diff options
| author | Raymond Lu <songyulu@hdfgroup.org> | 2012-09-05 18:13:15 (GMT) |
|---|---|---|
| committer | Raymond Lu <songyulu@hdfgroup.org> | 2012-09-05 18:13:15 (GMT) |
| commit | 9ce6dadd4848ad1371d32f99d320efa87de32050 (patch) | |
| tree | 1d301a6b3b50dda6b3f9490291c96c9cc0ec1f77 | |
| parent | 60daa9be2b660c4583f581c85ea2177b060c4fcb (diff) | |
| parent | 1c9e159ffe6cf85a5c076f747758dc47eb7a111a (diff) | |
| download | hdf5-9ce6dadd4848ad1371d32f99d320efa87de32050.zip hdf5-9ce6dadd4848ad1371d32f99d320efa87de32050.tar.gz hdf5-9ce6dadd4848ad1371d32f99d320efa87de32050.tar.bz2 | |
[svn-r22739] ported revisions 22615 to 22737 from the trunk
235 files changed, 10703 insertions, 7102 deletions
diff --git a/CMakeLists.txt b/CMakeLists.txt index 4e688ed..340c4ec 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -159,8 +159,10 @@ ENDIF (NOT HDF5_INSTALL_INCLUDE_DIR) IF (NOT HDF5_INSTALL_DATA_DIR) IF (NOT WIN32) SET (HDF5_INSTALL_DATA_DIR share) + SET (HDF5_INSTALL_CMAKE_DIR share/cmake) ELSE (NOT WIN32) SET (HDF5_INSTALL_DATA_DIR ".") + SET (HDF5_INSTALL_CMAKE_DIR cmake) ENDIF (NOT WIN32) ENDIF (NOT HDF5_INSTALL_DATA_DIR) @@ -174,7 +176,7 @@ STRING (REGEX REPLACE ".*#define[ \t]+H5_VERS_MINOR[ \t]+([0-9]*).*$" "\\1" H5_VERS_MINOR ${_h5public_h_contents}) STRING (REGEX REPLACE ".*#define[ \t]+H5_VERS_RELEASE[ \t]+([0-9]*).*$" "\\1" H5_VERS_RELEASE ${_h5public_h_contents}) -STRING (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z.]*)\".*$" +STRING (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._]*)\".*$" "\\1" H5_VERS_SUBRELEASE ${_h5public_h_contents}) #MESSAGE (STATUS "VERSION: ${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}-${H5_VERS_SUBRELEASE}") @@ -465,7 +467,7 @@ ENDIF (CMAKE_COMPILER_IS_GNUCXX) #----------------------------------------------------------------------------- # All libs/tests/examples need the main include directories #----------------------------------------------------------------------------- -INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR} ${HDF5_SRC_DIR}) +INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR} ${HDF5_SRC_DIR} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}) #----------------------------------------------------------------------------- # Option to Enable MPI Parallel @@ -561,6 +563,9 @@ IF (HDF5_ENABLE_Z_LIB_SUPPORT) IF (NOT H5_ZLIB_HEADER) IF (NOT ZLIB_USE_EXTERNAL) FIND_PACKAGE (ZLIB NAMES ${ZLIB_PACKAGE_NAME}${HDF_PACKAGE_EXT}) + IF (NOT ZLIB_FOUND) + FIND_PACKAGE (ZLIB) # Legacy find + ENDIF (NOT ZLIB_FOUND) ENDIF (NOT ZLIB_USE_EXTERNAL) IF (ZLIB_FOUND) SET (H5_HAVE_FILTER_DEFLATE 1) @@ -568,6 +573,7 @@ IF (HDF5_ENABLE_Z_LIB_SUPPORT) SET (H5_HAVE_LIBZ 1) SET (H5_ZLIB_HEADER "zlib.h") SET (ZLIB_INCLUDE_DIR_GEN ${ZLIB_INCLUDE_DIR}) + SET (ZLIB_INCLUDE_DIRS ${ZLIB_INCLUDE_DIR}) ELSE (ZLIB_FOUND) IF (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ") EXTERNAL_ZLIB_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT} ${LIB_TYPE}) @@ -601,12 +607,16 @@ IF (HDF5_ENABLE_SZIP_SUPPORT) OPTION (HDF5_ENABLE_SZIP_ENCODING "Use SZip Encoding" OFF) IF (NOT SZIP_USE_EXTERNAL) FIND_PACKAGE (SZIP NAMES ${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT}) + IF (NOT SZIP_FOUND) + FIND_PACKAGE (SZIP) # Legacy find + ENDIF (NOT SZIP_FOUND) ENDIF (NOT SZIP_USE_EXTERNAL) IF (SZIP_FOUND) SET (H5_HAVE_FILTER_SZIP 1) SET (H5_HAVE_SZLIB_H 1) SET (H5_HAVE_LIBSZ 1) SET (SZIP_INCLUDE_DIR_GEN ${SZIP_INCLUDE_DIR}) + SET (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR}) ELSE (SZIP_FOUND) IF (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ") EXTERNAL_SZIP_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT} ${LIB_TYPE} ${HDF5_ENABLE_SZIP_ENCODING}) @@ -835,7 +845,7 @@ ENDIF (NOT HDF5_INSTALL_NO_DEVELOPMENT) IF (NOT HDF5_EXTERNALLY_CONFIGURED) INSTALL ( EXPORT ${HDF5_EXPORTED_TARGETS} - DESTINATION ${HDF5_INSTALL_DATA_DIR}/cmake/${HDF5_PACKAGE} + DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/${HDF5_PACKAGE} FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake COMPONENT configinstall ) @@ -877,7 +887,7 @@ IF (NOT HDF5_EXTERNALLY_CONFIGURED) ) INSTALL ( FILES ${HDF5_BINARY_DIR}/CMakeFiles/FindHDF5${HDF_PACKAGE_EXT}.cmake - DESTINATION ${HDF5_INSTALL_DATA_DIR}/cmake/${HDF5_PACKAGE} + DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/${HDF5_PACKAGE} COMPONENT configinstall ) ENDIF (NOT HDF5_EXTERNALLY_CONFIGURED) @@ -892,7 +902,7 @@ IF (NOT HDF5_EXTERNALLY_CONFIGURED) ) INSTALL ( FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake - DESTINATION ${HDF5_INSTALL_DATA_DIR}/cmake/${HDF5_PACKAGE} + DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/${HDF5_PACKAGE} COMPONENT configinstall ) ENDIF (NOT HDF5_EXTERNALLY_CONFIGURED) @@ -907,7 +917,7 @@ IF (NOT HDF5_EXTERNALLY_CONFIGURED) ) INSTALL ( FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_PACKAGE}${HDF5_PACKAGE_EXT}-config-version.cmake - DESTINATION ${HDF5_INSTALL_DATA_DIR}/cmake/${HDF5_PACKAGE} + DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/${HDF5_PACKAGE} COMPONENT configinstall ) ENDIF (NOT HDF5_EXTERNALLY_CONFIGURED) @@ -926,7 +936,7 @@ CONFIGURE_FILE ( ) INSTALL ( FILES ${HDF5_BINARY_DIR}/libhdf5.settings - DESTINATION ${HDF5_INSTALL_DATA_DIR}/cmake/${HDF5_PACKAGE} + DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/${HDF5_PACKAGE} COMPONENT libraries ) @@ -37,7 +37,7 @@ ./aclocal.m4 ./acsite.m4 ./configure -./configure.in +./configure.ac ./bin/COPYING ./bin/buildhdf5 @@ -1129,7 +1129,7 @@ ./tools/h5import/h5import.h ./tools/h5import/h5import.c ./tools/h5import/h5importtest.c -./tools/h5import/h5importtestutil.sh +./tools/h5import/h5importtestutil.sh.in # testfiles for h5import ./tools/h5import/testfiles/binfp64.conf @@ -1190,8 +1190,8 @@ ./tools/h5diff/h5diff_main.c ./tools/h5diff/ph5diff_main.c ./tools/h5diff/h5diffgentest.c -./tools/h5diff/testh5diff.sh -./tools/h5diff/testph5diff.sh +./tools/h5diff/testh5diff.sh.in +./tools/h5diff/testph5diff.sh.in # h5repack sources ./tools/h5repack/Makefile.am @@ -1216,7 +1216,7 @@ ./tools/h5ls/testh5ls.sh.in # h5copy sources -./tools/h5copy/testh5copy.sh +./tools/h5copy/testh5copy.sh.in ./tools/h5copy/Makefile.in ./tools/h5copy/h5copy.c ./tools/h5copy/h5copygentest.c @@ -1257,7 +1257,7 @@ ./tools/misc/h5repart.c ./tools/misc/h5repart_gentest.c ./tools/misc/repart_test.c -./tools/misc/testh5mkgrp.sh +./tools/misc/testh5mkgrp.sh.in ./tools/misc/testh5repart.sh.in ./tools/misc/talign.c ./tools/misc/testfiles/h5mkgrp_help.txt @@ -1815,6 +1815,7 @@ ./tools/h5diff/testfiles/h5diff_56.txt ./tools/h5diff/testfiles/h5diff_57.txt ./tools/h5diff/testfiles/h5diff_58.txt +./tools/h5diff/testfiles/h5diff_59.txt ./tools/h5diff/testfiles/h5diff_600.txt ./tools/h5diff/testfiles/h5diff_601.txt ./tools/h5diff/testfiles/h5diff_603.txt @@ -2180,7 +2181,7 @@ ./hl/tools/gif2h5/hdfgifwr.c ./hl/tools/gif2h5/writehdf.c ./hl/tools/gif2h5/h52gifgentst.c -./hl/tools/gif2h5/h52giftest.sh +./hl/tools/gif2h5/h52giftest.sh.in ./hl/tools/gif2h5/testfiles/image1.gif ./hl/tools/gif2h5/testfiles/h52giftst.h5 diff --git a/Makefile.in b/Makefile.in index 19219f6..1472be5 100644 --- a/Makefile.in +++ b/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -48,6 +47,23 @@ $(MAKE) all VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -67,13 +83,17 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(am__configure_deps) $(srcdir)/Makefile.am \ - $(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \ - $(top_srcdir)/configure COPYING bin/COPYING bin/README \ - bin/compile bin/config.guess bin/config.sub bin/depcomp \ - bin/install-sh bin/ltmain.sh bin/missing bin/mkinstalldirs + $(srcdir)/Makefile.in $(top_srcdir)/bin/config.guess \ + $(top_srcdir)/bin/config.sub $(top_srcdir)/bin/install-sh \ + $(top_srcdir)/bin/ltmain.sh $(top_srcdir)/bin/missing \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am $(top_srcdir)/configure \ + COPYING bin/COPYING bin/README bin/compile bin/config.guess \ + bin/config.sub bin/depcomp bin/install-sh bin/ltmain.sh \ + bin/missing bin/mkinstalldirs subdir = . ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \ @@ -82,12 +102,18 @@ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -97,20 +123,29 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ $(RECURSIVE_CLEAN_TARGETS:-recursive=) tags TAGS ctags CTAGS \ - distdir dist dist-all distcheck + cscope distdir dist dist-all distcheck ETAGS = etags CTAGS = ctags +CSCOPE = cscope DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) distdir = $(PACKAGE)-$(VERSION) top_distdir = $(distdir) am__remove_distdir = \ - { test ! -d "$(distdir)" \ - || { find "$(distdir)" -type d ! -perm -200 -exec chmod u+w {} ';' \ - && rm -fr "$(distdir)"; }; } + if test -d "$(distdir)"; then \ + find "$(distdir)" -type d ! -perm -200 -exec chmod u+w {} ';' \ + && rm -rf "$(distdir)" \ + || { sleep 5 && rm -rf "$(distdir)"; }; \ + else :; fi +am__post_remove_distdir = $(am__remove_distdir) am__relativize = \ dir0=`pwd`; \ sed_first='s,^\([^/]*\)/.