Merge issue 839 develop PRs to hdf5 1 10 - round 3 (#853)

* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Squashed commit of the following: commit e2578640fedf671cf11535cf22313dd477da1165 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jul 16 10:57:51 2021 -0500 Merge issue 839 changes to hdf5 1 10 (#841) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: Sean McBride <sean@rogue-research.com> commit 14794490ec522fbd3ac2faa6efa0920979490fbc Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jul 14 13:50:26 2021 -0500 Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Revert references to SIZE_MAX to ((size_t)(-1)) in C header defines used by c++ code that fail on centos7 when -std=c++11 is not set. * Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699) * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes pre-C99 build and header cruft (#700) * Committing clang-format changes * Removes pre-C99 build and header cruft * Assumes ANSI C headers exist * Assumes stdbool.h, stdint.h, and inttypes.h are present * Assumes the C++ compiler can handle stdint.h * Removes all work-arounds for missing functionality, especially stdbool.h * Formats source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Clean up type size checks in configure.ac (#702) * Removes some DEC Alpha cruft from H5detect and H5private.h (#708) * Cleans up hsize_t and haddr_t size guessing (#709) * Cleans up definitions of haddr_t and hsize_t + cruft removal * Formatted source * Revert "Cleans up hsize_t and haddr_t size guessing (#709)" This reverts commit be6ad9a7a0f2d08b670fa98bbdd1ba9530c9e89a. * Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719) * Removes clang-format comments from H5O.c call * Fixes bin/trace to correctly wrap lines near the clang-format limit * Removed unused variable from bin/trace Conflicts: bin/trace src/H5O.c * Fixes a segfault when H5Pset_mdc_log_options is called multiple times on a fapl (#601) * Committing clang-format changes * Fixes a segfault when H5Pset_mdc_log_options() is called multiple times An internal string is incorrectly freed when the API call is invoked multiple times on a property list, which will usually cause a segfault to occur. On the first call the log location is NULL so the problem doesn't occur. Fixes HDFFV-11239 * Fixes typos Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: release_docs/RELEASE.txt * Fix for a segfault when H5Pset_fapl_log is passed an invalid fapl ID (#607) * Committing clang-format changes * Fixes an issue where H5Pset_fapl_log sefaults when passed an invalid fapl ID This was due to a pointer-containing struct being memset after the first internal API call. If the first call failed, the error condition would check if the pointer was not NULL and then attempt to free it if not. This would lead to the freeing of a wild pointer if an invalid fapl ID were passed in. This was fixed by reordering the memset and adding a test to ensure the problem stays fixed. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: release_docs/RELEASE.txt * Fixes crashes when size_hint > UINT32_MAX is passed to H5Gcreate1 (#611) * Committing clang-format changes * Fixes incorrect size_hint handling in H5Gcreate1 * Updates the size hint type for group creation * Updates the RELEASE.txt note * Revert "Updates the RELEASE.txt note" This reverts commit 3df386acca806d652bbe2209f7c4503b30f068ff. * Reverts previous behavior to use a uint32_t struct field * Updates RELEASE.txt Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: src/H5Gdeprec.c * Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ (#726) * Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ Allows C++ library to be built on older versions of gcc. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: src/H5public.h * Remove conflicts from RELEASE.txt * Always include inttypes.h * Moves H5PacketTable default ctor inside source file (#731) * Remove private H5_GCC_DIAG_OFF/ON from standalone program (#734) * Fixes C++ warnings when passing hsize_t values to printf in test code (#745) * Squashed commit of the following: commit 1aa2c3421bef7ccd3610392d06c1856362c37312 Author: Larry Knox <lrknox@hdfgroup.org> Date: Sun Jul 25 21:20:20 2021 -0500 Merge issue 839 develop PRs to hdf5 1 10 - round 2 (#852) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Squashed commit of the following: commit e2578640fedf671cf11535cf22313dd477da1165 Author: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jul 16 10:57:51 2021 -0500 Merge issue 839 changes to hdf5 1 10 (#841) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit 60734e63fe077238f10de3d6ca8f037f9a42af89 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit bfb780a4441e4ef43dd23708d415e5e3b84800f4 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30 Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb Author: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit e25980e7f35b8508db90648409ba80ee36d61c9e Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit 426b50484841118cf633fd6147302a63a30fd746. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-for… * Normalization of H5_nanosleep() with VFD SWMR branch (#746) * Normalization of H5_nanosleep() with VFD SWMR branch * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes some H5SL include statements (#758) * Fixes an array issue flagged by PGI in a C++ test (#763) * Fixes non-C99 format strings in tarray test code (#766) * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks and work-arounds for strtoll and strtoull * Removes CMake checks for strtoll and strtoull * Removes checks for (v)snprintf, which are C99 (#772) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Cleans up some POSIX header bits in H5private.h (#783) * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Removes ancient Autotools cruft (#790) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Update initialization of table_id in PacketTable Null constructor for non c++11 clang compiler. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
author: Larry Knox <lrknox@hdfgroup.org> 2021-07-26 17:12:50 (GMT)
committer: GitHub <noreply@github.com> 2021-07-26 17:12:50 (GMT)
commit: 8590e58ebb4ebea81c743a876f784b9a38fa84bc (patch)
tree: 9195cbf42b1bfc293f13eb1ff8155c34a2db9329
parent: 1aa2c3421bef7ccd3610392d06c1856362c37312 (diff)
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19 files changed, 156 insertions, 412 deletions
diff --git a/c++/test/tarray.cpp b/c++/test/tarray.cpp
index 7525c5f..0edfe0e 100644
--- a/c++/test/tarray.cpp
+++ b/c++/test/tarray.cpp
@@ -178,9 +178,9 @@ test_array_compound_array()
         // Check the array dimensions
         for (ii = 0; ii < ndims; ii++)
             if (rdims1[ii] != tdims1[ii]) {
-                TestErrPrintf(
-                    "Array dimension information doesn't match!, rdims1[%d]=%lld, tdims1[%d]=%lld\n", ii,
-                    rdims1[ii], ii, tdims1[ii]);
+                TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                              ", tdims1[%d]=%" PRIuHSIZE "\n",
+                              ii, rdims1[ii], ii, tdims1[ii]);
                 continue;
             } // end if
 
@@ -197,9 +197,9 @@ test_array_compound_array()
         // Check the array dimensions
         for (ii = 0; ii < ndims; ii++)
             if (rdims1[ii] != tdims1[ii]) {
-                TestErrPrintf(
-                    "Array dimension information doesn't match!, rdims1[%d]=%lld, tdims1[%d]=%lld\n", ii,
-                    rdims1[ii], ii, tdims1[ii]);
+                TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                              ", tdims1[%d]=%" PRIuHSIZE "\n",
+                              ii, rdims1[ii], ii, tdims1[ii]);
                 continue;
             } // end if
 
