diff options
author | Albert Cheng <acheng@hdfgroup.org> | 2010-05-13 20:49:31 (GMT) |
---|---|---|
committer | Albert Cheng <acheng@hdfgroup.org> | 2010-05-13 20:49:31 (GMT) |
commit | 5f2cf7e80c30200be4d975117d7d98249416b9e4 (patch) | |
tree | df6e70421921eedf1db9d0637542e40915b4e500 | |
parent | 26205360a42b6a579f62a25810f34813582c84ab (diff) | |
download | hdf5-5f2cf7e80c30200be4d975117d7d98249416b9e4.zip hdf5-5f2cf7e80c30200be4d975117d7d98249416b9e4.tar.gz hdf5-5f2cf7e80c30200be4d975117d7d98249416b9e4.tar.bz2 |
[svn-r18794] Enhancement 1853:
Install packed-bits feature for h5dump.
testfiles/packedbits.h5:
New HDF5 test data file. Generated by h5dump/h5dumpgentest.
testfiles/tpbitsLengthPositive.ddl:
testfiles/tpbitsMaxExceeded.ddl:
testfiles/tpbitsSigned.ddl:
testfiles/tpbitsOffsetNegative.ddl:
testfiles/tpbitsUnsigned.ddl:
testfiles/tpbitsMax.ddl:
testfiles/tpbitsIncomplete.ddl:
testfiles/tpbitsOverlapped.ddl:
testfiles/tpbitsLengthExceeded.ddl:
testfiles/tpbitsOffsetExceeded.ddl:
Expected output files created to test various
components of the packed-bits feature.
testfiles/tpackedbits2.ddl:
testfiles/tpackedbits.ddl:
Previous output files no longer used.
Tested: albertPax (linux)
-rw-r--r-- | tools/testfiles/packedbits.h5 | bin | 0 -> 7776 bytes | |||
-rw-r--r-- | tools/testfiles/tpackedbits.ddl | 22 | ||||
-rw-r--r-- | tools/testfiles/tpackedbits2.ddl | 35 | ||||
-rw-r--r-- | tools/testfiles/tpbitsIncomplete.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsLengthExceeded.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsLengthPositive.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsMax.ddl | 97 | ||||
-rw-r--r-- | tools/testfiles/tpbitsMaxExceeded.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsOffsetExceeded.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsOffsetNegative.ddl | 90 | ||||
-rw-r--r-- | tools/testfiles/tpbitsOverlapped.ddl | 53 | ||||
-rw-r--r-- | tools/testfiles/tpbitsSigned.ddl | 31 | ||||
-rw-r--r-- | tools/testfiles/tpbitsUnsigned.ddl | 31 |
13 files changed, 752 insertions, 57 deletions
diff --git a/tools/testfiles/packedbits.h5 b/tools/testfiles/packedbits.h5 Binary files differnew file mode 100644 index 0000000..3db1883 --- /dev/null +++ b/tools/testfiles/packedbits.h5 diff --git a/tools/testfiles/tpackedbits.ddl b/tools/testfiles/tpackedbits.ddl deleted file mode 100644 index 2f1e9a1..0000000 --- a/tools/testfiles/tpackedbits.ddl +++ /dev/null @@ -1,22 +0,0 @@ -############################# -Expected output for 'h5dump -d /dset1 -M 0,2 tdset.h5' -############################# -HDF5 "tdset.h5" { -DATASET "/dset1" { - DATATYPE H5T_STD_I32BE - DATASPACE SIMPLE { ( 10, 20 ) / ( 10, 20 ) } - PACKED_BITS OFFSET=0 LENGTH=2 - DATA { - (0,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (1,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, - (2,0): 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, - (3,0): 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, - (4,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (5,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, - (6,0): 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, - (7,0): 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, - (8,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (9,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0 - } -} -} diff --git a/tools/testfiles/tpackedbits2.ddl b/tools/testfiles/tpackedbits2.ddl deleted file mode 100644 index 4f11bbe..0000000 --- a/tools/testfiles/tpackedbits2.ddl +++ /dev/null @@ -1,35 +0,0 @@ -############################# -Expected output for 'h5dump -d /dset1 -M 0,2,2,1 tdset.h5' -############################# -HDF5 "tdset.h5" { -DATASET "/dset1" { - DATATYPE H5T_STD_I32BE - DATASPACE SIMPLE { ( 10, 20 ) / ( 10, 20 ) } - PACKED_BITS OFFSET=0 LENGTH=2 - DATA { - (0,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (1,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, - (2,0): 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, - (3,0): 