*$$,\1,'; \ @@ -138,9 +173,12 @@ am__relativize = \ reldir="$$dir2" DIST_ARCHIVES = $(distdir).tar.gz GZIP_ENV = --best +DIST_TARGETS = dist-gzip distuninstallcheck_listfiles = find . -type f -print +am__distuninstallcheck_listfiles = $(distuninstallcheck_listfiles) \ + | sed 's|^\./|$(prefix)/|' | grep -v '$(infodir)/dir$$' distcleancheck_listfiles = find . -type f -print -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -158,12 +196,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -452,7 +487,7 @@ DISTCLEANFILES = config/stamp1 config/stamp2 all: all-recursive .SUFFIXES: -am--refresh: +am--refresh: Makefile @: $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(am__configure_deps) @for dep in $?; do \ @@ -477,6 +512,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am: $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(am__cd) $(srcdir) && $(AUTOCONF) @@ -494,12 +530,12 @@ distclean-libtool: -rm -f libtool config.lt # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -509,7 +545,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -523,37 +563,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -562,6 +571,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -625,8 +638,32 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscope: cscope.files + test ! -s cscope.files \ + || $(CSCOPE) -b -q $(AM_CSCOPEFLAGS) $(CSCOPEFLAGS) -i cscope.files $(CSCOPE_ARGS) + +clean-cscope: + -rm -f cscope.files + +cscope.files: clean-cscope cscopelist-recursive cscopelist + +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags + -rm -f cscope.out cscope.in.out cscope.po.out cscope.files distdir: $(DISTFILES) $(am__remove_distdir) @@ -662,13 +699,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -697,36 +731,36 @@ distdir: $(DISTFILES) || chmod -R a+r "$(distdir)" dist-gzip: distdir tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz - $(am__remove_distdir) + $(am__post_remove_distdir) dist-bzip2: distdir - tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2 - $(am__remove_distdir) + tardir=$(distdir) && $(am__tar) | BZIP2=$${BZIP2--9} bzip2 -c >$(distdir).tar.bz2 + $(am__post_remove_distdir) -dist-lzma: distdir - tardir=$(distdir) && $(am__tar) | lzma -9 -c >$(distdir).tar.lzma - $(am__remove_distdir) +dist-lzip: distdir + tardir=$(distdir) && $(am__tar) | lzip -c $${LZIP_OPT--9} >$(distdir).tar.lz + $(am__post_remove_distdir) dist-xz: distdir - tardir=$(distdir) && $(am__tar) | xz -c >$(distdir).tar.xz - $(am__remove_distdir) + tardir=$(distdir) && $(am__tar) | XZ_OPT=$${XZ_OPT--e} xz -c >$(distdir).tar.xz + $(am__post_remove_distdir) dist-tarZ: distdir tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z - $(am__remove_distdir) + $(am__post_remove_distdir) dist-shar: distdir shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz - $(am__remove_distdir) + $(am__post_remove_distdir) dist-zip: distdir -rm -f $(distdir).zip zip -rq $(distdir).zip $(distdir) - $(am__remove_distdir) + $(am__post_remove_distdir) -dist dist-all: distdir - tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz - $(am__remove_distdir) +dist dist-all: + $(MAKE) $(AM_MAKEFLAGS) $(DIST_TARGETS) am__post_remove_distdir='@:' + $(am__post_remove_distdir) # This target untars the dist file and tries a VPATH configuration. Then # it guarantees that the distribution is self-contained by making another @@ -737,8 +771,8 @@ distcheck: dist GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\ *.tar.bz2*) \ bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\ - *.tar.lzma*) \ - lzma -dc $(distdir).tar.lzma | $(am__untar) ;;\ + *.tar.lz*) \ + lzip -dc $(distdir).tar.lz | $(am__untar) ;;\ *.tar.xz*) \ xz -dc $(distdir).tar.xz | $(am__untar) ;;\ *.tar.Z*) \ @@ -748,9 +782,9 @@ distcheck: dist *.zip*) \ unzip $(distdir).zip ;;\ esac - chmod -R a-w $(distdir); chmod a+w $(distdir) - mkdir $(distdir)/_build - mkdir $(distdir)/_inst + chmod -R a-w $(distdir) + chmod u+w $(distdir) + mkdir $(distdir)/_build $(distdir)/_inst chmod a-w $(distdir) test -d $(distdir)/_build || exit 0; \ dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \ @@ -758,6 +792,7 @@ distcheck: dist && am__cwd=`pwd` \ && $(am__cd) $(distdir)/_build \ && ../configure --srcdir=.. --prefix="$$dc_install_base" \ + $(AM_DISTCHECK_CONFIGURE_FLAGS) \ $(DISTCHECK_CONFIGURE_FLAGS) \ && $(MAKE) $(AM_MAKEFLAGS) \ && $(MAKE) $(AM_MAKEFLAGS) dvi \ @@ -781,13 +816,21 @@ distcheck: dist && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \ && cd "$$am__cwd" \ || exit 1 - $(am__remove_distdir) + $(am__post_remove_distdir) @(echo "$(distdir) archives ready for distribution: "; \ list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \ sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x' distuninstallcheck: - @$(am__cd) '$(distuninstallcheck_dir)' \ - && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \ + @test -n '$(distuninstallcheck_dir)' || { \ + echo 'ERROR: trying to run $@ with an empty' \ + '$$(distuninstallcheck_dir)' >&2; \ + exit 1; \ + }; \ + $(am__cd) '$(distuninstallcheck_dir)' || { \ + echo 'ERROR: cannot chdir into $(distuninstallcheck_dir)' >&2; \ + exit 1; \ + }; \ + test `$(am__distuninstallcheck_listfiles) | wc -l` -eq 0 \ || { echo "ERROR: files left after uninstall:" ; \ if test -n "$(DESTDIR)"; then \ echo " (check DESTDIR support)"; \ @@ -816,10 +859,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -903,14 +951,16 @@ ps-am: uninstall-am: uninstall-local -.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) ctags-recursive \ - install-am install-strip tags-recursive +.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) \ + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local am--refresh check check-am clean \ - clean-generic clean-libtool ctags ctags-recursive dist \ - dist-all dist-bzip2 dist-gzip dist-lzma dist-shar dist-tarZ \ - dist-xz dist-zip distcheck distclean distclean-generic \ + clean-cscope clean-generic clean-libtool cscope cscopelist \ + cscopelist-recursive ctags ctags-recursive dist dist-all \ + dist-bzip2 dist-gzip dist-lzip dist-shar dist-tarZ dist-xz \ + dist-zip distcheck distclean distclean-generic \ distclean-libtool distclean-tags distcleancheck distdir \ distuninstallcheck dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-dvi \ @@ -1,4 +1,4 @@ -HDF5 version 1.9.124 currently under development +HDF5 version 1.9.128 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ @@ -1,7 +1,7 @@ -# generated automatically by aclocal 1.11.1 -*- Autoconf -*- +# generated automatically by aclocal 1.12.3 -*- Autoconf -*- + +# Copyright (C) 1996-2012 Free Software Foundation, Inc. -# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, -# 2005, 2006, 2007, 2008, 2009 Free Software Foundation, Inc. # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -13,13 +13,13 @@ m4_ifndef([AC_AUTOCONF_VERSION], [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl -m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.68],, -[m4_warning([this file was generated for autoconf 2.68. +m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.69],, +[m4_warning([this file was generated for autoconf 2.69. You have another version of autoconf. It may work, but is not guaranteed to. If you have problems, you may need to regenerate the build system entirely. -To do so, use the procedure documented by the package, typically `autoreconf'.])]) +To do so, use the procedure documented by the package, typically 'autoreconf'.])]) -# Copyright (C) 2002, 2003, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# Copyright (C) 2002-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, @@ -31,10 +31,10 @@ To do so, use the procedure documented by the package, typically `autoreconf'.]) # generated from the m4 files accompanying Automake X.Y. # (This private macro should not be called outside this file.) AC_DEFUN([AM_AUTOMAKE_VERSION], -[am__api_version='1.11' +[am__api_version='1.12' dnl Some users find AM_AUTOMAKE_VERSION and mistake it for a way to dnl require some minimum version. Point them to the right macro. -m4_if([$1], [1.11.1], [], +m4_if([$1], [1.12.3], [], [AC_FATAL([Do not call $0, use AM_INIT_AUTOMAKE([$1]).])])dnl ]) @@ -50,22 +50,22 @@ m4_define([_AM_AUTOCONF_VERSION], []) # Call AM_AUTOMAKE_VERSION and AM_AUTOMAKE_VERSION so they can be traced. # This function is AC_REQUIREd by AM_INIT_AUTOMAKE. AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION], -[AM_AUTOMAKE_VERSION([1.11.1])dnl +[AM_AUTOMAKE_VERSION([1.12.3])dnl m4_ifndef([AC_AUTOCONF_VERSION], [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl _AM_AUTOCONF_VERSION(m4_defn([AC_AUTOCONF_VERSION]))]) # AM_AUX_DIR_EXPAND -*- Autoconf -*- -# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc. +# Copyright (C) 2001-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # For projects using AC_CONFIG_AUX_DIR([foo]), Autoconf sets -# $ac_aux_dir to `$srcdir/foo'. In other projects, it is set to -# `$srcdir', `$srcdir/..', or `$srcdir/../..'. +# $ac_aux_dir to '$srcdir/foo'. In other projects, it is set to +# '$srcdir', '$srcdir/..', or '$srcdir/../..'. # # Of course, Automake must honor this variable whenever it calls a # tool from the auxiliary directory. The problem is that $srcdir (and @@ -84,7 +84,7 @@ _AM_AUTOCONF_VERSION(m4_defn([AC_AUTOCONF_VERSION]))]) # # The reason of the latter failure is that $top_srcdir and $ac_aux_dir # are both prefixed by $srcdir. In an in-source build this is usually -# harmless because $srcdir is `.', but things will broke when you +# harmless because $srcdir is '.', but things will broke when you # start a VPATH build or use an absolute $srcdir. # # So we could use something similar to $top_srcdir/$ac_aux_dir/missing, @@ -110,22 +110,19 @@ am_aux_dir=`cd $ac_aux_dir && pwd` # AM_CONDITIONAL -*- Autoconf -*- -# Copyright (C) 1997, 2000, 2001, 2003, 2004, 2005, 2006, 2008 -# Free Software Foundation, Inc. +# Copyright (C) 1997-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 9 - # AM_CONDITIONAL(NAME, SHELL-CONDITION) # ------------------------------------- # Define a conditional. AC_DEFUN([AM_CONDITIONAL], -[AC_PREREQ(2.52)dnl - ifelse([$1], [TRUE], [AC_FATAL([$0: invalid condition: $1])], - [$1], [FALSE], [AC_FATAL([$0: invalid condition: $1])])dnl +[AC_PREREQ([2.52])dnl + m4_if([$1], [TRUE], [AC_FATAL([$0: invalid condition: $1])], + [$1], [FALSE], [AC_FATAL([$0: invalid condition: $1])])dnl AC_SUBST([$1_TRUE])dnl AC_SUBST([$1_FALSE])dnl _AM_SUBST_NOTMAKE([$1_TRUE])dnl @@ -144,16 +141,14 @@ AC_CONFIG_COMMANDS_PRE( Usually this means the macro was only invoked conditionally.]]) fi])]) -# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2009 -# Free Software Foundation, Inc. +# Copyright (C) 1999-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 10 -# There are a few dirty hacks below to avoid letting `AC_PROG_CC' be +# There are a few dirty hacks below to avoid letting 'AC_PROG_CC' be # written in clear, in which case automake, when reading aclocal.m4, # will think it sees a *use*, and therefore will trigger all it's # C support machinery. Also note that it means that autoscan, seeing @@ -163,7 +158,7 @@ fi])]) # _AM_DEPENDENCIES(NAME) # ---------------------- # See how the compiler implements dependency checking. -# NAME is "CC", "CXX", "GCJ", or "OBJC". +# NAME is "CC", "CXX", "OBJC", "OBJCXX", "UPC", or "GJC". # We try a few techniques and use that to set a single cache variable. # # We don't AC_REQUIRE the corresponding AC_PROG_CC since the latter was @@ -176,12 +171,13 @@ AC_REQUIRE([AM_OUTPUT_DEPENDENCY_COMMANDS])dnl AC_REQUIRE([AM_MAKE_INCLUDE])dnl AC_REQUIRE([AM_DEP_TRACK])dnl -ifelse([$1], CC, [depcc="$CC" am_compiler_list=], - [$1], CXX, [depcc="$CXX" am_compiler_list=], - [$1], OBJC, [depcc="$OBJC" am_compiler_list='gcc3 gcc'], - [$1], UPC, [depcc="$UPC" am_compiler_list=], - [$1], GCJ, [depcc="$GCJ" am_compiler_list='gcc3 gcc'], - [depcc="$$1" am_compiler_list=]) +m4_if([$1], [CC], [depcc="$CC" am_compiler_list=], + [$1], [CXX], [depcc="$CXX" am_compiler_list=], + [$1], [OBJC], [depcc="$OBJC" am_compiler_list='gcc3 