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authorLarry Knox <lrknox@hdfgroup.org>2021-11-04 21:27:21 (GMT)
committerGitHub <noreply@github.com>2021-11-04 21:27:21 (GMT)
commit75a320b89e5e0abeb5ea665ad73b188f049df494 (patch)
treeab989bd54ec3085f2d4b1151a86eecb6419c021a
parentd71d267392f385bd583c033870fba5ffbd5f1c3c (diff)
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Add contents of RELEASE.txt for HDF5 1.10.8 release to HISTORY-1_10.txt. (#1163)
-rw-r--r--release_docs/HISTORY-1_10.txt946
1 files changed, 946 insertions, 0 deletions
diff --git a/release_docs/HISTORY-1_10.txt b/release_docs/HISTORY-1_10.txt
index 127b821..d95b372 100644
--- a/release_docs/HISTORY-1_10.txt
+++ b/release_docs/HISTORY-1_10.txt
@@ -3,6 +3,7 @@ HDF5 History
This file contains development history of the HDF5 1.10 branch
+10. Release Information for hdf5-1.10.8
09. Release Information for hdf5-1.10.7
08. Release Information for hdf5-1.10.6
07. Release Information for hdf5-1.10.5
@@ -15,6 +16,951 @@ This file contains development history of the HDF5 1.10 branch
[Search on the string '%%%%' for section breaks of each release.]
+%%%%1.10.8%%%%
+
+HDF5 version 1.10.8 released on 2021-10-22
+================================================================================
+
+
+INTRODUCTION
+============
+
+ This document describes the differences between this release and the previous
+ HDF5 release. It contains information on the platforms tested and known
+ problems in this release. For more details check the HISTORY*.txt files in
+ the HDF5 source.
+
+ Note that documentation in the links below will be updated at the time of
+ each final release.
+
+ Links to HDF5 documentation can be found on The HDF5 web page:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5
+
+ The official HDF5 releases can be obtained from:
+
+ https://www.hdfgroup.org/downloads/hdf5/
+
+ Changes from Release to Release and New Features in the HDF5-1.10.x release
+ series can be found at:
+
+ https://portal.hdfgroup.org/display/HDF5/HDF5+Application+Developer%27s+Guide
+
+ If you have any questions or comments, please send them to the HDF Help Desk:
+
+ help@hdfgroup.org
+
+
+CONTENTS
+========
+
+ - New Features
+ - New platforms, languages and compilers tested
+ - Bug Fixes since HDF5-1.10.7
+ - Platforms Tested
+ - Configuration Options Tested
+ - Known Problems
+ - CMake vs. Autotools installations
+
+
+New Features
+============
+
+ Configuration:
+ -------------
+ - Added new option to control the build of High-Level tools
+ with default ON/enabled.
+
+ Add configure options (autotools - CMake):
+ --enable-hltools HDF5_BUILD_HL_TOOLS
+
+ Disabling this option prevents building the gif tool which
+ contains the following CVEs:
+ HDFFV-10592 CVE-2018-17433
+ HDFFV-10593 CVE-2018-17436
+ HDFFV-11048 CVE-2020-10809
+
+ (ADB - 2021/09/16, HDFFV-11266)
+
+ - Adds C++ Autotools configuration file for Intel
+
+ * Checks for icpc as the compiler
+ * Copies most non-warning flags from intel-flags
+
+ (DER - 2021/06/02)
+
+ - Adds C++ Autotools configuration file for PGI
+
+ * Checks for pgc++ as the compiler name (was: pgCC)
+ * Other options basically match new C options (below)
+
+ (DER - 2021/06/02)
+
+ - Updates PGI C options
+
+ * -Minform set to warn (was: inform) to suppress spurious messages
+ * Sets -gopt -O2 as debug options
+ * Sets -O4 as 'high optimization' option
+ * Sets -O0 as 'no optimization' option
+ * Removes specific settings for PGI 9 and 10
+
+ (DER - 2021/06/02)
+
+ - CMake will now run the shell script tests in test/ by default
+
+ The test directory includes several shell script tests that previously
+ were not run by CMake. These are now run by default. TEST_SHELL_SCRIPTS
+ has been set to ON and SH_PROGRAM has been set to bash (some test
+ scripts use bash-isms). Platforms without bash (e.g., Windows) will
+ ignore the script tests.
+
+ (DER - 2021/05/23)
+
+ - Removed unused HDF5_ENABLE_HSIZET option from CMake
+
+ This has been unused for some time and has no effect.
+
+ (DER - 2021/05/23)
+
+ - CMake no longer builds the C++ library by default
+
+ HDF5_BUILD_CPP_LIB now defaults to OFF, which is in line with the
+ Autotools build defaults.
+
+ (DER - 2021/04/20)
+
+ - Removal of pre-VS2015 work-arounds
+
+ HDF5 now requires Visual Studio 2015 or greater, so old work-around
+ code and definitions have been removed, including:
+
+ * <inttypes.h>
+ * snprintf and vsnprintf
+ * llround, llroundf, lround, lroundf, round, roundf
+ * strtoll and strtoull
+ * va_copy
+ * struct timespec
+
+ (DER - 2021/03/22)
+
+ - Add CMake variable HDF5_LIB_INFIX
+
+ This infix is added to all library names after 'hdf5'.