@@ -248,9 +248,9 @@ test_array_compound_array()
         // Check the array dimensions
         for (ii = 0; ii < ndims; ii++)
             if (rdims1[ii] != tdims1[ii]) {
-                TestErrPrintf(
-                    "Array dimension information doesn't match!, rdims1[%d]=%lld, tdims1[%d]=%lld\n", ii,
-                    rdims1[ii], ii, tdims1[ii]);
+                TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                              ", tdims1[%d]=%" PRIuHSIZE "\n",
+                              ii, rdims1[ii], ii, tdims1[ii]);
                 continue;
             } // end if
 
@@ -265,8 +265,9 @@ test_array_compound_array()
         for (idxi = 0; idxi < SPACE1_DIM1; idxi++) {
             for (idxj = 0; idxj < ARRAY1_DIM1; idxj++) {
                 if (wdata[idxi][idxj].i != rdata[idxi][idxj].i) {
-                    TestErrPrintf("Array data information doesn't match!, wdata[%lld][%lld].i=%d, "
-                                  "rdata[%lld][%lld].i=%d\n",
+                    TestErrPrintf("Array data information doesn't match!, wdata[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "].i=%d, "
+                                  "rdata[%" PRIuHSIZE "][%" PRIuHSIZE "].i=%d\n",
                                   idxi, idxj, wdata[idxi][idxj].i, idxi, idxj, rdata[idxi][idxj].i);
                     continue;
                 } // end if
@@ -457,11 +458,11 @@ test_array_info()
             // Check the array dimensions
             for (ii = 0; ii < ndims; ii++)
                 if (rdims1[ii] != tdims1[ii]) {
-                    TestErrPrintf(
-                        "Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=z%llu\n", ii,
-                        rdims1[ii], ii, tdims1[ii]);
+                    TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                                  ", tdims1[%d]=%" PRIuHSIZE "\n",
+                                  ii, rdims1[ii], ii, tdims1[ii]);
                     continue;
-                } // end if
+                }
         }
 
         // Close all
diff --git a/c++/test/tattr.cpp b/c++/test/tattr.cpp
index 228b787..fe2bfaa 100644
--- a/c++/test/tattr.cpp
+++ b/c++/test/tattr.cpp
@@ -169,7 +169,8 @@ test_attr_basic_write()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1[%llu]=%d,read_data1[%llu]=%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1[%" PRIuHSIZE
+                              "]=%d,read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1[i], i, read_data1[i]);
 
         // Create two more attributes for this dataset, but only write to one.
@@ -185,7 +186,8 @@ test_attr_basic_write()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1a[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1a[%llu]=%d,read_data1[%llu]=%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1a[%" PRIuHSIZE
+                              "]=%d,read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1a[i], i, read_data1[i]);
 
         // Close both attributes
@@ -448,7 +450,8 @@ test_attr_rename()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1[%llu]=%d,read_data1[%llu%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1[%" PRIuHSIZE
+                              "]=%d,read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1[i], i, read_data1[i]);
 
         // Close attribute
@@ -472,7 +475,8 @@ test_attr_rename()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1a[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1a[%llu]=%d,read_data1[%llu]=%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1a[%" PRIuHSIZE
+                              "]=%d,read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1a[i], i, read_data1[i]);
 
         // Close attribute
@@ -537,7 +541,8 @@ test_attr_basic_read()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1[%llu]=%d, read_data1[%llu]=%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1[%" PRIuHSIZE
+                              "]=%d, read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1[i], i, read_data1[i]);
 
         /*
@@ -568,8 +573,9 @@ test_attr_basic_read()
         for (i = 0; i < ATTR2_DIM1; i++)
             for (j = 0; j < ATTR2_DIM2; j++)
                 if (attr_data2[i][j] != read_data2[i][j]) {
-                    TestErrPrintf("%d: attribute data different: attr_data2[%llu][%llu]=%d, "
-                                  "read_data2[%llu][%llu]=%d\n",
+                    TestErrPrintf("%d: attribute data different: attr_data2[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "]=%d, "
+                                  "read_data2[%" PRIuHSIZE "][%" PRIuHSIZE "]=%d\n",
                                   __LINE__, i, j, attr_data2[i][j], i, j, read_data2[i][j]);
                 }
         PASSED();
@@ -772,14 +778,17 @@ test_attr_compound_read()
         for (ii = 0; ii < ATTR4_DIM1; ii++)
             for (jj = 0; jj < ATTR4_DIM2; jj++)
                 if (HDmemcmp(&attr_data4[ii][jj], &read_data4[ii][jj], sizeof(struct attr4_struct)) != 0) {
-                    TestErrPrintf("%d:attribute data different: attr_data4[%llu][%llu].i=%d, "
-                                  "read_data4[%llu][%llu].i=%d\n",
+                    TestErrPrintf("%d:attribute data different: attr_data4[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "].i=%d, "
+                                  "read_data4[%" PRIuHSIZE "][%" PRIuHSIZE "].i=%d\n",
                                   __LINE__, ii, jj, attr_data4[ii][jj].i, ii, jj, read_data4[ii][jj].i);
-                    TestErrPrintf("%d:attribute data different: attr_data4[%llu][%llu].d=%f, "
-                                  "read_data4[%llu][%llu].d=%f\n",
+                    TestErrPrintf("%d:attribute data different: attr_data4[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "].d=%f, "
+                                  "read_data4[%" PRIuHSIZE "][%" PRIuHSIZE "].d=%f\n",
                                   __LINE__, ii, jj, attr_data4[ii][jj].d, ii, jj, read_data4[ii][jj].d);
-                    TestErrPrintf("%d:attribute data different: attr_data4[%llu][%llu].c=%c, "
-                                  "read_data4[%llu][%llu].c=%c\n",
+                    TestErrPrintf("%d:attribute data different: attr_data4[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "].c=%c, "
+                                  "read_data4[%" PRIuHSIZE "][%" PRIuHSIZE "].c=%c\n",
                                   __LINE__, ii, jj, attr_data4[ii][jj].c, ii, jj, read_data4[ii][jj].c);
                 } /* end if */
 
@@ -1042,10 +1051,10 @@ test_attr_mult_read()
 
         // Get the dims of the dataspace and verify them
         hsize_t dims[ATTR_MAX_DIMS]; // Attribute dimensions
-        int     ndims = space.getSimpleExtentDims(dims);
-        if ((long)dims[0] != (long)ATTR1_DIM1)
-            TestErrPrintf("%d:attribute dimensions different: dims[0]=%d, should be %llu\n", __LINE__,
-                          (int)dims[0], ATTR1_DIM1);
+        (void)space.getSimpleExtentDims(dims);
+        if (dims[0] != ATTR1_DIM1)
+            TestErrPrintf("%d:attribute dimensions different: dims[0]=%d, should be %" PRIuHSIZE "\n",
+                          __LINE__, static_cast<int>(dims[0]), ATTR1_DIM1);
 
         /* Verify Datatype */
 
@@ -1072,7 +1081,8 @@ test_attr_mult_read()
         // Verify values read in
         for (i = 0; i < ATTR1_DIM1; i++)
             if (attr_data1[i] != read_data1[i])
-                TestErrPrintf("%d: attribute data different: attr_data1[%llu]=%d,read_data1[%llu]=%d\n",
+                TestErrPrintf("%d: attribute data different: attr_data1[%" PRIuHSIZE
+                              "]=%d,read_data1[%" PRIuHSIZE "]=%d\n",
                               __LINE__, i, attr_data1[i], i, read_data1[i]);
 