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, - (4,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (5,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, - (6,0): 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, - (7,0): 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, - (8,0): 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, - (9,0): 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0, 1, 2, 3, 0 - } - PACKED_BITS OFFSET=2 LENGTH=1 - DATA { - (0,0): 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, - (1,0): 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, - (2,0): 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, - (3,0): 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, - (4,0): 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, - (5,0): 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, - (6,0): 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, - (7,0): 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, - (8,0): 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, - (9,0): 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1 - } -} -} diff --git a/tools/testfiles/tpbitsIncomplete.ddl b/tools/testfiles/tpbitsIncomplete.ddl new file mode 100644 index 0000000..dbde4f5 --- /dev/null +++ b/tools/testfiles/tpbitsIncomplete.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 0,2,2,1,0,2,2, packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Bad mask list(0,2,2,1,0,2,2,) diff --git a/tools/testfiles/tpbitsLengthExceeded.ddl b/tools/testfiles/tpbitsLengthExceeded.ddl new file mode 100644 index 0000000..6b02648 --- /dev/null +++ b/tools/testfiles/tpbitsLengthExceeded.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 2,7 packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Packed Bit offset+length value(9) too large. Max is 8 diff --git a/tools/testfiles/tpbitsLengthPositive.ddl b/tools/testfiles/tpbitsLengthPositive.ddl new file mode 100644 index 0000000..0f4093e --- /dev/null +++ b/tools/testfiles/tpbitsLengthPositive.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 4,0 packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Packed Bit length value(0) must be positive. diff --git a/tools/testfiles/tpbitsMax.ddl b/tools/testfiles/tpbitsMax.ddl new file mode 100644 index 0000000..a4528ff --- /dev/null +++ b/tools/testfiles/tpbitsMax.ddl @@ -0,0 +1,97 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5' +############################# +HDF5 "packedbits.h5" { +DATASET "/DS08BITS" { + DATATYPE H5T_STD_I8LE + DATASPACE SIMPLE { ( 8, 8 ) / ( 8, 8 ) } + PACKED_BITS OFFSET=0 LENGTH=1 + DATA { + (0,0): 1, 0, 0, 0, 0, 0, 0, 0, + (1,0): 0, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=1 LENGTH=1 + DATA { + (0,0): 1, 1, 0, 0, 0, 0, 0, 0, + (1,0): 1, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=2 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 0, 0, 0, 0, 0, + (1,0): 1, 1, 0, 0, 0, 0, 0, 0, + (2,0): 1, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=3 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 1, 0, 0, 0, 0, + (1,0): 1, 1, 1, 0, 0, 0, 0, 0, + (2,0): 1, 1, 0, 0, 0, 0, 0, 0, + (3,0): 1, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=4 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 1, 1, 0, 0, 0, + (1,0): 1, 1, 1, 1, 0, 0, 0, 0, + (2,0): 1, 1, 1, 0, 0, 0, 0, 0, + (3,0): 1, 1, 0, 0, 0, 0, 0, 0, + (4,0): 1, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=5 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 1, 1, 1, 0, 0, + (1,0): 1, 1, 1, 1, 1, 0, 0, 0, + (2,0): 1, 1, 1, 1, 0, 0, 0, 0, + (3,0): 1, 1, 1, 0, 0, 0, 0, 0, + (4,0): 1, 1, 0, 0, 0, 0, 0, 0, + (5,0): 1, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=6 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 1, 1, 1, 1, 0, + (1,0): 1, 1, 1, 1, 1, 1, 0, 0, + (2,0): 1, 1, 1, 1, 1, 0, 0, 0, + (3,0): 1, 1, 1, 1, 0, 0, 0, 0, + (4,0): 1, 1, 1, 0, 0, 0, 0, 0, + (5,0): 1, 1, 0, 0, 0, 0, 0, 0, + (6,0): 1, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=7 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 1, 1, 1, 1, 1, + (1,0): 1, 1, 1, 1, 1, 1, 1, 0, + (2,0): 1, 1, 1, 1, 1, 1, 0, 0, + (3,0): 1, 1, 1, 1, 1, 0, 0, 0, + (4,0): 1, 1, 1, 1, 0, 0, 0, 0, + (5,0): 1, 1, 1, 0, 0, 0, 0, 0, + (6,0): 1, 1, 0, 0, 0, 0, 0, 0, + (7,0): 1, 0, 0, 0, 0, 0, 0, 0 + } +} +} diff --git a/tools/testfiles/tpbitsMaxExceeded.ddl b/tools/testfiles/tpbitsMaxExceeded.ddl new file mode 100644 index 0000000..01e854d --- /dev/null +++ b/tools/testfiles/tpbitsMaxExceeded.