+ e.g. the infix '_openmpi' results in the library name 'libhdf5_openmpi.so'
+ This name is used in packages on debian based systems.
+ (see https://packages.debian.org/jessie/amd64/libhdf5-openmpi-8/filelist)
+
+ (barcode - 2021/03/22)
+
+ - On macOS, Universal Binaries can now be built, allowing native execution on
+ both Intel and Apple Silicon (ARM) based Macs.
+
+ To do so, set CMAKE_OSX_ARCHITECTURES="x86_64;arm64"
+
+ (SAM - 2021/02/07, github-311)
+
+ - Added a configure-time option to control certain compiler warnings
+ diagnostics
+
+ A new configure-time option was added that allows some compiler warnings
+ diagnostics to have the default operation. This is mainly intended for
+ library developers and currently only works for gcc 10 and above. The
+ diagnostics flags apply to C, C++ and Fortran compilers and will appear
+ in "H5 C Flags", H5 C++ Flags" and H5 Fortran Flags, respectively. They
+ will NOT be exported to h5cc, etc.
+
+ The default is OFF, which will disable the warnings URL and color attributes
+ for the warnings output. ON will not add the flags and allow default behavior.
+
+ Autotools: --enable-diags
+
+ CMake: HDF5_ENABLE_BUILD_DIAGS
+
+ (ADB - 2021/02/05, HDFFV-11213)
+
+ - CMake option to build the HDF filter plugins project as an external project
+
+ The HDF filter plugins project is a collection of registered compression
+ filters that can be dynamically loaded when needed to access data stored
+ in a hdf5 file. This CMake-only option allows the plugins to be built and
+ distributed with the hdf5 library and tools. Like the options for szip and
+ zlib, either a tgz file or a git repository can be specified for the source.
+
+ The option was refactored to use the CMake FetchContent process. This allows
+ more control over the filter targets, but required external project command
+ options to be moved to a CMake include file, HDF5PluginCache.cmake. Also
+ enabled the filter examples to be used as tests for operation of the
+ filter plugins.
+
+ (ADB - 2020/12/10, OESS-98)
+
+ - FreeBSD Autotools configuration now defaults to 'cc' and 'c++' compilers
+
+ On FreeBSD, the autotools defaulted to 'gcc' as the C compiler and did
+ not process C++ options. Since FreeBSD 10, the default compiler has
+ been clang (via 'cc').
+
+ The default compilers have been set to 'cc' for C and 'c++' for C++,
+ which will pick up clang and clang++ respectively on FreeBSD 10+.
+ Additionally, clang options are now set correctly for both C and C++
+ and g++ options will now be set if that compiler is being used (an
+ omission from the former functionality).
+
+ (DER - 2020/11/28, HDFFV-11193)
+
+ - Fixed POSIX problems when building w/ gcc on Solaris
+
+ When building on Solaris using gcc, the POSIX symbols were not
+ being set correctly, which could lead to issues like clock_gettime()
+ not being found.
+
+ The standard is now set to gnu99 when building with gcc on Solaris,
+ which allows POSIX things to be #defined and linked correctly. This
+ differs slightly from the gcc norm, where we set the standard to c99
+ and manually set POSIX #define symbols.
+
+ (DER - 2020/11/25, HDFFV-11191)
+
+ - Added a configure-time option to consider certain compiler warnings
+ as errors
+
+ A new configure-time option was added that converts some compiler warnings
+ to errors. This is mainly intended for library developers and currently
+ only works for gcc and clang. The warnings that are considered errors
+ will appear in the generated libhdf5.settings file. These warnings apply
+ to C and C++ code and will appear in "H5 C Flags" and H5 C++ Flags",
+ respectively. They will NOT be exported to h5cc, etc.
+
+ The default is OFF. Building with this option may fail when compiling
+ on operating systems and with compiler versions not commonly used by
+ the library developers. Compilation may also fail when headers not
+ under the control of the library developers (e.g., mpi.h, hdfs.h) raise
+ warnings.
+
+ Autotools: --enable-warnings-as-errors
+
+ CMake: HDF5_ENABLE_WARNINGS_AS_ERRORS
+
+ (DER - 2020/11/23, HDFFV-11189)
+
+ - Autotools and CMake target added to produce doxygen generated documentation
+
+ The default is OFF or disabled.
+ Autoconf option is '--enable-doxygen'
+ autotools make target is 'doxygen' and will build all doxygen targets
+ CMake configure option is 'HDF5_BUILD_DOC'.