         // Verify Name
@@ -1095,7 +1105,7 @@ test_attr_mult_read()
         verify_val(rank, ATTR2_RANK, "DataSpace::getSimpleExtentNdims", __LINE__, __FILE__);
 
         // Get the dims of the dataspace and verify them
-        ndims = space.getSimpleExtentDims(dims);
+        int ndims = space.getSimpleExtentDims(dims);
 
         verify_val((long)dims[0], (long)ATTR2_DIM1, "DataSpace::getSimpleExtentDims", __LINE__, __FILE__);
         verify_val((long)dims[1], (long)ATTR2_DIM2, "DataSpace::getSimpleExtentDims", __LINE__, __FILE__);
@@ -1127,8 +1137,9 @@ test_attr_mult_read()
         for (i = 0; i < ATTR2_DIM1; i++)
             for (j = 0; j < ATTR2_DIM2; j++)
                 if (attr_data2[i][j] != read_data2[i][j])
-                    TestErrPrintf("%d: attribute data different: attr_data2[%llu][%llu]=%d, "
-                                  "read_data2[%llu][%llu]=%d\n",
+                    TestErrPrintf("%d: attribute data different: attr_data2[%" PRIuHSIZE "][%" PRIuHSIZE
+                                  "]=%d, "
+                                  "read_data2[%" PRIuHSIZE "][%" PRIuHSIZE "]=%d\n",
                                   __LINE__, i, j, attr_data2[i][j], i, j, read_data2[i][j]);
 
         // Verify Name
@@ -1181,9 +1192,10 @@ test_attr_mult_read()
         for (i = 0; i < ATTR3_DIM1; i++)
             for (j = 0; j < ATTR3_DIM2; j++)
                 for (k = 0; k < ATTR3_DIM3; k++)
-                    if (attr_data3[i][j][k] != read_data3[i][j][k])
-                        TestErrPrintf("%d: attribute data different: attr_data3[%llu][%llu][%llu]=%f, "
-                                      "read_data3[%llu][%llu][%llu]=%f\n",
+                    if (abs(attr_data3[i][j][k] - read_data3[i][j][k]) > DBL_EPSILON)
+                        TestErrPrintf("%d: attribute data different: attr_data3[%" PRIuHSIZE "][%" PRIuHSIZE
+                                      "][%" PRIuHSIZE "]=%f, "
+                                      "read_data3[%" PRIuHSIZE "][%" PRIuHSIZE "][%" PRIuHSIZE "]=%f\n",
                                       __LINE__, i, j, k, attr_data3[i][j][k], i, j, k, read_data3[i][j][k]);
 
         // Verify Name
diff --git a/c++/test/ttypes.cpp b/c++/test/ttypes.cpp
index 5fc82a5..a244965 100644
--- a/c++/test/ttypes.cpp
+++ b/c++/test/ttypes.cpp
@@ -726,8 +726,11 @@ test_named()
 
         // It should be possible to define an attribute for the named type
         Attribute attr1 = itype.createAttribute("attr1", PredType::NATIVE_UCHAR, space);
-        for (i = 0; i < ds_size[0] * ds_size[1]; i++)
-            attr_data[0][i] = (int)i; /*tricky*/
+        for (hsize_t i = 0; i < ds_size[0]; i++) {
+            for (hsize_t j = 0; j < ds_size[1]; j++) {
+                attr_data[i][j] = static_cast<unsigned>(i * ds_size[1] + j);
+            }
+        }
         attr1.write(PredType::NATIVE_UINT, attr_data);
         attr1.close();
 
diff --git a/config/cmake/H5pubconf.h.in b/config/cmake/H5pubconf.h.in
index 842cfe8..5aa00fe 100644
--- a/config/cmake/H5pubconf.h.in
+++ b/config/cmake/H5pubconf.h.in
@@ -35,6 +35,10 @@
 /* Define if dev_t is a scalar */
 #cmakedefine H5_DEV_T_IS_SCALAR @H5_DEV_T_IS_SCALAR@
 
+/* Define if your system is IBM ppc64le and cannot convert some long double
+   values correctly. */
+#cmakedefine H5_DISABLE_SOME_LDOUBLE_CONV @H5_DISABLE_SOME_LDOUBLE_CONV@
+
 /* Define to dummy `main' function (if any) required to link to the Fortran
    libraries. */
 #cmakedefine H5_FC_DUMMY_MAIN @H5_FC_DUMMY_MAIN@
@@ -111,7 +115,7 @@
 #cmakedefine H5_HAVE_CODESTACK @H5_HAVE_CODESTACK@
 
 /* Define to 1 if you have the <curl/curl.h> header file. */
-#cmakedefine H5_HAVE_CURL_H @H5_HAVE_CURL_H@
+#cmakedefine H5_HAVE_CURL_CURL_H @H5_HAVE_CURL_H@
 
 /* Define if Darwin or Mac OS X */
 #cmakedefine H5_HAVE_DARWIN @H5_HAVE_DARWIN@
@@ -191,9 +195,6 @@
 /* Define to 1 if you have the <hdfs.h> header file. */
 #cmakedefine H5_HAVE_HDFS_H @H5_HAVE_HDFS_H@
 
-/* Define if the compiler understands inline */
-#cmakedefine H5_HAVE_INLINE @H5_HAVE_INLINE@
-
 /* Define if parallel library will contain instrumentation to detect correct
    optimization operation */
 #cmakedefine H5_HAVE_INSTRUMENTED_LIBRARY @H5_HAVE_INSTRUMENTED_LIBRARY@
@@ -340,16 +341,13 @@
 /* Define to 1 if you have the `sigsetjmp' function. */
 #cmakedefine H5_HAVE_SIGSETJMP @H5_HAVE_SIGSETJMP@
 
-/* Define to 1 if you have the `snprintf' function. */
-#cmakedefine H5_HAVE_SNPRINTF @H5_HAVE_SNPRINTF@
-
 /* Define to 1 if you have the `srandom' function. */
 #cmakedefine H5_HAVE_SRANDOM @H5_HAVE_SRANDOM@
 
 /* Define to 1 if you have the `stat64' function. */
 #cmakedefine H5_HAVE_STAT64 @H5_HAVE_STAT64@
 
-/* Define if `struct stat' has the `st_blocks' field */
+/* Define if struct stat has the st_blocks field */
 #cmakedefine H5_HAVE_STAT_ST_BLOCKS @H5_HAVE_STAT_ST_BLOCKS@
 
 /* Define to 1 if you have the <stddef.h> header file. */
@@ -367,12 +365,6 @@
 /* Define to 1 if you have the <string.h> header file. */
 #cmakedefine H5_HAVE_STRING_H @H5_HAVE_STRING_H@
 
