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| author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2022-06-09 21:29:04 (GMT) |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-06-09 21:29:04 (GMT) |
| commit | 0311d4c00a14ad2268c3b2aaa4a248c423afdbc8 (patch) | |
| tree | 5fd961a0cf50912145cb0e2420566913170726d4 | |
| parent | b2794b474acaf9050b03239502056bdd34975db8 (diff) | |
| download | hdf5-0311d4c00a14ad2268c3b2aaa4a248c423afdbc8.zip hdf5-0311d4c00a14ad2268c3b2aaa4a248c423afdbc8.tar.gz hdf5-0311d4c00a14ad2268c3b2aaa4a248c423afdbc8.tar.bz2 | |
Hdf5 1 10 sync (#1795)
* Branch sync updates and spelling
* Revert format of getenv
78 files changed, 309 insertions, 276 deletions
diff --git a/CMakeInstallation.cmake b/CMakeInstallation.cmake index 4411c8b..1fe516c 100644 --- a/CMakeInstallation.cmake +++ b/CMakeInstallation.cmake @@ -391,13 +391,19 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES) set (CPACK_PACKAGING_INSTALL_PREFIX "/${CPACK_PACKAGE_INSTALL_DIRECTORY}") set (CPACK_COMPONENTS_ALL_IN_ONE_PACKAGE ON) + list (APPEND CPACK_GENERATOR "DEB") set (CPACK_DEBIAN_PACKAGE_SECTION "Libraries") set (CPACK_DEBIAN_PACKAGE_MAINTAINER "${HDF5_PACKAGE_BUGREPORT}") -# list (APPEND CPACK_GENERATOR "RPM") + list (APPEND CPACK_GENERATOR "RPM") set (CPACK_RPM_PACKAGE_RELEASE "1") + set (CPACK_RPM_PACKAGE_RELEASE_DIST ON) set (CPACK_RPM_COMPONENT_INSTALL ON) set (CPACK_RPM_PACKAGE_RELOCATABLE ON) + set (CPACK_RPM_FILE_NAME "RPM-DEFAULT") + set (CPACK_RPM_PACKAGE_NAME "${CPACK_PACKAGE_NAME}") + set (CPACK_RPM_PACKAGE_VERSION "${CPACK_PACKAGE_VERSION}") + set (CPACK_RPM_PACKAGE_VENDOR "${CPACK_PACKAGE_VENDOR}") set (CPACK_RPM_PACKAGE_LICENSE "BSD-style") set (CPACK_RPM_PACKAGE_GROUP "Development/Libraries") set (CPACK_RPM_PACKAGE_URL "${HDF5_PACKAGE_URL}") @@ -438,11 +444,11 @@ The HDF5 data model, file format, API, library, and tools are open and distribut if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ") if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL) if (WIN32) - set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;ALL;/") + set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};HDF5_ZLIB;ALL;/") else () - set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;libraries;/") - set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;headers;/") - set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;configinstall;/") + set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};HDF5_ZLIB;libraries;/") + set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};HDF5_ZLIB;headers;/") + set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};HDF5_ZLIB;configinstall;/") endif () endif () if (SZIP_FOUND AND SZIP_USE_EXTERNAL) diff --git a/Makefile.am b/Makefile.am index fede167..93ba55e 100644 --- a/Makefile.am +++ b/Makefile.am @@ -88,9 +88,9 @@ else TOOLS_DIR= endif -SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin utils $(TOOLS_DIR) . \ +SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) utils . \ $(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR) -DIST_SUBDIRS = src test testpar utils tools . c++ fortran hl examples java +DIST_SUBDIRS = src test testpar tools utils . c++ fortran hl examples java # Some files generated during configure that should be cleaned DISTCLEANFILES=config/stamp1 config/stamp2 @@ -2,9 +2,6 @@ HDF5 version 1.10.10-1 currently under development  -[](https://github.com/HDFGroup/hdf5/actions?query=branch%3Adevelop) -[](https://github.com/HDFGroup/hdf5/blob/develop/COPYING) - *Please refer to the release_docs/INSTALL file for installation instructions.* THE HDF GROUP diff --git a/config/cmake/HDF5_Examples.cmake.in b/config/cmake/HDF5_Examples.cmake.in index be69e64..cda4062 100644 --- a/config/cmake/HDF5_Examples.cmake.in +++ b/config/cmake/HDF5_Examples.cmake.in @@ -77,7 +77,7 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDN #TAR_SOURCE - name of tarfile #if(NOT DEFINED TAR_SOURCE) -# set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.10.17-Source") +# set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.10.18-Source") #endif() ############################################################################################################### diff --git a/config/cmake/HDFCXXCompilerFlags.cmake b/config/cmake/HDFCXXCompilerFlags.cmake index 958fe73..dcc96cf 100644 --- a/config/cmake/HDFCXXCompilerFlags.cmake +++ b/config/cmake/HDFCXXCompilerFlags.cmake @@ -9,6 +9,8 @@ # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # +ENABLE_LANGUAGE (CXX) + set (CMAKE_CXX_STANDARD 98) set (CMAKE_CXX_STANDARD_REQUIRED TRUE) diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake index eb43b73..61218dc 100644 --- a/config/cmake/HDFCompilerFlags.cmake +++ b/config/cmake/HDFCompilerFlags.cmake @@ -231,6 +231,7 @@ if (CMAKE_C_COMPILER_ID STREQUAL "GNU") # Append more extra warning flags that only gcc 7.x+ knows about if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 7.0) ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/7") + ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/error-7") if (HDF5_ENABLE_DEV_WARNINGS) ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/developer-7") #else () diff --git a/config/cmake_ext_mod/ConfigureChecks.cmake b/config/cmake_ext_mod/ConfigureChecks.cmake index f022a4c..41f53e1 100644 --- a/config/cmake_ext_mod/ConfigureChecks.cmake +++ b/config/cmake_ext_mod/ConfigureChecks.cmake @@ -253,65 +253,63 @@ set (LINUX_LFS 0) set (HDF_EXTRA_C_FLAGS) set (HDF_EXTRA_FLAGS) if (MINGW OR NOT WINDOWS) - # Might want to check explicitly for Linux and possibly Cygwin - # instead of checking for not Solaris or Darwin. - if (NOT ${HDF_PREFIX}_HAVE_SOLARIS AND NOT ${HDF_PREFIX}_HAVE_DARWIN) - # Linux Specific flags - # This was originally defined as _POSIX_SOURCE which was updated to - # _POSIX_C_SOURCE=199506L to expose a greater amount of POSIX - # functionality so clock_gettime and CLOCK_MONOTONIC are defined - # correctly. This was later updated to 200112L so that - # posix_memalign() is visible for the direct VFD code on Linux - # systems. - # POSIX feature information can be found in the gcc manual at: - # http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.html - set (HDF_EXTRA_C_FLAGS -D_POSIX_C_SOURCE=200809L) - - # Need to add this so that O_DIRECT is visible for the direct - # VFD on Linux systems. - set (HDF_EXTRA_C_FLAGS ${HDF_EXTRA_C_FLAGS} -D_GNU_SOURCE) - - option (HDF_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON) - if (HDF_ENABLE_LARGE_FILE AND NOT DEFINED TEST_LFS_WORKS_RUN) - set (msg "Performing TEST_LFS_WORKS") - try_run (TEST_LFS_WORKS_RUN TEST_LFS_WORKS_COMPILE - ${CMAKE_BINARY_DIR} - ${HDF_RESOURCES_EXT_DIR}/HDFTests.c - COMPILE_DEFINITIONS "-DTEST_LFS_WORKS" - ) + if (CMAKE_SYSTEM_NAME MATCHES "Linux") + # Linux Specific flags + # This was originally defined as _POSIX_SOURCE which was updated to + # _POSIX_C_SOURCE=199506L to expose a greater amount of POSIX + # functionality so clock_gettime and CLOCK_MONOTONIC are defined + # correctly. This was later updated to 200112L so that + # posix_memalign() is visible for the direct VFD code on Linux + # systems. + # POSIX feature information can be found in the gcc manual at: + # http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.html + set (HDF_EXTRA_C_FLAGS -D_POSIX_C_SOURCE=200809L) + + # Need to add this so that O_DIRECT is visible for the direct + # VFD on Linux systems. + set (HDF_EXTRA_C_FLAGS ${HDF_EXTRA_C_FLAGS} -D_GNU_SOURCE) + + option (HDF_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON) + if (HDF_ENABLE_LARGE_FILE AND NOT DEFINED TEST_LFS_WORKS_RUN) + set (msg "Performing TEST_LFS_WORKS") + try_run (TEST_LFS_WORKS_RUN TEST_LFS_WORKS_COMPILE + ${CMAKE_BINARY_DIR} + ${HDF_RESOURCES_EXT_DIR}/HDFTests.c + COMPILE_DEFINITIONS "-DTEST_LFS_WORKS" + ) - # The LARGEFILE definitions were from the transition period - # and are probably no longer needed. The FILE_OFFSET_BITS - # check should be generalized for all POSIX systems as it - # is in the Autotools. - if (TEST_LFS_WORKS_COMPILE) - if (TEST_LFS_WORKS_RUN MATCHES 0) - set (TEST_LFS_WORKS 1 CACHE INTERNAL ${msg}) - set (LARGEFILE 1) - set (HDF_EXTRA_FLAGS ${HDF_EXTRA_FLAGS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE) - if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0") - message (VERBOSE "${msg}... yes") + # The LARGEFILE definitions were from the transition period + # and are probably no longer needed. The FILE_OFFSET_BITS + # check should be generalized for all POSIX systems as it + # is in the Autotools. + if (TEST_LFS_WORKS_COMPILE) + if (TEST_LFS_WORKS_RUN MATCHES 0) + set (TEST_LFS_WORKS 1 CACHE INTERNAL ${msg}) + set (LARGEFILE 1) + set (HDF_EXTRA_FLAGS ${HDF_EXTRA_FLAGS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE) + if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0") + message (VERBOSE "${msg}... yes") + endif () + else () + set (TEST_LFS_WORKS "" CACHE INTERNAL ${msg}) + if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0") + message (VERBOSE "${msg}... no") + endif () + file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log + "Test TEST_LFS_WORKS Run failed with the following exit code:\n ${TEST_LFS_WORKS_RUN}\n" + ) endif () else () set (TEST_LFS_WORKS "" CACHE INTERNAL ${msg}) if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0") - message (VERBOSE "${msg}... no") + message (VERBOSE "${msg}... no") endif () file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "Test TEST_LFS_WORKS Run failed with the following exit code:\n ${TEST_LFS_WORKS_RUN}\n" + "Test TEST_LFS_WORKS Compile failed\n" ) endif () - else () - set (TEST_LFS_WORKS "" CACHE INTERNAL ${msg}) - if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0") - message (VERBOSE "${msg}... no") - endif () - file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "Test TEST_LFS_WORKS Compile failed\n" - ) endif () - endif () - set (CMAKE_REQUIRED_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS} ${HDF_EXTRA_FLAGS}) + set (CMAKE_REQUIRED_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS} ${HDF_EXTRA_FLAGS}) endif () endif () @@ -559,7 +557,6 @@ if (MINGW OR NOT WINDOWS) foreach (other_test HAVE_ATTRIBUTE HAVE_C99_FUNC -# STDC_HEADERS HAVE_FUNCTION HAVE_C99_DESIGNATED_INITIALIZER SYSTEM_SCOPE_THREADS diff --git a/config/cmake_ext_mod/HDFMacros.cmake b/config/cmake_ext_mod/HDFMacros.cmake index 0f9b367..260fd55 100644 --- a/config/cmake_ext_mod/HDFMacros.cmake +++ b/config/cmake_ext_mod/HDFMacros.cmake @@ -267,10 +267,14 @@ macro (HDF_README_PROPERTIES target_fortran) elseif (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.