gcc'], + [$1], [OBJCXX], [depcc="$OBJCXX" am_compiler_list='gcc3 gcc'], + [$1], [UPC], [depcc="$UPC" am_compiler_list=], + [$1], [GCJ], [depcc="$GCJ" am_compiler_list='gcc3 gcc'], + [depcc="$$1" am_compiler_list=]) AC_CACHE_CHECK([dependency style of $depcc], [am_cv_$1_dependencies_compiler_type], @@ -189,8 +185,9 @@ AC_CACHE_CHECK([dependency style of $depcc], # We make a subdir and do the tests there. Otherwise we can end up # making bogus files that we don't know about and never remove. For # instance it was reported that on HP-UX the gcc test will end up - # making a dummy file named `D' -- because `-MD' means `put the output - # in D'. + # making a dummy file named 'D' -- because '-MD' means "put the output + # in D". + rm -rf conftest.dir mkdir conftest.dir # Copy depcomp to subdir because otherwise we won't find it if we're # using a relative directory. @@ -229,16 +226,16 @@ AC_CACHE_CHECK([dependency style of $depcc], : > sub/conftest.c for i in 1 2 3 4 5 6; do echo '#include "conftst'$i'.h"' >> sub/conftest.c - # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with - # Solaris 8's {/usr,}/bin/sh. - touch sub/conftst$i.h + # Using ": > sub/conftst$i.h" creates only sub/conftst1.h with + # Solaris 10 /bin/sh. + echo '/* dummy */' > sub/conftst$i.h done echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf - # We check with `-c' and `-o' for the sake of the "dashmstdout" + # We check with '-c' and '-o' for the sake of the "dashmstdout" # mode. It turns out that the SunPro C++ compiler does not properly - # handle `-M -o', and we need to detect this. Also, some Intel - # versions had trouble with output in subdirs + # handle '-M -o', and we need to detect this. Also, some Intel + # versions had trouble with output in subdirs. am__obj=sub/conftest.${OBJEXT-o} am__minus_obj="-o $am__obj" case $depmode in @@ -247,16 +244,16 @@ AC_CACHE_CHECK([dependency style of $depcc], test "$am__universal" = false || continue ;; nosideeffect) - # after this tag, mechanisms are not by side-effect, so they'll - # only be used when explicitly requested + # After this tag, mechanisms are not by side-effect, so they'll + # only be used when explicitly requested. if test "x$enable_dependency_tracking" = xyes; then continue else break fi ;; - msvisualcpp | msvcmsys) - # This compiler won't grok `-c -o', but also, the minuso test has + msvc7 | msvc7msys | msvisualcpp | msvcmsys) + # This compiler won't grok '-c -o', but also, the minuso test has # not run yet. These depmodes are late enough in the game, and # so weak that their functioning should not be impacted. am__obj=conftest.${OBJEXT-o} @@ -304,7 +301,7 @@ AM_CONDITIONAL([am__fastdep$1], [ # AM_SET_DEPDIR # ------------- # Choose a directory name for dependency files. -# This macro is AC_REQUIREd in _AM_DEPENDENCIES +# This macro is AC_REQUIREd in _AM_DEPENDENCIES. AC_DEFUN([AM_SET_DEPDIR], [AC_REQUIRE([AM_SET_LEADING_DOT])dnl AC_SUBST([DEPDIR], ["${am__leading_dot}deps"])dnl @@ -314,28 +311,33 @@ AC_SUBST([DEPDIR], ["${am__leading_dot}deps"])dnl # AM_DEP_TRACK # ------------ AC_DEFUN([AM_DEP_TRACK], -[AC_ARG_ENABLE(dependency-tracking, -[ --disable-dependency-tracking speeds up one-time build - --enable-dependency-tracking do not reject slow dependency extractors]) +[AC_ARG_ENABLE([dependency-tracking], [dnl +AS_HELP_STRING( + [--enable-dependency-tracking], + [do not reject slow dependency extractors]) +AS_HELP_STRING( + [--disable-dependency-tracking], + [speeds up one-time build])]) if test "x$enable_dependency_tracking" != xno; then am_depcomp="$ac_aux_dir/depcomp" AMDEPBACKSLASH='\' + am__nodep='_no' fi AM_CONDITIONAL([AMDEP], [test "x$enable_dependency_tracking" != xno]) AC_SUBST([AMDEPBACKSLASH])dnl _AM_SUBST_NOTMAKE([AMDEPBACKSLASH])dnl +AC_SUBST([am__nodep])dnl +_AM_SUBST_NOTMAKE([am__nodep])dnl ]) # Generate code to set up dependency tracking. -*- Autoconf -*- -# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2008 -# Free Software Foundation, Inc. +# Copyright (C) 1999-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -#serial 5 # _AM_OUTPUT_DEPENDENCY_COMMANDS # ------------------------------ @@ -354,7 +356,7 @@ AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS], # Strip MF so we end up with the name of the file. mf=`echo "$mf" | sed -e 's/:.*$//'` # Check whether this is an Automake generated Makefile or not. - # We used to match only the files named `Makefile.in', but + # We used to match only the files named 'Makefile.in', but # some people rename them; so instead we look at the file content. # Grep'ing the first line is not enough: some people post-process # each Makefile.in and add a new line on top of each file to say so. @@ -366,21 +368,19 @@ AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS], continue fi # Extract the definition of DEPDIR, am__include, and am__quote - # from the Makefile without running `make'. + # from the Makefile without running 'make'. DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"` test -z "$DEPDIR" && continue am__include=`sed -n 's/^am__include = //p' < "$mf"` test -z "am__include" && continue am__quote=`sed -n 's/^am__quote = //p' < "$mf"` - # When using ansi2knr, U may be empty or an underscore; expand it - U=`sed -n 's/^U = //p' < "$mf"` # Find all dependency output files, they are included files with # $(DEPDIR) in their names. We invoke sed twice because it is the # simplest approach to changing $(DEPDIR) to its actual value in the # expansion. for file in `sed -n " s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \ - sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do + sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g'`; do # Make sure the directory exists. test -f "$dirpart/$file" && continue fdir=`AS_DIRNAME(["$file"])` @@ -398,7 +398,7 @@ AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS], # This macro should only be invoked once -- use via AC_REQUIRE. # # This code is only required when automatic dependency tracking -# is enabled. FIXME. This creates each `.P' file that we will +# is enabled. FIXME. This creates each '.P' file that we will # need in order to bootstrap the dependency handling code. AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS], [AC_CONFIG_COMMANDS([depfiles], @@ -406,29 +406,23 @@ AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS], [AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"]) ]) -# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005 -# Free Software Foundation, Inc. +# Copyright (C) 1996-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 8 - # AM_CONFIG_HEADER is obsolete. It has been replaced by AC_CONFIG_HEADERS. AU_DEFUN([AM_CONFIG_HEADER], [AC_CONFIG_HEADERS($@)]) # Do all the work for Automake. -*- Autoconf -*- -# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, -# 2005, 2006, 2008, 2009 Free Software Foundation, Inc. +# Copyright (C) 1996-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 16 - # This macro actually does too much. Some checks are only needed if # your package does certain things. But this isn't really a big deal. @@ -473,31 +467,41 @@ AC_SUBST([CYGPATH_W]) # Define the identity of the package. dnl Distinguish between old-style and new-style calls. m4_ifval([$2], -[m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl +[AC_DIAGNOSE([obsolete], +[$0: two- and three-arguments forms are deprecated. For more info, see: +http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_INIT_AUTOMAKE-invocation]) +m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl AC_SUBST([PACKAGE], [$1])dnl AC_SUBST([VERSION], [$2])], [_AM_SET_OPTIONS([$1])dnl dnl Diagnose old-style AC_INIT with new-style AM_AUTOMAKE_INIT. -m4_if(m4_ifdef([AC_PACKAGE_NAME], 1)m4_ifdef([AC_PACKAGE_VERSION], 1), 11,, +m4_if( + m4_ifdef([AC_PACKAGE_NAME], [ok]):m4_ifdef([AC_PACKAGE_VERSION], [ok]), + [ok:ok],, [m4_fatal([AC_INIT should be called with package and version arguments])])dnl AC_SUBST([PACKAGE], ['AC_PACKAGE_TARNAME'])dnl AC_SUBST([VERSION], ['AC_PACKAGE_VERSION'])])dnl _AM_IF_OPTION([no-define],, -[AC_DEFINE_UNQUOTED(PACKAGE, "$PACKAGE", [Name of package]) - AC_DEFINE_UNQUOTED(VERSION, "$VERSION", [Version number of package])])dnl +[AC_DEFINE_UNQUOTED([PACKAGE], ["$PACKAGE"], [Name of package]) + AC_DEFINE_UNQUOTED([VERSION], ["$VERSION"], [Version number of package])])dnl # Some tools Automake needs. AC_REQUIRE([AM_SANITY_CHECK])dnl AC_REQUIRE([AC_ARG_PROGRAM])dnl -AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version}) -AM_MISSING_PROG(AUTOCONF, autoconf) -AM_MISSING_PROG(AUTOMAKE, automake-${am__api_version}) -AM_MISSING_PROG(AUTOHEADER, autoheader) -AM_MISSING_PROG(MAKEINFO, makeinfo) +AM_MISSING_PROG([ACLOCAL], [aclocal-${am__api_version}]) +AM_MISSING_PROG([AUTOCONF], [autoconf]) +AM_MISSING_PROG([AUTOMAKE], [automake-${am__api_version}]) +AM_MISSING_PROG([AUTOHEADER], [autoheader]) +AM_MISSING_PROG([MAKEINFO], [makeinfo]) AC_REQUIRE([AM_PROG_INSTALL_SH])dnl AC_REQUIRE([AM_PROG_INSTALL_STRIP])dnl -AC_REQUIRE([AM_PROG_MKDIR_P])dnl +AC_REQUIRE([AC_PROG_MKDIR_P])dnl +# For better backward compatibility. To be removed once Automake 1.9.x +# dies out for good. For more background, see: +# <http://lists.gnu.org/archive/html/automake/2012-07/msg00001.html> +# <http://lists.gnu.org/archive/html/automake/2012-07/msg00014.html> +AC_SUBST([mkdir_p], ['$(MKDIR_P)']) # We need awk for the "check" target. The system "awk" is bad on # some platforms. AC_REQUIRE([AC_PROG_AWK])dnl @@ -508,28 +512,35 @@ _AM_IF_OPTION([tar-ustar], [_AM_PROG_TAR([ustar])], [_AM_PROG_TAR([v7])])]) _AM_IF_OPTION([no-dependencies],, [AC_PROVIDE_IFELSE([AC_PROG_CC], - [_AM_DEPENDENCIES(CC)], - [define([AC_PROG_CC], - defn([AC_PROG_CC])[_AM_DEPENDENCIES(CC)])])dnl + [_AM_DEPENDENCIES([CC])], + [m4_define([AC_PROG_CC], + m4_defn([AC_PROG_CC])[_AM_DEPENDENCIES([CC])])])dnl AC_PROVIDE_IFELSE([AC_PROG_CXX], - [_AM_DEPENDENCIES(CXX)], - [define([AC_PROG_CXX], - defn([AC_PROG_CXX])[_AM_DEPENDENCIES(CXX)])])dnl + [_AM_DEPENDENCIES([CXX])], + [m4_define([AC_PROG_CXX], + m4_defn([AC_PROG_CXX])[_AM_DEPENDENCIES([CXX])])])dnl AC_PROVIDE_IFELSE([AC_PROG_OBJC], - [_AM_DEPENDENCIES(OBJC)], - [define([AC_PROG_OBJC], - defn([AC_PROG_OBJC])[_AM_DEPENDENCIES(OBJC)])])dnl + [_AM_DEPENDENCIES([OBJC])], + [m4_define([AC_PROG_OBJC], + m4_defn([AC_PROG_OBJC])[_AM_DEPENDENCIES([OBJC])])])dnl +dnl Support for Objective C++ was only introduced in Autoconf 2.65, +dnl but we still cater to Autoconf 