-/* Define to 1 if you have the `strtoll' function. */
-#cmakedefine H5_HAVE_STRTOLL @H5_HAVE_STRTOLL@
-
-/* Define to 1 if you have the `strtoull' function. */
-#cmakedefine H5_HAVE_STRTOULL @H5_HAVE_STRTOULL@
-
 /* Define if struct text_info is defined */
 #cmakedefine H5_HAVE_STRUCT_TEXT_INFO @H5_HAVE_STRUCT_TEXT_INFO@
 
@@ -382,9 +374,6 @@
 /* Define to 1 if you have the `symlink' function. */
 #cmakedefine H5_HAVE_SYMLINK @H5_HAVE_SYMLINK@
 
-/* Define to 1 if you have the `system' function. */
-#cmakedefine H5_HAVE_SYSTEM @H5_HAVE_SYSTEM@
-
 /* Define to 1 if you have the <sys/file.h> header file. */
 #cmakedefine H5_HAVE_SYS_FILE_H @H5_HAVE_SYS_FILE_H@
 
@@ -438,9 +427,6 @@
 /* Define to 1 if you have the `vasprintf' function. */
 #cmakedefine H5_HAVE_VASPRINTF @H5_HAVE_VASPRINTF@
 
-/* Define to 1 if you have the `vsnprintf' function. */
-#cmakedefine H5_HAVE_VSNPRINTF @H5_HAVE_VSNPRINTF@
-
 /* Define to 1 if you have the `waitpid' function. */
 #cmakedefine H5_HAVE_WAITPID @H5_HAVE_WAITPID@
 
@@ -462,12 +448,6 @@
 /* Define to 1 if you have the `_scrsize' function. */
 #cmakedefine H5_HAVE__SCRSIZE @H5_HAVE__SCRSIZE@
 
-/* Define if the compiler understands __inline */
-#cmakedefine H5_HAVE___INLINE @H5_HAVE___INLINE@
-
-/* Define if the compiler understands __inline__ */
-#cmakedefine H5_HAVE___INLINE__ @H5_HAVE___INLINE__@
-
 /* Define if the library will ignore file locks when disabled */
 #cmakedefine H5_IGNORE_DISABLED_FILE_LOCKS @H5_IGNORE_DISABLED_FILE_LOCKS@
 
@@ -490,9 +470,6 @@
    with special algorithm. */
 #cmakedefine H5_LONG_TO_LDOUBLE_SPECIAL @H5_LONG_TO_LDOUBLE_SPECIAL@
 
-/* Define if your system is power6 and cannot convert some long double values. */
-#cmakedefine H5_DISABLE_SOME_LDOUBLE_CONV @H5_DISABLE_SOME_LDOUBLE_CONV@
-
 /* Define to the sub-directory where libtool stores uninstalled libraries. */
 #cmakedefine H5_LT_OBJDIR @H5_LT_OBJDIR@
 
@@ -708,15 +685,15 @@
 /* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
 #cmakedefine H5_TIME_WITH_SYS_TIME @H5_TIME_WITH_SYS_TIME@
 
+/* Define using v1.10 public API symbols by default */
+#cmakedefine H5_USE_110_API_DEFAULT @H5_USE_110_API_DEFAULT@
+
 /* Define using v1.6 public API symbols by default */
 #cmakedefine H5_USE_16_API_DEFAULT @H5_USE_16_API_DEFAULT@
 
 /* Define using v1.8 public API symbols by default */
 #cmakedefine H5_USE_18_API_DEFAULT @H5_USE_18_API_DEFAULT@
 
-/* Define using v1.10 public API symbols by default */
-#cmakedefine H5_USE_110_API_DEFAULT @H5_USE_110_API_DEFAULT@
-
 /* Define if the library will use file locking */
 #cmakedefine H5_USE_FILE_LOCKING @H5_USE_FILE_LOCKING@
 
diff --git a/config/cmake_ext_mod/ConfigureChecks.cmake b/config/cmake_ext_mod/ConfigureChecks.cmake
index d44ede7..5c3cba8 100644
--- a/config/cmake_ext_mod/ConfigureChecks.cmake
+++ b/config/cmake_ext_mod/ConfigureChecks.cmake
@@ -72,7 +72,6 @@ if (WINDOWS)
   set (${HDF_PREFIX}_HAVE_WIN32_API 1)
   set (${HDF_PREFIX}_HAVE_LIBM 1)
   set (${HDF_PREFIX}_HAVE_STRDUP 1)
-  set (${HDF_PREFIX}_HAVE_SYSTEM 1)
   set (${HDF_PREFIX}_HAVE_LONGJMP 1)
   if (NOT MINGW)
     set (${HDF_PREFIX}_HAVE_GETHOSTNAME 1)
@@ -499,26 +498,15 @@ CHECK_FUNCTION_EXISTS (siglongjmp        ${HDF_PREFIX}_HAVE_SIGLONGJMP)
 CHECK_FUNCTION_EXISTS (sigsetjmp         ${HDF_PREFIX}_HAVE_SIGSETJMP)
 CHECK_FUNCTION_EXISTS (sigprocmask       ${HDF_PREFIX}_HAVE_SIGPROCMASK)
 
-CHECK_FUNCTION_EXISTS (snprintf          ${HDF_PREFIX}_HAVE_SNPRINTF)
 CHECK_FUNCTION_EXISTS (srandom           ${HDF_PREFIX}_HAVE_SRANDOM)
 CHECK_FUNCTION_EXISTS (strdup            ${HDF_PREFIX}_HAVE_STRDUP)
-CHECK_FUNCTION_EXISTS (strtoll           ${HDF_PREFIX}_HAVE_STRTOLL)
-CHECK_FUNCTION_EXISTS (strtoull          ${HDF_PREFIX}_HAVE_STRTOULL)
 CHECK_FUNCTION_EXISTS (symlink           ${HDF_PREFIX}_HAVE_SYMLINK)
-CHECK_FUNCTION_EXISTS (system            ${HDF_PREFIX}_HAVE_SYSTEM)
 
 CHECK_FUNCTION_EXISTS (tmpfile           ${HDF_PREFIX}_HAVE_TMPFILE)
 CHECK_FUNCTION_EXISTS (asprintf          ${HDF_PREFIX}_HAVE_ASPRINTF)
 CHECK_FUNCTION_EXISTS (vasprintf         ${HDF_PREFIX}_HAVE_VASPRINTF)
 CHECK_FUNCTION_EXISTS (waitpid           ${HDF_PREFIX}_HAVE_WAITPID)
 
-CHECK_FUNCTION_EXISTS (vsnprintf         ${HDF_PREFIX}_HAVE_VSNPRINTF)
-if (MINGW OR NOT WINDOWS)
-  if (${HDF_PREFIX}_HAVE_VSNPRINTF)
-    HDF_FUNCTION_TEST (VSNPRINTF_WORKS)
-  endif ()
-endif ()
-
 #-----------------------------------------------------------------------------
 # sigsetjmp is special; may actually be a macro
 #-----------------------------------------------------------------------------
@@ -610,14 +598,6 @@ if (WINDOWS)
 endif ()
 