*") if (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.0.*") set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2015") - elseif (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.16.*") + elseif (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.1.*") set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2017") - else () #19.23 + elseif (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.2.*") set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2019") + elseif (${CMAKE_C_COMPILER_VERSION} MATCHES "^19.3.*") + set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2022") + else () + set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO ???") endif () else () set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO ${CMAKE_C_COMPILER_VERSION}") diff --git a/config/gnu-flags b/config/gnu-flags index fe6626d..e25f59b 100644 --- a/config/gnu-flags +++ b/config/gnu-flags @@ -254,6 +254,7 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc >= 7 if test $cc_vers_major -ge 7; then H5_CFLAGS="$H5_CFLAGS $(load_gnu_arguments 7)" + H5_ECFLAGS="$H5_ECFLAGS $(load_gnu_arguments error-7)" DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS $(load_gnu_arguments developer-7)" fi diff --git a/config/gnu-warnings/7 b/config/gnu-warnings/7 index 9d5b44d..cb8834a 100644 --- a/config/gnu-warnings/7 +++ b/config/gnu-warnings/7 @@ -3,4 +3,3 @@ -Wduplicated-branches -Wformat-overflow=2 -Wformat-truncation=1 --Wrestrict diff --git a/config/gnu-warnings/cxx-general b/config/gnu-warnings/cxx-general index 9548cc0..1626524 100644 --- a/config/gnu-warnings/cxx-general +++ b/config/gnu-warnings/cxx-general @@ -17,7 +17,6 @@ -Winit-self -Winvalid-pch -Wmissing-include-dirs --Wno-format-nonliteral -Wnon-virtual-dtor -Wold-style-cast -Woverloaded-virtual diff --git a/config/gnu-warnings/developer-general b/config/gnu-warnings/developer-general index b34c4b7..460b874 100644 --- a/config/gnu-warnings/developer-general +++ b/config/gnu-warnings/developer-general @@ -1,9 +1,6 @@ # (suggestions from gcc, not code problems) -# NOTE: -Wformat-nonliteral added back in here (from being disabled in -# H5_CFLAGS) -Waggregate-return -Wdisabled-optimization --Wformat-nonliteral -Winline -Wmissing-format-attribute -Wmissing-noreturn diff --git a/config/gnu-warnings/error-7 b/config/gnu-warnings/error-7 new file mode 100644 index 0000000..8eb9fe4 --- /dev/null +++ b/config/gnu-warnings/error-7 @@ -0,0 +1 @@ +-Werror=restrict diff --git a/config/gnu-warnings/general b/config/gnu-warnings/general index a7a20b7..df4c613 100644 --- a/config/gnu-warnings/general +++ b/config/gnu-warnings/general @@ -15,18 +15,12 @@ -Winit-self -Winvalid-pch -Wmissing-include-dirs -# +-Wshadow +-Wundef +-Wwrite-strings +-pedantic # NOTE: Due to the divergence in the C and C++, we're dropping support for # compiling the C library with a C++ compiler and dropping the -Wc++-compat # warning. # -Wno-c++-compat -# -# NOTE: Disable the -Wformat-nonliteral from -Wformat=2 here and re-add -# it to the developer flags. -# --Wno-format-nonliteral --Wshadow --Wundef --Wwrite-strings --pedantic diff --git a/config/ibm-aix b/config/ibm-aix index b4a558d..f48f9d8 100644 --- a/config/ibm-aix +++ b/config/ibm-aix @@ -47,10 +47,10 @@ if test "X-" = "X-$FC"; then fi fi -# While we try to avoid setting FCFLAGS directly for use in compilation, in -# this case we need the -k flag present for some configure checks. As such, -# the configure script saves the user's set FCFLAGS before running, and -# restores them when complete. We must then set up both FCFLAGS and H5_FCFLAGS +# While we try to avoid setting FCFLAGS directly for use in compilation, in +# this case we need the -k flag present for some configure checks. As such, +# the configure script saves the user's set FCFLAGS before running, and +# restores them when complete. We must then set up both FCFLAGS and H5_FCFLAGS # to ensure the flag is present for both configure as well as for the build. if test "X-" = "X-$f9x_flags_set"; then F9XSUFFIXFLAG="-qsuffix=f=f90" diff --git a/configure.ac b/configure.ac index bba51a7..16a67ca 100644 --- a/configure.ac +++ b/configure.ac @@ -1118,7 +1118,7 @@ AC_MSG_CHECKING([if HDF5 testing intensity level is set]) AC_ARG_ENABLE([test-express], [AS_HELP_STRING([--enable-test-express=(0-3)], - [Set HDF5 testing intensity level (0-3) [0 = exhaustive testing; 3 = quicker testing; default=3] Set environment variable HDF5TestExpress to override configured setting])], + [Set HDF5 testing intensity level (0-3) [0 = exhaustive testing; 3 = quicker testing; default=3] Set environment variable HDF5TestExpress to override configured setting])], [TEST_EXPRESS_LEVEL_DEFAULT=$enableval]) case "X-$TEST_EXPRESS_LEVEL_DEFAULT" in @@ -1203,6 +1203,7 @@ if test "X$HDF5_DOXYGEN" = "Xyes"; then AC_SUBST([DOXYGEN_EXTERNAL_SEARCH]) AC_SUBST([DOXYGEN_SEARCHENGINE_URL]) AC_SUBST([DOXYGEN_STRIP_FROM_PATH]) + AC_SUBST([DOXYGEN_STRIP_FROM_INC_PATH]) AC_SUBST([DOXYGEN_PREDEFINED]) # SRCDIR Environment variables used inside doxygen macro for the source location: @@ -1210,7 +1211,7 @@ if test "X$HDF5_DOXYGEN" = "Xyes"; then DOXYGEN_VERSION_STRING=${PACKAGE_VERSION} DOXYGEN_INCLUDE_ALIASES='$(SRCDIR)/doxygen/aliases' DOXYGEN_PROJECT_LOGO='$(SRCDIR)/doxygen/img/HDFG-logo.png' - DOXYGEN_PROJECT_BRIEF='C-API Reference' + DOXYGEN_PROJECT_BRIEF='' DOXYGEN_INPUT_DIRECTORY='$(SRCDIR) $(SRCDIR)/doxygen/dox' DOXYGEN_OPTIMIZE_OUTPUT_FOR_C=YES DOXYGEN_MACRO_EXPANSION=YES @@ -1226,6 +1227,7 @@ if test "X$HDF5_DOXYGEN" = "Xyes"; then DOXYGEN_EXTERNAL_SEARCH=NO DOXYGEN_SEARCHENGINE_URL= DOXYGEN_STRIP_FROM_PATH='$(SRCDIR)' + DOXYGEN_STRIP_FROM_INC_PATH='$(SRCDIR)' DOXYGEN_PREDEFINED='H5_HAVE_DIRECT H5_HAVE_LIBHDFS H5_HAVE_MAP_API H5_HAVE_PARALLEL H5_HAVE_ROS3_VFD' DX_INIT_DOXYGEN([HDF5], [./doxygen/Doxyfile], [hdf5lib_docs]) @@ -2017,8 +2019,10 @@ if test "X$THREADSAFE" = "Xyes"; then AC_CACHE_VAL([hdf5_cv_system_scope_threads], [AC_RUN_IFELSE( [AC_LANG_PROGRAM([ + #if STDC_HEADERS #include <stdlib.h> #include <pthread.h> + #endif ],[ pthread_attr_t attribute; int ret; diff --git a/examples/testh5cc.sh.in b/examples/testh5cc.sh.in index 5af0453..8349cae 100644 --- a/examples/testh5cc.sh.in +++ b/examples/testh5cc.sh.in @@ -77,7 +77,7 @@ applib=libapp${H5TOOL}.a # short hands # Caution: if some *.h5 files must be cleaned here, list them by names. # Don't use the wildcard form of *.h5 as it will wipe out even *.h5 generated -# by otehr test programs. This will cause a racing condition error when +# by other test programs. This will cause a racing condition error when # parallel make (e.g., gmake -j 4) is used. temp_SRC="$hdf5main $v16main $v18main $v110main $appmain $prog1 $prog2" temp_OBJ=`echo $temp_SRC | sed -e "s/\.${suffix}/.o/g"` @@ -112,6 +112,8 @@ EOF # generate prog1 cat > $prog1 <<EOF +#include <stdio.h> +void sub1(void) { printf("in sub1\n"); @@ -120,6 +122,8 @@ EOF # generate prog2 cat > $prog2 <<EOF +#include <stdio.h> +void sub2(void) { printf("in sub2\n"); diff --git a/hl/c++/test/ptableTest.cpp b/hl/c++/test/ptableTest.cpp index 2600367..bbc702e 100644 --- a/hl/c++/test/ptableTest.cpp +++ b/hl/c++/test/ptableTest.cpp @@ -223,7 +223,7 @@ TestGetNext() for (record = 1; record < 6; record++) wrapper.AppendPacket(&record); - /* Ensure that we can interate through the records and get the right ones */ + /* Ensure that we can iterate through the records and get the right ones */ for (i = 1; i < 6; i++) { wrapper.GetNextPacket(&record); if (record != i) @@ -237,7 +237,7 @@ TestGetNext() if (error < 0) goto error; - /* Ensure that we can interate through the records and get the right ones */ + /* Ensure that we can iterate through the records and get the right ones */ for (i = 1; i < 6; i++) { error = wrapper.GetNextPacket(&record); if (record != i || error < 0) @@ -605,8 +605,8 @@ const int STRING_LENGTH = 19; // including terminating NULL int TestHDFFV_9758() { - hid_t strtype; - hid_t compound_type; + hid_t strtype = H5I_INVALID_HID; + hid_t compound_type = H5I_INVALID_HID; herr_t err; struct s1_t { int a; diff --git a/hl/examples/ex_image1.c b/hl/examples/ex_image1.c index ead1715..1294ab3 100644 --- a/hl/examples/ex_image1.c +++ b/hl/examples/ex_image1.c @@ -56,10 +56,10 @@ main(void) H5IMmake_image_8bit(file_id, "image1", (hsize_t)WIDTH, (hsize_t)HEIGHT, buf); /* make a palette */ - H5IMmake_palette(file_id, "pallete", pal_dims, pal); + H5IMmake_palette(file_id, "palette", pal_dims, pal); /* attach the palette to the image */ - H5IMlink_palette(file_id, "image1", "pallete"); + H5IMlink_palette(file_id, "image1", "palette"); /* close the file. */ H5Fclose(file_id); diff --git a/hl/src/H5DO.c b/hl/src/H5DO.c index 3bdb4e2..1703669 100644 --- a/hl/src/H5DO.c +++ b/hl/src/H5DO.c @@ -182,7 +182,7 @@ H5DOappend(hid_t dset_id, hid_t dxpl_id, unsigned axis, size_t extension, hid_t if (FAIL == H5Sselect_hyperslab(new_space_id, H5S_SELECT_SET, start, stride, count, block)) goto done; - /* The # of elemnts in the new extended dataspace */ + /* The # of elements in the new extended dataspace */ if ((snelmts = H5Sget_select_npoints(new_space_id)) < 0) goto done; nelmts = (hsize_t)snelmts; diff --git a/hl/tools/gif2h5/decompress.c b/hl/tools/gif2h5/decompress.c index 64d9643..ca33f86 100644 --- a/hl/tools/gif2h5/decompress.c +++ b/hl/tools/gif2h5/decompress.c @@ -178,7 +178,7 @@ Decompress(GIFIMAGEDESC *GifImageDesc, GIFHEAD *GifHead) DataMask = (1 << ((GifHead->PackedField & 0x07) + 1)) - 1; Raster = GifImageDesc->GIFImage; - /* Check for image seperator */ + /* Check for image separator */ /* Now read in values from the image descriptor */ IWidth = GifImageDesc->ImageWidth; @@ -193,7 +193,7 @@ Decompress(GIFIMAGEDESC *GifImageDesc, GIFHEAD *GifHead) */ /* - * Start reading the raster data. First we get the intial code size and + * Start reading the raster data. First we get the initial code size and * compute decompressor constant values, based on this code size. */ diff --git a/hl/tools/gif2h5/gif.h b/hl/tools/gif2h5/gif.h index 1a8cfe4..5ea8633 100644 --- a/hl/tools/gif2h5/gif.h +++ b/hl/tools/gif2h5/gif.h @@ -129,7 +129,7 @@ typedef struct _GifCommentExtension { ** in the HDF file. ** I have assumed that the ImageDescriptors and GraphicControls follow ** one another, ie. I have not associated them with each other. The driver -** must assume a 1-1 correspondance. The same discussion with plain text +** must assume a 1-1 correspondence. The same discussion with plain text ** extension. */ typedef struct _GifToMem { diff --git a/hl/tools/gif2h5/gif2mem.c b/hl/tools/gif2h5/gif2mem.c index c66250b..2c2225e 100644 --- a/hl/tools/gif2h5/gif2mem.c +++ b/hl/tools/gif2h5/gif2mem.c @@ -40,7 +40,7 @@ Gif2Mem(GIFBYTE *MemGif, GIFTOMEM *GifMemoryStruct) { /* * The gif structure outline for passing data to memory is given in gif.h. - * These pointers are redunant, should take them out in ver. 2 + * These pointers are redundant, should take them out in ver. 2 */ GIFHEAD * gifHead; /* GIF Header structure */ GIFIMAGEDESC ** gifImageDesc; /* Logical Image Descriptor struct */ diff --git a/hl/tools/gif2h5/gifread.c b/hl/tools/gif2h5/gifread.c index dd9e5be..3a6bcae 100644 --- a/hl/tools/gif2h5/gifread.c +++ b/hl/tools/gif2h5/gifread.c @@ -50,15 +50,15 @@ GetByte(const GIFBYTE *MemGif) * Global Color Table (if any) from a GIF image file. The information * is stored in a GIFHEAD structure. * - * Returns: -1 if a FILE stream error occured during the read, - * otherwise 0 if no error occured. + * Returns: -1 if a FILE stream error occurred during the read, + * otherwise 0 if no error occurred. */ int ReadGifHeader(GIFHEAD * GifHead, /* Pointer to GIF header structure */ GIFBYTE **MemGif2) /* GIF image file input FILE stream */ { GIFWORD i; /* Loop counter */ - GIFWORD tableSize; /* Number of entires in the Global Color Table */ + GIFWORD tableSize; /* Number of entries in the Global Color Table */ GifHead->TableSize = 0; for (i = 0; i < 6; i++) { @@ -103,7 +103,7 @@ ReadGifHeader(GIFHEAD * GifHead, /* Pointer to GIF header structure */ return -1; #endif /* 0 */ - return 0; /* No FILE stream error occured */ + return 0; /* No FILE stream error occurred */ } /* @@ -116,8 +116,8 @@ ReadGifHeader(GIFHEAD * GifHead, /* Pointer to GIF header structure */ ** Note that the ImageSeparator field value in the GIFIMAGEDESC ** structure is assigned by the function calling ReadGifImageDesc(). ** -** Returns: -1 if a FILE stream error occured during the read, -** otherwise 0 if no error occured. +** Returns: -1 if a FILE stream error occurred during the read, +** otherwise 0 if no error occurred. */ int ReadGifImageDesc(GIFIMAGEDESC *GifImageDesc, /* Pointer to GIF image descriptor structure */ @@ -196,7 +196,7 @@ ReadGifImageDesc(GIFIMAGEDESC *GifImageDesc, /* Pointer to GIF image descriptor *TempPtr++ = *(*MemGif2)++; } while (ch1); - return (0); /* No FILE stream error occured */ + return (0); /* No FILE stream error occurred */ } /* @@ -205,8 +205,8 @@ ReadGifImageDesc(GIFIMAGEDESC *GifImageDesc, /* Pointer to GIF image descriptor ** Note that the Introducer and Label field values in the GIFGRAPHICCONTROL ** structure are assigned by the function calling ReadGifGraphicControl(). ** -** Returns: -1 if a FILE stream error occured during the read, -** otherwise 0 if no error occured. +** Returns: -1 if a FILE stream error occurred during the read, +** otherwise 0 if no error occurred. */ int ReadGifGraphicControl(GIFGRAPHICCONTROL *GifGraphicControl, /* Pointer to GC Extension structure */ @@ -219,7 +219,7 @@ ReadGifGraphicControl(GIFGRAPHICCONTROL *GifGraphicControl, /* Pointer to GC Ext GifGraphicControl->GCEDump[i] = *(*MemGif2)++; } - return (0); /* No FILE stream error occured */ + return (0); /* No FILE stream error occurred */ } /* @@ -228,8 +228,8 @@ ReadGifGraphicControl(GIFGRAPHICCONTROL *GifGraphicControl, /* Pointer to GC Ext ** Note that the Introducer and Label field values in the GIFLPLAINTEXT ** structure are assigned by the function calling ReadGifPlainText(). ** -** Returns: -1 if a FILE stream error occured during the read, -** otherwise 0 if no error occured. +** Returns: -1 if a FILE stream error occurred during the read, +** otherwise 0 if no error occurred. */ int ReadGifPlainText(GIFPLAINTEXT *GifPlainText, /* Pointer to Plain Text Extension structure */ @@ -256,7 +256,7 @@ ReadGifPlainText(GIFPLAINTEXT *GifPlainText, /* Pointer to Plain Text Extension return(-1); */ - return (0); /* No FILE stream error occured */ + return (0); /* No FILE stream error occurred */ } /* @@ -265,8 +265,8 @@ ReadGifPlainText(GIFPLAINTEXT *GifPlainText, /* Pointer to Plain Text Extension ** Note that the Introducer and Label field values in the GIFAPPLICATION ** structure are assigned by the function calling ReadGifApplication(). ** -** Returns: -1 if a FILE stream error occured during the read, -** otherwise 0 if no error occured. +** Returns: -1 if a FILE stream error occurred during the read, +** otherwise 0 if no error occurred. */ int ReadGifApplication(GIFAPPLICATION *GifApplication, /* Pointer to Application Extension structure */ @@ -292,7 +292,7 @@ ReadGifApplication(GIFAPPLICATION *GifApplication, /* Pointer to Application Ext return(-1); */ - return (0); /* No FILE stream error occured */ + return (0); /* No FILE stream error occurred */ } /* @@ -301,8 +301,8 @@ ReadGifApplication(GIFAPPLICATION *GifApplication, /* Pointer to Application Ext ** Note that the Introducer and Label field values in the GIFCOMMENT ** structure are assigned by the function calling ReadGifComment(). ** -** Returns: -1 if a FILE stream error occured during the read, -** otherwise 0 if no error occured. +** Returns: -1 if a FILE stream error occurred during the read, +** otherwise 0 if no error occurred. */ int ReadGifComment(GIFCOMMENT *GifComment, /* Pointer to GIF Comment Extension structure */ @@ -316,7 +316,7 @@ ReadGifComment(GIFCOMMENT *GifComment, /* Pointer to GIF Comment Extension struc GifComment->Terminator = 0; - return (0); /* No FILE stream error occured */ + return (0); /* No FILE stream error occurred */ } /* @@ -326,8 +326,8 @@ ReadGifComment(GIFCOMMENT *GifComment, /* Pointer to GIF Comment Extension struc ** A GIF "sub-block" is a single count byte followed by 1 to 255 ** additional data bytes. ** -** Returns: A NULL pointer if a memory allocation error occured, -** otherwise a valid pointer if no error occured. +** Returns: A NULL pointer if a memory allocation error occurred, +** otherwise a valid pointer if no error occurred. */ static GIFBYTE * ReadDataSubBlocks(GIFBYTE **MemGif2, /* GIF image file input FILE stream */ @@ -364,7 +364,7 @@ ReadDataSubBlocks(GIFBYTE **MemGif2, /* GIF image file input FILE stream if ((dataSize = *(*MemGif2)++) == 0) break; /* Block Terminator encountered */ - /* Increase the buffer size to accomodate the next sub-block */ + /* Increase the buffer size to accommodate the next sub-block */ if (!(ptr1 = ptr2 = (GIFBYTE *)realloc(ptr2, bufSize + dataSize + 1))) return ((GIFBYTE *)NULL); diff --git a/hl/tools/gif2h5/h52giftest.sh.in b/hl/tools/gif2h5/h52giftest.sh.in index 2f84ef6..4f4057f 100644 --- a/hl/tools/gif2h5/h52giftest.sh.in +++ b/hl/tools/gif2h5/h52giftest.sh.in @@ -46,7 +46,7 @@ TOOLTEST() # Verify the test runs with failure (return code is not 0) # Use for testing if tool can handle error conditions like -# illegal input, bad arguments, exeeding limits, ... +# illegal input, bad arguments, exceeding limits, ... TOOLTESTFAIL() { # for now, discard any error messages generated. diff --git a/hl/tools/gif2h5/writehdf.c b/hl/tools/gif2h5/writehdf.c index 6ec6af4..c321519 100644 --- a/hl/tools/gif2h5/writehdf.c +++ b/hl/tools/gif2h5/writehdf.c @@ -27,7 +27,7 @@ * Programmer: Unknown * * Modifications: pvn - * Use the HDF5 IMAGE API to write the HDF5 image and pallete + * Use the HDF5 IMAGE API to write the HDF5 image and palette * * Date: January, 31, 2006 * @@ -68,7 +68,7 @@ WriteHDF(GIFTOMEM GifMemoryStruct, char *HDFName) #endif /* UNUSED */ if ((file_id = H5Fcreate(HDFName, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) { - /* error occured opening the HDF File for write */ + /* error occurred opening the HDF File for write */ fprintf(stderr, "HDF file could not be opened for writing\n"); fprintf(stderr, "NOTE: GIF file must be present in the same directory as the binary on UNIX systems.