2.62. +m4_ifdef([AC_PROG_OBJCXX], +[AC_PROVIDE_IFELSE([AC_PROG_OBJCXX], + [_AM_DEPENDENCIES([OBJCXX])], + [m4_define([AC_PROG_OBJCXX], + m4_defn([AC_PROG_OBJCXX])[_AM_DEPENDENCIES([OBJCXX])])])])dnl ]) _AM_IF_OPTION([silent-rules], [AC_REQUIRE([AM_SILENT_RULES])])dnl -dnl The `parallel-tests' driver may need to know about EXEEXT, so add the -dnl `am__EXEEXT' conditional if _AM_COMPILER_EXEEXT was seen. This macro +dnl The 'parallel-tests' driver may need to know about EXEEXT, so add the +dnl 'am__EXEEXT' conditional if _AM_COMPILER_EXEEXT was seen. This macro dnl is hooked onto _AC_COMPILER_EXEEXT early, see below. AC_CONFIG_COMMANDS_PRE(dnl [m4_provide_if([_AM_COMPILER_EXEEXT], [AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"])])])dnl ]) -dnl Hook into `_AC_COMPILER_EXEEXT' early to learn its expansion. Do not +dnl Hook into '_AC_COMPILER_EXEEXT' early to learn its expansion. Do not dnl add the conditional right here, as _AC_COMPILER_EXEEXT may be further dnl mangled by Autoconf and run in a shell conditional statement. m4_define([_AC_COMPILER_EXEEXT], @@ -557,7 +568,7 @@ for _am_header in $config_headers :; do done echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count]) -# Copyright (C) 2001, 2003, 2005, 2008 Free Software Foundation, Inc. +# Copyright (C) 2001-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, @@ -576,16 +587,14 @@ if test x"${install_sh}" != xset; then install_sh="\${SHELL} $am_aux_dir/install-sh" esac fi -AC_SUBST(install_sh)]) +AC_SUBST([install_sh])]) -# Copyright (C) 2003, 2005 Free Software Foundation, Inc. +# Copyright (C) 2003-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 2 - # Check whether the underlying file-system supports filenames # with a leading dot. For instance MS-DOS doesn't. AC_DEFUN([AM_SET_LEADING_DOT], @@ -602,20 +611,17 @@ AC_SUBST([am__leading_dot])]) # Add --enable-maintainer-mode option to configure. -*- Autoconf -*- # From Jim Meyering -# Copyright (C) 1996, 1998, 2000, 2001, 2002, 2003, 2004, 2005, 2008 -# Free Software Foundation, Inc. +# Copyright (C) 1996-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 5 - # AM_MAINTAINER_MODE([DEFAULT-MODE]) # ---------------------------------- # Control maintainer-specific portions of Makefiles. -# Default is to disable them, unless `enable' is passed literally. -# For symmetry, `disable' may be passed as well. Anyway, the user +# Default is to disable them, unless 'enable' is passed literally. +# For symmetry, 'disable' may be passed as well. Anyway, the user # can override the default with the --enable/--disable switch. AC_DEFUN([AM_MAINTAINER_MODE], [m4_case(m4_default([$1], [disable]), @@ -623,13 +629,14 @@ AC_DEFUN([AM_MAINTAINER_MODE], [disable], [m4_define([am_maintainer_other], [enable])], [m4_define([am_maintainer_other], [enable]) m4_warn([syntax], [unexpected argument to AM@&t@_MAINTAINER_MODE: $1])]) -AC_MSG_CHECKING([whether to am_maintainer_other maintainer-specific portions of Makefiles]) +AC_MSG_CHECKING([whether to enable maintainer-specific portions of Makefiles]) dnl maintainer-mode's default is 'disable' unless 'enable' is passed AC_ARG_ENABLE([maintainer-mode], -[ --][am_maintainer_other][-maintainer-mode am_maintainer_other make rules and dependencies not useful - (and sometimes confusing) to the casual installer], - [USE_MAINTAINER_MODE=$enableval], - [USE_MAINTAINER_MODE=]m4_if(am_maintainer_other, [enable], [no], [yes])) + [AS_HELP_STRING([--]am_maintainer_other[-maintainer-mode], + am_maintainer_other[ make rules and dependencies not useful + (and sometimes confusing) to the casual installer])], + [USE_MAINTAINER_MODE=$enableval], + [USE_MAINTAINER_MODE=]m4_if(am_maintainer_other, [enable], [no], [yes])) AC_MSG_RESULT([$USE_MAINTAINER_MODE]) AM_CONDITIONAL([MAINTAINER_MODE], [test $USE_MAINTAINER_MODE = yes]) MAINT=$MAINTAINER_MODE_TRUE @@ -641,14 +648,12 @@ AU_DEFUN([jm_MAINTAINER_MODE], [AM_MAINTAINER_MODE]) # Check to see how 'make' treats includes. -*- Autoconf -*- -# Copyright (C) 2001, 2002, 2003, 2005, 2009 Free Software Foundation, Inc. +# Copyright (C) 2001-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 4 - # AM_MAKE_INCLUDE() # ----------------- # Check to see how make treats includes. @@ -666,7 +671,7 @@ am__quote= _am_result=none # First try GNU make style include. echo "include confinc" > confmf -# Ignore all kinds of additional output from `make'. +# Ignore all kinds of additional output from 'make'. case `$am_make -s -f confmf 2> /dev/null` in #( *the\ am__doit\ target*) am__include=include @@ -693,15 +698,12 @@ rm -f confinc confmf # Fake the existence of programs that GNU maintainers use. -*- Autoconf -*- -# Copyright (C) 1997, 1999, 2000, 2001, 2003, 2004, 2005, 2008 -# Free Software Foundation, Inc. +# Copyright (C) 1997-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 6 - # AM_MISSING_PROG(NAME, PROGRAM) # ------------------------------ AC_DEFUN([AM_MISSING_PROG], @@ -709,7 +711,6 @@ AC_DEFUN([AM_MISSING_PROG], $1=${$1-"${am_missing_run}$2"} AC_SUBST($1)]) - # AM_MISSING_HAS_RUN # ------------------ # Define MISSING if not defined so far and test if it supports --run. @@ -730,59 +731,31 @@ if eval "$MISSING --run true"; then am_missing_run="$MISSING --run " else am_missing_run= - AC_MSG_WARN([`missing' script is too old or missing]) + AC_MSG_WARN(['missing' script is too old or missing]) fi ]) -# Copyright (C) 2003, 2004, 2005, 2006 Free Software Foundation, Inc. -# -# This file is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# AM_PROG_MKDIR_P -# --------------- -# Check for `mkdir -p'. -AC_DEFUN([AM_PROG_MKDIR_P], -[AC_PREREQ([2.60])dnl -AC_REQUIRE([AC_PROG_MKDIR_P])dnl -dnl Automake 1.8 to 1.9.6 used to define mkdir_p. We now use MKDIR_P, -dnl while keeping a definition of mkdir_p for backward compatibility. -dnl @MKDIR_P@ is magic: AC_OUTPUT adjusts its value for each Makefile. -dnl However we cannot define mkdir_p as $(MKDIR_P) for the sake of -dnl Makefile.ins that do not define MKDIR_P, so we do our own -dnl adjustment using top_builddir (which is defined more often than -dnl MKDIR_P). -AC_SUBST([mkdir_p], ["$MKDIR_P"])dnl -case $mkdir_p in - [[\\/$]]* | ?:[[\\/]]*) ;; - */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; -esac -]) - # Helper functions for option handling. -*- Autoconf -*- -# Copyright (C) 2001, 2002, 2003, 2005, 2008 Free Software Foundation, Inc. +# Copyright (C) 2001-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 4 - # _AM_MANGLE_OPTION(NAME) # ----------------------- AC_DEFUN([_AM_MANGLE_OPTION], [[_AM_OPTION_]m4_bpatsubst($1, [[^a-zA-Z0-9_]], [_])]) # _AM_SET_OPTION(NAME) -# ------------------------------ +# -------------------- # Set option NAME. Presently that only means defining a flag for this option. AC_DEFUN([_AM_SET_OPTION], -[m4_define(_AM_MANGLE_OPTION([$1]), 1)]) +[m4_define(_AM_MANGLE_OPTION([$1]), [1])]) # _AM_SET_OPTIONS(OPTIONS) -# ---------------------------------- +# ------------------------ # OPTIONS is a space-separated list of Automake options. AC_DEFUN([_AM_SET_OPTIONS], [m4_foreach_w([_AM_Option], [$1], [_AM_SET_OPTION(_AM_Option)])]) @@ -795,22 +768,16 @@ AC_DEFUN([_AM_IF_OPTION], # Check to make sure that the build environment is sane. -*- Autoconf -*- -# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005, 2008 -# Free Software Foundation, Inc. +# Copyright (C) 1996-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 5 - # AM_SANITY_CHECK # --------------- AC_DEFUN([AM_SANITY_CHECK], [AC_MSG_CHECKING([whether build environment is sane]) -# Just in case -sleep 1 -echo timestamp > conftest.file # Reject unsafe characters in $srcdir or the absolute working directory # name. Accept space and tab only in the latter. am_lf=' @@ -821,32 +788,40 @@ case `pwd` in esac case $srcdir in *[[\\\"\#\$\&\'\`$am_lf\ \ ]]*) - AC_MSG_ERROR([unsafe srcdir value: `$srcdir']);; + AC_MSG_ERROR([unsafe srcdir value: '$srcdir']);; esac -# Do `set' in a subshell so we don't clobber the current shell's +# Do 'set' in a subshell so we don't clobber the current shell's # arguments. Must try -L first in case configure is actually a # symlink; some systems play weird games with the mod time of symlinks # (eg FreeBSD returns the mod time of the symlink's containing # directory). if ( - set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null` - if test "$[*]" = "X"; then - # -L didn't work. - set X `ls -t "$srcdir/configure" conftest.file` - fi - rm -f conftest.file - if test "$[*]" != "X $srcdir/configure conftest.file" \ - && test "$[*]" != "X conftest.file $srcdir/configure"; then - - # If neither matched, then we have a broken ls. This can happen - # if, for instance, CONFIG_SHELL is bash and it inherits a - # broken ls alias from the environment. This has actually - # happened. Such a system could not be considered "sane". - AC_MSG_ERROR([ls -t appears to fail. Make sure there is not a broken -alias in your environment]) - fi - + am_has_slept=no + for am_try in 1 2; do + echo "timestamp, slept: $am_has_slept" > conftest.file + set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null` + if test "$[*]" = "X"; then + # -L didn't work. + set X `ls -t "$srcdir/configure" conftest.file` + fi + if test "$[*]" != "X $srcdir/configure conftest.file" \ + && test "$[*]" != "X conftest.file $srcdir/configure"; then + + # If neither matched, then we have a broken ls. This can happen + # if, for instance, CONFIG_SHELL is bash and it inherits a + # broken ls alias from the environment. This has actually + # happened. Such a system could not be considered "sane". + AC_MSG_ERROR([ls -t appears to fail. Make sure there is not a broken + alias in your environment]) + fi + if test "$[2]" = conftest.file || test $am_try -eq 2; then + break + fi + # Just in case. + sleep 1 + am_has_slept=yes + done test "$[2]" = conftest.file ) then @@ -856,36 +831,85 @@ else AC_MSG_ERROR([newly created file is older than distributed files! Check your system clock]) fi -AC_MSG_RESULT(yes)]) +AC_MSG_RESULT([yes]) +# If we didn't sleep, we still need to ensure time stamps of config.status and +# generated files are strictly newer. +am_sleep_pid= +if grep 'slept: no' conftest.file >/dev/null 2>&1; then + ( sleep 1 ) & + am_sleep_pid=$! +fi +AC_CONFIG_COMMANDS_PRE( + [AC_MSG_CHECKING([that generated files are newer than configure]) + if test -n "$am_sleep_pid"; then + # Hide warnings about reused PIDs. + wait $am_sleep_pid 2>/dev/null + fi + AC_MSG_RESULT([done])]) +rm -f conftest.file +]) -# Copyright (C) 2009 Free Software Foundation, Inc. +# Copyright (C) 2009-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 1 - # AM_SILENT_RULES([DEFAULT]) # -------------------------- # Enable less verbose build rules; with the default set to DEFAULT -# (`yes' being less verbose, `no' or empty being verbose). +# ("yes" being less verbose, "no" or empty being verbose). AC_DEFUN([AM_SILENT_RULES], -[AC_ARG_ENABLE([silent-rules], -[ --enable-silent-rules less verbose build output (undo: `make V=1') - --disable-silent-rules verbose build output (undo: `make V=0')]) -case $enable_silent_rules in -yes) AM_DEFAULT_VERBOSITY=0;; -no) AM_DEFAULT_VERBOSITY=1;; -*) AM_DEFAULT_VERBOSITY=m4_if([$1], [yes], [0], [1]);; +[AC_ARG_ENABLE([silent-rules], [dnl +AS_HELP_STRING( + [--enable-silent-rules], + [less verbose build output (undo: "make V=1")]) +AS_HELP_STRING( + [--disable-silent-rules], + [verbose build output (undo: "make V=0")])dnl +]) +case $enable_silent_rules in @%:@ ((( + yes) AM_DEFAULT_VERBOSITY=0;; + no) AM_DEFAULT_VERBOSITY=1;; + *) AM_DEFAULT_VERBOSITY=m4_if([$1], [yes], [0], [1]);; esac +dnl +dnl A few 'make' implementations (e.g., NonStop OS and NextStep) +dnl do not support nested variable expansions. +dnl See automake bug#9928 and bug#10237. +am_make=${MAKE-make} +AC_CACHE_CHECK([whether $am_make supports nested variables], + [am_cv_make_support_nested_variables], + [if AS_ECHO([['TRUE=$(BAR$(V)) +BAR0=false +BAR1=true +V=1 +am__doit: + @$(TRUE) +.PHONY: am__doit']]) | $am_make -f - >/dev/null 2>&1; then + am_cv_make_support_nested_variables=yes +else + am_cv_make_support_nested_variables=no +fi]) +if test $am_cv_make_support_nested_variables = yes; then + dnl Using '$V' instead of '$(V)' breaks IRIX make. + AM_V='$(V)' + AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' +else + AM_V=$AM_DEFAULT_VERBOSITY + AM_DEFAULT_V=$AM_DEFAULT_VERBOSITY +fi +AC_SUBST([AM_V])dnl +AM_SUBST_NOTMAKE([AM_V])dnl +AC_SUBST([AM_DEFAULT_V])dnl +AM_SUBST_NOTMAKE([AM_DEFAULT_V])dnl AC_SUBST([AM_DEFAULT_VERBOSITY])dnl AM_BACKSLASH='\' AC_SUBST([AM_BACKSLASH])dnl _AM_SUBST_NOTMAKE([AM_BACKSLASH])dnl ]) -# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc. +# Copyright (C) 2001-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, @@ -893,34 +917,32 @@ _AM_SUBST_NOTMAKE([AM_BACKSLASH])dnl # AM_PROG_INSTALL_STRIP # --------------------- -# One issue with vendor `install' (even GNU) is that you can't +# One issue with vendor 'install' (even GNU) is that you can't # specify the program used to strip binaries. This is especially # annoying in cross-compiling environments, where the build's strip # is unlikely to handle the host's binaries. # Fortunately install-sh will honor a STRIPPROG variable, so we -# always use install-sh in `make install-strip', and initialize +# always use install-sh in "make install-strip", and initialize # STRIPPROG with the value of the STRIP variable (set by the user). AC_DEFUN([AM_PROG_INSTALL_STRIP], [AC_REQUIRE([AM_PROG_INSTALL_SH])dnl -# Installed binaries are usually stripped using `strip' when the user -# run `make install-strip'. However `strip' might not be the right +# Installed binaries are usually stripped using 'strip' when the user +# run "make install-strip". However 'strip' might not be the right # tool to use in cross-compilation environments, therefore Automake -# will honor the `STRIP' environment variable to overrule this program. -dnl Don't test for $cross_compiling = yes, because it might be `maybe'. +# will honor the 'STRIP' environment variable to overrule this program. +dnl Don't test for $cross_compiling = yes, because it might be 'maybe'. if test "$cross_compiling" != no; then AC_CHECK_TOOL([STRIP], [strip], :) fi INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" AC_SUBST([INSTALL_STRIP_PROGRAM])]) -# Copyright (C) 2006, 2008 Free Software Foundation, Inc. +# Copyright (C) 2006-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 2 - # _AM_SUBST_NOTMAKE(VARIABLE) # --------------------------- # Prevent Automake from outputting VARIABLE = @VARIABLE@ in Makefile.in. @@ -928,24 +950,22 @@ AC_SUBST([INSTALL_STRIP_PROGRAM])]) AC_DEFUN([_AM_SUBST_NOTMAKE]) # AM_SUBST_NOTMAKE(VARIABLE) -# --------------------------- +# -------------------------- # Public sister of _AM_SUBST_NOTMAKE. AC_DEFUN([AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE($@)]) # Check how to create a tarball. -*- Autoconf -*- -# Copyright (C) 2004, 2005 Free Software Foundation, Inc. +# Copyright (C) 2004-2012 Free Software Foundation, Inc. # # This file is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. -# serial 2 - # _AM_PROG_TAR(FORMAT) # -------------------- # Check how to create a tarball in format FORMAT. -# FORMAT should be one of `v7', `ustar', or `pax'. +# FORMAT should be one of 'v7', 'ustar', or 'pax'. # # Substitute a variable $(am__tar) that is a command # writing to stdout a FORMAT-tarball containing the directory @@ -956,10 +976,11 @@ AC_DEFUN([AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE($@)]) # a tarball read from stdin. # $(am__untar) < result.tar AC_DEFUN([_AM_PROG_TAR], -[# Always define AMTAR for backward compatibility. -AM_MISSING_PROG([AMTAR], [tar]) +[# Always define AMTAR for backward compatibility. Yes, it's still used +# in the wild :-( We should find a proper way to deprecate it ... +AC_SUBST([AMTAR], ['$${TAR-tar}']) m4_if([$1], [v7], - [am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'], + [am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -'], [m4_case([$1], [ustar],, [pax],, [m4_fatal([Unknown tar format])]) AC_MSG_CHECKING([how to create a $1 tar archive]) @@ -967,7 +988,7 @@ AC_MSG_CHECKING([how to create a $1 tar archive]) _am_tools='gnutar m4_if([$1], [ustar], [plaintar]) pax cpio none' _am_tools=${am_cv_prog_tar_$1-$_am_tools} # Do not fold the above two line into one, because Tru64 sh and -# Solaris sh will not grok spaces in the rhs of `-'. +# Solaris sh will not grok spaces in the rhs of '-'. for _am_tool in $_am_tools do case $_am_tool in @@ -1031,8 +1052,8 @@ AC_SUBST([am__untar]) # libtool.m4 - Configure libtool for the host system. -*-Autoconf-*- # # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is free software; the Free Software Foundation gives @@ -1041,8 +1062,8 @@ AC_SUBST([am__untar]) m4_define([_LT_COPYING], [dnl # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is part of GNU Libtool. @@ -1176,6 +1197,8 @@ AC_REQUIRE([AC_CANONICAL_BUILD])dnl AC_REQUIRE([_LT_PREPARE_SED_QUOTE_VARS])dnl AC_REQUIRE([_LT_PROG_ECHO_BACKSLASH])dnl +_LT_DECL([], [PATH_SEPARATOR], [1], [The PATH separator for the build system])dnl +dnl _LT_DECL([], [host_alias], [0], [The host system])dnl _LT_DECL([], [host], [0])dnl _LT_DECL([], [host_os], [0])dnl @@ -1661,7 +1684,7 @@ m4_ifset([AC_PACKAGE_NAME], [AC_PACKAGE_NAME ])config.lt[]dnl m4_ifset([AC_PACKAGE_VERSION], [ AC_PACKAGE_VERSION]) configured by $[0], generated by m4_PACKAGE_STRING. -Copyright (C) 2010 Free Software Foundation, Inc. +Copyright (C) 2011 Free Software Foundation, Inc. This config.lt script is free software; the Free Software Foundation gives unlimited permision to copy, distribute and modify it." @@ -1825,6 +1848,7 @@ AC_DEFUN([LT_LANG], m4_case([$1], [C], [_LT_LANG(C)], [C++], [_LT_LANG(CXX)], + [Go], [_LT_LANG(GO)], [Java], [_LT_LANG(GCJ)], [Fortran 77], [_LT_LANG(F77)], [Fortran], [_LT_LANG(FC)], @@ -1846,6 +1870,29 @@ m4_defun([_LT_LANG], ])# _LT_LANG +m4_ifndef([AC_PROG_GO], [ +# NOTE: This macro has been submitted for inclusion into # +# GNU Autoconf as AC_PROG_GO. When it is available in # +# a released version of Autoconf we should remove this # +# macro and use it instead. # +m4_defun([AC_PROG_GO], +[AC_LANG_PUSH(Go)dnl +AC_ARG_VAR([GOC], [Go compiler command])dnl +AC_ARG_VAR([GOFLAGS], [Go compiler flags])dnl +_AC_ARG_VAR_LDFLAGS()dnl +AC_CHECK_TOOL(GOC, gccgo) +if test -z "$GOC"; then + if test -n "$ac_tool_prefix"; then + AC_CHECK_PROG(GOC, [${ac_tool_prefix}gccgo], [${ac_tool_prefix}gccgo]) + fi +fi +if test -z "$GOC"; then + AC_CHECK_PROG(GOC, gccgo, gccgo, false) +fi +])#m4_defun +])#m4_ifndef + + # _LT_LANG_DEFAULT_CONFIG # ----------------------- m4_defun([_LT_LANG_DEFAULT_CONFIG], @@ -1876,6 +1923,10 @@ AC_PROVIDE_IFELSE([AC_PROG_GCJ], m4_ifdef([LT_PROG_GCJ], [m4_define([LT_PROG_GCJ], defn([LT_PROG_GCJ])[LT_LANG(GCJ)])])])])]) +AC_PROVIDE_IFELSE([AC_PROG_GO], + [LT_LANG(GO)], + [m4_define([AC_PROG_GO], defn([AC_PROG_GO])[LT_LANG(GO)])]) + AC_PROVIDE_IFELSE([LT_PROG_RC], [LT_LANG(RC)], [m4_define([LT_PROG_RC], defn([LT_PROG_RC])[LT_LANG(RC)])]) @@ -1978,7 +2029,13 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err _lt_result=$? - if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then + # If there is a non-empty error log, and "single_module" + # appears in it, assume the flag caused a linker warning + if test -s conftest.err && $GREP single_module conftest.err; then + cat conftest.err >&AS_MESSAGE_LOG_FD + # Otherwise, if the output was created with a 0 exit code from + # the compiler, it worked. + elif test -f libconftest.dylib && test $_lt_result -eq 0; then lt_cv_apple_cc_single_mod=yes else cat conftest.err >&AS_MESSAGE_LOG_FD @@ -1986,6 +2043,7 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ rm -rf libconftest.dylib* rm -f conftest.