 #-----------------------------------------------------------------------------
-# Determine how 'inline' is used
-#-----------------------------------------------------------------------------
-foreach (inline_test inline __inline__ __inline)
-  string (TOUPPER ${inline_test} INLINE_TEST_MACRO)
-  HDF_FUNCTION_TEST (HAVE_${INLINE_TEST_MACRO})
-endforeach ()
-
-#-----------------------------------------------------------------------------
 # Check how to print a Long Long integer
 #-----------------------------------------------------------------------------
 if (NOT ${HDF_PREFIX}_PRINTF_LL_WIDTH OR ${HDF_PREFIX}_PRINTF_LL_WIDTH MATCHES "unknown")
diff --git a/config/cmake_ext_mod/HDFTests.c b/config/cmake_ext_mod/HDFTests.c
index 0c3b7b7..365931b 100644
--- a/config/cmake_ext_mod/HDFTests.c
+++ b/config/cmake_ext_mod/HDFTests.c
@@ -64,31 +64,6 @@ main ()
 
 #endif
 
-#ifdef VSNPRINTF_WORKS
-#include <stdio.h>
-#include <stdlib.h>
-#include <stdarg.h>
-
-int test_vsnprintf(const char *fmt,...)
-{
-    va_list     ap;
-    char *s = malloc(16);
-    int ret;
-
-    va_start(ap, fmt);
-    ret=vsnprintf(s,16,"%s",ap);
-    va_end(ap);
-
-    return(ret!=42 ? 1 : 0);
-}
-
-int main(void)
-{
-    return(test_vsnprintf("%s","A string that is longer than 16 characters"));
-}
-#endif
-
-
 #ifdef HAVE_ATTRIBUTE
 
 #if 0
@@ -356,20 +331,3 @@ int main ()
 }
 
 #endif /* HAVE_IOEO */
-
-#if defined( HAVE_INLINE ) || defined( HAVE___INLINE__ ) || defined( HAVE___INLINE )
-#ifndef __cplusplus
-#if defined( HAVE_INLINE )
-#  define INLINE_KW inline
-#elif defined ( HAVE___INLINE__ )
-#  define INLINE_KW __inline__
-#elif defined ( HAVE___INLINE )
-#  define INLINE_KW __inline
-#endif /* HAVE_INLINE */
-typedef int foo_t;
-static INLINE_KW foo_t static_foo () { return 0; }
-INLINE_KW foo_t foo () {return 0; }
-int main(void) { return 0; }
-#endif /* __cplusplus */
-#endif /* defined( HAVE_INLINE ) || defined( HAVE___INLINE__ ) || defined( HAVE___INLINE ) */
-
diff --git a/config/commence.am b/config/commence.am
index ef2bd97..a87e7df 100644
--- a/config/commence.am
+++ b/config/commence.am
@@ -45,7 +45,7 @@ LIBH5CPP_HL=$(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 docdir = $(exec_prefix)/doc
 
 # Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below
-# has been removed. According to the official description of DESTDIR by Gnu at
+# has been removed. According to the official description of DESTDIR by GNU at
 # http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
 # prepended to the normal and complete install path that it precedes for the
 # purpose of installing in a temporary directory which is useful for building
diff --git a/configure.ac b/configure.ac
index d233323..16409d8 100644
--- a/configure.ac
+++ b/configure.ac
@@ -449,15 +449,9 @@ esac
 ## Data types and their sizes.
 ##
 AC_TYPE_OFF_T
-AC_CHECK_TYPE([size_t], [],
-        [AC_DEFINE_UNQUOTED([size_t], [unsigned long],
-                [Define to `unsigned long' if <sys/types.h> does not define.])])
 AC_CHECK_TYPE([ssize_t], [],
         [AC_DEFINE_UNQUOTED([ssize_t], [long],
                 [Define to `long' if <sys/types.h> does not define.])])
-AC_CHECK_TYPE([ptrdiff_t], [],
-        [AC_DEFINE_UNQUOTED([ptrdiff_t], [long],
-                [Define to `long' if <sys/types.h> does not define.])])
 AC_C_BIGENDIAN
 AC_CHECK_SIZEOF([char])
 AC_CHECK_SIZEOF([short])
@@ -1216,8 +1210,6 @@ AC_CHECK_LIB([dl], [dlopen])
 ## ----------------------------------------------------------------------
 ## Check for system header files.
 ##
-AC_HEADER_STDC
-AC_HEADER_TIME
 
 ## Unix
 AC_CHECK_HEADERS([sys/resource.h sys/time.h unistd.h sys/ioctl.h sys/stat.h])
@@ -1338,16 +1330,6 @@ CFLAGS="$H5_CFLAGS $AM_CFLAGS $CFLAGS"
 ## Checkpoint the cache
 AC_CACHE_SAVE
 
-## Write the confdefs.h header for checking sizes
-cat >>confdefs.h <<\EOF
-#include <stdbool.h>
-#include <stdint.h>
-#ifdef HAVE_UNISTD_H
-#include <sys/types.h>
-#endif
-#include <time.h>
-EOF
-
 AC_CHECK_SIZEOF(        [int8_t])
 AC_CHECK_SIZEOF(       [uint8_t])
 AC_CHECK_SIZEOF(  [int_least8_t])
@@ -1376,12 +1358,13 @@ AC_CHECK_SIZEOF([uint_least64_t])
 AC_CHECK_SIZEOF(  [int_fast64_t])
 AC_CHECK_SIZEOF( [uint_fast64_t])
 
-AC_CHECK_SIZEOF([bool])
+
+AC_CHECK_SIZEOF([bool], [], [#include <stdbool.h>])
 AC_CHECK_SIZEOF([off_t])
 AC_CHECK_SIZEOF([ptrdiff_t])
 AC_CHECK_SIZEOF([size_t])
 AC_CHECK_SIZEOF([ssize_t])
-AC_CHECK_SIZEOF([time_t])
+AC_CHECK_SIZEOF([time_t], [], [#include <time.h>])
 
 ## Checkpoint the cache
 AC_CACHE_SAVE
@@ -2016,37 +1999,13 @@ AC_CHECK_FUNCS([alarm clock_gettime difftime fcntl flock fork frexpf])
 AC_CHECK_FUNCS([frexpl gethostname getrusage gettimeofday])
 AC_CHECK_FUNCS([lstat rand_r random setsysinfo])
 AC_CHECK_FUNCS([signal longjmp setjmp siglongjmp sigsetjmp sigprocmask])
-AC_CHECK_FUNCS([snprintf srandom strdup symlink system])
-AC_CHECK_FUNCS([strtoll strtoull])
-AC_CHECK_FUNCS([tmpfile asprintf vasprintf vsnprintf waitpid])
+AC_CHECK_FUNCS([srandom strdup symlink])
+AC_CHECK_FUNCS([tmpfile asprintf vasprintf waitpid])
 AC_CHECK_FUNCS([roundf lroundf llroundf round lround llround])
 
