Merge pull request #1549 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10

* commit 'eadc7752609b383f8444bd3b20b31a2b3416e428':
  TRILABS-111 Add missing batch scripts

16 files changed, 160 insertions, 67 deletions

diff --git a/bin/batch/cori_ctestP.sl.in.cmake b/bin/batch/cori_ctestP.sl.in.cmake
new file mode 100644
index 0000000..287fe3c
--- /dev/null
+++ b/bin/batch/cori_ctestP.sl.in.cmake
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -C haswell
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestP
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/cori_ctestS.sl.in.cmake b/bin/batch/cori_ctestS.sl.in.cmake
new file mode 100644
index 0000000..50bef6b
--- /dev/null
+++ b/bin/batch/cori_ctestS.sl.in.cmake
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH -C haswell
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"
diff --git a/bin/batch/cori_knl_ctestP.sl.in.cmake b/bin/batch/cori_knl_ctestP.sl.in.cmake
new file mode 100644
index 0000000..82378ec
--- /dev/null
+++ b/bin/batch/cori_knl_ctestP.sl.in.cmake
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -C knl,quad,cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestP
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+
diff --git a/bin/batch/cori_knl_ctestS.sl.in.cmake b/bin/batch/cori_knl_ctestS.sl.in.cmake
new file mode 100644
index 0000000..bcb4881
--- /dev/null
+++ b/bin/batch/cori_knl_ctestS.sl.in.cmake
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH -C knl,quad, cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"
diff --git a/bin/batch/ctestP.lsf.in.cmake b/bin/batch/ctestP.lsf.in.cmake
new file mode 100644
index 0000000..2777f39
--- /dev/null
+++ b/bin/batch/ctestP.lsf.in.cmake
@@ -0,0 +1,19 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 30                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestPerrors.txt        #stderr
+#BSUB -o ctestPoutput.txt        #stdout
+#BSUB -J hdf5_ctestP             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+##date; hostname
+##echo -n 'JobID is '; echo $LSB_JOBID
+
+cd @HDF5_BINARY_DIR@
+echo "Run parallel test command. Test output will be in build/ctestP.out"
+ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
+
+echo "Done running ctest parallel command."
diff --git a/bin/batch/sbatch_ctestP.sl b/bin/batch/ctestP.sl.in.cmake
index e967dce..8d216d6 100644
--- a/bin/batch/sbatch_ctestP.sl
+++ b/bin/batch/ctestP.sl.in.cmake
@@ -5,11 +5,10 @@
 #SBATCH --mail-type=BEGIN,END,FAIL
 ##SBATCH --mail-user=<username>@sandia.gov
 #SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
+#SBATCH --job-name=h5_ctestP
 
-
-cd build
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
 
 echo "Run $CMD. Test output will be in build/ctestP.out"
 $CMD >& ctestP.out
diff --git a/bin/batch/ctestS.lsf.in.cmake b/bin/batch/ctestS.lsf.in.cmake
new file mode 100644
index 0000000..7ef5af5
--- /dev/null
+++ b/bin/batch/ctestS.lsf.in.cmake
@@ -0,0 +1,18 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 29                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestSerrors.txt        #stderr
+#BSUB -o ctestSoutput.txt        #stdout
+#BSUB -J hdf5_ctestS             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+cd @HDF5_BINARY_DIR@
+echo "Run command. Test output will be in build/ctestS.out"
+ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
+
+##$CMD  >& ctestS.out
+echo "Done running command."
+
diff --git a/bin/batch/sbatch_ctestS.sl b/bin/batch/ctestS.sl.in.cmake
index a103356..4f96bb9 100644
--- a/bin/batch/sbatch_ctestS.sl
+++ b/bin/batch/ctestS.sl.in.cmake
@@ -7,9 +7,8 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
 $CMD  >& ctestS.out
diff --git a/bin/batch/knl_ctestP.sl b/bin/batch/knl_ctestP.sl.in.cmake
index 3a03fe2..79dfb89 100644
--- a/bin/batch/knl_ctestP.sl
+++ b/bin/batch/knl_ctestP.sl.in.cmake
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-#SBATCH -p knl -C quad,flat
+#SBATCH -p knl -C quad,cache
 #SBATCH --nodes=1
 #SBATCH -t 00:30:00
 #SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,9 +8,9 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-cd build
+cd @HDF5_BINARY_DIR@
 #run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
 
 echo "Run $CMD. Test output will be in build/ctestP.out"
 $CMD >& ctestP.out
diff --git a/bin/batch/knl_ctestS.sl b/bin/batch/knl_ctestS.sl.in.cmake
index 5b77c5b..af6353b 100644
--- a/bin/batch/knl_ctestS.sl
+++ b/bin/batch/knl_ctestS.sl.in.cmake
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-#SBATCH -p knl -C quad,flat
+#SBATCH -p knl -C quad,cache
 #SBATCH --nodes=1
 #SBATCH -t 00:30:00
 #SBATCH --mail-type=BEGIN,END,FAIL
@@ -8,8 +8,8 @@
 #SBATCH --export=ALL
 #SBATCH --job-name=h5_ctestS
 