+ CMake target is 'doxygen' for all available doxygen targets
+ CMake target is 'hdf5lib_doc' for the src subdirectory
+
+ (ADB - 2020/11/13, HDFFV-11243)
+
+ - CMake option to use MSVC naming conventions with MinGW
+
+ HDF5_MSVC_NAMING_CONVENTION option enable to use MSVC naming conventions
+ when using a MinGW toolchain
+
+ (xan - 2020/10/30)
+
+ - CMake option to statically link gcc libs with MinGW
+
+ HDF5_MINGW_STATIC_GCC_LIBS allows to statically link libg/libstdc++
+ with the MinGW toolchain
+
+ (xan - 2020/10/30)
+
+ - CMake option to build the HDF filter plugins project as an external project
+
+ The HDF filter plugins project is a collection of registered compression
+ filters that can be dynamically loaded when needed to access data stored
+ in a hdf5 file. This CMake-only option allows the plugins to be built and
+ distributed with the hdf5 library and tools. Like the options for szip and
+ zlib, either a tgz file or a git repository can be specified for the source.
+
+ The necessary options are (see the INSTALL_CMake.txt file):
+ HDF5_ENABLE_PLUGIN_SUPPORT
+ PLUGIN_TGZ_NAME or PLUGIN_GIT_URL
+ There are more options necessary for various filters and the plugin project
+ documents should be referenced.
+
+ (ADB - 2020/10/16, OESS-98)
+
+ - Added CMake option to format source files
+
+ HDF5_ENABLE_FORMATTERS option will enable creation of targets using the
+ pattern - HDF5_*_SRC_FORMAT - where * corresponds to the source folder
+ or tool folder. All sources can be formatted by executing the format target;
+ make format
+
+ (ADB - 2020/09/24)
+
+ Library:
+ --------
+ - Change how the release part of version, in major.minor.release is checked
+ for compatibility
+
+ The HDF5 library uses a function, H5check_version, to check that
+ the version defined in the header files, which is used to compile an
+ application is compatible with the version codified in the library, which
+ the application loads at runtime. This previously required an exact match
+ or the library would print a warning, dump the build settings and then
+ abort or continue. An environment variable controlled the logic.
+
+ Now the function first checks that the library release version, in
+ major.minor.release, is not older than the version in the headers.
+ Secondly, if the release version is different, it checks if either
+ the library version or the header version is in the exception list, in
+ which case the release part of version, in major.minor.release, must
+ be exact. An environment variable still controls the logic.
+
+ (ADB - 2021/07/27)
+
+ - H5Gcreate1() now rejects size_hint parameters larger than UINT32_MAX
+
+ The size_hint value is ultimately stored in a uint32_t struct field,
+ so specifying a value larger than this on a 64-bit machine can cause
+ undefined behavior including crashing the system.
+
+ The documentation for this API call was also incorrect, stating that
+ passing a negative value would cause the library to use a default
+ value. Instead, passing a "negative" value actually passes a very large
+ value, which is probably not what the user intends and can cause
+ crashes on 64-bit systems.
+
+ The Doxygen documentation has been updated and passing values larger
+ than UINT32_MAX for size_hint will now produce a normal HDF5 error.
+
+ (DER - 2021/04/29, HDFFV-11241)
+
+
+ - H5Pset_fapl_log() no longer crashes when passed an invalid fapl ID
+
+ When passed an invalid fapl ID, H5Pset_fapl_log() would usually
+ segfault when attempting to free an uninitialized pointer in the error
+ handling code. This behavior is more common in release builds or
+ when the memory sanitization checks were not selected as a build
+ option.
+
+ The pointer is now correctly initialized and the API call now
+ produces a normal HDF5 error when fed an invalid fapl ID.
+
+ (DER - 2021/04/28, HDFFV-11240)
+
+ - Fixes a segfault when H5Pset_mdc_log_options() is called multiple times
+
+ The call incorrectly attempts to free an internal copy of the previous
+ log location string, which causes a segfault. This only happens
+ when the call is invoked multiple times on the same property list.
+ On the first call to a given fapl, the log location is set to NULL so
+ the segfault does not occur.
+
+ The string is now handled properly and the segfault no longer occurs.
+
+ (DER - 2021/04/27, HDFFV-11239)
+
+ - HSYS_GOTO_ERROR now emits the results of GetLastError() on Windows
+
+ HSYS_GOTO_ERROR is an internal macro that is used to produce error
+ messages when system calls fail. These strings include errno and the
+ the associated strerror() value, which are not particularly useful
+ when a Win32 API call fails.
+
+ On Windows, this macro has been updated to include the result of
+ GetLastError(). When a system call fails on Windows, usually only
+ one of errno and GetLastError() will be useful, however we emit both
+ for the user to parse. The Windows error message is not emitted as
+ it would be awkward to free the FormatMessage() buffer given the
+ existing HDF5 error framework. Users will have to look up the error
+ codes in MSDN.
+
+ The format string on Windows has been changed from:
+
+ "%s, errno = %d, error message = '%s'"
+
+ to:
+
+ "%s, errno = %d, error message = '%s', Win32 GetLastError() = %"PRIu32""
+
+ for those inclined to parse it for error values.