 ## ----------------------------------------------------------------------
 ## Check compiler characteristics
 ##
-AC_C_CONST
-
-AC_MSG_CHECKING([if the compiler understands  __inline__])
-AC_COMPILE_IFELSE(
-    [AC_LANG_SOURCE([[static __inline__ void f(void){return;};]])],
-    [AC_DEFINE([HAVE___INLINE__], [1], [Define if the compiler understands __inline__]) AC_MSG_RESULT([yes])],
-    [AC_MSG_RESULT([no])]
-)
-
-AC_MSG_CHECKING([if the compiler understands __inline])
-AC_COMPILE_IFELSE(
-    [AC_LANG_SOURCE([[static __inline void f(void){return;};]])],
-    [AC_DEFINE([HAVE___INLINE], [1], [Define if the compiler understands __inline]) AC_MSG_RESULT([yes])],
-    [AC_MSG_RESULT([no])]
-)
-
-AC_MSG_CHECKING([if the compiler understands inline])
-AC_COMPILE_IFELSE(
-    [AC_LANG_SOURCE([[static inline void f(void){return;};]])],
-    [AC_DEFINE([HAVE_INLINE], [1], [Define if the compiler understands inline]) AC_MSG_RESULT([yes])],
-    [AC_MSG_RESULT([no])]
-)
-
 AC_MSG_CHECKING([for __attribute__ extension])
 AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[]],[[int __attribute__((unused)) x]])],
                [AC_DEFINE([HAVE_ATTRIBUTE], [1],
diff --git a/hl/c++/src/H5PacketTable.cpp b/hl/c++/src/H5PacketTable.cpp
index 0f47b0d..5f41e26 100644
--- a/hl/c++/src/H5PacketTable.cpp
+++ b/hl/c++/src/H5PacketTable.cpp
@@ -28,6 +28,14 @@
 /* PacketTable superclass       */
 /********************************/
 
+/* Null constructor
+ * Sets table_id to "invalid"
+ */
+PacketTable::PacketTable()
+{
+    table_id = H5I_INVALID_HID;
+}
+
 /* "Open" Constructor
  * Opens an existing packet table, which can contain either fixed-length or
  * variable-length packets.
diff --git a/hl/c++/src/H5PacketTable.h b/hl/c++/src/H5PacketTable.h
index a73b4c9..eae66f1 100644
--- a/hl/c++/src/H5PacketTable.h
+++ b/hl/c++/src/H5PacketTable.h
@@ -31,12 +31,9 @@
 class H5_HLCPPDLL PacketTable {
   public:
     /* Null constructor
-     * Sets table_id to "invalid"
+     * Sets table_id to H5I_INVALID_HID
      */
-    PacketTable()
-    {
-        table_id = H5I_BADID;
-    }
+    PacketTable();
 
     /* "Open" Constructor
      * Opens an existing packet table, which can contain either fixed-length or
diff --git a/src/H5Gint.c b/src/H5Gint.c
index 3ef9532..38a3241 100644
--- a/src/H5Gint.c
+++ b/src/H5Gint.c
@@ -38,6 +38,7 @@
 #include "H5Iprivate.h"  /* IDs                                      */
 #include "H5Lprivate.h"  /* Links                                    */
 #include "H5MMprivate.h" /* Memory management                        */
+#include "H5SLprivate.h" /* Skip lists                               */
 
 /****************/
 /* Local Macros */
diff --git a/src/H5Gpkg.h b/src/H5Gpkg.h
index 484715e..b704757 100644
--- a/src/H5Gpkg.h
+++ b/src/H5Gpkg.h
@@ -35,7 +35,6 @@
 #include "H5HFprivate.h" /* Fractal heaps            */
 #include "H5HLprivate.h" /* Local Heaps                */
 #include "H5Oprivate.h"  /* Object headers              */
-#include "H5SLprivate.h" /* Skip lists                */
 
 /**************************/
 /* Package Private Macros */
diff --git a/src/H5HFpkg.h b/src/H5HFpkg.h
index a18d101..0bedaff 100644
--- a/src/H5HFpkg.h
+++ b/src/H5HFpkg.h
@@ -34,7 +34,6 @@
 #include "H5B2private.h" /* v2 B-trees				*/
 #include "H5FLprivate.h" /* Free Lists                           */
 #include "H5FSprivate.h" /* Free space manager			*/
-#include "H5SLprivate.h" /* Skip lists				*/
 
 /**************************/
 /* Package Private Macros */
diff --git a/src/H5private.h b/src/H5private.h
index b31ec78..56fdf3d 100644
--- a/src/H5private.h
+++ b/src/H5private.h
@@ -26,21 +26,6 @@
 
 #include "H5public.h" /* Include Public Definitions    */
 
-/* include the pthread header */
-#ifdef H5_HAVE_THREADSAFE
-#ifdef H5_HAVE_WIN32_API
-#ifndef H5_HAVE_WIN_THREADS
-#ifdef H5_HAVE_PTHREAD_H
-#include <pthread.h>
-#endif /* H5_HAVE_PTHREAD_H */
-#endif /* H5_HAVE_WIN_THREADS */
-#else  /* H5_HAVE_WIN32_API */
-#ifdef H5_HAVE_PTHREAD_H
-#include <pthread.h>
-#endif /* H5_HAVE_PTHREAD_H */
-#endif /* H5_HAVE_WIN32_API */
-#endif /* H5_HAVE_THREADSAFE */
-
 #include <assert.h>
 #include <ctype.h>
 #include <errno.h>
@@ -49,54 +34,36 @@
 #include <limits.h>
 #include <math.h>
 #include <signal.h>
+#include <stdint.h>
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
+#include <time.h>
 
-/*
- * If _POSIX_VERSION is defined in unistd.h then this system is Posix.1
- * compliant. Otherwise all bets are off.
- */
+/* POSIX headers */
 #ifdef H5_HAVE_UNISTD_H
-#include <sys/types.h>
+#include <pwd.h>
 #include <unistd.h>
-#endif
-#ifdef _POSIX_VERSION
+#include <sys/time.h>
+#include <sys/types.h>
 #include <sys/wait.h>
-#include <pwd.h>
 #endif
 
-#include <stdint.h>
+/* Include the Pthreads header, if necessary */
+#if defined(H5_HAVE_THREADSAFE) && defined(H5_HAVE_PTHREAD_H)
+#include <pthread.h>
+#endif
 
 /*
- * The `struct stat' data type for stat() and fstat(). This is a Posix file
- * but often apears on non-Posix systems also.  The `struct stat' is required
- * for hdf5 to compile, although only a few fields are actually used.
+ * The `struct stat' data type for stat() and fstat(). This is a POSIX file
+ * but often apears on non-POSIX systems also.  The `struct stat' is required
+ * for HDF5 to compile, although only a few fields are actually used.
  */
 #ifdef H5_HAVE_SYS_STAT_H
 #include <sys/stat.h>
 #endif
 