* fi]) + AC_CACHE_CHECK([for -exported_symbols_list linker flag], [lt_cv_ld_exported_symbols_list], [lt_cv_ld_exported_symbols_list=no @@ -1997,6 +2055,7 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ [lt_cv_ld_exported_symbols_list=no]) LDFLAGS="$save_LDFLAGS" ]) + AC_CACHE_CHECK([for -force_load linker flag],[lt_cv_ld_force_load], [lt_cv_ld_force_load=no cat > conftest.c << _LT_EOF @@ -2014,7 +2073,9 @@ _LT_EOF echo "$LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a" >&AS_MESSAGE_LOG_FD $LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a 2>conftest.err _lt_result=$? - if test -f conftest && test ! -s conftest.err && test $_lt_result = 0 && $GREP forced_load conftest 2>&1 >/dev/null; then + if test -s conftest.err && $GREP force_load conftest.err; then + cat conftest.err >&AS_MESSAGE_LOG_FD + elif test -f conftest && test $_lt_result -eq 0 && $GREP forced_load conftest >/dev/null 2>&1 ; then lt_cv_ld_force_load=yes else cat conftest.err >&AS_MESSAGE_LOG_FD @@ -2059,8 +2120,8 @@ _LT_EOF ]) -# _LT_DARWIN_LINKER_FEATURES -# -------------------------- +# _LT_DARWIN_LINKER_FEATURES([TAG]) +# --------------------------------- # Checks for linker and compiler features on darwin m4_defun([_LT_DARWIN_LINKER_FEATURES], [ @@ -2071,6 +2132,8 @@ m4_defun([_LT_DARWIN_LINKER_FEATURES], _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported if test "$lt_cv_ld_force_load" = "yes"; then _LT_TAGVAR(whole_archive_flag_spec, $1)='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' + m4_case([$1], [F77], [_LT_TAGVAR(compiler_needs_object, $1)=yes], + [FC], [_LT_TAGVAR(compiler_needs_object, $1)=yes]) else _LT_TAGVAR(whole_archive_flag_spec, $1)='' fi @@ -2354,14 +2417,27 @@ s390*-*linux*|s390*-*tpf*|sparc*-*linux*) CFLAGS="$SAVE_CFLAGS" fi ;; -sparc*-*solaris*) +*-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if AC_TRY_EVAL(ac_compile); then case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in - yes*) LD="${LD-ld} -m elf64_sparc" ;; + yes*) + case $host in + i?86-*-solaris*) + LD="${LD-ld} -m elf_x86_64" + ;; + sparc*-*-solaris*) + LD="${LD-ld} -m elf64_sparc" + ;; + esac + # GNU ld 2.21 introduced _sol2 emulations. Use them if available. + if ${LD-ld} -V | grep _sol2 >/dev/null 2>&1; then + LD="${LD-ld}_sol2" + fi + ;; *) if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then LD="${LD-ld} -64" @@ -2438,13 +2514,13 @@ old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$tool_oldlib" ;; *) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$tool_oldlib" ;; esac - old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib" + old_archive_cmds="$old_archive_cmds~\$RANLIB \$tool_oldlib" fi case $host_os in @@ -2624,6 +2700,11 @@ AC_CACHE_VAL([lt_cv_sys_max_cmd_len], [dnl lt_cv_sys_max_cmd_len=196608 ;; + os2*) + # The test takes a long time on OS/2. + lt_cv_sys_max_cmd_len=8192 + ;; + osf*) # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not @@ -2663,7 +2744,7 @@ AC_CACHE_VAL([lt_cv_sys_max_cmd_len], [dnl # If test is not a shell built-in, we'll probably end up computing a # maximum length that is only half of the actual maximum length, but # we can't tell. - while { test "X"`func_fallback_echo "$teststring$teststring" 2>/dev/null` \ + while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \ = "X$teststring$teststring"; } >/dev/null 2>&1 && test $i != 17 # 1/2 MB should be enough do @@ -3209,7 +3290,7 @@ need_version=unknown case $host_os in aix3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' shlibpath_var=LIBPATH @@ -3218,7 +3299,7 @@ aix3*) ;; aix[[4-9]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no hardcode_into_libs=yes @@ -3283,7 +3364,7 @@ beos*) ;; bsdi[[45]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' @@ -3422,7 +3503,7 @@ m4_if([$1], [],[ ;; dgux*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' @@ -3430,10 +3511,6 @@ dgux*) shlibpath_var=LD_LIBRARY_PATH ;; -freebsd1*) - dynamic_linker=no - ;; - freebsd* | dragonfly*) # DragonFly does not have aout. When/if they implement a new # versioning mechanism, adjust this. @@ -3441,7 +3518,7 @@ freebsd* | dragonfly*) objformat=`/usr/bin/objformat` else case $host_os in - freebsd[[123]]*) objformat=aout ;; + freebsd[[23]].*) objformat=aout ;; *) objformat=elf ;; esac fi @@ -3459,7 +3536,7 @@ freebsd* | dragonfly*) esac shlibpath_var=LD_LIBRARY_PATH case $host_os in - freebsd2*) + freebsd2.*) shlibpath_overrides_runpath=yes ;; freebsd3.[[01]]* | freebsdelf3.[[01]]*) @@ -3479,17 +3556,18 @@ freebsd* | dragonfly*) ;; gnu*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH + shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; haiku*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no dynamic_linker="$host_os runtime_loader" @@ -3550,7 +3628,7 @@ hpux9* | hpux10* | hpux11*) ;; interix[[3-9]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' @@ -3566,7 +3644,7 @@ irix5* | irix6* | nonstopux*) nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; @@ -3603,9 +3681,9 @@ linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -3668,7 +3746,7 @@ netbsd*) ;; newsos6) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes @@ -3737,7 +3815,7 @@ rdos*) ;; solaris*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -3762,7 +3840,7 @@ sunos4*) ;; sysv4 | sysv4.3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -3786,7 +3864,7 @@ sysv4 | sysv4.3*) sysv4*MP*) if test -d /usr/nec ;then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH @@ -3817,7 +3895,7 @@ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -3827,7 +3905,7 @@ tpf*) ;; uts4*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -4249,7 +4327,7 @@ irix5* | irix6* | nonstopux*) lt_cv_deplibs_check_method=pass_all ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) lt_cv_deplibs_check_method=pass_all ;; @@ -4669,6 +4747,7 @@ for ac_symprfx in "" "_"; do # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK ['"\ " {last_section=section; section=\$ 3};"\ +" /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ @@ -5253,7 +5332,9 @@ m4_if([$1], [CXX], [ case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Xlinker ' - _LT_TAGVAR(lt_prog_compiler_pic, $1)='-Xcompiler -fPIC' + if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then + _LT_TAGVAR(lt_prog_compiler_pic, $1)="-Xcompiler $_LT_TAGVAR(lt_prog_compiler_pic, $1)" + fi ;; esac else @@ -5345,18 +5426,33 @@ m4_if([$1], [CXX], [ ;; *) case `$CC -V 2>&1 | sed 5q` in - *Sun\ F* | *Sun*Fortran*) + *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [[1-7]].* | *Sun*Fortran*\ 8.[[0-3]]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='' ;; + *Sun\ F* | *Sun*Fortran*) + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' + ;; *Sun\ C*) # Sun C 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' ;; + *Intel*\ [[CF]]*Compiler*) + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' + ;; + *Portland\ Group*) + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' + ;; esac ;; esac @@ -5516,7 +5612,9 @@ m4_if([$1], [CXX], [ ;; cygwin* | mingw* | cegcc*) case $cc_basename in - cl*) ;; + cl*) + _LT_TAGVAR(exclude_expsyms, $1)='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' + ;; *) _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1 DATA/;s/^.*[[ ]]__nm__\([[^ ]]*\)[[ ]][[^ ]]*/\1 DATA/;/^I[[ ]]/d;/^[[AITW]][[ ]]/s/.* //'\'' | sort | uniq > $export_symbols' _LT_TAGVAR(exclude_expsyms, $1)=['[_]+GLOBAL_OFFSET_TABLE_|[_]+GLOBAL__[FID]_.*|[_]+head_[A-Za-z0-9_]+_dll|[A-Za-z0-9_]+_dll_iname'] @@ -5541,7 +5639,6 @@ m4_if([$1], [CXX], [ _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported @@ -5792,8 +5889,7 @@ _LT_EOF xlf* | bgf* | bgxlf* | mpixlf*) # IBM XL Fortran 10.1 on PPC cannot create shared libs itself _LT_TAGVAR(whole_archive_flag_spec, $1)='--whole-archive$convenience --no-whole-archive' - _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='-rpath $libdir' + _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_TAGVAR(archive_cmds, $1)='$LD -shared $libobjs $deplibs $linker_flags -soname $soname -o $lib' if test "x$supports_anon_versioning" = xyes; then _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~ @@ -6088,6 +6184,7 @@ _LT_EOF # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, $1)='true' _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes + _LT_TAGVAR(exclude_expsyms, $1)='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1,DATA/'\'' | $SED -e '\''/^[[AITW]][[ ]]/s/.*[[ ]]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib _LT_TAGVAR(old_postinstall_cmds, $1)='chmod 644 $oldlib' @@ -6134,10 +6231,6 @@ _LT_EOF _LT_TAGVAR(hardcode_shlibpath_var, $1)=no ;; - freebsd1*) - _LT_TAGVAR(ld_shlibs, $1)=no - ;; - # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little @@ -6150,7 +6243,7 @@ _LT_EOF ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. - freebsd2*) + freebsd2.*) _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' _LT_TAGVAR(hardcode_direct, $1)=yes _LT_TAGVAR(hardcode_minus_L, $1)=yes @@ -6189,7 +6282,6 @@ _LT_EOF fi if test "$with_gnu_ld" = no; then _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir' - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='+b $libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: _LT_TAGVAR(hardcode_direct, $1)=yes _LT_TAGVAR(hardcode_direct_absolute, $1)=yes @@ -6631,9 +6723,6 @@ _LT_TAGDECL([], [no_undefined_flag], [1], _LT_TAGDECL([], [hardcode_libdir_flag_spec], [1], [Flag to hardcode $libdir into a binary during linking. This must work even if $libdir does not exist]) -_LT_TAGDECL([], [hardcode_libdir_flag_spec_ld], [1], - [[If ld is used when linking, flag to hardcode $libdir into a binary - during linking. This must work even if $libdir does not exist]]) _LT_TAGDECL([], [hardcode_libdir_separator], [1], [Whether we need a single "-rpath" flag with a separated argument]) _LT_TAGDECL([], [hardcode_direct], [0], @@ -6787,7 +6876,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported @@ -7157,7 +7245,7 @@ if test "$_lt_caught_CXX_error" != yes; then esac ;; - freebsd[[12]]*) + freebsd2.*) # C++ shared libraries reported to be fairly broken before # switch to ELF _LT_TAGVAR(ld_shlibs, $1)=no @@ -7918,12 +8006,18 @@ public class foo { } }; _LT_EOF +], [$1], [GO], [cat > conftest.