by copying the file * chunk selections and adjusting their offsets to be correct * for the memory. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Thursday, May 29, 2003 + * Programmer: Quincey Koziol + * Thursday, May 29, 2003 * * Assumptions: That the file and memory selections are the same shape. * @@ -1623,7 +1626,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) hssize_t adjust[H5O_LAYOUT_NDIMS]; /* Adjustment to make to all file chunks */ hssize_t chunk_adjust[H5O_LAYOUT_NDIMS]; /* Adjustment to make to a particular chunk */ unsigned u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1709,15 +1712,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_file_cb + * Function: H5D__chunk_file_cb * - * Purpose: Callback routine for file selection iterator. Used when + * Purpose: Callback routine for file selection iterator. Used when * creating selections in file for each point selected. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Wednesday, July 23, 2003 + * Programmer: Quincey Koziol + * Wednesday, July 23, 2003 * *------------------------------------------------------------------------- */ @@ -1730,7 +1733,7 @@ H5D__chunk_file_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, hsize_t coords_in_chunk[H5O_LAYOUT_NDIMS]; /* Coordinates of element in chunk */ hsize_t chunk_index; /* Chunk index */ unsigned u; /* Local index variable */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1828,15 +1831,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_mem_cb + * Function: H5D__chunk_mem_cb * - * Purpose: Callback routine for file selection iterator. Used when + * Purpose: Callback routine for file selection iterator. Used when * creating selections in memory for each chunk. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu - * Thursday, April 10, 2003 + * Programmer: Raymond Lu + * Thursday, April 10, 2003 * *------------------------------------------------------------------------- */ @@ -1848,7 +1851,7 @@ H5D__chunk_mem_cb(void H5_ATTR_UNUSED *elem, const H5T_t H5_ATTR_UNUSED *type, u H5D_chunk_info_t *chunk_info; /* Chunk information for current chunk */ hsize_t coords_in_mem[H5O_LAYOUT_NDIMS]; /* Coordinates of element in memory */ hsize_t chunk_index; /* Chunk index */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -1907,15 +1910,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_cacheable + * Function: H5D__chunk_cacheable * - * Purpose: A small internal function to if it's possible to load the + * Purpose: A small internal function to if it's possible to load the * chunk into cache. * - * Return: TRUE or FALSE + * Return: TRUE or FALSE * - * Programmer: Raymond Lu - * 17 July 2007 + * Programmer: Raymond Lu + * 17 July 2007 * *------------------------------------------------------------------------- */ @@ -1982,14 +1985,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_read + * Function: H5D__chunk_read * - * Purpose: Read from a chunked dataset. + * Purpose: Read from a chunked dataset. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu - * Thursday, April 10, 2003 + * Programmer: Raymond Lu + * Thursday, April 10, 2003 * *------------------------------------------------------------------------- */ @@ -2007,7 +2010,7 @@ H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hbool_t cpt_dirty; /* Temporary placeholder for compact storage "dirty" flag */ uint32_t src_accessed_bytes = 0; /* Total accessed size in a chunk */ hbool_t skip_missing_chunks = FALSE; /* Whether to skip missing chunks */ - herr_t ret_value = SUCCEED; /*return value */ + herr_t ret_value = SUCCEED; /*return value */ FUNC_ENTER_STATIC @@ -2061,7 +2064,7 @@ H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5D_chunk_info_t *chunk_info; /* Chunk information */ H5D_io_info_t *chk_io_info; /* Pointer to I/O info object for this chunk */ void *chunk; /* Pointer to locked chunk buffer */ - H5D_chunk_ud_t udata; /* B-tree pass-through */ + H5D_chunk_ud_t udata; /* B-tree pass-through */ htri_t cacheable; /* Whether the chunk is cacheable */ /* Get the actual chunk information from the skip list node */ @@ -2134,14 +2137,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_write + * Function: H5D__chunk_write * - * Purpose: Writes to a chunked dataset. + * Purpose: Writes to a chunked dataset. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu - * Thursday, April 10, 2003 + * Programmer: Raymond Lu + * Thursday, April 10, 2003 * *------------------------------------------------------------------------- */ @@ -2157,7 +2160,7 @@ H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5D_storage_t cpt_store; /* Chunk storage information as compact dataset */ hbool_t cpt_dirty; /* Temporary placeholder for compact storage "dirty" flag */ uint32_t dst_accessed_bytes = 0; /* Total accessed size in a chunk */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2189,7 +2192,7 @@ H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, H5D_chunk_info_t *chunk_info; /* Chunk information */ H5D_io_info_t *chk_io_info; /* Pointer to I/O info object for this chunk */ void *chunk; /* Pointer to locked chunk buffer */ - H5D_chunk_ud_t udata; /* Index pass-through */ + H5D_chunk_ud_t udata; /* Index pass-through */ htri_t cacheable; /* Whether the chunk is cacheable */ /* Get the actual chunk information from the skip list node */ @@ -2283,14 +2286,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_flush + * Function: H5D__chunk_flush * - * Purpose: Writes all dirty chunks to disk and optionally preempts them - * from the cache. + * Purpose: Writes all dirty chunks to disk and optionally preempts them + * from the cache. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -2301,8 +2304,8 @@ H5D__chunk_flush(H5D_t *dset, hid_t dxpl_id) H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); - H5D_rdcc_ent_t *ent, *next; - unsigned nerrors = 0; /* Count of any errors encountered when flushing chunks */ + H5D_rdcc_ent_t *ent, *next; + unsigned nerrors = 0; /* Count of any errors encountered when flushing chunks */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2320,12 +2323,12 @@ H5D__chunk_flush(H5D_t *dset, hid_t dxpl_id) /* Loop over all entries in the chunk cache */ for(ent = rdcc->head; ent; ent = next) { - next = ent->next; + next = ent->next; if(H5D__chunk_flush_entry(dset, dxpl_id, dxpl_cache, ent, FALSE) < 0) nerrors++; } /* end for */ if(nerrors) - HGOTO_ERROR(H5E_DATASET, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks") + HGOTO_ERROR(H5E_DATASET, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2333,21 +2336,21 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_io_term + * Function: H5D__chunk_io_term * - * Purpose: Destroy I/O operation information. + * Purpose: Destroy I/O operation information. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * Saturday, May 17, 2003 + * Programmer: Quincey Koziol + * Saturday, May 17, 2003 * *------------------------------------------------------------------------- */ static herr_t H5D__chunk_io_term(const H5D_chunk_map_t *fm) { - herr_t ret_value = SUCCEED; /*return value */ + herr_t ret_value = SUCCEED; /*return value */ FUNC_ENTER_STATIC @@ -2384,13 +2387,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D_chunk_idx_reset + * Function: H5D_chunk_idx_reset * - * Purpose: Reset index information + * Purpose: Reset index information * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, January 15, 2009 * *------------------------------------------------------------------------- @@ -2408,7 +2411,7 @@ H5D_chunk_idx_reset(H5O_storage_chunk_t *storage, hbool_t reset_addr) /* Reset index structures */ if((storage->ops->reset)(storage, reset_addr) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to reset chunk index info") + HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to reset chunk index info") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2416,13 +2419,13 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_cinfo_cache_reset + * Function: H5D__chunk_cinfo_cache_reset * - * Purpose: Reset the cached chunk info + * Purpose: Reset the cached chunk info * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 27, 2007 * *------------------------------------------------------------------------- @@ -2443,13 +2446,13 @@ H5D__chunk_cinfo_cache_reset(H5D_chunk_cached_t *last) /*------------------------------------------------------------------------- - * Function: H5D__chunk_cinfo_cache_update + * Function: H5D__chunk_cinfo_cache_update * - * Purpose: Update the cached chunk info + * Purpose: Update the cached chunk info * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 27, 2007 * *------------------------------------------------------------------------- @@ -2480,13 +2483,13 @@ H5D__chunk_cinfo_cache_update(H5D_chunk_cached_t *last, const H5D_chunk_ud_t *ud /*------------------------------------------------------------------------- - * Function: H5D__chunk_cinfo_cache_found + * Function: H5D__chunk_cinfo_cache_found * - * Purpose: Look for chunk info in cache + * Purpose: Look for chunk info in cache * - * Return: TRUE/FALSE/FAIL + * Return: TRUE/FALSE/FAIL * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * November 27, 2007 * *------------------------------------------------------------------------- @@ -2529,17 +2532,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_create + * Function: H5D__chunk_create * - * Purpose: Creates a new chunked storage index and initializes the - * layout information with information about the storage. The - * layout info should be immediately written to the object header. + * Purpose: Creates a new chunked storage index and initializes the + * layout information with information about the storage. The + * layout info should be immediately written to the object header. * - * Return: Non-negative on success (with the layout information initialized - * and ready to write to an object header). Negative on failure. + * Return: Non-negative on success (with the layout information initialized + * and ready to write to an object header). Negative on failure. * - * Programmer: Quincey Koziol - * Thursday, May 22, 2008 + * Programmer: Quincey Koziol + * Thursday, May 22, 2008 * *------------------------------------------------------------------------- */ @@ -2560,7 +2563,7 @@ H5D__chunk_create(const H5D_t *dset /*in,out*/, hid_t dxpl_id) unsigned u; /* Local index variable */ for(u = 0; u < dset->shared->layout.u.chunk.ndims; u++) - HDassert(dset->shared->layout.u.chunk.dim[u] > 0); + HDassert(dset->shared->layout.u.chunk.dim[u] > 0); } #endif @@ -2573,7 +2576,7 @@ H5D__chunk_create(const H5D_t *dset /*in,out*/, hid_t dxpl_id) /* Create the index for the chunks */ if((dset->shared->layout.storage.u.chunk.ops->create)(&idx_info) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create chunk index") + HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't create chunk index") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2581,14 +2584,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_lookup + * Function: H5D__chunk_lookup * - * Purpose: Loops up a chunk in cache and on disk, and retrieves + * Purpose: Loops up a chunk in cache and on disk, and retrieves * information about that chunk. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Albert Cheng + * Programmer: Albert Cheng * June 27, 1998 * *------------------------------------------------------------------------- @@ -2600,7 +2603,7 @@ H5D__chunk_lookup(const H5D_t *dset, hid_t dxpl_id, const hsize_t *chunk_offset, H5D_rdcc_ent_t *ent = NULL; /* Cache entry */ hbool_t found = FALSE; /* In cache? */ unsigned u; /* Counter */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -2667,16 +2670,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_flush_entry + * Function: H5D__chunk_flush_entry * - * Purpose: Writes a chunk to disk. If RESET is non-zero then the - * entry is cleared -- it's slightly faster to flush a chunk if - * the RESET flag is turned on because it results in one fewer - * memory copy. + * Purpose: Writes a chunk to disk. If RESET is non-zero then the + * entry is cleared -- it's slightly faster to flush a chunk if + * the RESET flag is turned on because it results in one fewer + * memory copy. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -2685,9 +2688,9 @@ static herr_t H5D__chunk_flush_entry(const H5D_t *dset, hid_t dxpl_id, const H5D_dxpl_cache_t *dxpl_cache, H5D_rdcc_ent_t *ent, hbool_t reset) { - void *buf = NULL; /* Temporary buffer */ - hbool_t point_of_no_return = FALSE; - herr_t ret_value = SUCCEED; /* Return value */ + void *buf = NULL; /* Temporary buffer */ + hbool_t point_of_no_return = FALSE; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2699,7 +2702,7 @@ H5D__chunk_flush_entry(const H5D_t *dset, hid_t dxpl_id, const H5D_dxpl_cache_t buf = ent->chunk; if(ent->dirty && !ent->deleted) { - H5D_chunk_ud_t udata; /* pass through B-tree */ + H5D_chunk_ud_t udata; /* pass through B-tree */ hbool_t must_insert = FALSE; /* Whether the chunk must go through the "insert" method */ /* Set up user data for index callbacks */ @@ -2713,7 +2716,7 @@ H5D__chunk_flush_entry(const H5D_t *dset, hid_t dxpl_id, const H5D_dxpl_cache_t /* Should the chunk be filtered before writing it to disk? */ if(dset->shared->dcpl_cache.pline.nused) { - size_t alloc = udata.nbytes; /* Bytes allocated for BUF */ + size_t alloc = udata.nbytes; /* Bytes allocated for BUF */ size_t nbytes; /* Chunk size (in bytes) */ if(!reset) { @@ -2887,15 +2890,15 @@ H5D__chunk_cache_evict(const H5D_t *dset, hid_t dxpl_id, const H5D_dxpl_cache_t /*------------------------------------------------------------------------- - * Function: H5D__chunk_cache_prune + * Function: H5D__chunk_cache_prune * - * Purpose: Prune the cache by preempting some things until the cache has - * room for something which is SIZE bytes. Only unlocked - * entries are considered for preemption. + * Purpose: Prune the cache by preempting some things until the cache has + * room for something which is SIZE bytes. Only unlocked + * entries are considered for preemption. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -2904,13 +2907,13 @@ static herr_t H5D__chunk_cache_prune(const H5D_t *dset, hid_t dxpl_id, const H5D_dxpl_cache_t *dxpl_cache, size_t size) { - const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); - size_t total = rdcc->nbytes_max; - const int nmeth = 2; /*number of methods */ - int w[1]; /*weighting as an interval */ - H5D_rdcc_ent_t *p[2], *cur; /*list pointers */ - H5D_rdcc_ent_t *n[2]; /*list next pointers */ - int nerrors = 0; /* Accumulated error count during preemptions */ + const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); + size_t total = rdcc->nbytes_max; + const int nmeth = 2; /*number of methods */ + int w[1]; /*weighting as an interval */ + H5D_rdcc_ent_t *p[2], *cur; /*list pointers */ + H5D_rdcc_ent_t *n[2]; /*list next pointers */ + int nerrors = 0; /* Accumulated error count during preemptions */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2932,62 +2935,62 @@ H5D__chunk_cache_prune(const H5D_t *dset, hid_t dxpl_id, while((p[0] || p[1]) && (rdcc->nbytes_used + size) > total) { int i; /* Local index variable */ - /* Introduce new pointers */ - for(i = 0; i < nmeth - 1; i++) + /* Introduce new pointers */ + for(i = 0; i < nmeth - 1; i++) if(0 == w[i]) p[i + 1] = rdcc->head; - /* Compute next value for each pointer */ - for(i = 0; i < nmeth; i++) + /* Compute next value for each pointer */ + for(i = 0; i < nmeth; i++) n[i] = p[i] ? p[i]->next : NULL; - /* Give each method a chance */ - for(i = 0; i < nmeth && (rdcc->nbytes_used + size) > total; i++) { - if(0 == i && p[0] && !p[0]->locked && + /* Give each method a chance */ + for(i = 0; i < nmeth && (rdcc->nbytes_used + size) > total; i++) { + if(0 == i && p[0] && !p[0]->locked && ((0 == p[0]->rd_count && 0 == p[0]->wr_count) || (0 == p[0]->rd_count && dset->shared->layout.u.chunk.size == p[0]->wr_count) || (dset->shared->layout.u.chunk.size == p[0]->rd_count && 0 == p[0]->wr_count))) { - /* - * Method 0: Preempt entries that have been completely written - * and/or completely read but not entries that are partially - * written or partially read. - */ - cur = p[0]; - } else if(1 == i && p[1] && !p[1]->locked) { - /* - * Method 1: Preempt the entry without regard to - * considerations other than being locked. This is the last - * resort preemption. - */ - cur = p[1]; - } else { - /* Nothing to preempt at this point */ - cur = NULL; - } - - if(cur) { + /* + * Method 0: Preempt entries that have been completely written + * and/or completely read but not entries that are partially + * written or partially read. + */ + cur = p[0]; + } else if(1 == i && p[1] && !p[1]->locked) { + /* + * Method 1: Preempt the entry without regard to + * considerations other than being locked. This is the last + * resort preemption. + */ + cur = p[1]; + } else { + /* Nothing to preempt at this point */ + cur = NULL; + } + + if(cur) { int j; /* Local index variable */ - for(j = 0; j < nmeth; j++) { - if(p[j] == cur) + for(j = 0; j < nmeth; j++) { + if(p[j] == cur) p[j] = NULL; - if(n[j] == cur) + if(n[j] == cur) n[j] = cur->next; - } /* end for */ - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, cur, TRUE) < 0) + } /* end for */ + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, cur, TRUE) < 0) nerrors++; - } /* end if */ - } /* end for */ + } /* end if */ + } /* end for */ - /* Advance pointers */ - for(i = 0; i < nmeth; i++) + /* Advance pointers */ + for(i = 0; i < nmeth; i++) p[i] = n[i]; - for(i = 0; i < nmeth - 1; i++) + for(i = 0; i < nmeth - 1; i++) w[i] -= 1; } /* end while */ if(nerrors) - HGOTO_ERROR(H5E_IO, H5E_CANTFLUSH, FAIL, "unable to preempt one or more raw data cache entry") + HGOTO_ERROR(H5E_IO, H5E_CANTFLUSH, FAIL, "unable to preempt one or more raw data cache entry") done: FUNC_LEAVE_NOAPI(ret_value) @@ -2995,28 +2998,28 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_lock + * Function: H5D__chunk_lock * - * Purpose: Return a pointer to a dataset chunk. The pointer points - * directly into the chunk cache and should not be freed - * by the caller but will be valid until it is unlocked. The - * input value IDX_HINT is used to speed up cache lookups and - * it's output value should be given to H5D__chunk_unlock(). - * IDX_HINT is ignored if it is out of range, and if it points - * to the wrong entry then we fall back to the normal search - * method. + * Purpose: Return a pointer to a dataset chunk. The pointer points + * directly into the chunk cache and should not be freed + * by the caller but will be valid until it is unlocked. The + * input value IDX_HINT is used to speed up cache lookups and + * it's output value should be given to H5D__chunk_unlock(). + * IDX_HINT is ignored if it is out of range, and if it points + * to the wrong entry then we fall back to the normal search + * method. * - * If RELAX is non-zero and the chunk isn't in the cache then - * don't try to read it from the file, but just allocate an - * uninitialized buffer to hold the result. This is intended - * for output functions that are about to overwrite the entire - * chunk. + * If RELAX is non-zero and the chunk isn't in the cache then + * don't try to read it from the file, but just allocate an + * uninitialized buffer to hold the result. This is intended + * for output functions that are about to overwrite the entire + * chunk. * - * Return: Success: Ptr to a file chunk. + * Return: Success: Ptr to a file chunk. * - * Failure: NULL + * Failure: NULL * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -3031,12 +3034,12 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, const H5O_fill_t *fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */ H5D_fill_buf_info_t fb_info; /* Dataset's fill buffer info */ hbool_t fb_info_init = FALSE; /* Whether the fill value buffer has been initialized */ - H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache*/ - H5D_rdcc_ent_t *ent = NULL; /*cache entry */ + H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache*/ + H5D_rdcc_ent_t *ent = NULL; /*cache entry */ haddr_t chunk_addr = HADDR_UNDEF; /* Address of chunk on disk */ - size_t chunk_size; /*size of a chunk */ - void *chunk = NULL; /*the file chunk */ - void *ret_value; /*return value */ + size_t chunk_size; /*size of a chunk */ + void *chunk = NULL; /*the file chunk */ + void *ret_value; /*return value */ FUNC_ENTER_PACKAGE @@ -3062,7 +3065,7 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, #ifndef NDEBUG { - unsigned u; /*counters */ + unsigned u; /*counters */ /* Make sure this is the right chunk */ for(u = 0; u < layout->u.chunk.ndims; u++) @@ -3105,7 +3108,7 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, /* Check if the chunk exists on disk */ if(H5F_addr_defined(chunk_addr)) { - size_t chunk_alloc = 0; /*allocated chunk size */ + size_t chunk_alloc = 0; /*allocated chunk size */ /* Chunk size on disk isn't [likely] the same size as the final chunk * size in memory, so allocate memory big enough. */ @@ -3126,7 +3129,7 @@ H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, rdcc->stats.nmisses++; } /* end if */ else { - H5D_fill_value_t fill_status; + H5D_fill_value_t fill_status; /* Sanity check */ HDassert(fill->alloc_time != H5D_ALLOC_TIME_EARLY); @@ -3273,23 +3276,23 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_unlock + * Function: H5D__chunk_unlock * - * Purpose: Unlocks a previously locked chunk. The LAYOUT, COMP, and - * OFFSET arguments should be the same as for H5D__chunk_lock(). - * The DIRTY argument should be set to non-zero if the chunk has - * been modified since it was locked. The IDX_HINT argument is - * the returned index hint from the lock operation and BUF is - * the return value from the lock. + * Purpose: Unlocks a previously locked chunk. The LAYOUT, COMP, and + * OFFSET arguments should be the same as for H5D__chunk_lock(). + * The DIRTY argument should be set to non-zero if the chunk has + * been modified since it was locked. The IDX_HINT argument is + * the returned index hint from the lock operation and BUF is + * the return value from the lock. * - * The NACCESSED argument should be the number of bytes accessed - * for reading or writing (depending on the value of DIRTY). - * It's only purpose is to provide additional information to the - * preemption policy. + * The NACCESSED argument should be the number of bytes accessed + * for reading or writing (depending on the value of DIRTY). + * It's only purpose is to provide additional information to the + * preemption policy. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -3299,7 +3302,7 @@ H5D__chunk_unlock(const H5D_io_info_t *io_info, const H5D_chunk_ud_t *udata, hbool_t dirty, void *chunk, uint32_t naccessed) { const H5O_layout_t *layout = &(io_info->dset->shared->layout); /* Dataset layout */ - const H5D_rdcc_t *rdcc = &(io_info->dset->shared->cache.chunk); + const H5D_rdcc_t *rdcc = &(io_info->dset->shared->cache.chunk); herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -3312,7 +3315,7 @@ H5D__chunk_unlock(const H5D_io_info_t *io_info, const H5D_chunk_ud_t *udata, * It's not in the cache, probably because it's too big. If it's * dirty then flush it to disk. In any case, free the chunk. * Note: we have to copy the layout and filter messages so we - * don't discard the `const' qualifier. + * don't discard the `const' qualifier. */ if(dirty) { H5D_rdcc_ent_t fake_ent; /* "fake" chunk cache entry */ @@ -3333,12 +3336,12 @@ H5D__chunk_unlock(const H5D_io_info_t *io_info, const H5D_chunk_ud_t *udata, } /* end else */ } /* end if */ else { - H5D_rdcc_ent_t *ent; /* Chunk's entry in the cache */ + H5D_rdcc_ent_t *ent; /* Chunk's entry in the cache */ /* Sanity check */ - HDassert(udata->idx_hint < rdcc->nslots); - HDassert(rdcc->slot[udata->idx_hint]); - HDassert(rdcc->slot[udata->idx_hint]->chunk == chunk); + HDassert(udata->idx_hint < rdcc->nslots); + HDassert(rdcc->slot[udata->idx_hint]); + HDassert(rdcc->slot[udata->idx_hint]->chunk == chunk); /* * It's in the cache so unlock it. @@ -3360,14 +3363,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_allocated_cb + * Function: H5D__chunk_allocated_cb * - * Purpose: Simply counts the number of chunks for a dataset. + * Purpose: Simply counts the number of chunks for a dataset. * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 21, 1999 * *------------------------------------------------------------------------- @@ -3387,15 +3390,15 @@ H5D__chunk_allocated_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) /*------------------------------------------------------------------------- - * Function: H5D__chunk_allocated + * Function: H5D__chunk_allocated * - * Purpose: Return the number of bytes allocated in the file for storage - * of raw data in the chunked dataset + * Purpose: Return the number of bytes allocated in the file for storage + * of raw data in the chunked dataset * - * Return: Success: Number of bytes stored in all chunks. - * Failure: 0 + * Return: Success: Number of bytes stored in all chunks. + * Failure: 0 * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Tuesday, May 20, 2008 * *------------------------------------------------------------------------- @@ -3404,7 +3407,7 @@ herr_t H5D__chunk_allocated(H5D_t *dset, hid_t dxpl_id, hsize_t *nbytes) { H5D_chk_idx_info_t idx_info; /* Chunked index info */ - const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Raw data chunk cache */ + const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Raw data chunk cache */ H5D_rdcc_ent_t *ent; /* Cache entry */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ @@ -3447,16 +3450,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_allocate + * Function: H5D__chunk_allocate * - * Purpose: Allocate file space for all chunks that are not allocated yet. - * Return SUCCEED if all needed allocation succeed, otherwise - * FAIL. + * Purpose: Allocate file space for all chunks that are not allocated yet. + * Return SUCCEED if all needed allocation succeed, otherwise + * FAIL. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Albert Cheng - * June 26, 1998 + * Programmer: Albert Cheng + * June 26, 1998 * *------------------------------------------------------------------------- */ @@ -3468,8 +3471,8 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, const H5D_chunk_ops_t *ops = dset->shared->layout.storage.u.chunk.ops; /* Chunk operations */ hsize_t min_unalloc[H5O_LAYOUT_NDIMS]; /* First chunk in each dimension that is unallocated */ hsize_t max_unalloc[H5O_LAYOUT_NDIMS]; /* Last chunk in each dimension that is unallocated */ - hsize_t chunk_offset[H5O_LAYOUT_NDIMS]; /* Offset of current chunk */ - size_t orig_chunk_size; /* Original size of chunk in bytes */ + hsize_t chunk_offset[H5O_LAYOUT_NDIMS]; /* Offset of current chunk */ + size_t orig_chunk_size; /* Original size of chunk in bytes */ size_t chunk_size; /* Actual size of chunk in bytes, possibly filtered */ unsigned filter_mask = 0; /* Filter mask for chunks that have them */ const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */ @@ -3484,14 +3487,14 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, hbool_t using_mpi = FALSE; /* Flag to indicate that the file is being accessed with an MPI-capable file driver */ H5D_chunk_coll_info_t chunk_info; /* chunk address information for doing I/O */ #endif /* H5_HAVE_PARALLEL */ - hbool_t carry; /* Flag to indicate that chunk increment carrys to higher dimension (sorta) */ + hbool_t carry; /* Flag to indicate that chunk increment carrys to higher dimension (sorta) */ int space_ndims; /* Dataset's space rank */ hsize_t space_dim[H5O_LAYOUT_NDIMS]; /* Dataset's dataspace dimensions */ const uint32_t *chunk_dim = layout->u.chunk.dim; /* Convenience pointer to chunk dimensions */ int op_dim; /* Current operationg dimension */ H5D_fill_buf_info_t fb_info; /* Dataset's fill buffer info */ hbool_t fb_info_init = FALSE; /* Whether the fill value buffer has been initialized */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -3767,7 +3770,7 @@ H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id, hbool_t full_overwrite, chunk_offset[i] = min_unalloc[i]; else chunk_offset[i] = 0; - } /* end if */ + } /* end if */ else { carry = FALSE; break; @@ -3813,16 +3816,16 @@ done: #ifdef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- - * Function: H5D__chunk_collective_fill + * Function: H5D__chunk_collective_fill * * Purpose: Use MPIO collective write to fill the chunks (if number of * chunks to fill is greater than the number of MPI procs; * otherwise use independent I/O). * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Mohamad Chaarawi - * July 30, 2014 + * Programmer: Mohamad Chaarawi + * July 30, 2014 * *------------------------------------------------------------------------- */ @@ -3830,7 +3833,7 @@ static herr_t H5D__chunk_collective_fill(const H5D_t *dset, hid_t dxpl_id, H5D_chunk_coll_info_t *chunk_info, size_t chunk_size, const void *fill_buf) { - MPI_Comm mpi_comm = MPI_COMM_NULL; /* MPI communicator for file */ + MPI_Comm mpi_comm = MPI_COMM_NULL; /* MPI communicator for file */ int mpi_rank = (-1); /* This process's rank */ int mpi_size = (-1); /* MPI Comm size */ int mpi_code; /* MPI return code */ @@ -3982,15 +3985,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_prune_fill + * Function: H5D__chunk_prune_fill * - * Purpose: Write the fill value to the parts of the chunk that are no + * Purpose: Write the fill value to the parts of the chunk that are no * longer part of the dataspace * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * March 26, 2002 + * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * March 26, 2002 * *------------------------------------------------------------------------- */ @@ -4006,7 +4009,7 @@ H5D__chunk_prune_fill(H5D_chunk_it_ud1_t *udata) hssize_t sel_nelmts; /* Number of elements in selection */ hsize_t count[H5O_LAYOUT_NDIMS]; /* Element count of hyperslab */ size_t chunk_size; /*size of a chunk */ - void *chunk; /* The file chunk */ + void *chunk; /* The file chunk */ H5D_chunk_ud_t chk_udata; /* User data for locking chunk */ uint32_t bytes_accessed; /* Bytes accessed in chunk */ hbool_t chunk_iter_init = FALSE; /* Whether the chunk iterator has been initialized */ @@ -4104,16 +4107,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_prune_by_extent + * Function: H5D__chunk_prune_by_extent * - * Purpose: This function searches for chunks that are no longer necessary + * Purpose: This function searches for chunks that are no longer necessary * both in the raw data cache and in the chunk index. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * Algorithm: Robb Matzke - * March 27, 2002 + * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu + * Algorithm: Robb Matzke + * March 27, 2002 * * The algorithm is: * @@ -4218,8 +4221,8 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset's layout */ - const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ - H5D_rdcc_ent_t *ent = NULL; /* Cache entry */ + const H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ + H5D_rdcc_ent_t *ent = NULL; /* Cache entry */ int space_ndims; /* Dataset's space rank */ hsize_t space_dim[H5O_LAYOUT_NDIMS]; /* Current dataspace dimensions */ int op_dim; /* Current operationg dimension */ @@ -4234,7 +4237,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) hsize_t hyper_start[H5O_LAYOUT_NDIMS]; /* Starting location of hyperslab */ uint32_t elmts_per_chunk; /* Elements in chunk */ hbool_t carry; /* Flag to indicate that chunk increment carrys to higher dimension (sorta) */ - unsigned u; /* Local index variable */ + unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -4251,7 +4254,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) /* Go get the rank & dimensions (including the element size) */ if((space_ndims = H5S_get_simple_extent_dims(dset->shared->space, space_dim, NULL)) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataset dimensions") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get dataset dimensions") space_dim[space_ndims] = layout->u.chunk.dim[space_ndims]; /* The last dimension in chunk_offset is always 0 */ @@ -4273,13 +4276,13 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) elmts_per_chunk = 1; for(u = 0; u < (unsigned)space_ndims; u++) { elmts_per_chunk *= layout->u.chunk.dim[u]; - chunk_dim[u] = layout->u.chunk.dim[u]; - shrunk_dim[u] = space_dim[u] < old_dim[u]; + chunk_dim[u] = layout->u.chunk.dim[u]; + shrunk_dim[u] = space_dim[u] < old_dim[u]; } /* end for */ /* Create a dataspace for a chunk & set the extent */ if(NULL == (chunk_space = H5S_create_simple((unsigned)space_ndims, chunk_dim, NULL))) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace") + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace") /* Reset hyperslab start array */ /* (hyperslabs will always start from origin) */ @@ -4395,7 +4398,7 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) } /* end if */ while(!carry) { - int i; /* Local index variable */ + int i; /* Local index variable */ /* Calculate the index of this chunk */ if(H5VM_chunk_index((unsigned)space_ndims, chunk_offset, @@ -4509,14 +4512,14 @@ done: #ifdef H5_HAVE_PARALLEL /*------------------------------------------------------------------------- - * Function: H5D__chunk_addrmap_cb + * Function: H5D__chunk_addrmap_cb * * Purpose: Callback when obtaining the chunk addresses for all existing chunks * - * Return: Success: Non-negative - * Failure: Negative + * Return: Success: Non-negative + * Failure: Negative * - * Programmer: Kent Yang + * Programmer: Kent Yang * Tuesday, November 15, 2005 * *------------------------------------------------------------------------- @@ -4524,7 +4527,7 @@ done: static int H5D__chunk_addrmap_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) { - H5D_chunk_it_ud2_t *udata = (H5D_chunk_it_ud2_t *)_udata; /* User data for callback */ + H5D_chunk_it_ud2_t *udata = (H5D_chunk_it_ud2_t *)_udata; /* User data for callback */ unsigned rank = udata->common.layout->ndims - 1; /* # of dimensions of dataset */ hsize_t chunk_index; int ret_value = H5_ITER_CONT; /* Return value */ @@ -4544,12 +4547,12 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_addrmap + * Function: H5D__chunk_addrmap * * Purpose: Obtain the chunk addresses for all existing chunks * - * Return: Success: Non-negative on succeed. - * Failure: negative value + * Return: Success: Non-negative on succeed. + * Failure: negative value * * Programmer: Kent Yang * November 15, 2005 @@ -4561,7 +4564,7 @@ H5D__chunk_addrmap(const H5D_io_info_t *io_info, haddr_t chunk_addr[]) { H5D_chk_idx_info_t idx_info; /* Chunked index info */ const H5D_t *dset = io_info->dset; /* Local pointer to dataset info */ - H5D_chunk_it_ud2_t udata; /* User data for iteration callback */ + H5D_chunk_it_ud2_t udata; /* User data for iteration callback */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -4595,14 +4598,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_delete + * Function: H5D__chunk_delete * - * Purpose: Delete raw data storage for entire dataset (i.e. all chunks) + * Purpose: Delete raw data storage for entire dataset (i.e. all chunks) * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Thursday, March 20, 2003 * *------------------------------------------------------------------------- @@ -4615,7 +4618,7 @@ H5D__chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_storage_t *storage) hbool_t layout_read = FALSE; /* Whether the layout message was read from the file */ H5O_pline_t pline; /* I/O pipeline message */ hbool_t pline_read = FALSE; /* Whether the I/O pipeline message was read from the file */ - htri_t exists; /* Flag if header message of interest exists */ + htri_t exists; /* Flag if header message of interest exists */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -4672,15 +4675,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_update_cache + * Function: H5D__chunk_update_cache * - * Purpose: Update any cached chunks index values after the dataspace + * Purpose: Update any cached chunks index values after the dataspace * size has changed * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Quincey Koziol + * Programmer: Quincey Koziol * Saturday, May 29, 2004 * *------------------------------------------------------------------------- @@ -4688,12 +4691,12 @@ done: herr_t H5D__chunk_update_cache(H5D_t *dset, hid_t dxpl_id) { - H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ - H5D_rdcc_ent_t *ent, *next; /*cache entry */ - H5D_rdcc_ent_t *old_ent; /* Old cache entry */ + H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /*raw data chunk cache */ + H5D_rdcc_ent_t *ent, *next; /*cache entry */ + H5D_rdcc_ent_t *old_ent; /* Old cache entry */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ - unsigned rank; /* Current # of dimensions */ + unsigned rank; /* Current # of dimensions */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -4717,7 +4720,7 @@ H5D__chunk_update_cache(H5D_t *dset, hid_t dxpl_id) /* Recompute the index for each cached chunk that is in a dataset */ for(ent = rdcc->head; ent; ent = next) { hsize_t idx; /* Chunk index */ - unsigned old_idx; /* Previous index number */ + unsigned old_idx; /* Previous index number */ /* Get the pointer to the next cache entry */ next = ent->next; @@ -4914,8 +4917,8 @@ H5D__chunk_copy_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) HGOTO_ERROR(H5E_DATASET, H5E_BADRANGE, H5_ITER_ERROR, "chunk too large for 32-bit length") #endif /* H5_SIZEOF_SIZE_T > 4 */ H5_CHECKED_ASSIGN(udata_dst.nbytes, uint32_t, nbytes, size_t); - udata->buf = buf; - udata->buf_size = buf_size; + udata->buf = buf; + udata->buf_size = buf_size; } /* end if */ /* Insert chunk into the destination index */ @@ -4933,15 +4936,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_copy + * Function: H5D__chunk_copy * - * Purpose: Copy chunked storage from SRC file to DST file. + * Purpose: Copy chunked storage from SRC file to DST file. * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * * Programmer: Peter Cao - * August 20, 2005 + * August 20, 2005 * *------------------------------------------------------------------------- */ @@ -5227,7 +5230,7 @@ H5D__chunk_bh_info(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout, /* Get size of index structure */ if((layout->storage.u.chunk.ops->size)(&idx_info, index_size) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve chunk index info") + HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to retrieve chunk index info") done: FUNC_LEAVE_NOAPI(ret_value) @@ -5235,16 +5238,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_dump_index_cb + * Function: H5D__chunk_dump_index_cb * - * Purpose: If the UDATA.STREAM member is non-null then debugging + * Purpose: If the UDATA.STREAM member is non-null then debugging * information is written to that stream. * - * Return: Success: Non-negative + * Return: Success: Non-negative * - * Failure: Negative + * Failure: Negative * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 21, 1999 * *------------------------------------------------------------------------- @@ -5253,7 +5256,7 @@ done: static int H5D__chunk_dump_index_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) { - H5D_chunk_it_ud4_t *udata = (H5D_chunk_it_ud4_t *)_udata; /* User data from caller */ + H5D_chunk_it_ud4_t *udata = (H5D_chunk_it_ud4_t *)_udata; /* User data from caller */ FUNC_ENTER_STATIC_NOERR @@ -5281,15 +5284,15 @@ H5D__chunk_dump_index_cb(const H5D_chunk_rec_t *chunk_rec, void *_udata) /*------------------------------------------------------------------------- - * Function: H5D__chunk_dump_index + * Function: H5D__chunk_dump_index * - * Purpose: Prints information about the storage index to the specified - * stream. + * Purpose: Prints information about the storage index to the specified + * stream. * - * Return: Success: Non-negative - * Failure: negative + * Return: Success: Non-negative + * Failure: negative * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, April 28, 1999 * *------------------------------------------------------------------------- @@ -5336,14 +5339,14 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__chunk_dest + * Function: H5D__chunk_dest * - * Purpose: Destroy the entire chunk cache by flushing dirty entries, - * preempting all entries, and freeing the cache itself. + * Purpose: Destroy the entire chunk cache by flushing dirty entries, + * preempting all entries, and freeing the cache itself. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -5354,9 +5357,9 @@ H5D__chunk_dest(H5F_t *f, hid_t dxpl_id, H5D_t *dset) H5D_chk_idx_info_t idx_info; /* Chunked index info */ H5D_dxpl_cache_t _dxpl_cache; /* Data transfer property cache buffer */ H5D_dxpl_cache_t *dxpl_cache = &_dxpl_cache; /* Data transfer property cache */ - H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Dataset's chunk cache */ - H5D_rdcc_ent_t *ent = NULL, *next = NULL; /* Pointer to current & next cache entries */ - int nerrors = 0; /* Accumulated count of errors */ + H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); /* Dataset's chunk cache */ + H5D_rdcc_ent_t *ent = NULL, *next = NULL; /* Pointer to current & next cache entries */ + int nerrors = 0; /* Accumulated count of errors */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE @@ -5370,14 +5373,14 @@ H5D__chunk_dest(H5F_t *f, hid_t dxpl_id, H5D_t *dset) /* Flush all the cached chunks */ for(ent = rdcc->head; ent; ent = next) { - next = ent->next; - if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, ent, TRUE) < 0) - nerrors++; + next = ent->next; + if(H5D__chunk_cache_evict(dset, dxpl_id, dxpl_cache, ent, TRUE) < 0) + nerrors++; } /* end for */ /* Continue even if there are failures. */ if(nerrors) - HDONE_ERROR(H5E_IO, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks") + HDONE_ERROR(H5E_IO, H5E_CANTFLUSH, FAIL, "unable to flush one or more raw data chunks") /* Release cache structures */ if(rdcc->slot) @@ -5394,7 +5397,7 @@ H5D__chunk_dest(H5F_t *f, hid_t dxpl_id, H5D_t *dset) /* Free any index structures */ if(dset->shared->layout.storage.u.chunk.ops->dest && (dset->shared->layout.storage.u.chunk.ops->dest)(&idx_info) < 0) - HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to release chunk index info") + HGOTO_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "unable to release chunk index info") done: FUNC_LEAVE_NOAPI(ret_value) @@ -5403,15 +5406,15 @@ done: #ifdef H5D_CHUNK_DEBUG /*------------------------------------------------------------------------- - * Function: H5D__chunk_stats + * Function: H5D__chunk_stats * - * Purpose: Print raw data cache statistics to the debug stream. If - * HEADERS is non-zero then print table column headers, - * otherwise assume that the H5AC layer has already printed them. + * Purpose: Print raw data cache statistics to the debug stream. If + * HEADERS is non-zero then print table column headers, + * otherwise assume that the H5AC layer has already printed them. * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Thursday, May 21, 1998 * *------------------------------------------------------------------------- @@ -5419,9 +5422,9 @@ done: herr_t H5D__chunk_stats(const H5D_t *dset, hbool_t headers) { - H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); - double miss_rate; - char ascii[32]; + H5D_rdcc_t *rdcc = &(dset->shared->cache.chunk); + double miss_rate; + char ascii[32]; herr_t ret_value=SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE_NOERR @@ -5466,20 +5469,20 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__nonexistent_readvv_cb + * Function: H5D__nonexistent_readvv_cb * - * Purpose: Callback operation for performing fill value I/O operation + * Purpose: Callback operation for performing fill value I/O operation * on memory buffer. * - * Note: This algorithm is pretty inefficient about initializing and + * Note: This algorithm is pretty inefficient about initializing and * terminating the fill buffer info structure and it would be * faster to refactor this into a "real" initialization routine, * and a "vectorized fill" routine. -QAK * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Quincey Koziol - * 30 Sep 2010 + * Programmer: Quincey Koziol + * 30 Sep 2010 * *------------------------------------------------------------------------- */ @@ -5515,22 +5518,22 @@ done: /*------------------------------------------------------------------------- - * Function: H5D__nonexistent_readvv + * Function: H5D__nonexistent_readvv * - * Purpose: When the chunk doesn't exist on disk and the chunk is bigger + * Purpose: When the chunk doesn't exist on disk and the chunk is bigger * than the cache size, performs fill value I/O operation on * memory buffer, advancing through two I/O vectors, until one * runs out. * - * Note: This algorithm is pretty inefficient about initializing and + * Note: This algorithm is pretty inefficient about initializing and * terminating the fill buffer info structure and it would be * faster to refactor this into a "real" initialization routine, * and a "vectorized fill" routine. -QAK * - * Return: Non-negative on success/Negative on failure + * Return: Non-negative on success/Negative on failure * - * Programmer: Raymond Lu - * 6 Feb 2009 + * Programmer: Raymond Lu + * 6 Feb 2009 * *------------------------------------------------------------------------- */ @@ -600,7 +600,7 @@ ssize_t H5PLget(unsigned int index, char *pathname/*out*/, size_t size) { ssize_t ret_value = 0; /* Return value */ - ssize_t len = 0; /* Length of pathname */ + size_t len = 0; /* Length of pathname */ char *dl_path = NULL; FUNC_ENTER_API(FAIL) @@ -619,7 +619,7 @@ H5PLget(unsigned int index, char *pathname/*out*/, size_t size) } /* end if */ /* Set return value */ - ret_value = len; + ret_value = (ssize_t)len; done: FUNC_LEAVE_API(ret_value) @@ -631,14 +631,22 @@ done: * * Purpose: Query the size of the current list of plugin paths. * - * Return: Non-negative or success. + * Return: Plugin path size * *------------------------------------------------------------------------- */ -unsigned int -H5PLsize(void) +herr_t +H5PLsize(unsigned int *listsize) { - return (unsigned int)H5PL_num_paths_g; + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE1("e", "*Iu", listsize); + + *listsize = (unsigned int)H5PL_num_paths_g; + +done: + FUNC_LEAVE_API(ret_value) } /* end H5PLsize() */ diff --git a/src/H5PLpublic.h b/src/H5PLpublic.h index 5e4dcae..12cdc87 100644 --- a/src/H5PLpublic.h +++ b/src/H5PLpublic.h @@ -43,14 +43,14 @@ extern "C" { /* plugin state */ H5_DLL herr_t H5PLset_loading_state(unsigned int plugin_type); -H5_DLL herr_t H5PLget_loading_state(unsigned int* plugin_type/*out*/); -H5_DLL herr_t H5PLappend(const char* plugin_path); -H5_DLL herr_t H5PLprepend(const char* plugin_path); -H5_DLL herr_t H5PLreplace(const char* plugin_path, unsigned int index); -H5_DLL herr_t H5PLinsert(const char* plugin_path, unsigned int index); +H5_DLL herr_t H5PLget_loading_state(unsigned int *plugin_type/*out*/); +H5_DLL herr_t H5PLappend(const char *plugin_path); +H5_DLL herr_t H5PLprepend(const char *plugin_path); +H5_DLL herr_t H5PLreplace(const char *plugin_path, unsigned int index); +H5_DLL herr_t H5PLinsert(const char *plugin_path, unsigned int index); H5_DLL herr_t H5PLremove(unsigned int index); H5_DLL ssize_t H5PLget(unsigned int index, char *pathname/*out*/, size_t size); -H5_DLL unsigned int H5PLsize(void); +H5_DLL herr_t H5PLsize(unsigned int *listsize/*out*/); #ifdef __cplusplus } diff --git a/src/H5private.h b/src/H5private.h index 3c0cb75..b079136 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -1048,6 +1048,9 @@ typedef off_t h5_stat_size_t; #define HDpow(X,Y) pow(X,Y) #endif /* HDpow */ /* printf() variable arguments */ +#ifndef HDprintf + #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__) +#endif /* HDprintf */ #ifndef HDputc #define HDputc(C,F) putc(C,F) #endif /* HDputc*/ diff --git a/src/H5public.h b/src/H5public.h index b8919c9..ad4979a 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -95,9 +95,9 @@ extern "C" { #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 8 /* For minor interface/format changes */ #define H5_VERS_RELEASE 19 /* For tweaks, bug-fixes, or development */ -#define H5_VERS_SUBRELEASE "snap2" /* For pre-releases like snap0 */ +#define H5_VERS_SUBRELEASE "snap3" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.8.19-snap2" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.8.19-snap3" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/src/Makefile.in b/src/Makefile.in index c1d926e..b783a5a 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -847,7 +847,7 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers settingsdir = $(libdir) settings_DATA = libhdf5.settings -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -855,10 +855,12 @@ settings_DATA = libhdf5.settings LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1742,6 +1744,7 @@ trace: $(libhdf5_la_SOURCES) # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1749,7 +1752,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/test/Makefile.am b/test/Makefile.am index fb611b3..2b9ee83 100644 --- a/test/Makefile.am +++ b/test/Makefile.am @@ -81,7 +81,7 @@ noinst_LTLIBRARIES=libh5test.la if HAVE_SHARED_CONDITIONAL # The libdynlib1, libdynlib2, libdynlib3, and libdynlib4 library for testing plugin module plugin.c. # Build it as shared library if configure is enabled for shared library. - lib_LTLIBRARIES=libdynlib1.la libdynlib2.la libdynlib3.la libdynlib4.la + dyn_LTLIBRARIES=libdynlib1.la libdynlib2.la libdynlib3.la libdynlib4.la libdynlib1_la_SOURCES=dynlib1.c libdynlib2_la_SOURCES=dynlib2.c libdynlib3_la_SOURCES=dynlib3.c @@ -91,8 +91,20 @@ if HAVE_SHARED_CONDITIONAL libdynlib3_la_LDFLAGS = -avoid-version -module -shared -export-dynamic libdynlib4_la_LDFLAGS = -avoid-version -module -shared -export-dynamic -install-exec-hook: - $(RM) $(DESTDIR)$(libdir)/*dynlib* +libdynlib1.la: $(libdynlib1_la_OBJECTS) $(libdynlib1_la_DEPENDENCIES) $(EXTRA_libdynlib1_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlib1_la_LINK) $(am_libdynlib1_la_rpath) $(libdynlib1_la_OBJECTS) $(libdynlib1_la_LIBADD) + +libdynlib2.la: $(libdynlib2_la_OBJECTS) $(libdynlib2_la_DEPENDENCIES) $(EXTRA_libdynlib2_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlib2_la_LINK) $(am_libdynlib2_la_rpath) $(libdynlib2_la_OBJECTS) $(libdynlib2_la_LIBADD) + +libdynlib3.la: $(libdynlib3_la_OBJECTS) $(libdynlib3_la_DEPENDENCIES) $(EXTRA_libdynlib3_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlib3_la_LINK) $(am_libdynlib3_la_rpath) $(libdynlib3_la_OBJECTS) $(libdynlib3_la_LIBADD) + +libdynlib4.la: $(libdynlib4_la_OBJECTS) $(libdynlib4_la_DEPENDENCIES) $(EXTRA_libdynlib4_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlib4_la_LINK) $(am_libdynlib4_la_rpath) $(libdynlib4_la_OBJECTS) $(libdynlib4_la_LIBADD) + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* endif libh5test_la_SOURCES=h5test.c testframe.c cache_common.c diff --git a/test/Makefile.in b/test/Makefile.in index 1e481bc..79e31ba 100644 --- a/test/Makefile.in +++ b/test/Makefile.in @@ -154,8 +154,8 @@ am__uninstall_files_from_dir = { \ || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ $(am__cd) "$$dir" && rm -f $$files; }; \ } -am__installdirs = "$(DESTDIR)$(libdir)" -LTLIBRARIES = $(lib_LTLIBRARIES) $(noinst_LTLIBRARIES) +am__installdirs = "$(DESTDIR)$(dyndir)" +LTLIBRARIES = $(dyn_LTLIBRARIES) $(noinst_LTLIBRARIES) libdynlib1_la_LIBADD = am__libdynlib1_la_SOURCES_DIST = dynlib1.