 /*
- * If a program may include both `time.h' and `sys/time.h' then
- * TIME_WITH_SYS_TIME is defined (see AC_HEADER_TIME in configure.ac).
- * On some older systems, `sys/time.h' includes `time.h' but `time.h' is not
- * protected against multiple inclusion, so programs should not explicitly
- * include both files. This macro is useful in programs that use, for example,
- * `struct timeval' or `struct timezone' as well as `struct tm'.  It is best
- * used in conjunction with `HAVE_SYS_TIME_H', whose existence is checked
- * by `AC_CHECK_HEADERS(sys/time.h)' in configure.ac.
- */
-#if defined(H5_TIME_WITH_SYS_TIME)
-#include <sys/time.h>
-#include <time.h>
-#elif defined(H5_HAVE_SYS_TIME_H)
-#include <sys/time.h>
-#else
-#include <time.h>
-#endif
-
-/*
  * Longjumps are used to detect alignment constrants
  */
 #ifdef H5_HAVE_SETJMP_H
@@ -1449,11 +1416,7 @@ H5_DLL void HDsrand(unsigned int seed);
 #define HDstrtol(S, R, N) strtol(S, R, N)
 #endif /* HDstrtol */
 #ifndef HDstrtoll
-#ifdef H5_HAVE_STRTOLL
 #define HDstrtoll(S, R, N) strtoll(S, R, N)
-#else
-H5_DLL int64_t HDstrtoll(const char *s, const char **rest, int base);
-#endif /* H5_HAVE_STRTOLL */
 #endif /* HDstrtoll */
 #ifndef HDstrtoul
 #define HDstrtoul(S, R, N) strtoul(S, R, N)
@@ -1551,7 +1514,7 @@ H5_DLL int64_t HDstrtoll(const char *s, const char **rest, int base);
 #ifdef H5_HAVE_VASPRINTF
 #define HDvasprintf(RET, FMT, A) vasprintf(RET, FMT, A)
 #else
-H5_DLL int     HDvasprintf(char **bufp, const char *fmt, va_list _ap);
+H5_DLL int HDvasprintf(char **bufp, const char *fmt, va_list _ap);
 #endif /* H5_HAVE_VASPRINTF */
 #endif /* HDvasprintf */
 #ifndef HDva_arg
diff --git a/src/H5system.c b/src/H5system.c
index 144e0bc..4a40a2a 100644
--- a/src/H5system.c
+++ b/src/H5system.c
@@ -97,131 +97,6 @@ HDvasprintf(char **bufp, const char *fmt, va_list _ap)
 #endif /* H5_HAVE_VASPRINTF */
 
 /*-------------------------------------------------------------------------
- * Function:  HDstrtoll
- *
- * Purpose:  Converts the string S to an int64_t value according to the
- *    given BASE, which must be between 2 and 36 inclusive, or be
- *    the special value zero.
- *
- *    The string must begin with an arbitrary amount of white space
- *    (as determined by isspace(3c)) followed by a single optional
- *              `+' or `-' sign.  If BASE is zero or 16 the string may then
- *    include a `0x' or `0X' prefix, and the number will be read in
- *    base 16; otherwise a zero BASE is taken as 10 (decimal)
- *    unless the next character is a `0', in which case it is taken
- *    as 8 (octal).
- *
- *    The remainder of the string is converted to an int64_t in the
- *    obvious manner, stopping at the first character which is not
- *    a valid digit in the given base.  (In bases above 10, the
- *    letter `A' in either upper or lower case represetns 10, `B'
- *    represents 11, and so forth, with `Z' representing 35.)
- *
- *    If REST is not null, the address of the first invalid
- *    character in S is stored in *REST.  If there were no digits
- *    at all, the original value of S is stored in *REST.  Thus, if
- *    *S is not `\0' but **REST is `\0' on return the entire string
- *    was valid.
- *
- * Return:  Success:  The result.
- *
- *    Failure:  If the input string does not contain any
- *        digits then zero is returned and REST points
- *        to the original value of S.  If an overflow
- *        or underflow occurs then the maximum or
- *        minimum possible value is returned and the
- *        global `errno' is set to ERANGE.  If BASE is
- *        incorrect then zero is returned.
- *
- * Programmer:  Robb Matzke
- *              Thursday, April  9, 1998
- *
- *-------------------------------------------------------------------------
- */
-#ifndef HDstrtoll
-int64_t
-HDstrtoll(const char *s, const char **rest, int base)
-{
-    int64_t sign = 1, acc = 0;
-    hbool_t overflow = FALSE;
-
-    errno = 0;
-    if (!s || (base && (base < 2 || base > 36))) {
-        if (rest)
-            *rest = s;
-        return 0;
-    }
-
-    /* Skip white space */
-    while (HDisspace(*s))
-        s++;
-
-    /* Optional minus or plus sign */
-    if ('+' == *s) {
-        s++;
-    }
-    else if ('-' == *s) {
-        sign = -1;
-        s++;
-    }
-
-    /* Zero base prefix */
-    if (0 == base && '0' == *s && ('x' == s[1] || 'X' == s[1])) {
-        base = 16;
-        s += 2;
-    }
-    else if (0 == base && '0' == *s) {
-        base = 8;
-        s++;
-    }
-    else if (0 == base) {
-        base = 10;
-    }
-
-    /* Digits */
-    while ((base <= 10 && *s >= '0' && *s < '0' + base) ||
-           (base > 10 && ((*s >= '0' && *s <= '9') || (*s >= 'a' && *s < 'a' + base - 10) ||
-                          (*s >= 'A' && *s < 'A' + base - 10)))) {
-        if (!overflow) {
-            int64_t digit = 0;
-
-            if (*s >= '0' && *s <= '9')
-                digit = *s - '0';
-            else if (*s >= 'a' && *s <= 'z')
-                digit = (*s - 'a') + 10;
-            else
-                digit = (*s - 'A') + 10;
-
-            if (acc * base + digit < acc) {
-                overflow = TRUE;
-            }
-            else {
-                acc = acc * base + digit;
-            }
-        }
-        s++;
-    }
-
-    /* Overflow */
-    if (overflow) {
-        if (sign > 0) {
-            acc = ((uint64_t)1 << (8 * sizeof(int64_t) - 1)) - 1;
-        }
-        else {
-            acc = (int64_t)((uint64_t)1 << (8 * sizeof(int64_t) - 1));
-        }
-        errno = ERANGE;
-    }
-
-    /* Return values */
-    acc *= sign;
-    if (rest)
-        *rest = s;
-    return acc;
-} /* end HDstrtoll() */
-#endif
-
-/*-------------------------------------------------------------------------
  * Function:  HDrand/HDsrand
  *
  * Purpose:  Wrapper function for rand.  If rand_r exists on this system,
@@ -964,10 +839,7 @@ done:
  *              Note that commodity hardware is probably going to have a
  *              resolution of milliseconds, not nanoseconds.
  *
- * Return:      SUCCEED/FAIL
- *
- * Programmer:  Quincey Koziol
- *              October 01, 2016
+ * Return:      void
  *--------------------------------------------------------------------------
  */
 void
@@ -976,21 +848,40 @@ H5_nanosleep(uint64_t nanosec)
     FUNC_ENTER_NOAPI_NOINIT_NOERR
 
 #ifdef H5_HAVE_WIN32_API
+    DWORD dwMilliseconds = (DWORD)HDceil(nanosec / 1.0e6);
+    DWORD ignore;
 