\n"); diff --git a/hl/tools/h5watch/extend_dset.c b/hl/tools/h5watch/extend_dset.c index 07a4053..7756506 100644 --- a/hl/tools/h5watch/extend_dset.c +++ b/hl/tools/h5watch/extend_dset.c @@ -83,7 +83,7 @@ extend_dset_two(const char *file, char *dname, int action1, int action2) size_t dtype_size; /* size of the dataset's datatype */ unsigned num_elmts; /* number of elements in the dataset */ int * ibuf = NULL; /* buffer for storing retrieved elements (integer) */ - set_t * cbuf = NULL; /* buffer for storing retrieved elemnets (compound) */ + set_t * cbuf = NULL; /* buffer for storing retrieved elements (compound) */ /* Allocate memory */ if (NULL == (ibuf = (int *)HDcalloc(TEST_BUF_SIZE, sizeof(int)))) @@ -237,7 +237,7 @@ extend_dset_one(const char *file, char *dname, int action) hsize_t count[1]; /* dimension sizes of appended data */ size_t dtype_size; /* size of the dataset's datatype */ int * ibuf = NULL; /* buffer for storing retrieved elements (integer) */ - set_t * cbuf = NULL; /* buffer for storing retrieved elemnets (compound) */ + set_t * cbuf = NULL; /* buffer for storing retrieved elements (compound) */ /* Allocate memory */ if (NULL == (ibuf = (int *)HDcalloc(TEST_BUF_SIZE, sizeof(int)))) diff --git a/java/examples/datasets/JavaDatasetExample.sh.in b/java/examples/datasets/JavaDatasetExample.sh.in index 9a5ddd8..b299ff2 100644 --- a/java/examples/datasets/JavaDatasetExample.sh.in +++ b/java/examples/datasets/JavaDatasetExample.sh.in @@ -29,6 +29,7 @@ CMP='cmp' DIFF='diff -c' CP='cp' DIRNAME='dirname' +BASENAME='basename' LS='ls' AWK='awk' @@ -103,17 +104,21 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." # Comment out this to CREATE expected file exit $EXIT_FAILURE fi + BNAME=`$BASENAME $tstfile` + if [ "$BNAME" = "libhdf5_java.dylib" ]; then + COPIED_LIBHDF5_JAVA=1 + fi fi fi done - if [ "$IS_DARWIN" = "yes" ]; then + if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then (cd $BLDLIBDIR; \ install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \ exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \ @@ -134,7 +139,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -155,10 +160,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - for tstfile in $COPY_JARTESTFILES - do - $RM $BLDLIBDIR/tstfile - done + $RM -rf $BLDLIBDIR fi } diff --git a/java/examples/datatypes/JavaDatatypeExample.sh.in b/java/examples/datatypes/JavaDatatypeExample.sh.in index c6f5dbc..a82d883 100644 --- a/java/examples/datatypes/JavaDatatypeExample.sh.in +++ b/java/examples/datatypes/JavaDatatypeExample.sh.in @@ -26,6 +26,7 @@ CMP='cmp' DIFF='diff -c' CP='cp' DIRNAME='dirname' +BASENAME='basename' LS='ls' AWK='awk' @@ -100,17 +101,21 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." # Comment out this to CREATE expected file exit $EXIT_FAILURE fi + BNAME=`$BASENAME $tstfile` + if [ "$BNAME" = "libhdf5_java.dylib" ]; then + COPIED_LIBHDF5_JAVA=1 + fi fi fi done - if [ "$IS_DARWIN" = "yes" ]; then + if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then (cd $BLDLIBDIR; \ install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \ exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \ @@ -131,7 +136,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -152,10 +157,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - for tstfile in $COPY_JARTESTFILES - do - $RM $BLDLIBDIR/tstfile - done + $RM -rf $BLDLIBDIR fi } diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in index 86f90bf..1b84ed3 100644 --- a/java/examples/groups/JavaGroupExample.sh.in +++ b/java/examples/groups/JavaGroupExample.sh.in @@ -26,6 +26,7 @@ CMP='cmp' DIFF='diff -c' CP='cp' DIRNAME='dirname' +BASENAME='basename' LS='ls' AWK='awk' @@ -95,17 +96,21 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." # Comment out this to CREATE expected file exit $EXIT_FAILURE fi + BNAME=`$BASENAME $tstfile` + if [ "$BNAME" = "libhdf5_java.dylib" ]; then + COPIED_LIBHDF5_JAVA=1 + fi fi fi done - if [ "$IS_DARWIN" = "yes" ]; then + if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then (cd $BLDLIBDIR; \ install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \ exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \ @@ -126,7 +131,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -147,10 +152,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - for tstfile in $COPY_JARTESTFILES - do - $RM $BLDLIBDIR/tstfile - done + $RM -rf $BLDLIBDIR fi } diff --git a/java/examples/intro/JavaIntroExample.sh.in b/java/examples/intro/JavaIntroExample.sh.in index a095f27..41ed694 100644 --- a/java/examples/intro/JavaIntroExample.sh.in +++ b/java/examples/intro/JavaIntroExample.sh.in @@ -26,6 +26,7 @@ CMP='cmp' DIFF='diff -c' CP='cp' DIRNAME='dirname' +BASENAME='basename' LS='ls' AWK='awk' @@ -89,17 +90,21 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." # Comment out this to CREATE expected file exit $EXIT_FAILURE fi + BNAME=`$BASENAME $tstfile` + if [ "$BNAME" = "libhdf5_java.dylib" ]; then + COPIED_LIBHDF5_JAVA=1 + fi fi fi done - if [ "$IS_DARWIN" = "yes" ]; then + if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then (cd $BLDLIBDIR; \ install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \ exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \ @@ -120,7 +125,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -141,10 +146,7 @@ CLEAN_LIBFILES_AND_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - for tstfile in $COPY_JARTESTFILES - do - $RM $BLDLIBDIR/tstfile - done + $RM -rf $BLDLIBDIR fi } diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index 30035b6..e409cfb 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -876,6 +876,8 @@ public class HDF5Constants { /** */ public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE(); /** */ + public static final int H5R_DSET_REG_REF_BUF_SIZE = H5R_DSET_REG_REF_BUF_SIZE(); + /** */ public static final int H5R_OBJECT = H5R_OBJECT(); /** Define atomic datatypes */ @@ -2300,6 +2302,8 @@ public class HDF5Constants { private static native final int H5R_OBJ_REF_BUF_SIZE(); + private static native final int H5R_DSET_REG_REF_BUF_SIZE(); + private static native final int H5R_OBJECT(); private static native final int H5S_ALL(); diff --git a/java/test/junit.sh.in b/java/test/junit.sh.in index 293067d..9f5334c 100644 --- a/java/test/junit.sh.in +++ b/java/test/junit.sh.in @@ -31,6 +31,7 @@ CMP='cmp' DIFF='diff -c' CP='cp' DIRNAME='dirname' +BASENAME='basename' LS='ls' AWK='awk' @@ -138,17 +139,21 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." # Comment out this to CREATE expected file exit $EXIT_FAILURE fi + BNAME=`$BASENAME $tstfile` + if [ "$BNAME" = "libhdf5_java.dylib" ]; then + COPIED_LIBHDF5_JAVA=1 + fi fi fi done - if [ "$IS_DARWIN" = "yes" ]; then + if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then (cd testlibs; \ install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \ exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \ @@ -169,7 +174,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -192,7 +197,7 @@ COPY_LIBFILES_TO_BLDLIBDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $BLDLIBDIR + $CP -fR $tstfile $BLDLIBDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." @@ -1074,13 +1079,13 @@ if test "X-$BUILD_MODE" = "X-production" ; then TESTING JUnit-TestH5E ($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5E > JUnit-TestH5E.ext) - # Extract file name, line number, version and thread IDs because they may be different - sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ - -e 's/line [0-9]*/line (number)/' \ - -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ - -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ - -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ - JUnit-TestH5E.ext > JUnit-TestH5E.out +# Extract file name, line number, version and thread IDs because they may be different +sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + JUnit-TestH5E.ext > JUnit-TestH5E.out if diff JUnit-TestH5E.out JUnit-TestH5E.txt > /dev/null; then echo " PASSED JUnit-TestH5E" diff --git a/release_docs/INSTALL_Cygwin.txt b/release_docs/INSTALL_Cygwin.txt index 2f6e783..bfa025c 100644 --- a/release_docs/INSTALL_Cygwin.txt +++ b/release_docs/INSTALL_Cygwin.txt @@ -2,7 +2,7 @@ HDF5 Build and Install Instructions for Cygwin ************************************************************************ -This document is a instruction on how to build, test and install HDF5 library on +This document is an instruction on how to build, test and install HDF5 library on Cygwin. See detailed information in hdf5/INSTALL. NOTE: hdf5 can be built with CMake, see the INSTALL_CMake.txt file for more guidance. diff --git a/release_docs/README_HDF5_CMake b/release_docs/README_HDF5_CMake index d25f3f4..5bffc1f 100644 --- a/release_docs/README_HDF5_CMake +++ b/release_docs/README_HDF5_CMake @@ -1,23 +1,23 @@ This tar file contains - build-unix.sh script to build HDF5 with CMake on unix machines - build-unix-hpc.sh script to build HDF5 with CMake on unix machines and run - tests with batch scripts (sbatch). + build-unix.sh script to build HDF5 with CMake on unix machines + build-unix-hpc.sh script to build HDF5 with CMake on unix machines and run + tests with batch scripts (sbatch). CTestScript.cmake - HDF5config.cmake CMake scripts for building HDF5 + HDF5config.cmake CMake scripts for building HDF5 HDF5options.cmake - hdf5-1.10.8 HDF5 1.10.8 source - LIBAEC.tar.gz source for building SZIP replacement - ZLib.tar.gz source for building ZLIB - hdf5_plugins.tar.gz source for building compression plugins + hdf5-1.10.10 HDF5 1.10.10 source + LIBAEC.tar.gz source for building SZIP replacement + ZLib.tar.gz source for building ZLIB + hdf5_plugins.tar.gz source for building compression plugins HDF5Examples-1.10.18-Source.tar.gz source for building examples For more information about building HDF5 with CMake, see USING_HDF5_CMake.txt in -hdf5-1.10.8/release_docs, or +hdf5-1.10.10/release_docs, or https://portal.hdfgroup.org/display/support/Building+HDF5+with+CMake. For more information about building HDF5 with CMake on HPC machines, including -cross compiling on Cray XC40, see README_HPC in hdf5-1.10.8/release_docs. +cross compiling on Cray XC40, see README_HPC in hdf5-1.10.10/release_docs. diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index 175e86f..85ccf45 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -49,17 +49,22 @@ New Features Configuration: ------------- - - + - Library: -------- - - + - + + + Parallel Library: + ----------------- + - Fortran Library: ---------------- - - + - C++ Library: @@ -69,17 +74,17 @@ New Features Java Library: ------------- - - + - Tools: ------ - - + - High-Level APIs: ---------------- - - + - C Packet Table API: @@ -106,22 +111,27 @@ Bug Fixes since HDF5-1.10.9 release =================================== Library ------- - - + - Java Library ------------ - - + - Configuration ------------- - - + - Tools ----- - - + - + + + Performance + ------------- + - Fortran API @@ -131,7 +141,7 @@ Bug Fixes since HDF5-1.10.9 release High-Level Library ------------------ - - + - Fortran High-Level APIs @@ -141,7 +151,7 @@ Bug Fixes since HDF5-1.10.9 release Documentation ------------- - - + - F90 APIs diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 15ad483..ad322b2 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -1197,7 +1197,7 @@ diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, hid_t file2_id, H5TOOLS_DEBUG("Beginning of big else block"); /* We're in parallel mode */ /* Since the data type of diff value is hsize_t which can - * be arbitary large such that there is no MPI type that + * be arbitrary large such that there is no MPI type that * matches it, the value is passed between processes as * an array of bytes in order to be portable. But this * may not work in non-homogeneous MPI environments. diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index d6b4611..bf488f5 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -3320,7 +3320,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_context_t * } break; case H5D_VIRTUAL: { - char dsetname[256]; /* virtual datset name */ + char dsetname[256]; /* virtual dataset name */ size_t n_vmaps; H5Pget_virtual_count(dcpl_id, &n_vmaps); diff --git a/tools/lib/h5tools_ref.c b/tools/lib/h5tools_ref.c index 4effc34..672b1db 100644 --- a/tools/lib/h5tools_ref.c +++ b/tools/lib/h5tools_ref.c @@ -69,7 +69,7 @@ free_ref_path_info(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSED *op /*------------------------------------------------------------------------- * Function: init_ref_path_cb * - * Purpose: Called by interator to create references for + * Purpose: Called by iterator to create references for * all objects and enter them in the table. * * Return: Error status. @@ -94,7 +94,7 @@ init_ref_path_cb(const char *obj_name, const H5O_info_t *oinfo, const char *alre /*------------------------------------------------------------------------- * Function: init_ref_path_table * - * Purpose: Initalize the reference path table + * Purpose: Initialize the reference path table * * Return: Non-negative on success, negative on failure * @@ -240,7 +240,7 @@ get_next_xid(void) /* * This counter is used to create fake object ID's - * The idea is to set it to the largest possible offest, which + * The idea is to set it to the largest possible offset, which * minimizes the chance of collision with a real object id. * */ @@ -311,7 +311,7 @@ lookup_ref_path(haddr_t ref) /*------------------------------------------------------------------------- * Function: fill_ref_path_table * - * Purpose: Called by interator to create references for + * Purpose: Called by iterator to create references for * all objects and enter them in the table. * * Return: Error status. diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 8b138e7..97c3534 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -345,7 +345,7 @@ get_option(int argc, const char *const *argv, const char *opts, const struct lon * * Last two characters in the string MUST be ")\0". * * * Generates a copy of the input string `start`, (src..")\0"), replacing - * separators and close-paren with null charaters. + * separators and close-paren with null characters. * * This string is allocated at runtime and should be freed when done. * * Generates array of char pointers, and directs start of each element * (each pointer) into this copy. @@ -392,7 +392,7 @@ parse_tuple(const char *start, int sep, char **cpy_out, unsigned *nelems, char * char * elem_ptr = NULL; char * dest_ptr = NULL; unsigned elems_count = 0; - char ** elems = NULL; /* more like *elems[], but complier... */ + char ** elems = NULL; /* more like *elems[], but compiler... */ char ** elems_re = NULL; /* temporary pointer, for realloc */ char * cpy = NULL; herr_t ret_value = SUCCEED; @@ -502,7 +502,7 @@ parse_tuple(const char *start, int sep, char **cpy_out, unsigned *nelems, char * /* Found terminal, non-escaped close-paren. Last element. * Write null terminator to copy. * Advance source pointer to gently break from loop. - * Requred to prevent ")" from always being added to last element. + * Required to prevent ")" from always being added to last element. */ start++; } diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index aec7e9b..ce21b3e 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -11,7 +11,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* changes: * rename pio_timer.c as io_timer.c; - * Removed pio_perf.h so that it is not dependant on it; + * Removed pio_perf.h so that it is not dependent on it; * Removed set_timer_type() and get_timer_type() since no one calls them; * Merged sio_timer.c into io_timer.c; */ diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index e0bd63e..fe6dc16 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -828,7 +828,7 @@ dump_group(hid_t gid, const char *name) if (!HDstrcmp(name, "/") && unamedtype) { unsigned u; /* Local index variable */ - /* dump unamed type in root group */ + /* dump unnamed type in root group */ for (u = 0; u < type_table->nobjs; u++) if (!type_table->objs[u].recorded) { dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); @@ -1934,7 +1934,7 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED *data, int pe, const char *real_name = display_name ? display_name : type; if ((type_id = H5Topen2(fid, type, H5P_DEFAULT)) < 0) { - /* check if type is unamed datatype */ + /* check if type is unnamed datatype */ unsigned idx = 0; while (idx < type_table->nobjs) { diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index 74bd224..1d65242 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -23,7 +23,7 @@ const char *xmlnsprefix = "hdf5:"; /* - * Alternative formating for data dumped to XML + * Alternative formatting for data dumped to XML * In general, the numbers are the same, but separators * except spaces are not used. * @@ -2782,7 +2782,7 @@ xml_dump_group(hid_t gid, const char *name) if (isRoot && unamedtype) { unsigned u; - /* Very special case: dump unamed type in root group */ + /* Very special case: dump unnamed type in root group */ for (u = 0; u < type_table->nobjs; u++) { if (!type_table->objs[u].recorded) { dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); @@ -2869,7 +2869,7 @@ xml_dump_group(hid_t gid, const char *name) if (isRoot && unamedtype) { unsigned u; - /* Very special case: dump unamed type in root group */ + /* Very special case: dump unnamed type in root group */ for (u = 0; u < type_table->nobjs; u++) { if (!type_table->objs[u].recorded) { dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT); @@ -2915,7 +2915,7 @@ xml_dump_group(hid_t gid, const char *name) /*------------------------------------------------------------------------- * Function: xml_print_refs * - * Purpose: Print a path to the objects referenced by HDF5 Referneces. + * Purpose: Print a path to the objects referenced by HDF5 References. * * Return: void * diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c index 509cc87..054195f 100644 --- a/tools/src/h5import/h5import.c +++ b/tools/src/h5import/h5import.c @@ -3745,7 +3745,7 @@ getCompressionParameter(struct Input *in, FILE *strm) int ival; const char *err1 = "Unable to get integer value.\n"; - const char *err2 = "Invalid value for compression paramter.\n"; + const char *err2 = "Invalid value for compression parameter.\n"; const char *err3 = "Unsupported Compression Type.\n"; switch (in->compressionType) { diff --git a/tools/src/h5perf/pio_engine.c b/tools/src/h5perf/pio_engine.c index 65194b0..fec8749 100644 --- a/tools/src/h5perf/pio_engine.c +++ b/tools/src/h5perf/pio_engine.c @@ -246,7 +246,7 @@ do_pio(parameters param) if (((size_t)(snbytes / pio_mpi_nprocs_g) % buf_size) != 0) { HDfprintf(stderr, "Dataset size/process (%" H5_PRINTF_LL_WIDTH "d) must be a multiple of the " - "trasfer buffer size (%zu)\n", + "transfer buffer size (%zu)\n", (long long)(snbytes / pio_mpi_nprocs_g), buf_size); GOTOERROR(FAIL); } @@ -255,7 +255,7 @@ do_pio(parameters param) if (((size_t)snbytes % buf_size) != 0) { HDfprintf(stderr, "Dataset side size (%" H5_PRINTF_LL_WIDTH "d) must be a multiple of the " - "trasfer buffer size (%zu)\n", + "transfer buffer size (%zu)\n", (long long)snbytes, buf_size); GOTOERROR(FAIL); } diff --git a/tools/src/h5perf/sio_engine.c b/tools/src/h5perf/sio_engine.c index 449e857..008023c 100644 --- a/tools/src/h5perf/sio_engine.c +++ b/tools/src/h5perf/sio_engine.c @@ -182,7 +182,7 @@ do_sio(parameters param, results *res) if ((param.dset_size[i] % param.buf_size[i]) != 0) { HDfprintf(stderr, "Dataset size[%d] (%" H5_PRINTF_LL_WIDTH "d) must be a multiple of the " - "trasfer buffer size[%d] (%zu)\n", + "transfer buffer size[%d] (%zu)\n", param.rank, (long long)param.dset_size[i], param.rank, param.buf_size[i]); GOTOERROR(FAIL); } diff --git a/tools/src/h5perf/sio_perf.c b/tools/src/h5perf/sio_perf.c index b2dd765..f299c04 100644 --- a/tools/src/h5perf/sio_perf.c +++ b/tools/src/h5perf/sio_perf.c @@ -1278,7 +1278,7 @@ usage(const char *prog) HDprintf("\n"); HDprintf(" Example: 2K,2K,3K\n"); HDprintf("\n"); - HDprintf(" The example defines an object (dataset, tranfer buffer) with three\n"); + HDprintf(" The example defines an object (dataset, transfer buffer) with three\n"); HDprintf(" dimensions. Be aware that as the number of dimensions increases, the\n"); HDprintf(" the total size of the object increases exponentially.