+
+ (DER - 2021/03/21)
+
+ - File locking now works on Windows
+
+ Since version 1.10.0, the HDF5 library has used a file locking scheme
+ to help enforce one reader at a time accessing an HDF5 file, which can
+ be helpful when setting up readers and writers to use the single-
+ writer/multiple-readers (SWMR) access pattern.
+
+ In the past, this was only functional on POSIX systems where flock() or
+ fcntl() were present. Windows used a no-op stub that always succeeded.
+
+ HDF5 now uses LockFileEx() and UnlockFileEx() to lock the file using the
+ same scheme as POSIX systems. We lock the entire file when we set up the
+ locks (by passing DWORDMAX as both size parameters to LockFileEx()).
+
+ (DER - 2021/03/19, HDFFV-10191)
+
+ - H5Epush_ret() now requires a trailing semicolon
+
+ H5Epush_ret() is a function-like macro that has been changed to
+ contain a `do {} while(0)` loop. Consequently, a trailing semicolon
+ is now required to end the `while` statement. Previously, a trailing
+ semi would work, but was not mandatory. This change was made to allow
+ clang-format to correctly format the source code.
+
+ (SAM - 2021/03/03)
+
+ - Improved performance of H5Sget_select_elem_pointlist
+
+ Modified library to cache the point after the last block of points
+ retrieved by H5Sget_select_elem_pointlist, so a subsequent call to the
+ same function to retrieve the next block of points from the list can
+ proceed immediately without needing to iterate over the point list.
+
+ (NAF - 2021/01/19)
+
+
+ Fortran Library:
+ ----------------
+ - H5Fget_name_f fixed to handle correctly trailing whitespaces and
+ newly allocated buffers.
+
+ (MSB - 2021/08/30, github-826,972)
+
+
+ Java Library:
+ -------------
+ - Added new H5S functions.
+
+ H5Sselect_copy, H5Sselect_shape_same, H5Sselect_adjust,
+ H5Sselect_intersect_block, H5Sselect_project_intersection,
+ H5Scombine_hyperslab, H5Smodify_select, H5Scombine_select
+ wrapper functions added.
+
+ (ADB - 2020/10/27, HDFFV-10868)
+
+
+ Tools:
+ ------
+ - Refactored the perform tools and removed dependencies on test library.
+
+ Moved the perf and h5perf tools from tools/test/perform to
+ tools/src/h5perf so that they can be installed. This required
+ that the test library dependency be removed by copying the
+ needed functions from h5test.c.
+ The standalone scripts and other perform tools remain in the
+ tools/test/perform folder.
+
+ (ADB - 2021/08/10)
+
+ - h5repack added help text for user-defined filters.
+
+ Added help text line that states the valid values of the filter flag
+ for user-defined filters;
+ filter_flag: 1 is OPTIONAL or 0 is MANDATORY
+
+ (ADB - 2021/01/14, HDFFV-11099)
+
+
+ Documentation:
+ --------------
+ - Doxygen documentation is available when configured and generated.
+ The resulting documentation files will be in the share/html subdirectory
+ of the HDF5 install directory.
+
+ (LRK - 2021/10/06)
+
+
+New platforms, languages and compilers tested
+=============================================
+ - Linux 5.13.14-200.fc34 #1 SMP x86_64 GNU/Linux Fedora34
+ - Linux 5.11.0-34-generic #36-Ubuntu SMP x86_64 GNU/Linux Ubuntu 20.04
+ - Linux 5.3.18-22-default #1 SMP x86_64 GNU/Linux SUSE15sp2
+ - Linux-4.14.0-115.21.2 #1 SMP ppc64le GNU/Linux
+ - Linux-4.12.14-150.75-default #1 SMP x86_64 GNU/Linux
+ - macOS Apple M1 11.6 Darwin 20.6.0 arm64
+ - macOS Big Sur 11.3.1 Darwin 20.4.0 x86_64
+ - clang versions 11.0.1, 12.0.5
+ - Visual Studio 2019 w/ clang 12.0.0 with MSVC-like command-line
+
+
+Bug Fixes since HDF5-1.10.7 release
+===================================
+ Library
+ -------
+ - Fixed CVE-2018-17432
+
+ The tool h5repack produced a segfault on a corrupted file which had
+ invalid rank for scalar or NULL datatype.
+
+ The problem was fixed by modifying the dataspace encode and decode
+ functions to detect and report invalid rank. h5repack now fails
+ with an error message for the corrupted file.
+
+ (BMR - 2021/10/21, HDFFV-10590)
+
+ - Fixed a segmentation fault
+
+ A segmentation fault occurred with a corrupted file.
+
+ A detection of accessing a null pointer was added to prevent the problem.
+
+ (BMR - 2021/10/14, HDFFV-11150)
+
+ - Detection of simple data transform function "x"
+
+ In the case of the simple data transform function "x" the (parallel)
+ library recognizes this is the same as not applying this data transform
+ function. This improves the I/O performance. In the case of the parallel
+ library, it also avoids breaking to independent I/O, which makes it
+ possible to apply a filter when writing or reading data to or from
+ teh HDF5 file.