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib1_la_OBJECTS = dynlib1.lo @@ -168,7 +168,7 @@ libdynlib1_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libdynlib1_la_LDFLAGS) $(LDFLAGS) -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib1_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) libdynlib2_la_LIBADD = am__libdynlib2_la_SOURCES_DIST = dynlib2.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib2_la_OBJECTS = dynlib2.lo @@ -177,7 +177,7 @@ libdynlib2_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libdynlib2_la_LDFLAGS) $(LDFLAGS) -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib2_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) libdynlib3_la_LIBADD = am__libdynlib3_la_SOURCES_DIST = dynlib3.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib3_la_OBJECTS = dynlib3.lo @@ -186,7 +186,7 @@ libdynlib3_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libdynlib3_la_LDFLAGS) $(LDFLAGS) -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib3_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) libdynlib4_la_LIBADD = am__libdynlib4_la_SOURCES_DIST = dynlib4.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib4_la_OBJECTS = dynlib4.lo @@ -195,7 +195,7 @@ libdynlib4_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libdynlib4_la_LDFLAGS) $(LDFLAGS) -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlib4_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) libh5test_la_LIBADD = am_libh5test_la_OBJECTS = h5test.lo testframe.lo cache_common.lo libh5test_la_OBJECTS = $(am_libh5test_la_OBJECTS) @@ -1124,7 +1124,7 @@ BUILD_ALL_PROGS = gen_bad_ohdr gen_bogus gen_cross gen_deflate gen_filters gen_i # The libh5test library provides common support code for the tests. noinst_LTLIBRARIES = libh5test.la -@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlib1.la libdynlib2.la libdynlib3.la libdynlib4.la +@HAVE_SHARED_CONDITIONAL_TRUE@dyn_LTLIBRARIES = libdynlib1.la libdynlib2.la libdynlib3.la libdynlib4.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib1_la_SOURCES = dynlib1.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib2_la_SOURCES = dynlib2.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib3_la_SOURCES = dynlib3.c @@ -1133,6 +1133,9 @@ noinst_LTLIBRARIES = libh5test.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib2_la_LDFLAGS = -avoid-version -module -shared -export-dynamic @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib3_la_LDFLAGS = -avoid-version -module -shared -export-dynamic @HAVE_SHARED_CONDITIONAL_TRUE@libdynlib4_la_LDFLAGS = -avoid-version -module -shared -export-dynamic + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* libh5test_la_SOURCES = h5test.c testframe.c cache_common.c # Use libhd5test.la to compile all of the tests @@ -1155,7 +1158,7 @@ testhdf5_SOURCES = testhdf5.c tarray.c tattr.c tchecksum.c tconfig.c tfile.c \ # Temporary files. DISTCLEANFILES = testerror.sh testlibinfo.sh testcheck_version.sh testlinks_env.sh test_plugin.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -1163,10 +1166,12 @@ DISTCLEANFILES = testerror.sh testlibinfo.sh testcheck_version.sh testlinks_env. LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1221,33 +1226,33 @@ testlinks_env.sh: $(top_builddir)/config.status $(srcdir)/testlinks_env.sh.in test_plugin.sh: $(top_builddir)/config.status $(srcdir)/test_plugin.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ -install-libLTLIBRARIES: $(lib_LTLIBRARIES) +install-dynLTLIBRARIES: $(dyn_LTLIBRARIES) @$(NORMAL_INSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ list2="$$list2 $$p"; \ else :; fi; \ done; \ test -z "$$list2" || { \ - echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ - $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + echo " $(MKDIR_P) '$(DESTDIR)$(dyndir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(dyndir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(dyndir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(dyndir)"; \ } -uninstall-libLTLIBRARIES: +uninstall-dynLTLIBRARIES: @$(NORMAL_UNINSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ for p in $$list; do \ $(am__strip_dir) \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(dyndir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(dyndir)/$$f"; \ done -clean-libLTLIBRARIES: - -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; \ +clean-dynLTLIBRARIES: + -test -z "$(dyn_LTLIBRARIES)" || rm -f $(dyn_LTLIBRARIES) + @list='$(dyn_LTLIBRARIES)'; \ locs=`for p in $$list; do echo $$p; done | \ sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ sort -u`; \ @@ -1267,17 +1272,17 @@ clean-noinstLTLIBRARIES: rm -f $${locs}; \ } -libdynlib1.la: $(libdynlib1_la_OBJECTS) $(libdynlib1_la_DEPENDENCIES) $(EXTRA_libdynlib1_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlib1_la_LINK) $(am_libdynlib1_la_rpath) $(libdynlib1_la_OBJECTS) $(libdynlib1_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlib1.la: $(libdynlib1_la_OBJECTS) $(libdynlib1_la_DEPENDENCIES) $(EXTRA_libdynlib1_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlib1_la_LINK) $(am_libdynlib1_la_rpath) $(libdynlib1_la_OBJECTS) $(libdynlib1_la_LIBADD) $(LIBS) -libdynlib2.la: $(libdynlib2_la_OBJECTS) $(libdynlib2_la_DEPENDENCIES) $(EXTRA_libdynlib2_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlib2_la_LINK) $(am_libdynlib2_la_rpath) $(libdynlib2_la_OBJECTS) $(libdynlib2_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlib2.la: $(libdynlib2_la_OBJECTS) $(libdynlib2_la_DEPENDENCIES) $(EXTRA_libdynlib2_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlib2_la_LINK) $(am_libdynlib2_la_rpath) $(libdynlib2_la_OBJECTS) $(libdynlib2_la_LIBADD) $(LIBS) -libdynlib3.la: $(libdynlib3_la_OBJECTS) $(libdynlib3_la_DEPENDENCIES) $(EXTRA_libdynlib3_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlib3_la_LINK) $(am_libdynlib3_la_rpath) $(libdynlib3_la_OBJECTS) $(libdynlib3_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlib3.la: $(libdynlib3_la_OBJECTS) $(libdynlib3_la_DEPENDENCIES) $(EXTRA_libdynlib3_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlib3_la_LINK) $(am_libdynlib3_la_rpath) $(libdynlib3_la_OBJECTS) $(libdynlib3_la_LIBADD) $(LIBS) -libdynlib4.la: $(libdynlib4_la_OBJECTS) $(libdynlib4_la_DEPENDENCIES) $(EXTRA_libdynlib4_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlib4_la_LINK) $(am_libdynlib4_la_rpath) $(libdynlib4_la_OBJECTS) $(libdynlib4_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlib4.la: $(libdynlib4_la_OBJECTS) $(libdynlib4_la_DEPENDENCIES) $(EXTRA_libdynlib4_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlib4_la_LINK) $(am_libdynlib4_la_rpath) $(libdynlib4_la_OBJECTS) $(libdynlib4_la_LIBADD) $(LIBS) libh5test.la: $(libh5test_la_OBJECTS) $(libh5test_la_DEPENDENCIES) $(EXTRA_libh5test_la_DEPENDENCIES) $(AM_V_CCLD)$(LINK) $(libh5test_la_OBJECTS) $(libh5test_la_LIBADD) $(LIBS) @@ -2269,7 +2274,7 @@ check-am: all-am check: check-am all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local installdirs: - for dir in "$(DESTDIR)$(libdir)"; do \ + for dir in "$(DESTDIR)$(dyndir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -2306,10 +2311,9 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." -@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am -clean-am: clean-checkPROGRAMS clean-generic clean-libLTLIBRARIES \ +clean-am: clean-checkPROGRAMS clean-dynLTLIBRARIES clean-generic \ clean-libtool clean-noinstLTLIBRARIES clean-noinstPROGRAMS \ mostlyclean-am @@ -2331,15 +2335,14 @@ info: info-am info-am: -install-data-am: +install-data-am: install-dynLTLIBRARIES install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-libLTLIBRARIES - @$(NORMAL_INSTALL) - $(MAKE) $(AM_MAKEFLAGS) install-exec-hook +install-exec-am: + install-html: install-html-am install-html-am: @@ -2378,26 +2381,26 @@ ps: ps-am ps-am: -uninstall-am: uninstall-libLTLIBRARIES +uninstall-am: uninstall-dynLTLIBRARIES -.MAKE: check-am install-am install-exec-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \ - check-am clean clean-checkPROGRAMS clean-generic \ - clean-libLTLIBRARIES clean-libtool clean-noinstLTLIBRARIES \ + check-am clean clean-checkPROGRAMS clean-dynLTLIBRARIES \ + clean-generic clean-libtool clean-noinstLTLIBRARIES \ clean-noinstPROGRAMS cscopelist-am ctags ctags-am distclean \ distclean-compile distclean-generic distclean-libtool \ distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-dvi \ - install-dvi-am install-exec install-exec-am install-exec-hook \ - install-html install-html-am install-info install-info-am \ - install-libLTLIBRARIES install-man install-pdf install-pdf-am \ + install-dvi-am install-dynLTLIBRARIES install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ install-ps install-ps-am install-strip installcheck \ installcheck-am installdirs maintainer-clean \ maintainer-clean-generic mostlyclean mostlyclean-compile \ mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \ - uninstall-libLTLIBRARIES + uninstall-dynLTLIBRARIES .PRECIOUS: Makefile @@ -2416,8 +2419,17 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@ # The libdynlib1, libdynlib2, libdynlib3, and libdynlib4 library for testing plugin module plugin.c. @HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. -@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: -@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlib1.la: $(libdynlib1_la_OBJECTS) $(libdynlib1_la_DEPENDENCIES) $(EXTRA_libdynlib1_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlib1_la_LINK) $(am_libdynlib1_la_rpath) $(libdynlib1_la_OBJECTS) $(libdynlib1_la_LIBADD) + +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlib2.la: $(libdynlib2_la_OBJECTS) $(libdynlib2_la_DEPENDENCIES) $(EXTRA_libdynlib2_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlib2_la_LINK) $(am_libdynlib2_la_rpath) $(libdynlib2_la_OBJECTS) $(libdynlib2_la_LIBADD) + +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlib3.la: $(libdynlib3_la_OBJECTS) $(libdynlib3_la_DEPENDENCIES) $(EXTRA_libdynlib3_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlib3_la_LINK) $(am_libdynlib3_la_rpath) $(libdynlib3_la_OBJECTS) $(libdynlib3_la_LIBADD) + +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlib4.la: $(libdynlib4_la_OBJECTS) $(libdynlib4_la_DEPENDENCIES) $(EXTRA_libdynlib4_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlib4_la_LINK) $(am_libdynlib4_la_rpath) $(libdynlib4_la_OBJECTS) $(libdynlib4_la_LIBADD) # Additional target for running timing test timings _timings: testmeta @@ -2433,6 +2445,7 @@ flush2.chkexe_: flush1.chkexe_ # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -2440,7 +2453,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/test/plugin.c b/test/plugin.c index f65d345..855273b 100644 --- a/test/plugin.c +++ b/test/plugin.c @@ -733,7 +733,7 @@ test_filter_path_apis(void) if(H5Zfilter_avail(H5Z_FILTER_DYNLIB1) != TRUE) TEST_ERROR - ndx = H5PLsize(); + H5PLsize(&ndx); TESTING(" remove"); /* Remove all existing paths*/ @@ -743,7 +743,8 @@ test_filter_path_apis(void) TEST_ERROR } /* end if */ /* Verify the table is empty */ - if(H5PLsize() > 0) TEST_ERROR + H5PLsize(&ndx); + if(ndx > 0) TEST_ERROR PASSED(); TESTING(" remove (exceed min)"); @@ -764,7 +765,8 @@ test_filter_path_apis(void) } } /* Verify the table is full */ - if(H5PLsize() != H5PL_MAX_PATH_NUM) TEST_ERROR + H5PLsize(&ndx); + if(ndx != H5PL_MAX_PATH_NUM) TEST_ERROR PASSED(); TESTING(" append (exceed)"); @@ -835,7 +837,8 @@ test_filter_path_apis(void) PASSED(); /* Verify the table is not full */ - if (H5PLsize() != H5PL_MAX_PATH_NUM - 1) TEST_ERROR + H5PLsize(&ndx); + if (ndx != H5PL_MAX_PATH_NUM - 1) TEST_ERROR TESTING(" prepend"); /* Prepend one path*/ @@ -846,7 +849,8 @@ test_filter_path_apis(void) } /* Verify the table is full */ - if(H5PLsize() != H5PL_MAX_PATH_NUM) TEST_ERROR + H5PLsize(&ndx); + if(ndx != H5PL_MAX_PATH_NUM) TEST_ERROR /* Verify that the entries were moved */ if(H5PLget(8, pathname, 256) <= 0) TEST_ERROR @@ -880,7 +884,8 @@ test_filter_path_apis(void) } /* Verify the table is full */ - if(H5PLsize() != H5PL_MAX_PATH_NUM) TEST_ERROR + H5PLsize(&ndx); + if(ndx != H5PL_MAX_PATH_NUM) TEST_ERROR /* Verify that the entries were not moved */ if(H5PLget(0, pathname, 256) <= 0) TEST_ERROR @@ -909,7 +914,8 @@ test_filter_path_apis(void) PASSED(); /* Verify the table is not full */ - if(H5PLsize() != 15) TEST_ERROR + H5PLsize(&ndx); + if(ndx != 15) TEST_ERROR TESTING(" insert"); /* Insert one path*/ @@ -928,7 +934,8 @@ test_filter_path_apis(void) PASSED(); /* Verify the table is full */ - if(H5PLsize() != H5PL_MAX_PATH_NUM) TEST_ERROR + H5PLsize(&ndx); + if(ndx != H5PL_MAX_PATH_NUM) TEST_ERROR TESTING(" insert (exceed)"); /* Exceed the max path insert */ diff --git a/testpar/Makefile.in b/testpar/Makefile.in index 00dd130..b27bc45 100644 --- a/testpar/Makefile.in +++ b/testpar/Makefile.in @@ -717,7 +717,7 @@ testphdf5_SOURCES = testphdf5.c t_dset.c t_file.c t_file_image.c t_mdset.c \ # The tests all depend on the hdf5 library and the test library LDADD = $(LIBH5TEST) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -725,10 +725,12 @@ LDADD = $(LIBH5TEST) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1237,6 +1239,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1244,7 +1247,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/Makefile.in b/tools/Makefile.in index 536ae63..8321845 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -673,7 +673,7 @@ SUBDIRS = lib h5diff h5ls h5dump misc h5import h5repack h5jam h5copy h5stat \ perform -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -681,10 +681,12 @@ SUBDIRS = lib h5diff h5ls h5dump misc h5import h5repack h5jam h5copy h5stat \ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1170,6 +1172,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1177,7 +1180,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index 60f5b5c..77964d2 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -692,7 +692,7 @@ h5copygentest_SOURCES = h5copygentest.c # All programs depend on the hdf5 and h5tools libraries LDADD = $(LIBH5TOOLS) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -700,10 +700,12 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1231,6 +1233,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1238,7 +1241,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am index 00fc9b0..c667ee4 100644 --- a/tools/h5diff/Makefile.am +++ b/tools/h5diff/Makefile.am @@ -60,12 +60,14 @@ LDADD=$(LIBH5TOOLS) $(LIBHDF5) if HAVE_SHARED_CONDITIONAL # Build it as shared library if configure is enabled for shared library. - lib_LTLIBRARIES=libdynlibdiff.la + dyn_LTLIBRARIES=libdynlibdiff.la libdynlibdiff_la_SOURCES=dynlib_diff.c libdynlibdiff_la_LDFLAGS = -avoid-version -module -shared -export-dynamic -install-exec-hook: - $(RM) $(DESTDIR)$(libdir)/*dynlib* +libdynlibdiff.la: $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_DEPENDENCIES) $(EXTRA_libdynlibdiff_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlibdiff_la_LINK) $(am_libdynlibdiff_la_rpath) $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_LIBADD) +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* endif # Temporary files. *.h5 are generated by h5diff. They should diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 1ac145d..271663d 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -148,8 +148,8 @@ am__uninstall_files_from_dir = { \ || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ $(am__cd) "$$dir" && rm -f $$files; }; \ } -am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" -LTLIBRARIES = $(lib_LTLIBRARIES) +am__installdirs = "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)" +LTLIBRARIES = $(dyn_LTLIBRARIES) libdynlibdiff_la_LIBADD = am__libdynlibdiff_la_SOURCES_DIST = dynlib_diff.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibdiff_la_OBJECTS = \ @@ -164,7 +164,7 @@ libdynlibdiff_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \ $(AM_CFLAGS) $(CFLAGS) $(libdynlibdiff_la_LDFLAGS) $(LDFLAGS) \ -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibdiff_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT) am__EXEEXT_2 = h5diffgentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) @@ -694,6 +694,8 @@ TRACE = perl $(top_srcdir)/bin/trace # .chkexe files are used to mark tests that have run successfully. # .chklog files are output from those tests. # *.clog and *.clog2 are from the MPE option. +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* # Temporary files. *.h5 are generated by h5diff. They should # be copied to the testfiles/ directory if update is required @@ -722,12 +724,12 @@ h5diffgentest_SOURCES = h5diffgentest.c # Programs depend on the main HDF5 library and tools library LDADD = $(LIBH5TOOLS) $(LIBHDF5) -@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlibdiff.la +@HAVE_SHARED_CONDITIONAL_TRUE@dyn_LTLIBRARIES = libdynlibdiff.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdiff_la_SOURCES = dynlib_diff.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdiff_la_LDFLAGS = -avoid-version -module -shared -export-dynamic DISTCLEANFILES = h5diff_plugin.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -735,10 +737,12 @@ DISTCLEANFILES = h5diff_plugin.sh LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -787,33 +791,33 @@ testh5diff.sh: $(top_builddir)/config.status $(srcdir)/testh5diff.sh.in testph5diff.sh: $(top_builddir)/config.status $(srcdir)/testph5diff.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ -install-libLTLIBRARIES: $(lib_LTLIBRARIES) +install-dynLTLIBRARIES: $(dyn_LTLIBRARIES) @$(NORMAL_INSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ list2="$$list2 $$p"; \ else :; fi; \ done; \ test -z "$$list2" || { \ - echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ - $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + echo " $(MKDIR_P) '$(DESTDIR)$(dyndir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(dyndir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(dyndir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(dyndir)"; \ } -uninstall-libLTLIBRARIES: +uninstall-dynLTLIBRARIES: @$(NORMAL_UNINSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ for p in $$list; do \ $(am__strip_dir) \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(dyndir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(dyndir)/$$f"; \ done -clean-libLTLIBRARIES: - -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; \ +clean-dynLTLIBRARIES: + -test -z "$(dyn_LTLIBRARIES)" || rm -f $(dyn_LTLIBRARIES) + @list='$(dyn_LTLIBRARIES)'; \ locs=`for p in $$list; do echo $$p; done | \ sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ sort -u`; \ @@ -822,8 +826,8 @@ clean-libLTLIBRARIES: rm -f $${locs}; \ } -libdynlibdiff.la: $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_DEPENDENCIES) $(EXTRA_libdynlibdiff_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlibdiff_la_LINK) $(am_libdynlibdiff_la_rpath) $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlibdiff.la: $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_DEPENDENCIES) $(EXTRA_libdynlibdiff_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlibdiff_la_LINK) $(am_libdynlibdiff_la_rpath) $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_LIBADD) $(LIBS) install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ @@ -1173,10 +1177,8 @@ check-am: all-am $(MAKE) $(AM_MAKEFLAGS) check-TESTS check: check-am all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local -install-binPROGRAMS: install-libLTLIBRARIES - installdirs: - for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"; do \ + for dir in "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -1213,11 +1215,10 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." -@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am -clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libLTLIBRARIES clean-libtool mostlyclean-am +clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-dynLTLIBRARIES \ + clean-generic clean-libtool mostlyclean-am distclean: distclean-am -rm -rf ./$(DEPDIR) @@ -1237,15 +1238,14 @@ info: info-am info-am: -install-data-am: +install-data-am: install-dynLTLIBRARIES install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-binPROGRAMS install-libLTLIBRARIES - @$(NORMAL_INSTALL) - $(MAKE) $(AM_MAKEFLAGS) install-exec-hook +install-exec-am: install-binPROGRAMS + install-html: install-html-am install-html-am: @@ -1284,26 +1284,26 @@ ps: ps-am ps-am: -uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES +uninstall-am: uninstall-binPROGRAMS uninstall-dynLTLIBRARIES -.MAKE: check-am install-am install-exec-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \ check-am clean clean-binPROGRAMS clean-checkPROGRAMS \ - clean-generic clean-libLTLIBRARIES clean-libtool cscopelist-am \ + clean-dynLTLIBRARIES clean-generic clean-libtool cscopelist-am \ ctags ctags-am distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-exec-hook install-html \ - install-html-am install-info install-info-am \ - install-libLTLIBRARIES install-man install-pdf install-pdf-am \ - install-ps install-ps-am install-strip installcheck \ - installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \ - uninstall-binPROGRAMS uninstall-libLTLIBRARIES + install-dynLTLIBRARIES install-exec install-exec-am \ + install-html install-html-am install-info install-info-am \ + install-man install-pdf install-pdf-am install-ps \ + install-ps-am install-strip installcheck installcheck-am \ + installdirs maintainer-clean maintainer-clean-generic \ + mostlyclean mostlyclean-compile mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \ + recheck tags tags-am uninstall uninstall-am \ + uninstall-binPROGRAMS uninstall-dynLTLIBRARIES .PRECIOUS: Makefile @@ -1321,11 +1321,12 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. -@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: -@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdiff.la: $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_DEPENDENCIES) $(EXTRA_libdynlibdiff_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlibdiff_la_LINK) $(am_libdynlibdiff_la_rpath) $(libdynlibdiff_la_OBJECTS) $(libdynlibdiff_la_LIBADD) # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1333,7 +1334,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am index 4b54960..bdb65fa 100644 --- a/tools/h5dump/Makefile.am +++ b/tools/h5dump/Makefile.am @@ -50,12 +50,15 @@ h5dump_SOURCES=h5dump.c h5dump_ddl.c h5dump_xml.c if HAVE_SHARED_CONDITIONAL # Build it as shared library if configure is enabled for shared library. - lib_LTLIBRARIES=libdynlibdump.la + dyn_LTLIBRARIES=libdynlibdump.la libdynlibdump_la_SOURCES=dynlib_dump.c libdynlibdump_la_LDFLAGS = -avoid-version -module -shared -export-dynamic -install-exec-hook: - $(RM) $(DESTDIR)$(libdir)/*dynlib* +libdynlibdump.la: $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_DEPENDENCIES) $(EXTRA_libdynlibdump_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlibdump_la_LINK) $(am_libdynlibdump_la_rpath) $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_LIBADD) + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* endif # Temporary files. *.h5 are generated by h5dumpgentest. They should diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 7909889..e878db2 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -149,8 +149,8 @@ am__uninstall_files_from_dir = { \ || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ $(am__cd) "$$dir" && rm -f $$files; }; \ } -am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" -LTLIBRARIES = $(lib_LTLIBRARIES) +am__installdirs = "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)" +LTLIBRARIES = $(dyn_LTLIBRARIES) libdynlibdump_la_LIBADD = am__libdynlibdump_la_SOURCES_DIST = dynlib_dump.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibdump_la_OBJECTS = \ @@ -165,7 +165,7 @@ libdynlibdump_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \ $(AM_CFLAGS) $(CFLAGS) $(libdynlibdump_la_LDFLAGS) $(LDFLAGS) \ -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibdump_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) am__EXEEXT_1 = h5dumpgentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) binread_SOURCES = binread.c @@ -697,6 +697,9 @@ TRACE = perl $(top_srcdir)/bin/trace # .chklog files are output from those tests. # *.clog and *.clog2 are from the MPE option. +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* + # Temporary files. *.h5 are generated by h5dumpgentest. They should # copied to the testfiles/ directory if update is required. CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin @@ -716,12 +719,12 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) # Source files for the program h5dump_SOURCES = h5dump.c h5dump_ddl.c h5dump_xml.c -@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlibdump.la +@HAVE_SHARED_CONDITIONAL_TRUE@dyn_LTLIBRARIES = libdynlibdump.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdump_la_SOURCES = dynlib_dump.