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Too many masks requested (max. 8). Mask list(0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1) diff --git a/tools/testfiles/tpbitsOffsetExceeded.ddl b/tools/testfiles/tpbitsOffsetExceeded.ddl new file mode 100644 index 0000000..cf7055e --- /dev/null +++ b/tools/testfiles/tpbitsOffsetExceeded.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 8,1 packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Packed Bit offset value(8) must be between 0 and 7 diff --git a/tools/testfiles/tpbitsOffsetNegative.ddl b/tools/testfiles/tpbitsOffsetNegative.ddl new file mode 100644 index 0000000..b514bca --- /dev/null +++ b/tools/testfiles/tpbitsOffsetNegative.ddl @@ -0,0 +1,90 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M -1,1 packedbits.h5' +############################# +usage: h5dump [OPTIONS] file + OPTIONS + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit + -a P, --attribute=P Print the specified attribute + -d P, --dataset=P Print the specified dataset + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value + -f D, --filedriver=D Specify which driver to open the file with + -g P, --group=P Print the specified group and all members + -l P, --soft-link=P Print the value(s) of the specified soft link + -o F, --output=F Output raw data into file F + -b B, --binary=B Binary file output, of form B + -t P, --datatype=P Print the specified named datatype + -w N, --width=N Set the number of columns of output. A value of 0 (zero) + sets the number of columns to the maximum (65535). + Default width is 80 columns. + -m T, --format=T Set the floating point output format + -q Q, --sort_by=Q Sort groups and attributes by index Q + -z Z, --sort_order=Z Sort groups and attributes by order Z + -M M, --packedbits=M Print packed bits using mask format M for dataset P given + in option d. Where M is (offset,length)[,(offset,length)]. + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD + -D U, --xml-dtd=U Use the DTD or schema at U + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + ":": no namespace, default: "hdf5:" + E.g., to dump a file called `-f', use h5dump -- -f + + Subsetting is available by using the following options with a dataset + attribute. Subsetting is done by selecting a hyperslab from the data. + Thus, the options mirror those for performing a hyperslab selection. + One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting. + The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in + each dimension. START is optional and will default to 0 in each dimension. + + -s START, --start=START Offset of start of subsetting selection + -S STRIDE, --stride=STRIDE Hyperslab stride + -c COUNT, --count=COUNT Number of blocks to include in selection + -k BLOCK, --block=BLOCK Size of block in hyperslab + START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the + number of dimensions in the dataspace being queried + + D - is the file driver to use in opening the file. Acceptable values + are "sec2", "family", "split", "multi", "direct", and "stream". Without + the file driver flag, the file will be opened with each driver in + turn and in the order specified above until one driver succeeds + in opening the file. + F - is a filename. + P - is the full path from the root group to the object. + N - is an integer greater than 1. + T - is a string containing the floating point format, e.g '%.3f' + U - is a URI reference (as defined in [IETF RFC 2396], + updated