+
+ (JWSB - 2021/09/13)
+
+ - Fixed CVE-2020-10810 - an invalid read and memory leak when parsing
+ corrupt file space info messages
+
+ When the corrupt file from CVE-2020-10810 was parsed by the library,
+ the code that imports the version 0 file space info object header
+ message to the version 1 struct could read past the buffer read from
+ the disk, causing an invalid memory read. Not catching this error would
+ cause downstream errors that eventually resulted in a previously
+ allocated buffer to be unfreed when the library shut down. In builds
+ where the free lists are in use, this could result in an infinite loop
+ and SIGABRT when the library shuts down.
+
+ We now track the buffer size and raise an error on attempts to read
+ past the end of it.
+
+ (DER - 2021/08/12, HDFFV-11053)
+
+ - Fixed CVE-2018-14460
+
+ The tool h5repack produced a segfault when the rank in dataspace
+ message was corrupted, causing invalid read while decoding the
+ dimension sizes.
+
+ The problem was fixed by ensuring that decoding the dimension sizes
+ and max values will not go beyong the end of the buffer.
+
+ (BMR - 2021/05/12, HDFFV-11223)
+
+ - Fixed CVE-2018-11206
+
+ The tool h5dump produced a segfault when the size of a fill value
+ message was corrupted and caused a buffer overflow.
+
+ The problem was fixed by verifying the fill value's size
+ against the buffer size before attempting to access the buffer.
+
+ (BMR - 2021/03/15, HDFFV-10480)
+
+ - Fixed CVE-2018-14033 (same issue as CVE-2020-10811)
+
+ The tool h5dump produced a segfault when the storage size message
+ was corrupted and caused a buffer overflow.
+
+ The problem was fixed by verifying the storage size against the
+ buffer size before attempting to access the buffer.
+
+ (BMR - 2021/03/15, HDFFV-11159/HDFFV-11049)
+
+ - Remove underscores on header file guards
+
+ Header file guards used a variety of underscores at the beginning of the define.
+
+ Removed all leading (some trailing) underscores from header file guards.
+
+ (ADB - 2021/03/03, #361)
+
+
+ Java Library
+ ------------
+ - The H5FArray.java class, in which virtually the entire execution time
+ is spent using the HDFNativeData method that converts from an array
+ of bytes to an array of the destination Java type.
+
+ 1. Convert the entire byte array into a 1-d array of the desired type,
+ rather than performing 1 conversion per row;
+ 2. Use the Java Arrays method copyOfRange to grab the section of the
+ array from (1) that is desired to be inserted into the destination array.
+
+ (PGT,ADB - 2020/12/29, HDFFV-10865)
+
+
+ Configuration
+ -------------
+ - Corrected path searched by CMake find_package command
+
+ The install path for cmake find_package files had been changed to use
+ "share/cmake"
+ for all platforms. However the trailing "hdf5" directory was not removed.
+ This "hdf5" additional directory has been removed.
+
+ (ADB - 2021/09/27)
+
+ - Corrected pkg-config compile script
+
+ It was discovered that the position of the "$@" argument for the command
+ in the compile script may fail on some platforms and configurations. The
+ position of the "$@"command argument was moved before the pkg-config sub command.
+
+ (ADB - 2021/08/30)
+
+ - Fixed CMake C++ compiler flags
+
+ A recent refactoring of the C++ configure files accidently removed the
+ file that executed the enable_language command for C++ needed by the
+ HDFCXXCompilerFlags.cmake file. Also updated the intel warnings files,
+ including adding support for windows platforms.
+
+ (ADB - 2021/08/10)
+
+ - Autotools clang debug optimization level change
+
+ HDF5 1.10.7 erroneously sets the debug optimization level to "-g" when
+ building with clang via the Autotools. This has now been set to:
+
+ -Og clang 4+ or Xcode 9+
+ -O1 otherwise
+
+ (DER - 2021/07/28, HDFFV-11192)
+
+ - Better support for libaec (open-source Szip library) in CMake
+
+ Implemented better support for libaec 1.0.5 (or later) library. This version
+ of libaec contains improvements for better integration with HDF5. Furthermore,
+ the variable USE_LIBAEC_STATIC has been introduced to allow to make use of
+ static version of libaec library. Use libaec_DIR or libaec_ROOT to set
+ the location in which libaec can be found.
+
+ Be aware, the Szip library of libaec 1.0.4 depends on another library within
+ libaec library. This dependency is not specified in the current CMake
+ configuration which means that one can not use the static Szip library of
+ libaec 1.0.4 when building HDF5. This has been resolved in libaec 1.0.5.
+
+ (JWSB - 2021/06/22)
+
+ - Refactor CMake configure for Fortran
+
+ The Fortran configure tests for KINDs reused a single output file that was
+ read to form the Integer and Real Kinds defines. However, if config was run
+ more then once, the CMake completed variable prevented the tests from executing
+ again and the last value saved in the file was used to create the define.
+ Creating separate files for each KIND solved the issue.