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdump_la_LDFLAGS = -avoid-version -module -shared -export-dynamic DISTCLEANFILES = testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -729,10 +732,12 @@ DISTCLEANFILES = testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -783,33 +788,33 @@ testh5dumppbits.sh: $(top_builddir)/config.status $(srcdir)/testh5dumppbits.sh.i testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ -install-libLTLIBRARIES: $(lib_LTLIBRARIES) +install-dynLTLIBRARIES: $(dyn_LTLIBRARIES) @$(NORMAL_INSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ list2="$$list2 $$p"; \ else :; fi; \ done; \ test -z "$$list2" || { \ - echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ - $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + echo " $(MKDIR_P) '$(DESTDIR)$(dyndir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(dyndir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(dyndir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(dyndir)"; \ } -uninstall-libLTLIBRARIES: +uninstall-dynLTLIBRARIES: @$(NORMAL_UNINSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ for p in $$list; do \ $(am__strip_dir) \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(dyndir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(dyndir)/$$f"; \ done -clean-libLTLIBRARIES: - -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; \ +clean-dynLTLIBRARIES: + -test -z "$(dyn_LTLIBRARIES)" || rm -f $(dyn_LTLIBRARIES) + @list='$(dyn_LTLIBRARIES)'; \ locs=`for p in $$list; do echo $$p; done | \ sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ sort -u`; \ @@ -818,8 +823,8 @@ clean-libLTLIBRARIES: rm -f $${locs}; \ } -libdynlibdump.la: $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_DEPENDENCIES) $(EXTRA_libdynlibdump_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlibdump_la_LINK) $(am_libdynlibdump_la_rpath) $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlibdump.la: $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_DEPENDENCIES) $(EXTRA_libdynlibdump_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlibdump_la_LINK) $(am_libdynlibdump_la_rpath) $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_LIBADD) $(LIBS) install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ @@ -1170,10 +1175,8 @@ check-am: all-am $(MAKE) $(AM_MAKEFLAGS) check-TESTS check: check-am all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local -install-binPROGRAMS: install-libLTLIBRARIES - installdirs: - for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"; do \ + for dir in "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -1210,11 +1213,10 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." -@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am -clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libLTLIBRARIES clean-libtool mostlyclean-am +clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-dynLTLIBRARIES \ + clean-generic clean-libtool mostlyclean-am distclean: distclean-am -rm -rf ./$(DEPDIR) @@ -1234,15 +1236,14 @@ info: info-am info-am: -install-data-am: +install-data-am: install-dynLTLIBRARIES install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-binPROGRAMS install-libLTLIBRARIES - @$(NORMAL_INSTALL) - $(MAKE) $(AM_MAKEFLAGS) install-exec-hook +install-exec-am: install-binPROGRAMS + install-html: install-html-am install-html-am: @@ -1281,26 +1282,26 @@ ps: ps-am ps-am: -uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES +uninstall-am: uninstall-binPROGRAMS uninstall-dynLTLIBRARIES -.MAKE: check-am install-am install-exec-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \ check-am clean clean-binPROGRAMS clean-checkPROGRAMS \ - clean-generic clean-libLTLIBRARIES clean-libtool cscopelist-am \ + clean-dynLTLIBRARIES clean-generic clean-libtool cscopelist-am \ ctags ctags-am distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-exec-hook install-html \ - install-html-am install-info install-info-am \ - install-libLTLIBRARIES install-man install-pdf install-pdf-am \ - install-ps install-ps-am install-strip installcheck \ - installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \ - uninstall-binPROGRAMS uninstall-libLTLIBRARIES + install-dynLTLIBRARIES install-exec install-exec-am \ + install-html install-html-am install-info install-info-am \ + install-man install-pdf install-pdf-am install-ps \ + install-ps-am install-strip installcheck installcheck-am \ + installdirs maintainer-clean maintainer-clean-generic \ + mostlyclean mostlyclean-compile mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \ + recheck tags tags-am uninstall uninstall-am \ + uninstall-binPROGRAMS uninstall-dynLTLIBRARIES .PRECIOUS: Makefile @@ -1318,11 +1319,12 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. -@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: -@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibdump.la: $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_DEPENDENCIES) $(EXTRA_libdynlibdump_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlibdump_la_LINK) $(am_libdynlibdump_la_rpath) $(libdynlibdump_la_OBJECTS) $(libdynlibdump_la_LIBADD) # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1330,7 +1332,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index 4c03689..4613104 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -689,7 +689,7 @@ h5import_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # All programs depend on the main hdf5 library and the tools library LDADD = $(LIBH5TOOLS) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -697,10 +697,12 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1228,6 +1230,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1235,7 +1238,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index d44ef43..08012bf 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -701,7 +701,7 @@ SCRIPT_DEPEND = h5jam$(EXEEXT) h5unjam$(EXEEXT) LDADD = $(LIBH5TOOLS) $(LIBHDF5) DISTCLEANFILES = testh5jam.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -709,10 +709,12 @@ DISTCLEANFILES = testh5jam.sh LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1249,6 +1251,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1256,7 +1259,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5ls/Makefile.am b/tools/h5ls/Makefile.am index bee5d79..f78e777 100644 --- a/tools/h5ls/Makefile.am +++ b/tools/h5ls/Makefile.am @@ -44,11 +44,15 @@ LDADD=$(LIBH5TOOLS) $(LIBHDF5) if HAVE_SHARED_CONDITIONAL # Build it as shared library if configure is enabled for shared library. - lib_LTLIBRARIES=libdynlibls.la + dyn_LTLIBRARIES=libdynlibls.la libdynlibls_la_SOURCES=dynlib_ls.c + libdynlibls_la_LDFLAGS = -avoid-version -module -shared -export-dynamic -install-exec-hook: - $(RM) $(DESTDIR)$(libdir)/*dynlib* +libdynlibls.la: $(libdynlibls_la_OBJECTS) $(libdynlibls_la_DEPENDENCIES) $(EXTRA_libdynlibls_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlibls_la_LINK) $(am_libdynlibls_la_rpath) $(libdynlibls_la_OBJECTS) $(libdynlibls_la_LIBADD) + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* endif DISTCLEANFILES=h5ls_plugin.sh diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 317fb8b..b9c3dda 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -147,8 +147,8 @@ am__uninstall_files_from_dir = { \ || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ $(am__cd) "$$dir" && rm -f $$files; }; \ } -am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" -LTLIBRARIES = $(lib_LTLIBRARIES) +am__installdirs = "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)" +LTLIBRARIES = $(dyn_LTLIBRARIES) libdynlibls_la_LIBADD = am__libdynlibls_la_SOURCES_DIST = dynlib_ls.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibls_la_OBJECTS = \ @@ -158,8 +158,12 @@ AM_V_lt = $(am__v_lt_@AM_V@) am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent am__v_lt_1 = +libdynlibls_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \ + $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \ + $(AM_CFLAGS) $(CFLAGS) $(libdynlibls_la_LDFLAGS) $(LDFLAGS) -o \ + $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibls_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) PROGRAMS = $(bin_PROGRAMS) h5ls_SOURCES = h5ls.c h5ls_OBJECTS = h5ls.$(OBJEXT) @@ -687,11 +691,15 @@ h5ls_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # All programs depend on the hdf5 and h5tools libraries LDADD = $(LIBH5TOOLS) $(LIBHDF5) -@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlibls.la +@HAVE_SHARED_CONDITIONAL_TRUE@dyn_LTLIBRARIES = libdynlibls.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibls_la_SOURCES = dynlib_ls.c +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibls_la_LDFLAGS = -avoid-version -module -shared -export-dynamic + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* DISTCLEANFILES = h5ls_plugin.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -699,10 +707,12 @@ DISTCLEANFILES = h5ls_plugin.sh LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -749,33 +759,33 @@ h5ls_plugin.sh: $(top_builddir)/config.status $(srcdir)/h5ls_plugin.sh.in testh5ls.sh: $(top_builddir)/config.status $(srcdir)/testh5ls.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ -install-libLTLIBRARIES: $(lib_LTLIBRARIES) +install-dynLTLIBRARIES: $(dyn_LTLIBRARIES) @$(NORMAL_INSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ list2="$$list2 $$p"; \ else :; fi; \ done; \ test -z "$$list2" || { \ - echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ - $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + echo " $(MKDIR_P) '$(DESTDIR)$(dyndir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(dyndir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(dyndir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(dyndir)"; \ } -uninstall-libLTLIBRARIES: +uninstall-dynLTLIBRARIES: @$(NORMAL_UNINSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ for p in $$list; do \ $(am__strip_dir) \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(dyndir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(dyndir)/$$f"; \ done -clean-libLTLIBRARIES: - -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; \ +clean-dynLTLIBRARIES: + -test -z "$(dyn_LTLIBRARIES)" || rm -f $(dyn_LTLIBRARIES) + @list='$(dyn_LTLIBRARIES)'; \ locs=`for p in $$list; do echo $$p; done | \ sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ sort -u`; \ @@ -784,8 +794,8 @@ clean-libLTLIBRARIES: rm -f $${locs}; \ } -libdynlibls.la: $(libdynlibls_la_OBJECTS) $(libdynlibls_la_DEPENDENCIES) $(EXTRA_libdynlibls_la_DEPENDENCIES) - $(AM_V_CCLD)$(LINK) $(am_libdynlibls_la_rpath) $(libdynlibls_la_OBJECTS) $(libdynlibls_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlibls.la: $(libdynlibls_la_OBJECTS) $(libdynlibls_la_DEPENDENCIES) $(EXTRA_libdynlibls_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlibls_la_LINK) $(am_libdynlibls_la_rpath) $(libdynlibls_la_OBJECTS) $(libdynlibls_la_LIBADD) $(LIBS) install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ @@ -1108,10 +1118,8 @@ check-am: all-am $(MAKE) $(AM_MAKEFLAGS) check-TESTS check: check-am all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local -install-binPROGRAMS: install-libLTLIBRARIES - installdirs: - for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"; do \ + for dir in "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -1148,10 +1156,9 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." -@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am -clean-am: clean-binPROGRAMS clean-generic clean-libLTLIBRARIES \ +clean-am: clean-binPROGRAMS clean-dynLTLIBRARIES clean-generic \ clean-libtool mostlyclean-am distclean: distclean-am @@ -1172,15 +1179,14 @@ info: info-am info-am: -install-data-am: +install-data-am: install-dynLTLIBRARIES install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-binPROGRAMS install-libLTLIBRARIES - @$(NORMAL_INSTALL) - $(MAKE) $(AM_MAKEFLAGS) install-exec-hook +install-exec-am: install-binPROGRAMS + install-html: install-html-am install-html-am: @@ -1219,26 +1225,26 @@ ps: ps-am ps-am: -uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES +uninstall-am: uninstall-binPROGRAMS uninstall-dynLTLIBRARIES -.MAKE: check-am install-am install-exec-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \ - check-am clean clean-binPROGRAMS clean-generic \ - clean-libLTLIBRARIES clean-libtool cscopelist-am ctags \ - ctags-am distclean distclean-compile distclean-generic \ + check-am clean clean-binPROGRAMS clean-dynLTLIBRARIES \ + clean-generic clean-libtool cscopelist-am ctags ctags-am \ + distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-exec-hook install-html \ - install-html-am install-info install-info-am \ - install-libLTLIBRARIES install-man install-pdf install-pdf-am \ - install-ps install-ps-am install-strip installcheck \ - installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \ - uninstall-binPROGRAMS uninstall-libLTLIBRARIES + install-dynLTLIBRARIES install-exec install-exec-am \ + install-html install-html-am install-info install-info-am \ + install-man install-pdf install-pdf-am install-ps \ + install-ps-am install-strip installcheck installcheck-am \ + installdirs maintainer-clean maintainer-clean-generic \ + mostlyclean mostlyclean-compile mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \ + recheck tags tags-am uninstall uninstall-am \ + uninstall-binPROGRAMS uninstall-dynLTLIBRARIES .PRECIOUS: Makefile @@ -1256,11 +1262,12 @@ help: @HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. -@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: -@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibls.la: $(libdynlibls_la_OBJECTS) $(libdynlibls_la_DEPENDENCIES) $(EXTRA_libdynlibls_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlibls_la_LINK) $(am_libdynlibls_la_rpath) $(libdynlibls_la_OBJECTS) $(libdynlibls_la_LIBADD) # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1268,7 +1275,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am index 83e94f6..d7690a8 100644 --- a/tools/h5repack/Makefile.am +++ b/tools/h5repack/Makefile.am @@ -63,14 +63,19 @@ h5repack.sh.chkexe_: h5repacktst.chkexe_ if HAVE_SHARED_CONDITIONAL # Build it as shared library if configure is enabled for shared library. - lib_LTLIBRARIES=libdynlibadd.la libdynlibvers.la + dyn_LTLIBRARIES=libdynlibadd.la libdynlibvers.la libdynlibadd_la_SOURCES=dynlib_rpk.c libdynlibvers_la_SOURCES=dynlib_vrpk.c libdynlibadd_la_LDFLAGS = -avoid-version -module -shared -export-dynamic libdynlibvers_la_LDFLAGS = -avoid-version -module -shared -export-dynamic -install-exec-hook: - $(RM) $(DESTDIR)$(libdir)/*dynlib* +libdynlibadd.la: $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_DEPENDENCIES) $(EXTRA_libdynlibadd_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlibadd_la_LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) +libdynlibvers.la: $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_DEPENDENCIES) $(EXTRA_libdynlibvers_la_DEPENDENCIES) + $(AM_V_CCLD)$(libdynlibvers_la_LINK) $(am_libdynlibvers_la_rpath) $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_LIBADD) + +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* endif # Temporary files. *.h5 are generated by h5repack. They should diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 2045631..a0a4a4b 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -149,8 +149,8 @@ am__uninstall_files_from_dir = { \ || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ $(am__cd) "$$dir" && rm -f $$files; }; \ } -am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" -LTLIBRARIES = $(lib_LTLIBRARIES) +am__installdirs = "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)" +LTLIBRARIES = $(dyn_LTLIBRARIES) libdynlibadd_la_LIBADD = am__libdynlibadd_la_SOURCES_DIST = dynlib_rpk.