$ac_ext <<_LT_EOF +package foo +func foo() { +} +_LT_EOF ]) _lt_libdeps_save_CFLAGS=$CFLAGS case "$CC $CFLAGS " in #( *\ -flto*\ *) CFLAGS="$CFLAGS -fno-lto" ;; *\ -fwhopr*\ *) CFLAGS="$CFLAGS -fno-whopr" ;; +*\ -fuse-linker-plugin*\ *) CFLAGS="$CFLAGS -fno-use-linker-plugin" ;; esac dnl Parse the compiler output and extract the necessary @@ -8120,7 +8214,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_automatic, $1)=no @@ -8253,7 +8346,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_automatic, $1)=no @@ -8436,6 +8528,73 @@ CFLAGS=$lt_save_CFLAGS ])# _LT_LANG_GCJ_CONFIG +# _LT_LANG_GO_CONFIG([TAG]) +# -------------------------- +# Ensure that the configuration variables for the GNU Go compiler +# are suitably defined. These variables are subsequently used by _LT_CONFIG +# to write the compiler configuration to `libtool'. +m4_defun([_LT_LANG_GO_CONFIG], +[AC_REQUIRE([LT_PROG_GO])dnl +AC_LANG_SAVE + +# Source file extension for Go test sources. +ac_ext=go + +# Object file extension for compiled Go test sources. +objext=o +_LT_TAGVAR(objext, $1)=$objext + +# Code to be used in simple compile tests +lt_simple_compile_test_code="package main; func main() { }" + +# Code to be used in simple link tests +lt_simple_link_test_code='package main; func main() { }' + +# ltmain only uses $CC for tagged configurations so make sure $CC is set. +_LT_TAG_COMPILER + +# save warnings/boilerplate of simple test code +_LT_COMPILER_BOILERPLATE +_LT_LINKER_BOILERPLATE + +# Allow CC to be a program name with arguments. +lt_save_CC=$CC +lt_save_CFLAGS=$CFLAGS +lt_save_GCC=$GCC +GCC=yes +CC=${GOC-"gccgo"} +CFLAGS=$GOFLAGS +compiler=$CC +_LT_TAGVAR(compiler, $1)=$CC +_LT_TAGVAR(LD, $1)="$LD" +_LT_CC_BASENAME([$compiler]) + +# Go did not exist at the time GCC didn't implicitly link libc in. +_LT_TAGVAR(archive_cmds_need_lc, $1)=no + +_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds +_LT_TAGVAR(reload_flag, $1)=$reload_flag +_LT_TAGVAR(reload_cmds, $1)=$reload_cmds + +if test -n "$compiler"; then + _LT_COMPILER_NO_RTTI($1) + _LT_COMPILER_PIC($1) + _LT_COMPILER_C_O($1) + _LT_COMPILER_FILE_LOCKS($1) + _LT_LINKER_SHLIBS($1) + _LT_LINKER_HARDCODE_LIBPATH($1) + + _LT_CONFIG($1) +fi + +AC_LANG_RESTORE + +GCC=$lt_save_GCC +CC=$lt_save_CC +CFLAGS=$lt_save_CFLAGS +])# _LT_LANG_GO_CONFIG + + # _LT_LANG_RC_CONFIG([TAG]) # ------------------------- # Ensure that the configuration variables for the Windows resource compiler @@ -8505,6 +8664,13 @@ dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([LT_AC_PROG_GCJ], []) +# LT_PROG_GO +# ---------- +AC_DEFUN([LT_PROG_GO], +[AC_CHECK_TOOL(GOC, gccgo,) +]) + + # LT_PROG_RC # ---------- AC_DEFUN([LT_PROG_RC], @@ -9169,9 +9335,24 @@ dnl AC_DEFUN([AM_DISABLE_FAST_INSTALL], []) # MODE is either `yes' or `no'. If omitted, it defaults to `both'. m4_define([_LT_WITH_PIC], [AC_ARG_WITH([pic], - [AS_HELP_STRING([--with-pic], + [AS_HELP_STRING([--with-pic@<:@=PKGS@:>@], [try to use only PIC/non-PIC objects @<:@default=use both@:>@])], - [pic_mode="$withval"], + [lt_p=${PACKAGE-default} + case $withval in + yes|no) pic_mode=$withval ;; + *) + pic_mode=default + # Look at the argument we got. We use all the common list separators. + lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," + for lt_pkg in $withval; do + IFS="$lt_save_ifs" + if test "X$lt_pkg" = "X$lt_p"; then + pic_mode=yes + fi + done + IFS="$lt_save_ifs" + ;; + esac], [pic_mode=default]) test -z "$pic_mode" && pic_mode=m4_default([$1], [default]) @@ -9343,15 +9524,15 @@ m4_define([lt_dict_filter], # @configure_input@ -# serial 3293 ltversion.m4 +# serial 3337 ltversion.m4 # This file is part of GNU Libtool -m4_define([LT_PACKAGE_VERSION], [2.4]) -m4_define([LT_PACKAGE_REVISION], [1.3293]) +m4_define([LT_PACKAGE_VERSION], [2.4.2]) +m4_define([LT_PACKAGE_REVISION], [1.3337]) AC_DEFUN([LTVERSION_VERSION], -[macro_version='2.4' -macro_revision='1.3293' +[macro_version='2.4.2' +macro_revision='1.3337' _LT_DECL(, macro_version, 0, [Which release of libtool.m4 was used?]) _LT_DECL(, macro_revision, 0) ]) diff --git a/bin/chkconfigure b/bin/chkconfigure index 03035cd..abafae8 100755 --- a/bin/chkconfigure +++ b/bin/chkconfigure @@ -18,12 +18,12 @@ # Created Date: 2004/12/07 # -# Configure: should be generated by autoconf version 2.68. -# autoconf: should be of version 2.68. +# Configure: should be generated by autoconf version 2.69. +# autoconf: should be of version 2.69. # variable initialization nerrors=0 -AUTOCONFVERSION=2.68 +AUTOCONFVERSION=2.69 AUTOCONFVERSIONLEAD='Generated by GNU Autoconf' CONFIGUREFILES="configure" diff --git a/bin/chkcopyright b/bin/chkcopyright index f5ad67a54..fe9fe49 100755 --- a/bin/chkcopyright +++ b/bin/chkcopyright @@ -57,7 +57,7 @@ SH_COPYRIGHT=/tmp/h5chkright_SH.$$ # SHELL style copyright SH_COPYRIGHT2=/tmp/h5chkright_SH2.$$ # SHELL style copyright, 2nd style. WINBAT_COPYRIGHT=/tmp/h5chkright_WINBAT.$$ # Windows Batch file Copyright notice VMSCMD_COPYRIGHT=/tmp/h5chkright_VMSCMD.$$ # VMS command file Copyright notice -CONFIGURE_IN_COPYRIGHT=/tmp/h5chkright_CONFIGURE_IN.$$ # configure.in file Copyright notice +CONFIGURE_AC_COPYRIGHT=/tmp/h5chkright_CONFIGURE_AC.$$ # configure.ac file Copyright notice tmpfixfile=/tmp/h5chkright_fix.$$ # Temporary fixed copy of file @@ -207,8 +207,8 @@ EOF @REM access to either file, you may request a copy from help@hdfgroup.org. EOF - # configure.in file Copyright notice - cat > ${CONFIGURE_IN_COPYRIGHT} << \EOF + # configure.ac file Copyright notice + cat > ${CONFIGURE_AC_COPYRIGHT} << \EOF dnl Copyright by The HDF Group. dnl Copyright by the Board of Trustees of the University of Illinois. dnl All rights reserved. @@ -635,10 +635,10 @@ VMSCMD_FILE() # Check Configure.in type files # -CONFIGURE_IN_FILE() +CONFIGURE_AC_FILE() { f=$1 - case `MATCH_COPYRIGHT $CONFIGURE_IN_COPYRIGHT $f` in + case `MATCH_COPYRIGHT $CONFIGURE_AC_COPYRIGHT $f` in PASSED) PASSED $f return @@ -646,9 +646,9 @@ CONFIGURE_IN_FILE() FAILED) # show the difference FAILED $f - $DIFF ${EXTRACTEDFILE} ${CONFIGURE_IN_COPYRIGHT} + $DIFF ${EXTRACTEDFILE} ${CONFIGURE_AC_COPYRIGHT} if [ -n "$FIXIT" ]; then - FIX_COPYRIGHT $CONFIGURE_IN_COPYRIGHT $f + FIX_COPYRIGHT $CONFIGURE_AC_COPYRIGHT $f fi ;; esac @@ -681,8 +681,8 @@ GUESS_File_Type() # Put this after C_SOURCE which may have #define and such lines. echo SHELL_FILE elif grep '^dnl' < $tmpfile > /dev/null; then - # Some lines start with a "dnl". It may be a configure.in type file. - echo CONFIGURE_IN_FILE + # Some lines start with a "dnl". It may be a configure.ac type file. + echo CONFIGURE_AC_FILE elif grep -i '^<html>' < $tmpfile > /dev/null || \ grep '^<!--' < $tmpfile > /dev/null ; then # Some lines start with a "<html>" or having an html comment tag. @@ -827,8 +827,8 @@ while read file; do *Makefile | *Makefile.in | *Makefile.am | Makefile.dist ) MAKE_FILE ${file} ;; - configure.in ) - CONFIGURE_IN_FILE ${file} + configure.ac ) + CONFIGURE_AC_FILE ${file} ;; *.bat | *.BAT ) # Windows Batch files @@ -71,7 +71,7 @@ use strict; # the command line) then the first line of the README.txt and RELEASE.txt files # one directory above the H5public.h file is also modified so it looks # something like: This is hdf5-1.2.3-pre1 currently under development. -# The AC_INIT macro in configure.in will also change in this case to be +# The AC_INIT macro in configure.ac will also change in this case to be # something like: AC_INIT([HDF5], [hdf5-1.2.3-pre1], [help@hdfgroup.org]) # Version changes are also reflected in the Windows-maintained H5pubconf.h # file. @@ -159,10 +159,10 @@ while ($_ = shift) { die "mutually exclusive options given\n" if $set && $inc; # Determine file to use as H5public.h, README.txt, -# release_docs/RELEASE.txt, configure.in, windows/src/H5pubconf.h, -# vms/src/h5pubcof.h and config/lt_vers.am. -# The README.txt, release_docs/RELEASE.txt, configure.in, -# windows/src/H5pubconf.h, vms/src/h5pubconf.h and config/lt_vers.am +# release_docs/RELEASE.txt, configure.ac, windows/src/H5pubconf.h, +# vms/src/h5pubconf.h and config/lt_vers.am. +# The README.txt, release_docs/RELEASE.txt, configure.ac, +# vms/src/h5pubconf.h, windows/src/H5pubconf.h, and config/lt_vers.am # files are always in the directory above H5public.h unless ($file) { for (@files) { @@ -183,9 +183,9 @@ die "unable to read file: $README\n" unless -r $file; my $RELEASE = $file; $RELEASE =~ s/[^\/]*$/..\/release_docs\/RELEASE.txt/; die "unable to read file: $RELEASE\n" unless -r $file; -# configure.in +# configure.ac my $CONFIGURE = $file; -$CONFIGURE =~ s/[^\/]*$/..\/configure.in/; +$CONFIGURE =~ s/[^\/]*$/..\/configure.ac/; die "unable to read file: $CONFIGURE\n" unless -r $file; # windows/src/H5pubconf.h my $H5PUBCONF = $file; @@ -339,7 +339,7 @@ sub gen_configure { print FILE @contents; close FILE; - $conf =~ /^(.*?)\/?configure.in$/; + $conf =~ /^(.*?)\/?configure.ac$/; if ($1) { $rc = system("cd $1 && bin/reconfigure >/dev/null 2>/dev/null && rm -rf autom4te.cache"); @@ -352,7 +352,7 @@ sub gen_configure { } } -# Update the configure.in files and regenerate them +# Update the configure.ac files and regenerate them gen_configure("HDF5", $CONFIGURE) if $CONFIGURE; sub gen_h5pubconf { diff --git a/bin/ltmain.sh b/bin/ltmain.sh index 3061e3c..63ae69d 100644 --- a/bin/ltmain.sh +++ b/bin/ltmain.sh @@ -1,9 +1,9 @@ -# libtool (GNU libtool) 2.4 +# libtool (GNU libtool) 2.4.2 # Written by Gordon Matzigkeit <gord@gnu.ai.mit.edu>, 1996 # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, 2006, -# 2007, 2008, 2009, 2010 Free Software Foundation, Inc. +# 2007, 2008, 2009, 2010, 2011 Free Software Foundation, Inc. # This is free software; see the source for copying conditions. There is NO # warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. @@ -41,6 +41,7 @@ # --quiet, --silent don't print informational messages # --no-quiet, --no-silent # print informational messages (default) +# --no-warn don't display warning messages # --tag=TAG use configuration variables from tag TAG # -v, --verbose print more informational messages than default # --no-verbose don't print the extra informational messages @@ -69,7 +70,7 @@ # compiler: $LTCC # compiler flags: $LTCFLAGS # linker: $LD (gnu? $with_gnu_ld) -# $progname: (GNU libtool) 2.4 +# $progname: (GNU libtool) 2.4.2 # automake: $automake_version # autoconf: $autoconf_version # @@ -79,9 +80,9 @@ PROGRAM=libtool PACKAGE=libtool -VERSION=2.4 +VERSION=2.4.2 TIMESTAMP="" -package_revision=1.3293 +package_revision=1.3337 # Be Bourne compatible if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then @@ -136,15 +137,10 @@ progpath="$0" : ${CP="cp -f"} test "${ECHO+set}" = set || ECHO=${as_echo-'printf %s\n'} -: ${EGREP="grep -E"} -: ${FGREP="grep -F"} -: ${GREP="grep"} -: ${LN_S="ln -s"} : ${MAKE="make"} : ${MKDIR="mkdir"} : ${MV="mv -f"} : ${RM="rm -f"} -: ${SED="sed"} : ${SHELL="${CONFIG_SHELL-/bin/sh}"} : ${Xsed="$SED -e 1s/^X//"} @@ -387,7 +383,7 @@ case $progpath in ;; *) save_IFS="$IFS" - IFS=: + IFS=${PATH_SEPARATOR-:} for progdir in $PATH; do IFS="$save_IFS" test -x "$progdir/$progname" && break @@ -771,8 +767,8 @@ func_help () s*\$LTCFLAGS*'"$LTCFLAGS"'* s*\$LD*'"$LD"'* s/\$with_gnu_ld/'"$with_gnu_ld"'/ - s/\$automake_version/'"`(automake --version) 2>/dev/null |$SED 1q`"'/ - s/\$autoconf_version/'"`(autoconf --version) 2>/dev/null |$SED 1q`"'/ + s/\$automake_version/'"`(${AUTOMAKE-automake} --version) 2>/dev/null |$SED 1q`"'/ + s/\$autoconf_version/'"`(${AUTOCONF-autoconf} --version) 2>/dev/null |$SED 1q`"'/ p d } @@ -1052,6 +1048,7 @@ opt_finish=false opt_help=false opt_help_all=false opt_silent=: +opt_warning=: opt_verbose=: opt_silent=false opt_verbose=false @@ -1120,6 +1117,10 @@ esac opt_silent=false func_append preserve_args " $opt" ;; + --no-warning|--no-warn) + opt_warning=false +func_append preserve_args " $opt" + ;; --no-verbose) opt_verbose=false func_append preserve_args " $opt" @@ -2059,7 +2060,7 @@ func_mode_compile () *.