+
+ In addition the test for H5_PAC_C_MAX_REAL_PRECISION was not pulling in
+ defines for proper operation and did not define H5_PAC_C_MAX_REAL_PRECISION
+ correctly for a zero value. This was fixed by supplying the required defines.
+ In addition it was moved from the Fortran specific HDF5UseFortran.camke file
+ to the C centric ConfigureChecks.cmake file.
+
+ (ADB - 2021/06/03)
+
+ - Remove arbitrary warning flag groups from CMake builds
+
+ The arbitrary groups were created to reduce the quantity of warnings being
+ reported that overwhelmed testing report systems. Considerable work has
+ been accomplished to reduce the warning count and these arbitrary groups
+ are no longer needed.
+ Also the default for all warnings, HDF5_ENABLE_ALL_WARNINGS, is now ON.
+
+ Visual Studio warnings C4100, C4706, and C4127 have been moved to
+ developer warnings, HDF5_ENABLE_DEV_WARNINGS, and are disabled for normal builds.
+
+ (ADB - 2021/03/22, HDFFV-11228)
+
+ - Reclassify CMake messages, to allow new modes and --log-level option
+
+ CMake message commands have a mode argument. By default, STATUS mode
+ was chosen for any non-error message. CMake version 3.15 added additional
+ modes, NOTICE, VERBOSE, DEBUG and TRACE. All message commands with a mode
+ of STATUS were reviewed and most were reclassified as VERBOSE. The new
+ mode was protected by a check for a CMake version of at least 3.15. If CMake
+ version 3.17 or above is used, the user can use the command line option
+ of "--log-level" to further restrict which message commands are displayed.
+
+ (ADB - 2021/01/11, HDFFV-11144)
+
+ - Fixes Autotools determination of the stat struct having an st_blocks field
+
+ A missing parenthesis in an autoconf macro prevented building the test
+ code used to determine if the stat struct contains the st_blocks field.
+ Now that the test functions correctly, the H5_HAVE_STAT_ST_BLOCKS #define
+ found in H5pubconf.h will be defined correctly on both the Autotools and
+ CMake. This #define is only used in the tests and does not affect the
+ HDF5 C library.
+
+ (DER - 2021/01/07, HDFFV-11201)
+
+
+ Tools
+ -----
+ - Changed how h5dump and h5ls identify long double.
+
+ Long double support is not consistent across platforms. Tools will always
+ identify long double as 128-bit [little/big]-endian float nn-bit precision.
+ New test file created for datasets with attributes for float, double and
+ long double. In addition any unknown integer or float datatype will now
+ also show the number of bits for precision.
+ These files are also used in the java tests.
+
+ (ADB - 2021/03/24, HDFFV-11229)
+
+ - Fixed tools argument parsing.
+
+ Tools parsing used the length of the option from the long array to match
+ the option from the command line. This incorrectly matched a shorter long
+ name option that happened to be a subset of another long option.
+ Changed to match whole names.
+
+ (ADB - 2021/01/19, HDFFV-11106)
+
+
+ Documentation
+ -------------
+ - Updated doxygen comments with changes for release
+
+ (ADB - 2021/05/17)
+
+
+ C++ APIs
+ --------
+ - Added DataSet::operator=
+
+ Some compilers complain if the copy constructor is given explicitly
+ but the assignment operator is implicitly set to default.
+
+ (2021/05/19)
+
+
+Platforms Tested
+================
+
+ Linux 5.13.14-200.fc34 GNU gcc (GCC) 11.2.1 2021078 (Red Hat 11.2.1-1)
+ #1 SMP x86_64 GNU/Linux GNU Fortran (GCC) 11.2.1 2021078 (Red Hat 11.2.1-1)
+ Fedora34 clang version 12.0.1 (Fedora 12.0.1-1.fc34)
+ (cmake and autotools)
+
+ Linux 5.11.0-34-generic GNU gcc (GCC) 9.3.0-17ubuntu1
+ #36-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 9.3.0-17ubuntu1
+ Ubuntu 20.04 Ubuntu clang version 10.0.0-4
+ (cmake and autotools)
+
+ Linux 5.8.0-63-generic GNU gcc (GCC) 10.3.0-1ubuntu1
+ #71-Ubuntu SMP x86_64 GNU/Linux GNU Fortran (GCC) 10.3.0-1ubuntu1
+ Ubuntu20.10 Ubuntu clang version 11.0.0-2
+ (cmake and autotools)
+
+ Linux 5.3.18-22-default GNU gcc (SUSE Linux) 7.5.0
+ #1 SMP x86_64 GNU/Linux GNU Fortran (SUSE Linux) 7.5.0
+ SUSE15sp2 clang version 7.0.1 (tags/RELEASE_701/final 349238)