\n"); HDprintf("\n"); diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c index c7c0758..0fb611d 100644 --- a/tools/src/h5repack/h5repack_copy.c +++ b/tools/src/h5repack/h5repack_copy.c @@ -67,7 +67,7 @@ copy_objects(const char *fnamein, const char *fnameout, pack_opt_t *options) hid_t fcpl = H5P_DEFAULT; /* file creation property list ID */ trav_table_t * travt = NULL; hsize_t ub_size = 0; /* size of user block */ - H5F_fspace_strategy_t set_strategy; /* Strategy to be set in outupt file */ + H5F_fspace_strategy_t set_strategy; /* Strategy to be set in output file */ hbool_t set_persist; /* Persist free-space status to be set in output file */ hsize_t set_threshold; /* Free-space section threshold to be set in output file */ hsize_t set_pagesize; /* File space page size to be set in output file */ @@ -188,7 +188,7 @@ copy_objects(const char *fnamein, const char *fnameout, pack_opt_t *options) H5TOOLS_GOTO_ERROR((-1), "H5Pset_shared_mesg_nindexes failed to set the number of shared " "object header message indexes"); - /* msg_size[0]=dataspace, 1=datatype, 2=file value, 3=filter pipleline, 4=attribute */ + /* msg_size[0]=dataspace, 1=datatype, 2=file value, 3=filter pipeline, 4=attribute */ for (i = 0; i < (nindex - 1); i++) if (H5Pset_shared_mesg_index(fcpl, i, mesg_type_flags[i], min_mesg_sizes[i]) < 0) H5TOOLS_GOTO_ERROR((-1), "H5Pset_shared_mesg_index failed to configure the specified " diff --git a/tools/test/h5copy/CMakeTests.cmake b/tools/test/h5copy/CMakeTests.cmake index e9b36fe..154ca15 100644 --- a/tools/test/h5copy/CMakeTests.cmake +++ b/tools/test/h5copy/CMakeTests.cmake @@ -211,7 +211,7 @@ endmacro () # - # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target + # Similar to ADD_H5_TEST macro. Compare to outputs from source & target # files instead of checking with h5ls. # macro (ADD_H5_CMP_TEST testname resultcode infile vparam sparam srcname dparam dstname) diff --git a/tools/test/h5copy/h5copygentest.c b/tools/test/h5copy/h5copygentest.c index bc66bcf..c686fdb 100644 --- a/tools/test/h5copy/h5copygentest.c +++ b/tools/test/h5copy/h5copygentest.c @@ -618,7 +618,7 @@ gen_region_ref(hid_t loc_id) goto out; } - /* create normal dataset which is refered */ + /* create normal dataset which is referred */ oid2 = H5Dcreate2(loc_id, REG_REF_DS2, H5T_STD_I8LE, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (oid2 < 0) { HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); diff --git a/tools/test/h5copy/testh5copy.sh.in b/tools/test/h5copy/testh5copy.sh.in index 79b6fd5..6349ef4 100644 --- a/tools/test/h5copy/testh5copy.sh.in +++ b/tools/test/h5copy/testh5copy.sh.in @@ -88,7 +88,7 @@ test -d $TESTDIR || mkdir $TESTDIR # RUNSERIAL is used. Check if it can return exit code from executalbe correctly. if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." + echo "***Warning*** Serial Exit Code is not passed back to shell correctly." echo "***Warning*** Exit code checking is skipped." h5haveexitcode=no fi diff --git a/tools/test/h5diff/CMakeTests.cmake b/tools/test/h5diff/CMakeTests.cmake index 4561306..ce82968 100644 --- a/tools/test/h5diff/CMakeTests.cmake +++ b/tools/test/h5diff/CMakeTests.cmake @@ -1264,7 +1264,7 @@ ADD_H5_TEST (h5diff_208 0 -c ${FILE19} ${FILE20}) ADD_H5_TEST (h5diff_220 1 -c non_comparables1.h5 non_comparables2.h5 /g1) # comparable dataset with non-comparable attribute and other comparable attributes. -# Also test non-compatible attributes with different type, dimention, rank. +# Also test non-compatible attributes with different type, dimension, rank. # All the rest comparables should display differences. ADD_H5_TEST (h5diff_221 1 -c non_comparables1.h5 non_comparables2.h5 /g2) @@ -1424,7 +1424,7 @@ ADD_H5_TEST (h5diff_475 1 -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_ # ############################################################################## -# # test for group diff recursivly +# # test for group diff recursively # ############################################################################## # root ADD_H5_TEST (h5diff_500 1 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /) diff --git a/tools/test/h5diff/h5diff_plugin.sh.in b/tools/test/h5diff/h5diff_plugin.sh.in index 0ab169a..28f723e 100644 --- a/tools/test/h5diff/h5diff_plugin.sh.in +++ b/tools/test/h5diff/h5diff_plugin.sh.in @@ -158,7 +158,7 @@ done # RUNSERIAL is used. Check if it can return exit code from executalbe correctly. if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." + echo "***Warning*** Serial Exit Code is not passed back to shell correctly." echo "***Warning*** Exit code checking is skipped." h5haveexitcode=no fi @@ -236,7 +236,7 @@ TOOLTEST() { # don't add exit code check in pmode, as it causes failure. (exit code # is from mpirun not tool) # if any problem occurs relate to an exit code, it will be caught in - # serial mode, so the test is fullfilled. + # serial mode, so the test is fulfilled. if test $h5haveexitcode = 'yes' -a -z "$pmode"; then echo "EXIT CODE: $EXIT_CODE" >> $actual fi @@ -327,7 +327,7 @@ TOOLTEST_ERR() { # don't add exit code check in pmode, as it causes failure. (exit code # is from mpirun not tool) # if any problem occurs relate to an exit code, it will be caught in - # serial mode, so the test is fullfilled. + # serial mode, so the test is fulfilled. if test $h5haveexitcode = 'yes' -a -z "$pmode"; then echo "EXIT CODE: $EXIT_CODE" >> $actual fi diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c index bed36a4..3fda024 100644 --- a/tools/test/h5diff/h5diffgentest.c +++ b/tools/test/h5diff/h5diffgentest.c @@ -82,7 +82,7 @@ size_t H5TOOLS_MALLOCSIZE = (128 * 1024 * 1024); #define EXCLUDE_FILE3_2 "h5diff_exclude3-2.h5" /* compound type with multiple vlen string types */ #define COMP_VL_STRS_FILE "h5diff_comp_vl_strs.h5" -/* attribute compre with verbose level */ +/* attribute compare with verbose level */ #define ATTR_VERBOSE_LEVEL_FILE1 "h5diff_attr_v_level1.h5" #define ATTR_VERBOSE_LEVEL_FILE2 "h5diff_attr_v_level2.h5" /* file containing valid/invalid enum value mix */ @@ -2906,7 +2906,7 @@ test_group_recurse2(void) * FILE 2-3 *------------------------------------------------------------------------*/ - /* crate target file */ + /* create target file */ fileid4 = H5Fcreate(GRP_RECURSE2_EXT3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*----------------------------------------------- @@ -2940,7 +2940,7 @@ test_group_recurse2(void) * FILE 2-2 *------------------------------------------------------------------------*/ - /* crate target file */ + /* create target file */ fileid3 = H5Fcreate(GRP_RECURSE2_EXT2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*----------------------------------------------- @@ -2992,7 +2992,7 @@ test_group_recurse2(void) * FILE 2-1 *------------------------------------------------------------------------*/ - /* crate target file */ + /* create target file */ fileid2 = H5Fcreate(GRP_RECURSE2_EXT1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*----------------------------------------------- @@ -4858,7 +4858,7 @@ test_data_nocomparables(const char *fname, int make_diffs) /* attr1 - non-compatible : different type */ write_attr(did2, 1, dims1_1, "attr1", tid_attr1, attr_data_ptr2); - /* attr2 - non-compatible : same rank, different dimention */ + /* attr2 - non-compatible : same rank, different dimension */ write_attr(did2, 1, (hsize_t *)attr2_dim_ptr, "attr2", H5T_NATIVE_INT, data3); /* attr3 - non-compatible : different rank */ @@ -7907,7 +7907,7 @@ gen_datareg(hid_t fid, int make_diffs /* flag to modify data buffers */) * Function: test_hyperslab * * Purpose: test diff by hyperslabs. create a dataset with 1GB dimensions - * by iterating trough 1KB hyperslabs + * by iterating through 1KB hyperslabs * *------------------------------------------------------------------------- */ diff --git a/tools/test/h5diff/testh5diff.sh.in b/tools/test/h5diff/testh5diff.sh.in index d34896c..f80a939 100644 --- a/tools/test/h5diff/testh5diff.sh.in +++ b/tools/test/h5diff/testh5diff.sh.in @@ -441,7 +441,7 @@ done # RUNSERIAL is used. Check if it can return exit code from executalbe correctly. if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." + echo "***Warning*** Serial Exit Code is not passed back to shell correctly." echo "***Warning*** Exit code checking is skipped." h5haveexitcode=no fi @@ -504,7 +504,7 @@ TOOLTEST() { # don't add exit code check in pmode, as it causes failure. (exit code # is from mpirun not tool) # if any problem occurs relate to an exit code, it will be caught in - # serial mode, so the test is fullfilled. + # serial mode, so the test is fulfilled. if test $h5haveexitcode = 'yes' -a -z "$pmode"; then echo "EXIT CODE: $EXIT_CODE" >> $actual fi @@ -910,7 +910,7 @@ TOOLTEST h5diff_207.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset8 g2/dset9 TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5 # non-comparable dataset with comparable attribute, and other comparable datasets. -# Also test non-compatible attributes with different type, dimention, rank. +# Also test non-compatible attributes with different type, dimension, rank. # All the comparables should display differences. TOOLTEST h5diff_220.txt -c non_comparables1.h5 non_comparables2.h5 /g1 @@ -1073,7 +1073,7 @@ TOOLTEST h5diff_474.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_li TOOLTEST h5diff_475.