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibadd_la_OBJECTS = \ @@ -165,7 +165,7 @@ libdynlibadd_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \ $(AM_CFLAGS) $(CFLAGS) $(libdynlibadd_la_LDFLAGS) $(LDFLAGS) \ -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibadd_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) libdynlibvers_la_LIBADD = am__libdynlibvers_la_SOURCES_DIST = dynlib_vrpk.c @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibvers_la_OBJECTS = \ @@ -176,7 +176,7 @@ libdynlibvers_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \ $(AM_CFLAGS) $(CFLAGS) $(libdynlibvers_la_LDFLAGS) $(LDFLAGS) \ -o $@ @HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibvers_la_rpath = -rpath \ -@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(dyndir) am__EXEEXT_1 = h5repacktst$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS) am__objects_1 = h5repack.$(OBJEXT) h5repack_copy.$(OBJEXT) \ @@ -715,6 +715,9 @@ TRACE = perl $(top_srcdir)/bin/trace # .chklog files are output from those tests. # *.clog and *.clog2 are from the MPE option. +#install-exec-hook: +# $(RM) $(DESTDIR)$(libdir)/*dynlib* + # Temporary files. *.h5 are generated by h5repack. They should # copied to the testfiles/ directory if update is required. CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin \ @@ -740,14 +743,14 @@ COMMON_SOURCES = h5repack.c h5repack_copy.c h5repack_filters.c \ h5repack_SOURCES = $(COMMON_SOURCES) h5repack_main.c h5repacktst_SOURCES = $(COMMON_SOURCES) h5repacktst.c testh5repack_detect_szip_SOURCES = testh5repack_detect_szip.c -@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlibadd.la libdynlibvers.la +@HAVE_SHARED_CONDITIONAL_TRUE@dyn_LTLIBRARIES = libdynlibadd.la libdynlibvers.la @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibadd_la_SOURCES = dynlib_rpk.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibvers_la_SOURCES = dynlib_vrpk.c @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibadd_la_LDFLAGS = -avoid-version -module -shared -export-dynamic @HAVE_SHARED_CONDITIONAL_TRUE@libdynlibvers_la_LDFLAGS = -avoid-version -module -shared -export-dynamic DISTCLEANFILES = h5repack.sh h5repack_plugin.sh -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -755,10 +758,12 @@ DISTCLEANFILES = h5repack.sh h5repack_plugin.sh LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -805,33 +810,33 @@ h5repack.sh: $(top_builddir)/config.status $(srcdir)/h5repack.sh.in h5repack_plugin.sh: $(top_builddir)/config.status $(srcdir)/h5repack_plugin.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ -install-libLTLIBRARIES: $(lib_LTLIBRARIES) +install-dynLTLIBRARIES: $(dyn_LTLIBRARIES) @$(NORMAL_INSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ list2="$$list2 $$p"; \ else :; fi; \ done; \ test -z "$$list2" || { \ - echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ - $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + echo " $(MKDIR_P) '$(DESTDIR)$(dyndir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(dyndir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(dyndir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(dyndir)"; \ } -uninstall-libLTLIBRARIES: +uninstall-dynLTLIBRARIES: @$(NORMAL_UNINSTALL) - @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + @list='$(dyn_LTLIBRARIES)'; test -n "$(dyndir)" || list=; \ for p in $$list; do \ $(am__strip_dir) \ - echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ - $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(dyndir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(dyndir)/$$f"; \ done -clean-libLTLIBRARIES: - -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; \ +clean-dynLTLIBRARIES: + -test -z "$(dyn_LTLIBRARIES)" || rm -f $(dyn_LTLIBRARIES) + @list='$(dyn_LTLIBRARIES)'; \ locs=`for p in $$list; do echo $$p; done | \ sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ sort -u`; \ @@ -840,11 +845,11 @@ clean-libLTLIBRARIES: rm -f $${locs}; \ } -libdynlibadd.la: $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_DEPENDENCIES) $(EXTRA_libdynlibadd_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlibadd_la_LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlibadd.la: $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_DEPENDENCIES) $(EXTRA_libdynlibadd_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlibadd_la_LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) $(LIBS) -libdynlibvers.la: $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_DEPENDENCIES) $(EXTRA_libdynlibvers_la_DEPENDENCIES) - $(AM_V_CCLD)$(libdynlibvers_la_LINK) $(am_libdynlibvers_la_rpath) $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_LIBADD) $(LIBS) +@HAVE_SHARED_CONDITIONAL_FALSE@libdynlibvers.la: $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_DEPENDENCIES) $(EXTRA_libdynlibvers_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_FALSE@ $(AM_V_CCLD)$(libdynlibvers_la_LINK) $(am_libdynlibvers_la_rpath) $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_LIBADD) $(LIBS) install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ @@ -1210,10 +1215,8 @@ check-am: all-am $(MAKE) $(AM_MAKEFLAGS) check-TESTS check: check-am all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local -install-binPROGRAMS: install-libLTLIBRARIES - installdirs: - for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"; do \ + for dir in "$(DESTDIR)$(dyndir)" "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -1250,11 +1253,10 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." -@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am -clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libLTLIBRARIES clean-libtool clean-noinstPROGRAMS \ +clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-dynLTLIBRARIES \ + clean-generic clean-libtool clean-noinstPROGRAMS \ mostlyclean-am distclean: distclean-am @@ -1275,15 +1277,14 @@ info: info-am info-am: -install-data-am: +install-data-am: install-dynLTLIBRARIES install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-binPROGRAMS install-libLTLIBRARIES - @$(NORMAL_INSTALL) - $(MAKE) $(AM_MAKEFLAGS) install-exec-hook +install-exec-am: install-binPROGRAMS + install-html: install-html-am install-html-am: @@ -1322,27 +1323,27 @@ ps: ps-am ps-am: -uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES +uninstall-am: uninstall-binPROGRAMS uninstall-dynLTLIBRARIES -.MAKE: check-am install-am install-exec-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \ check-am clean clean-binPROGRAMS clean-checkPROGRAMS \ - clean-generic clean-libLTLIBRARIES clean-libtool \ + clean-dynLTLIBRARIES clean-generic clean-libtool \ clean-noinstPROGRAMS cscopelist-am ctags ctags-am distclean \ distclean-compile distclean-generic distclean-libtool \ distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-binPROGRAMS install-data \ - install-data-am install-dvi install-dvi-am install-exec \ - install-exec-am install-exec-hook install-html install-html-am \ - install-info install-info-am install-libLTLIBRARIES \ + install-data-am install-dvi install-dvi-am \ + install-dynLTLIBRARIES install-exec install-exec-am \ + install-html install-html-am install-info install-info-am \ install-man install-pdf install-pdf-am install-ps \ install-ps-am install-strip installcheck installcheck-am \ installdirs maintainer-clean maintainer-clean-generic \ mostlyclean mostlyclean-compile mostlyclean-generic \ mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \ recheck tags tags-am uninstall uninstall-am \ - uninstall-binPROGRAMS uninstall-libLTLIBRARIES + uninstall-binPROGRAMS uninstall-dynLTLIBRARIES .PRECIOUS: Makefile @@ -1363,11 +1364,14 @@ h5repack.sh.chkexe_: h5repacktst.chkexe_ @HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. -@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: -@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibadd.la: $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_DEPENDENCIES) $(EXTRA_libdynlibadd_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlibadd_la_LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibvers.la: $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_DEPENDENCIES) $(EXTRA_libdynlibvers_la_DEPENDENCIES) +@HAVE_SHARED_CONDITIONAL_TRUE@ $(AM_V_CCLD)$(libdynlibvers_la_LINK) $(am_libdynlibvers_la_rpath) $(libdynlibvers_la_OBJECTS) $(libdynlibvers_la_LIBADD) # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1375,7 +1379,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 4807da1..68185c1 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -700,7 +700,7 @@ DISTCLEANFILES = testh5stat.sh # All programs rely on hdf5 library and h5tools library LDADD = $(LIBH5TOOLS) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -708,10 +708,12 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1277,6 +1279,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1284,7 +1287,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 5d41cb7..b4c2491 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -678,7 +678,7 @@ TEST_PROG = # to build 'libh5tools.la', but not '../../tools/lib/libh5tools.la'. LDADD = libh5tools.la $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -686,10 +686,12 @@ LDADD = libh5tools.la $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1173,6 +1175,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1180,7 +1183,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index dfbdc2a..96d34ae 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -732,7 +732,7 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) # named h5pcc if hdf5 is being built in parallel mode. @BUILD_PARALLEL_CONDITIONAL_TRUE@H5CC_NAME = h5pcc -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -740,10 +740,12 @@ LDADD = $(LIBH5TOOLS) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1351,6 +1353,7 @@ h5redeploy: h5redeploy.in # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1358,7 +1361,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in index f3e07b0..63dde78 100644 --- a/tools/perform/Makefile.in +++ b/tools/perform/Makefile.in @@ -739,7 +739,7 @@ iopipe_LDADD = $(LIBH5TEST) $(LIBHDF5) zip_perf_LDADD = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) perf_meta_LDADD = $(LIBH5TEST) $(LIBHDF5) -# Automake needs to be taught how to build lib, progs, and tests targets. +# Automake needs to be taught how to build lib, dyn, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and # EXTRA_TEST variables are supplied to allow the user to force targets to @@ -747,10 +747,12 @@ perf_meta_LDADD = $(LIBH5TEST) $(LIBHDF5) LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) +DYN = $(dyn_LTLIBRARIES) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +dyndir = $(libdir) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1344,6 +1346,7 @@ help: # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. +build-dyn: $(DYN) build-lib: $(LIB) build-progs: $(LIB) $(PROGS) build-tests: $(LIB) $(PROGS) $(chk_TESTS) @@ -1351,7 +1354,7 @@ build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else # in the directory (e.g., for Fortran type detection) -lib progs tests check-s check-p :: $(BUILT_SOURCES) +lib dyn progs tests check-s check-p :: $(BUILT_SOURCES) @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; @for d in X $(SUBDIRS); do \ if test $$d != X && test $$d != .; then \ |