+ (cmake and autotools)
+
+ Linux-4.14.0-115.21.2 spectrum-mpi/rolling-release
+ #1 SMP ppc64le GNU/Linux clang 8.0.1, 11.0.1
+ (lassen) GCC 7.3.1
+ XL 16.1.1.2
+ (cmake)
+
+ Linux-4.12.14-150.75-default cray-mpich/7.7.10
+ #1 SMP x86_64 GNU/Linux GCC 7.3.0, 8.2.0
+ (cori) Intel (R) Version 19.0.3.199
+ (cmake)
+
+ Linux-4.12.14-197.86-default cray-mpich/7.7.6
+ # 1SMP x86_64 GNU/Linux GCC 7.3.0, 9.3.0, 10.2.0
+ (mutrino) Intel (R) Version 17.0.4, 18.0.5, 19.1.3
+ (cmake)
+
+ Linux 3.10.0-1160.36.2.el7.ppc64 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
+ #1 SMP ppc64be GNU/Linux g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
+ Power8 (echidna) GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
+
+ Linux 3.10.0-1160.24.1.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ Centos7 Version 4.8.5 20150623 (Red Hat 4.8.5-4)
+ (jelly/kituo/moohan) Version 4.9.3, Version 5.3.0, Version 6.3.0,
+ Version 7.2.0, Version 8.3.0, Version 9.1.0
+ Intel(R) C (icc), C++ (icpc), Fortran (icc)
+ compilers:
+ Version 17.0.0.098 Build 20160721
+ GNU C (gcc) and C++ (g++) 4.8.5 compilers
+ with NAG Fortran Compiler Release 6.1(Tozai)
+ Intel(R) C (icc) and C++ (icpc) 17.0.0.098 compilers
+ with NAG Fortran Compiler Release 6.1(Tozai)
+ MPICH 3.1.4 compiled with GCC 4.9.3
+ MPICH 3.3 compiled with GCC 7.2.0
+ OpenMPI 2.1.6 compiled with icc 18.0.1
+ OpenMPI 3.1.3 and 4.0.0 compiled with GCC 7.2.0
+ PGI C, Fortran, C++ for 64-bit target on
+ x86_64;
+ Version 19.10-0
+
+ Linux-3.10.0-1127.0.0.1chaos openmpi-4.0.0
+ #1 SMP x86_64 GNU/Linux clang 6.0.0, 11.0.1
+ (quartz) GCC 7.3.0, 8.1.0
+ Intel 16.0.4, 18.0.2, 19.0.4
+
+ macOS Apple M1 11.6 Apple clang version 12.0.5 (clang-1205.0.22.11)
+ Darwin 20.6.0 arm64 gfortran GNU Fortran (Homebrew GCC 11.2.0) 11.1.0
+ (macmini-m1) Intel icc/icpc/ifort version 2021.3.0 202106092021.3.0 20210609
+
+ macOS Big Sur 11.3.1 Apple clang version 12.0.5 (clang-1205.0.22.9)
+ Darwin 20.4.0 x86_64 gfortran GNU Fortran (Homebrew GCC 10.2.0_3) 10.2.0
+ (bigsur-1) Intel icc/icpc/ifort version 2021.2.0 20210228
+
+ macOS High Sierra 10.13.6 Apple LLVM version 10.0.0 (clang-1000.10.44.4)
+ 64-bit gfortran GNU Fortran (GCC) 6.3.0
+ (bear) Intel icc/icpc/ifort version 19.0.4.233 20190416
+
+ macOS Sierra 10.12.6 Apple LLVM version 9.0.0 (clang-900.39.2)
+ 64-bit gfortran GNU Fortran (GCC) 7.4.0
+ (kite) Intel icc/icpc/ifort version 17.0.2
+
+ Mac OS X El Capitan 10.11.6 Apple clang version 7.3.0 from Xcode 7.3
+ 64-bit gfortran GNU Fortran (GCC) 5.2.0
+ (osx1011test) Intel icc/icpc/ifort version 16.0.2
+
+ Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
+ #1 SMP x86_64 GNU/Linux compilers:
+ Centos6 Version 4.4.7 20120313
+ (platypus) Version 4.9.3, 5.3.0, 6.2.0
+ MPICH 3.1.4 compiled with GCC 4.9.3
+
+ Windows 10 x64 MSVC C/C++ 19.0.24215.1
+ w/ Visual Studio 2015 Intel C/C++/Fortran 18.0.5.20180823
+ (cmake)
+
+ Windows 10 x64 MSVC C/C++ 19.16.27045.0
+ w/ Visual Studio 2017 Intel C/C++/Fortran 19.0.5.20190815
+ (cmake)
+
+ Windows 10 x64 MSVC C/C++ 9.29.30133.0
+ w/ Visual Studio 2019 clang C/C++ 12.0.0
+ (cmake) IntelLLVM C/C++ 2021.3.0 with MSVC-like command-line
+
+ Windows 10 x64 MSVC C/C++ is 19.29.30133.0
+ w/ Visual Studio 2019 MSMPI 10.1 (C only)
+ (cmake)
+
+
+Configuration Options Tested
+on above platforms CMake option(=ON) Autotools option
+============================ ========================= ===================
+C Library
+F90/F2003 HDF5_BUILD_FORTRAN --enable-fortran
+C++ HDF5_BUILD_CPP_LIB --enable-cxx
+Java HDF5_BUILD_JAVA --enable-java
+Zlib HDF5_ENABLE_Z_LIB_SUPPORT --with-zlib=<dir>
+SZIP(Libaec) HDF5_ENABLE_SZIP_SUPPORT --with-szlib=<dir>
+C/Fortran Parallel HDF5_ENABLE_PARALLEL --enable-parallel
+Shared C,C++,F90 BUILD_SHARED_LIBS --enable-shared(1)
+Threadsafe,
+ C Library only HDF5_ENABLE_THREADSAFE --enable-threadsafe
+
+Other test
+configurations:
+clang sanitizers HDF5_ENABLE_SANITIZERS No sanitizer option
+ for autotools
+ Address USE_SANITIZER: Address
+ Leak USE_SANITIZER: Leak
+ Memory USE_SANITIZER: Memory
+ Undefined USE_SANITIZER: Undefined
+
+VFDs:
+ Direct HDF5_ENABLE_DIRECT_VFD --ennable-direct-vfd
+ HDFS HDF5_ENABLE_HDFS --with-libhdfs=DIR
+ Mirror HDF5_ENABLE_MIRROR_VFD --enable-mirror-vfd
+ ROS3 HDF5_ENABLE_ROS3_VFD --enable-ros3-vfd
+================================================================================
+(1) enabled by default
+
+
+Known Problems
+==============
+ Corrupted files submitted with CVE-2019-08396 and CVE-2019-8398 that caused
+ segmentation faults with h5repack in HDF5 versions before 1.10.8 are no
+ longer segfaulting, but a specific fix for the problems has not yet been
+ identified and is still under investigation in jira issues HDFFV-10710 and
+ HDFFV-10712. A third corrupted file submitted with CVE-2019-9152 still
+ causes a segmentation fault with h5repack; details in HDFFV-10719.
+
+ Setting a variable-length dataset fill value will leak the memory allocated
+ for the p field of the hvl_t struct. A fix is in progress for this.
+ HDFFV-10840
+
+ CMake files do not behave correctly with paths containing spaces.
+ Do not use spaces in paths because the required escaping for handling spaces
+ results in very complex and fragile build files.
+ ADB - 2019/05/07
+
+ At present, metadata cache images may not be generated by parallel
+ applications. Parallel applications can read files with metadata cache
+ images, but since this is a collective operation, a deadlock is possible
+ if one or more processes do not participate.
+
+ Two tests fail attempting collective writes with OpenMPI 3.0.0/GCC-7.2.0-2.29:
+ testphdf5 (ecdsetw, selnone, cchunk1, cchunk3, cchunk4, and actualio)
+ t_shapesame (sscontig2)
+
+ CPP ptable test fails on both VS2017 and VS2019 with Intel compiler, JIRA
+ issue: HDFFV-10628. This test will pass with VS2015 with Intel compiler.
+
+ The subsetting option in ph5diff currently will fail and should be avoided.
+ The subsetting option works correctly in serial h5diff.
+
+ Known problems in previous releases can be found in the HISTORY*.txt files
+ in the HDF5 source. Please report any new problems found to
+ help@hdfgroup.org.
+
+
+CMake vs. Autotools installations
+=================================
+While both build systems produce similar results, there are differences.
+Each system produces the same set of folders on linux (only CMake works
+on standard Windows); bin, include, lib and share. Autotools places the
+COPYING and RELEASE.txt file in the root folder, CMake places them in
+the share folder.
+
+The bin folder contains the tools and the build scripts. Additionally, CMake
+creates dynamic versions of the tools with the suffix "-shared". Autotools
+installs one set of tools depending on the "--enable-shared" configuration
+option.
+ build scripts
+ -------------
+ Autotools: h5c++, h5cc, h5fc
+ CMake: h5c++, h5cc, h5hlc++, h5hlcc
+
+The include folder holds the header files and the fortran mod files. CMake
+places the fortran mod files into separate shared and static subfolders,
+while Autotools places one set of mod files into the include folder. Because
+CMake produces a tools library, the header files for tools will appear in
+the include folder.
+
+The lib folder contains the library files, and CMake adds the pkgconfig
+subfolder with the hdf5*.pc files used by the bin/build scripts created by
+the CMake build. CMake separates the C interface code from the fortran code by
+creating C-stub libraries for each Fortran library. In addition, only CMake
+installs the tools library. The names of the szip libraries are different
+between the build systems.
+
+The share folder will have the most differences because CMake builds include
+a number of CMake specific files for support of CMake's find_package and support
+for the HDF5 Examples CMake project.
+
+The issues with the gif tool are:
+ HDFFV-10592 CVE-2018-17433
+ HDFFV-10593 CVE-2018-17436
+ HDFFV-11048 CVE-2020-10809
+These CVE issues have not yet been addressed and can be avoided by not building
+the gif tool. Disable building the High-Level tools with these options:
+ autotools: --disable-hltools
+ cmake: HDF5_BUILD_HL_TOOLS=OFF
+
+
+
%%%%1.10.7%%%%
HDF5 version 1.10.7 released on 2020-09-11