-    /* On Windows, Sleep() is in milliseconds. Passing 0 to Sleep()
-     * causes the thread to relinquish the rest of its time slice.
+    /* Windows can't sleep at a ns resolution. Best we can do is ~1 ms. We
+     * don't care about the return value since the second parameter
+     * (bAlertable) is FALSE, so it will always be zero.
      */
-    Sleep(nanosec / (1000 * 1000));
+    ignore = SleepEx(dwMilliseconds, FALSE);
 
 #else
-    {
-        struct timespec sleeptime; /* Struct to hold time to sleep */
 
-        /* Set up time to sleep */
-        sleeptime.tv_sec  = 0;
-        sleeptime.tv_nsec = (long)nanosec;
+    const uint64_t  nanosec_per_sec = 1000 * 1000 * 1000;
+    struct timespec sleeptime; /* Struct to hold time to sleep */
 
-        HDnanosleep(&sleeptime, NULL);
+    /* Set up time to sleep
+     *
+     * Assuming ILP32 or LP64 or wider architecture, (long)operand
+     * satisfies 0 <= operand < nanosec_per_sec < LONG_MAX.
+     *
+     * It's harder to be sure that we don't overflow time_t.
+     */
+    sleeptime.tv_sec  = (time_t)(nanosec / nanosec_per_sec);
+    sleeptime.tv_nsec = (long)(nanosec % nanosec_per_sec);
+
+    /* Sleep for up to `sleeptime` and, in the event of an interruption,
+     * save the unslept time back to `sleeptime`.
+     */
+    while (HDnanosleep(&sleeptime, &sleeptime) == -1) {
+        /* If we were just interrupted, sleep for the remaining time.
+         * Otherwise, the error was essentially impossible, so just stop
+         * sleeping.
+         */
+        if (errno != EINTR)
+            break;
     }
 #endif
 
diff --git a/src/H5win32defs.h b/src/H5win32defs.h
index 88911b0..0617643 100644
--- a/src/H5win32defs.h
+++ b/src/H5win32defs.h
@@ -45,7 +45,6 @@ typedef __int64         h5_stat_size_t;
 #define HDlseek(F, O, W)   _lseeki64(F, O, W)
 #define HDlstat(S, B)      _lstati64(S, B)
 #define HDmkdir(S, M)      _mkdir(S)
-#define HDnanosleep(N, O)  Wnanosleep(N, O)
 #define HDoff_t            __int64
 
 /* Note that the variadic HDopen macro is using a VC++ extension
diff --git a/test/tarray.c b/test/tarray.c
index 10480fe..61db84c 100644
--- a/test/tarray.c
+++ b/test/tarray.c
@@ -157,8 +157,9 @@ test_array_atomic_1d(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -490,8 +491,9 @@ test_array_array_atomic(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims1; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -668,8 +670,9 @@ test_array_compound_atomic(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -889,8 +892,9 @@ test_array_compound_array(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -951,9 +955,9 @@ test_array_compound_array(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf(
-                "Nested array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Nested array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -1210,8 +1214,9 @@ test_array_vlen_atomic(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -1440,8 +1445,9 @@ test_array_vlen_array(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -1472,8 +1478,9 @@ test_array_vlen_array(void)
     /* Check the array dimensions */
     for (i = 0; i < ndims; i++)
         if (rdims1[i] != tdims1[i]) {
-            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                          rdims1[i], i, tdims1[i]);
+            TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                          ", tdims1[%d]=%" PRIuHSIZE "\n",
+                          i, rdims1[i], i, tdims1[i]);
             continue;
         } /* end if */
 
@@ -2081,9 +2088,9 @@ test_compat(void)
         /* Check the array dimensions */
         for (i = 0; i < ndims; i++)
             if (rdims1[i] != tdims1[i]) {
-                TestErrPrintf(
-                    "Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                    rdims1[i], i, tdims1[i]);
+                TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                              ", tdims1[%d]=%" PRIuHSIZE "\n",
+                              i, rdims1[i], i, tdims1[i]);
                 continue;
             } /* end if */
 
@@ -2129,9 +2136,9 @@ test_compat(void)
         /* Check the array dimensions */
         for (i = 0; i < ndims; i++)
             if (rdims1[i] != tdims1[i]) {
-                TestErrPrintf(
-                    "Array dimension information doesn't match!, rdims1[%d]=%llu, tdims1[%d]=%llu\n", i,
-                    rdims1[i], i, tdims1[i]);
+                TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%" PRIuHSIZE
+                              ", tdims1[%d]=%" PRIuHSIZE "\n",
+                              i, rdims1[i], i, tdims1[i]);
                 continue;
             } /* end if */
 
diff --git a/tools/test/perform/iopipe.c b/tools/test/perform/iopipe.c
index d0db06a..2aa9e25 100644
--- a/tools/test/perform/iopipe.c
+++ b/tools/test/perform/iopipe.c
@@ -95,7 +95,6 @@ print_stats(const char *prefix,
 static void
 synchronize(void)
 {
-#ifdef H5_HAVE_SYSTEM
 #if defined(H5_HAVE_WIN32_API) && !defined(__CYGWIN__)
     _flushall();
 #else
@@ -107,7 +106,6 @@ synchronize(void)
     status = HDsystem("df >/dev/null");
     HDassert(status >= 0);
 #endif
-#endif
 }
 
 /*-------------------------------------------------------------------------
diff --git a/tools/test/perform/sio_engine.c b/tools/test/perform/sio_engine.c
index f67a7a6..1af2318 100644
--- a/tools/test/perform/sio_engine.c
+++ b/tools/test/perform/sio_engine.c
@@ -1264,13 +1264,6 @@ done:
  * Programmer:  Albert Cheng 2001/12/12
  * Modifications: Support for file drivers. Christian Chilan, April, 2008
  */
-/* Disable warning for "format not a string literal" here -QAK */
-/*
- *      This pragma only needs to surround the snprintf() calls with
- *      'temp' in the code below, but early (4.4.7, at least) gcc only
- *      allows diagnostic pragmas to be toggled outside of functions.
- */
-H5_GCC_DIAG_OFF("format-nonliteral")
 static void
 do_cleanupfile(iotype iot, char *filename)
 {
@@ -1333,4 +1326,3 @@ do_cleanupfile(iotype iot, char *filename)
         }
     }
 }
-H5_GCC_DIAG_ON("format-nonliteral")
author	Larry Knox <lrknox@hdfgroup.org>	2021-07-26 17:12:50 (GMT)
committer	GitHub <noreply@github.com>	2021-07-26 17:12:50 (GMT)
commit	8590e58ebb4ebea81c743a876f784b9a38fa84bc (patch)
tree	9195cbf42b1bfc293f13eb1ff8155c34a2db9329
parent	1aa2c3421bef7ccd3610392d06c1856362c37312 (diff)
download	hdf5-8590e58ebb4ebea81c743a876f784b9a38fa84bc.zip hdf5-8590e58ebb4ebea81c743a876f784b9a38fa84bc.tar.gz hdf5-8590e58ebb4ebea81c743a876f784b9a38fa84bc.tar.bz2