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
 
 echo "Run $CMD. Test output will be in build/ctestS.out"
 $CMD  >& ctestS.out
diff --git a/bin/batch/knl_ctestSP.sl b/bin/batch/knl_ctestSP.sl
deleted file mode 100644
index 56da347..0000000
--- a/bin/batch/knl_ctestSP.sl
+++ /dev/null
@@ -1,28 +0,0 @@
-#!/bin/bash
-
-#SBATCH -p knl -C quad,flat
-#SBATCH --nodes=1
-#SBATCH -t 01:00:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-module load cmake
-module load craype-hugepages4M
-
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
-
-
-#run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/bin/batch/ray_ctestP.lsf.in.cmake b/bin/batch/ray_ctestP.lsf.in.cmake
new file mode 100644
index 0000000..082276a
--- /dev/null
+++ b/bin/batch/ray_ctestP.lsf.in.cmake
@@ -0,0 +1,20 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -n 6                       #number of nodes
+#BSUB -R "span[ptile=6]"
+#BSUB -W 30                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestPerrors.txt        #stderr
+#BSUB -o ctestPoutput.txt        #stdout
+#BSUB -J hdf5_ctestP             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+##date; hostname
+##echo -n 'JobID is '; echo $LSB_JOBID
+
+cd @HDF5_BINARY_DIR@
+echo "Run parallel test command. Test output will be in build/ctestP.out"
+ctest . -R 'MPI_TEST_' -E t_cache_image -C Release -T test >& ctestP.out
+
+echo "Done running ctest parallel command."
diff --git a/bin/batch/ray_ctestS.lsf.in.cmake b/bin/batch/ray_ctestS.lsf.in.cmake
new file mode 100644
index 0000000..da20438
--- /dev/null
+++ b/bin/batch/ray_ctestS.lsf.in.cmake
@@ -0,0 +1,18 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -n 1                       #number of nodes
+#BSUB -W 29                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestSerrors.txt        #stderr
+#BSUB -o ctestSoutput.txt        #stdout
+#BSUB -J hdf5_ctestS             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+cd @HDF5_BINARY_DIR@
+echo "Run command. Test output will be in build/ctestS.out"
+ctest . -E 'MPI_TEST_' -C Release -j 32 -T test >& ctestS.out
+
+##$CMD  >& ctestS.out
+echo "Done running command."
+
diff --git a/bin/batch/raybsub b/bin/batch/raybsub
new file mode 100644
index 0000000..19dceef
--- /dev/null
+++ b/bin/batch/raybsub
@@ -0,0 +1,7 @@
+#!/bin/tcsh
+
+# ray.llnl.gov requires a '<' with bsub for submitting .lsf batch jobs.
+# CMake is reluctant to pass the '<', so we put it in this script and use
+# the script to submit the bsub command on ray.
+
+bsub < $1
diff --git a/bin/batch/sbatch_ctestSP.sl b/bin/batch/sbatch_ctestSP.sl
deleted file mode 100644
index 5d79d9b..0000000
--- a/bin/batch/sbatch_ctestSP.sl
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/bin/bash
-
-#SBATCH --nodes=1
-#SBATCH -t 01:00:00
-#SBATCH --mail-type=BEGIN,END,FAIL
-##SBATCH --mail-user=<username>@sandia.gov
-#SBATCH --export=ALL
-#SBATCH --job-name=h5_ctestS
-
-
-cd build
-CMD="ctest . -E TEST_PAR|H5DIFF|PERFORM -C Release -j 32 -T test"
-
-echo "Run $CMD. Test output will be in build/ctestS.out"
-$CMD  >& ctestS.out
-echo "Done running $CMD"
-
-
-#run parallel tests except t_cache_image test
-CMD="ctest . -R TEST_PAR|PH5DIFF|PERFORM -E t_cache_image -C Release -T test"
-
-echo "Run $CMD. Test output will be in build/ctestP.out"
-$CMD >& ctestP.out
-echo "Done running $CMD"
-
diff --git a/config/cmake/HDF5UseFortran.cmake b/config/cmake/HDF5UseFortran.cmake
index 6b77ca4..03597f2 100644
--- a/config/cmake/HDF5UseFortran.cmake
+++ b/config/cmake/HDF5UseFortran.cmake
@@ -234,7 +234,7 @@ foreach (KIND ${VAR} )
   set (pack_real_sizeof "${pack_real_sizeof} ${PROG_OUTPUT1},")
 endforeach ()
 
-if (pack_int_sizeof STREQUAL "")
+if (pack_real_sizeof STREQUAL "")
    message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
 endif ()