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link1 # ############################################################################## -# # test for group diff recursivly +# # test for group diff recursively # ############################################################################## # root TOOLTEST h5diff_500.txt -v h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 / / diff --git a/tools/test/h5dump/CMakeTests.cmake b/tools/test/h5dump/CMakeTests.cmake index 32fa7ef..47ec1e4 100644 --- a/tools/test/h5dump/CMakeTests.cmake +++ b/tools/test/h5dump/CMakeTests.cmake @@ -836,7 +836,7 @@ # test for named data types ADD_H5_TEST (tcomp-2 0 --enable-error-stack -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5) ADD_H5_TEST_N (tcomp-2 0 --enable-error-stack -N /type1 --any_path /type2 --any_path=/group1/type3 tcompound.h5) - # test for unamed type + # test for unnamed type ADD_H5ERR_MASK_TEST (tcomp-3 0 "object '#6632' doesn't exist" "--enable-error-stack;-t;/#6632;-g;/group2;tcompound.h5") # test complicated compound datatype ADD_H5_TEST (tcomp-4 0 --enable-error-stack tcompound_complex.h5) diff --git a/tools/test/h5dump/CMakeTestsPBITS.cmake b/tools/test/h5dump/CMakeTestsPBITS.cmake index 06be332..0c3297f 100644 --- a/tools/test/h5dump/CMakeTestsPBITS.cmake +++ b/tools/test/h5dump/CMakeTestsPBITS.cmake @@ -158,7 +158,7 @@ # Limits: # Maximum number of packed bits is 8 (for now). # Maximum integer size is 8*sizeof(long long). - # Maximun Offset is Maximum size - 1. + # Maximum Offset is Maximum size - 1. # Maximum Offset+Length is Maximum size. # Tests: # Normal operation on both signed and unsigned int datasets. diff --git a/tools/test/h5dump/h5dumpgentest.c b/tools/test/h5dump/h5dumpgentest.c index 689ce37..63fc50a 100644 --- a/tools/test/h5dump/h5dumpgentest.c +++ b/tools/test/h5dump/h5dumpgentest.c @@ -235,7 +235,7 @@ typedef struct s1_t { #define ARRAY3_DIM2 3 /* VL string datatype name */ -/* TODO remove complier error not used, remove the link when everything is OK */ +/* TODO remove compiler error not used, remove the link when everything is OK */ /* #define VLSTR_TYPE "vl_string_type" */ /* "File 41" macros */ @@ -1127,7 +1127,7 @@ gent_compound_dt(void) H5Dclose(dataset); H5Gclose(group); - /* unamed data type */ + /* unnamed data type */ group = H5Gcreate2(fid, "/group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); type = H5Tcreate(H5T_COMPOUND, sizeof(dset5_t)); @@ -1311,7 +1311,7 @@ gent_compound_dt2(void) H5Dclose(dataset); H5Gclose(group); - /* unamed data type */ + /* unnamed data type */ group = H5Gcreate2(fid, "/group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); type = H5Tcreate(H5T_COMPOUND, sizeof(dset5_t)); @@ -1521,11 +1521,11 @@ gent_loop2(void) fid = H5Fcreate(FILE11, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - /* create group object g1 and implcit path from root object */ + /* create group object g1 and implicit path from root object */ group = H5Gcreate2(fid, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); H5Gclose(group); - /* create group object g2 and implcit path from root object */ + /* create group object g2 and implicit path from root object */ group = H5Gcreate2(fid, "/g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); H5Gclose(group); @@ -2462,7 +2462,7 @@ gent_attrreg(void) static void gent_nestcomp(void) { - /* Compound memeber of the compound datatype*/ + /* Compound member of the compound datatype*/ typedef struct cmp_t { char a; float b[2]; @@ -2535,7 +2535,7 @@ gent_nestcomp(void) H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE); H5Tinsert(s2_tid, "b_name", HOFFSET(s2_t, b), H5T_NATIVE_FLOAT); - /* Insert compound memeber created above */ + /* Insert compound member created above */ H5Tinsert(s2_tid, "d_name", HOFFSET(s2_t, d), cmp_tid); /* @@ -5194,7 +5194,7 @@ gent_named_dtype_attr(void) sid = H5Screate(H5S_SCALAR); HDassert(sid > 0); - /* Create attribute on commited datatype */ + /* Create attribute on committed datatype */ aid = H5Acreate2(tid, F42_ATTRNAME, H5T_STD_I32LE, sid, H5P_DEFAULT, H5P_DEFAULT); HDassert(aid > 0); @@ -6766,7 +6766,7 @@ gent_attr_creation_order(void) goto out; /*------------------------------------------------------------------------- - * create a dataset with creation order tracked for attributes and atributes in it + * create a dataset with creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ @@ -6790,7 +6790,7 @@ gent_attr_creation_order(void) did = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * create a dataset without creation order tracked for attributes and atributes in it + * create a dataset without creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ @@ -6814,7 +6814,7 @@ gent_attr_creation_order(void) did = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * create a group with creation order tracked for attributes and atributes in it + * create a group with creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ @@ -6837,7 +6837,7 @@ gent_attr_creation_order(void) gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * create a group without creation order tracked for attributes and atributes in it + * create a group without creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ @@ -6860,7 +6860,7 @@ gent_attr_creation_order(void) gid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * create a named datatype with creation order tracked for attributes and atributes in it + * create a named datatype with creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ @@ -6886,7 +6886,7 @@ gent_attr_creation_order(void) tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * create a named datatype without creation order tracked for attributes and atributes in it + * create a named datatype without creation order tracked for attributes and attributes in it *------------------------------------------------------------------------- */ diff --git a/tools/test/h5dump/testh5dump.sh.in b/tools/test/h5dump/testh5dump.sh.in index 82b379c..320ab16 100644 --- a/tools/test/h5dump/testh5dump.sh.in +++ b/tools/test/h5dump/testh5dump.sh.in @@ -1164,7 +1164,7 @@ TOOLTEST tcomp-1.ddl --enable-error-stack tcompound.h5 # test for named data types TOOLTEST tcomp-2.ddl --enable-error-stack -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5 TOOLTEST tcomp-2.ddl --enable-error-stack -N /type1 --any_path /type2 --any_path=/group1/type3 tcompound.h5 -# test for unamed type +# test for unnamed type TOOLTEST4 tcomp-3.ddl --enable-error-stack -t /#6632 -g /group2 tcompound.h5 # test complicated compound datatype TOOLTEST tcomp-4.ddl --enable-error-stack tcompound_complex.h5 diff --git a/tools/test/h5dump/testh5dumppbits.sh.in b/tools/test/h5dump/testh5dumppbits.sh.in index 6689749..eaf91fd 100644 --- a/tools/test/h5dump/testh5dumppbits.sh.in +++ b/tools/test/h5dump/testh5dumppbits.sh.in @@ -516,7 +516,7 @@ TOOLTEST tnofilename-with-packed-bits.ddl --enable-error-stack # Limits: # Maximum number of packed bits is 8 (for now). # Maximum integer size is 64 (for now). -# Maximun Offset is 63 (Maximum size - 1). +# Maximum Offset is 63 (Maximum size - 1). # Maximum Offset+Length is 64 (Maximum size). # Tests: # Normal operation on both signed and unsigned int datasets. diff --git a/tools/test/h5format_convert/h5fc_gentest.c b/tools/test/h5format_convert/h5fc_gentest.c index 09cca45..ccb64b5 100644 --- a/tools/test/h5format_convert/h5fc_gentest.c +++ b/tools/test/h5format_convert/h5fc_gentest.c @@ -381,7 +381,7 @@ error: /* * Function: gen_err_level() * - * Generate a file to test the situtation described in HDFFV-9434: + * Generate a file to test the situation described in HDFFV-9434: * Exceed the limit of v1-btree level * * Create a file with H5Pset_istore_k(fcpl, 1). diff --git a/tools/test/h5format_convert/testh5fc.sh.in b/tools/test/h5format_convert/testh5fc.sh.in index 762f43d..df083d1 100644 --- a/tools/test/h5format_convert/testh5fc.sh.in +++ b/tools/test/h5format_convert/testh5fc.sh.in @@ -313,7 +313,7 @@ TOOLTEST_MASK_OUT() { $RM $actual $actual_err $actual_sav $actual_err_sav fi } -# Same as TOOLTEST_OUT except only compares error outout +# Same as TOOLTEST_OUT except only compares error output TOOLTEST_ERR() { # Prepare expected and actual output expect="$TESTDIR/$1" diff --git a/tools/test/h5jam/testh5jam.sh.in b/tools/test/h5jam/testh5jam.sh.in index caa3416..191fef0 100644 --- a/tools/test/h5jam/testh5jam.sh.in +++ b/tools/test/h5jam/testh5jam.sh.in @@ -345,7 +345,7 @@ CHECK_NOUB() { # JAMTEST user_block file.h5 [--clobber] [ofile.h5] # # Test the 'jam' tool: -# 1. figure out the input and output, and the comparision +# 1. figure out the input and output, and the comparison # that will be done. # 2. call 'jam' with the appropriate arguments # 3. check the user block is correct in the output (Check_UB) diff --git a/tools/test/h5ls/h5ls_plugin.sh.in b/tools/test/h5ls/h5ls_plugin.sh.in index 29e982d..0077b07 100644 --- a/tools/test/h5ls/h5ls_plugin.sh.in +++ b/tools/test/h5ls/h5ls_plugin.sh.in @@ -166,7 +166,7 @@ VERIFY() { # the `nerrors' global variable and (if $verbose is set) display up to $NLINS # lines of the actual output from the tool test. The actual output is not # removed if $HDF5_NOCLEANUP has a non-zero value. -# Arguemnts: +# Arguments: # $1 -- actual output filename to use # $2 and on -- argument for the h5ls tool TOOLTEST() { diff --git a/tools/test/h5ls/testh5ls.sh.in b/tools/test/h5ls/testh5ls.sh.in index ee0dad7..36583da 100644 --- a/tools/test/h5ls/testh5ls.sh.in +++ b/tools/test/h5ls/testh5ls.sh.in @@ -164,7 +164,7 @@ $SRC_H5LS_TESTFILES/tdset_idx.ls # RUNSERIAL is used. Check if it can return exit code from executalbe correctly. if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." + echo "***Warning*** Serial Exit Code is not passed back to shell correctly." echo "***Warning*** Exit code checking is skipped." h5haveexitcode=no fi @@ -230,7 +230,7 @@ TESTING() { # the `nerrors' global variable and (if $verbose is set) display up to $NLINS # lines of the actual output from the tool test. The actual output is not # removed if $HDF5_NOCLEANUP has a non-zero value. -# Arguemnts: +# Arguments: # $1 -- actual output filename to use # $2 and on -- argument for the h5ls tool TOOLTEST() { diff --git a/tools/test/h5ls/testh5lsvds.sh.in b/tools/test/h5ls/testh5lsvds.sh.in index 4814f85..ab2d137 100644 --- a/tools/test/h5ls/testh5lsvds.sh.in +++ b/tools/test/h5ls/testh5lsvds.sh.in @@ -103,7 +103,7 @@ $SRC_H5LS_TESTFILES/vds/tvds-5.ls # RUNSERIAL is used. Check if it can return exit code from executalbe correctly. if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." + echo "***Warning*** Serial Exit Code is not passed back to shell correctly." echo "***Warning*** Exit code checking is skipped." h5haveexitcode=no fi @@ -169,7 +169,7 @@ TESTING() { # the `nerrors' global variable and (if $verbose is set) display up to $NLINS # lines of the actual output from the tool test. The actual output is not # removed if $HDF5_NOCLEANUP has a non-zero value. -# Arguemnts: +# Arguments: # $1 -- actual output filename to use # $2 and on -- argument for the h5ls tool TOOLTEST() { diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake index 1d0a9e9..d44c856 100644 --- a/tools/test/h5repack/CMakeTests.cmake +++ b/tools/test/h5repack/CMakeTests.cmake @@ -1535,7 +1535,7 @@ ADD_H5_TEST (bug1814 "TEST" ${FILE_REF}) # test attribute with various references (bug1797 / HDFFV-5932) -# the references in attribute of compund or vlen datatype +# the references in attribute of compound or vlen datatype ADD_H5_TEST (HDFFV-5932 "TEST" ${FILE_ATTR_REF}) # Add test for memory leak in attribute. This test is verified by CTEST. diff --git a/tools/test/h5repack/dynlib_rpk.c b/tools/test/h5repack/dynlib_rpk.c index b228344..bef032a 100644 --- a/tools/test/h5repack/dynlib_rpk.c +++ b/tools/test/h5repack/dynlib_rpk.c @@ -83,7 +83,7 @@ H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_ add_on = (int)cd_values[0]; if (flags & H5Z_FLAG_REVERSE) { /*read*/ - /* Substract the "add on" value to all the data values */ + /* Subtract the "add on" value to all the data values */ while (buf_left > 0) { *int_ptr++ -= add_on; buf_left -= sizeof(int); diff --git a/tools/test/h5repack/dynlib_vrpk.c b/tools/test/h5repack/dynlib_vrpk.c index 5eac4f2..a45de65 100644 --- a/tools/test/h5repack/dynlib_vrpk.c +++ b/tools/test/h5repack/dynlib_vrpk.c @@ -91,7 +91,7 @@ H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_ add_on = (int)cd_values[0]; if (flags & H5Z_FLAG_REVERSE) { /*read*/ - /* Substract the "add on" value to all the data values */ + /* Subtract the "add on" value to all the data values */ while (buf_left > 0) { *int_ptr++ -= add_on; buf_left -= sizeof(int); diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in index 18be371..544bd64 100644 --- a/tools/test/h5repack/h5repack.sh.in +++ b/tools/test/h5repack/h5repack.sh.in @@ -519,7 +519,7 @@ VERIFY_LAYOUT_ALL() #--------------------------------- # check the layout from a dataset - # check if the other layouts still exsit + # check if the other layouts still exist VERIFY "layouts" ( cd $TESTDIR @@ -1707,10 +1707,10 @@ TOOLTEST1 family tfamily%05d.h5 TOOLTEST bug1814 h5repack_refs.h5 # test attribute with various references (bug1797 / HDFFV-5932) -# the references in attribute of compund or vlen datatype +# the references in attribute of compound or vlen datatype TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 -# Add test for memory leak in attirbute. This test is verified by CTEST. +# Add test for memory leak in attribute. This test is verified by CTEST. # 1. leak from vlen string # 2. leak from compound type without reference member # (HDFFV-7840, ) diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c index 576b1c7..b026cc0 100644 --- a/tools/test/h5repack/h5repackgentest.c +++ b/tools/test/h5repack/h5repackgentest.c @@ -27,9 +27,9 @@ * There is no restriction on the name, number, or structure of datasets and * groups in HDF5 file. * - * The inluded datatypes should be more than adequate to verify the correctness + * The included datatypes should be more than adequate to verify the correctness * of the behavior -- if one type can be consolidated from external storage, - * then thay all can. + * then they all can. */ #include "hdf5.h" diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c index 34d0b53..97db3ac 100644 --- a/tools/test/h5repack/h5repacktst.c +++ b/tools/test/h5repack/h5repacktst.c @@ -624,7 +624,7 @@ main(void) SKIPPED(); #endif - TESTING(" addding shuffle filter"); + TESTING(" adding shuffle filter"); /*------------------------------------------------------------------------- * test an individual object option @@ -653,7 +653,7 @@ main(void) *------------------------------------------------------------------------- */ - TESTING(" addding shuffle filter to all"); + TESTING(" adding shuffle filter to all"); if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -1592,17 +1592,17 @@ main(void) #endif /*------------------------------------------------------------------------- - * test file with aligment + * test file with alignment *------------------------------------------------------------------------- */ - TESTING(" file with aligment"); + TESTING(" file with alignment"); #ifdef H5_HAVE_FILTER_DEFLATE if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - /* add the options for aligment */ + /* add the options for alignment */ pack_options.alignment = 1; pack_options.threshold = 1; @@ -1613,7 +1613,7 @@ main(void) if (h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) GOERROR; - /* verify aligment */ + /* verify alignment */ { hsize_t threshold; hsize_t alignment; @@ -6244,7 +6244,7 @@ gen_refered_objs(hid_t loc_id) goto out; } - /* create normal dataset which is refered */ + /* create normal dataset which is referred */ did2 = H5Dcreate2(loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (did2 < 0) { HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); @@ -6284,7 +6284,7 @@ out: * Generate object references to objects (dataset,group and named datatype) * * Note: - * copied from h5copygentest.c and upate to create named datatype + * copied from h5copygentest.c and update to create named datatype * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------*/ diff --git a/tools/test/h5repack/testfiles/README b/tools/test/h5repack/testfiles/README index 4096dee..4cb66f4 100644 --- a/tools/test/h5repack/testfiles/README +++ b/tools/test/h5repack/testfiles/README @@ -1,5 +1,5 @@ h5repack_nested_8bit_enum_deflated.h5: h5repack_nested_8bit_enum.h5: - enuberated 8bit type nested in compount type. Original file provided + enuberated 8bit type nested in compound type. Original file provided by a user (HDFFV-8667) as a test file. Used h5copy to extract only the Compound type dataset. The non-deflated version is produced by h5repack. diff --git a/tools/test/h5stat/testh5stat.sh.in b/tools/test/h5stat/testh5stat.sh.in index 647f06a..1b4e504 100644 --- a/tools/test/h5stat/testh5stat.sh.in +++ b/tools/test/h5stat/testh5stat.sh.in @@ -13,7 +13,7 @@ # # Tests for the h5stat tool # -# Modifcations: +# Modifications: # Vailin Choi; July 2013 # Add tests for -l, -m, -a options # diff --git a/tools/test/misc/h5clear_gentest.c b/tools/test/misc/h5clear_gentest.c index 53fbc42..37cfc7f 100644 --- a/tools/test/misc/h5clear_gentest.c +++ b/tools/test/misc/h5clear_gentest.c @@ -16,7 +16,7 @@ /* The HDF5 test files */ const char *FILENAME[] = { "h5clear_sec2_v3.h5", /* 0 -- sec2 file with superblock version 3 */ - "h5clear_log_v3.h5", /* 1 -- log file with superblock veresion 3 */ + "h5clear_log_v3.h5", /* 1 -- log file with superblock version 3 */ "h5clear_sec2_v0.h5", /* 2 -- sec2 file with superblock version 0 */ "h5clear_sec2_v2.h5" /* 3 -- sec2 file with superblock version 2 */ }; diff --git a/tools/test/misc/h5perf_gentest.c b/tools/test/misc/h5perf_gentest.c index 332e49c..248fd92 100644 --- a/tools/test/misc/h5perf_gentest.c +++ b/tools/test/misc/h5perf_gentest.c @@ -255,9 +255,9 @@ create_perf_test_file(const char *fname, int ngrps, int ndsets, int nattrs, hsiz buf_vlen_s = (char **)calloc(dim0, sizeof(char *)); buf_str = malloc(dim0 * sizeof(*buf_str)); - /* allocate array of doulbe pointers */ + /* allocate array of double pointers */ buf_double2d = (double **)calloc(dims2d[0], sizeof(double *)); - /* allocate a contigous chunk of memory for the data */ + /* allocate a contiguous chunk of memory for the data */ buf_double2d[0] = (double *)calloc(dims2d[0] * dims2d[1], sizeof(double)); /* assign memory city to pointer array */ for (i = 1; i < dims2d[0]; i++) @@ -396,7 +396,7 @@ create_perf_test_file(const char *fname, int ngrps, int ndsets, int nattrs, hsiz H5Dclose(did); /* 6 add compound data */ - HDsprintf(name, "%05d compund data", j); + HDsprintf(name, "%05d compound data", j); did = H5Dcreate(gid1, name, cmp_tid, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); H5Dwrite(did, cmp_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_comp); if (!j) diff --git a/tools/test/perform/direct_write_perf.c b/tools/test/perform/direct_write_perf.c index b3ae54d..5eddd46 100644 --- a/tools/test/perform/direct_write_perf.c +++ b/tools/test/perform/direct_write_perf.c @@ -630,7 +630,7 @@ test_unix_write(void) TEST_ERROR; } else if (op_size == 0) { - printf(" unable to write sufficent data to file because %s \n", strerror(errno)); + printf(" unable to write sufficient data to file because %s \n", strerror(errno)); TEST_ERROR; } } diff --git a/tools/test/perform/zip_perf.c b/tools/test/perform/zip_perf.c index 4c7da15..040e774 100644 --- a/tools/test/perform/zip_perf.c +++ b/tools/test/perform/zip_perf.c @@ -267,7 +267,7 @@ usage(void) HDfprintf(stdout, " data you want [default: 0]"); HDfprintf(stdout, " -s S, --file-size=S Maximum size of uncompressed file [default: 64M]\n"); HDfprintf(stdout, " -B S, --max-buffer_size=S Maximum size of buffer [default: 1M]\n"); - HDfprintf(stdout, " -b S, --min-buffer_size=S Minumum size of buffer [default: 128K]\n"); + HDfprintf(stdout, " -b S, --min-buffer_size=S Minimum size of buffer [default: 128K]\n"); HDfprintf(stdout, " -p D, --prefix=D The directory prefix to place the file\n"); HDfprintf(stdout, " -r, --random-test Use random data to write to the file\n"); HDfprintf(stdout, " [default: no]\n"); |