by [IETF RFC 2732]) + B - is the form of binary output: NATIVE for a memory type, FILE for the + file type, LE or BE for pre-existing little or big endian types. + Must be used with -o (output file) and it is recommended that + -d (dataset) is used. B is an optional argument, defaults to NATIVE + Q - is the sort index type. It can be "creation_order" or "name" (default) + Z - is the sort order type. It can be "descending" or "ascending" (default) + M - is a paired list of integers the first number of which is the offset and the + second number is the length of the its being queried + + Examples: + + 1) Attribute foo of the group /bar_none in file quux.h5 + + h5dump -a /bar_none/foo quux.h5 + + 2) Selecting a subset from dataset /foo in file quux.h5 + + h5dump -d /foo -s "0,1" -S "1,1" -c "2,3" -k "2,2" quux.h5 + + 3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin' + using a little-endian type + + h5dump -d /dset -b LE -o out.bin quux.h5 + +h5dump error: Bad mask list(-1,1) diff --git a/tools/testfiles/tpbitsOverlapped.ddl b/tools/testfiles/tpbitsOverlapped.ddl new file mode 100644 index 0000000..2814c4b --- /dev/null +++ b/tools/testfiles/tpbitsOverlapped.ddl @@ -0,0 +1,53 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 0,1,1,1,2,1,0,3 packedbits.h5' +############################# +HDF5 "packedbits.h5" { +DATASET "/DS08BITS" { + DATATYPE H5T_STD_I8LE + DATASPACE SIMPLE { ( 8, 8 ) / ( 8, 8 ) } + PACKED_BITS OFFSET=0 LENGTH=1 + DATA { + (0,0): 1, 0, 0, 0, 0, 0, 0, 0, + (1,0): 0, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=1 LENGTH=1 + DATA { + (0,0): 1, 1, 0, 0, 0, 0, 0, 0, + (1,0): 1, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=2 LENGTH=1 + DATA { + (0,0): 1, 1, 1, 0, 0, 0, 0, 0, + (1,0): 1, 1, 0, 0, 0, 0, 0, 0, + (2,0): 1, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=0 LENGTH=3 + DATA { + (0,0): 7, 6, 4, 0, 0, 0, 0, 0, + (1,0): 6, 4, 0, 0, 0, 0, 0, 0, + (2,0): 4, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } +} +} diff --git a/tools/testfiles/tpbitsSigned.ddl b/tools/testfiles/tpbitsSigned.ddl new file mode 100644 index 0000000..7db3b32 --- /dev/null +++ b/tools/testfiles/tpbitsSigned.ddl @@ -0,0 +1,31 @@ +############################# +Expected output for 'h5dump -d /DS08BITS -M 0,2,2,6 packedbits.h5' +############################# +HDF5 "packedbits.h5" { +DATASET "/DS08BITS" { + DATATYPE H5T_STD_I8LE + DATASPACE SIMPLE { ( 8, 8 ) / ( 8, 8 ) } + PACKED_BITS OFFSET=0 LENGTH=2 + DATA { + (0,0): 3, 2, 0, 0, 0, 0, 0, 0, + (1,0): 2, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=2 LENGTH=6 + DATA { + (0,0): 63, 63, 63, 62, 60, 56, 48, 32, + (1,0): 63, 63, 62, 60, 56, 48, 32, 0, + (2,0): 63, 62, 60, 56, 48, 32, 0, 0, + (3,0): 62, 60, 56, 48, 32, 0, 0, 0, + (4,0): 60, 56, 48, 32, 0, 0, 0, 0, + (5,0): 56, 48, 32, 0, 0, 0, 0, 0, + (6,0): 48, 32, 0, 0, 0, 0, 0, 0, + (7,0): 32, 0, 0, 0, 0, 0, 0, 0 + } +} +} diff --git a/tools/testfiles/tpbitsUnsigned.ddl b/tools/testfiles/tpbitsUnsigned.ddl new file mode 100644 index 0000000..0aaf40a --- /dev/null +++ b/tools/testfiles/tpbitsUnsigned.ddl @@ -0,0 +1,31 @@ +############################# +Expected output for 'h5dump -d /DU08BITS -M 0,2,2,6 packedbits.h5' +############################# +HDF5 "packedbits.h5" { +DATASET "/DU08BITS" { + DATATYPE H5T_STD_U8LE + DATASPACE SIMPLE { ( 8, 8 ) / ( 8, 8 ) } + PACKED_BITS OFFSET=0 LENGTH=2 + DATA { + (0,0): 3, 2, 0, 0, 0, 0, 0, 0, + (1,0): 2, 0, 0, 0, 0, 0, 0, 0, + (2,0): 0, 0, 0, 0, 0, 0, 0, 0, + (3,0): 0, 0, 0, 0, 0, 0, 0, 0, + (4,0): 0, 0, 0, 0, 0, 0, 0, 0, + (5,0): 0, 0, 0, 0, 0, 0, 0, 0, + (6,0): 0, 0, 0, 0, 0, 0, 0, 0, + (7,0): 0, 0, 0, 0, 0, 0, 0, 0 + } + PACKED_BITS OFFSET=2 LENGTH=6 + DATA { + (0,0): 63, 63, 63, 62, 60, 56, 48, 32, + (1,0): 63, 63, 62, 60, 56, 48, 32, 0, + (2,0): 63, 62, 60, 56, 48, 32, 0, 0, + (3,0): 62, 60, 56, 48, 32, 0, 0, 0, + (4,0): 60, 56, 48, 32, 0, 0, 0, 0, + (5,0): 56, 48, 32, 0, 0, 0, 0, 0, + (6,0): 48, 32, 0, 0, 0, 0, 0, 0, + (7,0): 32, 0, 0, 0, 0, 0, 0, 0 + } +} +} |