[cCFSifmso] | \ *.ada | *.adb | *.ads | *.asm | \ *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \ - *.[fF][09]? | *.for | *.java | *.obj | *.sx | *.cu | *.cup) + *.[fF][09]? | *.for | *.java | *.go | *.obj | *.sx | *.cu | *.cup) func_xform "$libobj" libobj=$func_xform_result ;; @@ -3201,11 +3202,13 @@ func_mode_install () # Set up the ranlib parameters. oldlib="$destdir/$name" + func_to_tool_file "$oldlib" func_convert_file_msys_to_w32 + tool_oldlib=$func_to_tool_file_result func_show_eval "$install_prog \$file \$oldlib" 'exit $?' if test -n "$stripme" && test -n "$old_striplib"; then - func_show_eval "$old_striplib $oldlib" 'exit $?' + func_show_eval "$old_striplib $tool_oldlib" 'exit $?' fi # Do each command in the postinstall commands. @@ -3470,7 +3473,7 @@ static const void *lt_preloaded_setup() { # linked before any other PIC object. But we must not use # pic_flag when linking with -static. The problem exists in # FreeBSD 2.2.6 and is fixed in FreeBSD 3.1. - *-*-freebsd2*|*-*-freebsd3.0*|*-*-freebsdelf3.0*) + *-*-freebsd2.*|*-*-freebsd3.0*|*-*-freebsdelf3.0*) pic_flag_for_symtable=" $pic_flag -DFREEBSD_WORKAROUND" ;; *-*-hpux*) pic_flag_for_symtable=" $pic_flag" ;; @@ -3982,14 +3985,17 @@ func_exec_program_core () # launches target application with the remaining arguments. func_exec_program () { - for lt_wr_arg - do - case \$lt_wr_arg in - --lt-*) ;; - *) set x \"\$@\" \"\$lt_wr_arg\"; shift;; - esac - shift - done + case \" \$* \" in + *\\ --lt-*) + for lt_wr_arg + do + case \$lt_wr_arg in + --lt-*) ;; + *) set x \"\$@\" \"\$lt_wr_arg\"; shift;; + esac + shift + done ;; + esac func_exec_program_core \${1+\"\$@\"} } @@ -5057,9 +5063,15 @@ void lt_dump_script (FILE* f) { EOF func_emit_wrapper yes | - $SED -e 's/\([\\"]\)/\\\1/g' \ - -e 's/^/ fputs ("/' -e 's/$/\\n", f);/' - + $SED -n -e ' +s/^\(.\{79\}\)\(..*\)/\1\ +\2/ +h +s/\([\\"]\)/\\\1/g +s/$/\\n/ +s/\([^\n]*\).*/ fputs ("\1", f);/p +g +D' cat <<"EOF" } EOF @@ -5643,7 +5655,8 @@ func_mode_link () continue ;; - -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe|-threads) + -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe \ + |-threads|-fopenmp|-openmp|-mp|-xopenmp|-omp|-qsmp=*) func_append compiler_flags " $arg" func_append compile_command " $arg" func_append finalize_command " $arg" @@ -6147,7 +6160,8 @@ func_mode_link () lib= found=no case $deplib in - -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe|-threads) + -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe \ + |-threads|-fopenmp|-openmp|-mp|-xopenmp|-omp|-qsmp=*) if test "$linkmode,$pass" = "prog,link"; then compile_deplibs="$deplib $compile_deplibs" finalize_deplibs="$deplib $finalize_deplibs" @@ -6831,7 +6845,7 @@ func_mode_link () test "$hardcode_direct_absolute" = no; then add="$dir/$linklib" elif test "$hardcode_minus_L" = yes; then - add_dir="-L$dir" + add_dir="-L$absdir" # Try looking first in the location we're being installed to. if test -n "$inst_prefix_dir"; then case $libdir in @@ -7316,6 +7330,7 @@ func_mode_link () # which has an extra 1 added just for fun # case $version_type in + # correct linux to gnu/linux during the next big refactor darwin|linux|osf|windows|none) func_arith $number_major + $number_minor current=$func_arith_result @@ -7432,7 +7447,7 @@ func_mode_link () versuffix="$major.$revision" ;; - linux) + linux) # correct to gnu/linux during the next big refactor func_arith $current - $age major=.$func_arith_result versuffix="$major.$age.$revision" @@ -8020,6 +8035,11 @@ EOF # Test again, we may have decided not to build it any more if test "$build_libtool_libs" = yes; then + # Remove ${wl} instances when linking with ld. + # FIXME: should test the right _cmds variable. + case $archive_cmds in + *\$LD\ *) wl= ;; + esac if test "$hardcode_into_libs" = yes; then # Hardcode the library paths hardcode_libdirs= @@ -8050,7 +8070,7 @@ EOF elif test -n "$runpath_var"; then case "$perm_rpath " in *" $libdir "*) ;; - *) func_apped perm_rpath " $libdir" ;; + *) func_append perm_rpath " $libdir" ;; esac fi done @@ -8058,11 +8078,7 @@ EOF if test -n "$hardcode_libdir_separator" && test -n "$hardcode_libdirs"; then libdir="$hardcode_libdirs" - if test -n "$hardcode_libdir_flag_spec_ld"; then - eval dep_rpath=\"$hardcode_libdir_flag_spec_ld\" - else - eval dep_rpath=\"$hardcode_libdir_flag_spec\" - fi + eval "dep_rpath=\"$hardcode_libdir_flag_spec\"" fi if test -n "$runpath_var" && test -n "$perm_rpath"; then # We should set the runpath_var. @@ -9152,6 +9168,8 @@ EOF esac done fi + func_to_tool_file "$oldlib" func_convert_file_msys_to_w32 + tool_oldlib=$func_to_tool_file_result eval cmds=\"$old_archive_cmds\" func_len " $cmds" @@ -9261,7 +9279,8 @@ EOF *.la) func_basename "$deplib" name="$func_basename_result" - eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib` + func_resolve_sysroot "$deplib" + eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $func_resolve_sysroot_result` test -z "$libdir" && \ func_fatal_error "\`$deplib' is not a valid libtool archive" func_append newdependency_libs " ${lt_sysroot:+=}$libdir/$name" diff --git a/bin/reconfigure b/bin/reconfigure index 9c5b414..dba5a67 100755 --- a/bin/reconfigure +++ b/bin/reconfigure @@ -28,11 +28,13 @@ # of versions that can get confused (not even counting the m4 utility)! # HDF5 currently uses the following versions of the autotools: -AUTOCONF_VERSION="autoconf (GNU Autoconf) 2.68" -AUTOMAKE_VERSION="automake (GNU automake) 1.11.1" -AUTOHEADER_VERSION="autoheader (GNU Autoconf) 2.68" -ACLOCAL_VERSION="aclocal (GNU automake) 1.11.1" -LIBTOOL_VERSION="(GNU libtool) 2.4" +AUTOCONF_VERSION="autoconf (GNU Autoconf) 2.69" +AUTOMAKE_VERSION="automake (GNU automake) 1.12.3" +AUTOHEADER_VERSION="autoheader (GNU Autoconf) 2.69" +ACLOCAL_VERSION="aclocal (GNU automake) 1.12.3" +LIBTOOL_VERSION="(GNU libtool) 2.4.2" +M4_VERSION="m4 (GNU M4) 1.4.16" + # # When upgrading automake's version, don't forget to also update its # helper utilities, especially depcomp. @@ -41,19 +43,22 @@ LIBTOOL_VERSION="(GNU libtool) 2.4" # If paths to autotools are not specified by the user, assume tools are # running on jam in /mnt/hdf/packages and set paths accordingly. if test -z ${AUTOCONF}; then - AUTOCONF=/mnt/hdf/packages/autoconf/autoconf-2.68/bin/autoconf + AUTOCONF=/mnt/hdf/packages/autoconf/autoconf-2.69/bin/autoconf fi if test -z ${AUTOMAKE}; then - AUTOMAKE=/mnt/hdf/packages/automake/automake-1.11.1/bin/automake-1.11 + AUTOMAKE=/mnt/hdf/packages/automake/automake-1.12.3/bin/automake-1.12 fi if test -z ${AUTOHEADER}; then - AUTOHEADER=/mnt/hdf/packages/autoconf/autoconf-2.68/bin/autoheader + AUTOHEADER=/mnt/hdf/packages/autoconf/autoconf-2.69/bin/autoheader fi if test -z ${ACLOCAL}; then - ACLOCAL=/mnt/hdf/packages/automake/automake-1.11.1/bin/aclocal-1.11 + ACLOCAL=/mnt/hdf/packages/automake/automake-1.12.3/bin/aclocal-1.12 fi if test -z ${LIBTOOL}; then - LIBTOOL=/mnt/hdf/packages/libtool/libtool-2.4/bin/libtool + LIBTOOL=/mnt/hdf/packages/libtool/libtool-2.4.2/bin/libtool +fi +if test -z ${M4}; then + M4=/mnt/hdf/packages/m4/m4-1.4.16/bin/m4 fi # Check version numbers of all autotools against the "correct" versions @@ -82,14 +87,17 @@ if test -z "${LT_VERS}"; then echo "${LIBTOOL} version is not ${LIBTOOL_VERSION}" exit 1 fi - -# Use the latest version of M4 -PATH=/mnt/hdf/packages/m4/m4-1.4.15/bin:/mnt/hdf/packages/m4/m4-1.4.15/share:$PATH +M4_VERS=`${M4} --version 2>&1 | grep "${M4_VERSION}"` +if test -z "${M4_VERS}"; then + echo "${M4} version is not ${M4_VERSION}" + exit 1 +fi # Make sure that the tools are in the path. AUTOCONF_DIR=`dirname ${AUTOCONF}` LIBTOOL_DIR=`dirname ${LIBTOOL}` -PATH=${AUTOCONF_DIR}:$PATH +M4_DIR=`dirname ${M4}` +PATH=${AUTOCONF_DIR}:${M4_DIR}:$PATH # Run autoconf/automake commands in order echo ${ACLOCAL} -I ${LIBTOOL_DIR}/../share/aclocal @@ -38,6 +38,7 @@ $Source = ""; "H5FD_mpio_chunk_opt_t" => "Dh", "H5D_mpio_actual_io_mode_t" => "Di", "H5D_layout_t" => "Dl", + "H5D_mpio_no_collective_cause_t" => "Dn", "H5D_mpio_actual_chunk_opt_mode_t" => "Do", "H5D_space_status_t" => "Ds", "H5FD_mpio_xfer_t" => "Dt", diff --git a/c++/Makefile.in b/c++/Makefile.in index 0263607..8c82ca9 100644 --- a/c++/Makefile.in +++ b/c++/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # Top-level HDF5-C++ Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,24 +67,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = c++ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -78,6 +101,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -85,8 +113,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ dir0=`pwd`; \ @@ -113,7 +143,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -131,12 +161,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -408,6 +435,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -436,6 +467,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -453,12 +485,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -468,7 +500,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -482,37 +518,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -521,6 +526,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -584,6 +593,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -619,13 +642,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -661,10 +681,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -744,22 +769,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installcheck-local installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - mostlyclean mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags tags-recursive \ - uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installcheck-local installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -793,7 +819,7 @@ check-clean :: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -819,7 +845,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -843,7 +869,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -853,7 +879,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -943,7 +969,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -973,7 +999,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/c++/examples/Makefile.am b/c++/examples/Makefile.am index dc2bc7c..cd9a9f6 100644 --- a/c++/examples/Makefile.am +++ b/c++/examples/Makefile.am @@ -23,7 +23,7 @@ include $(top_srcdir)/config/commence.am # These are the programs that 'make all' or 'make prog' will build and # which 'make check' will run. List them in the order they should be run. -TEST_PROG=create readdata writedata compound extend_ds chunks h5group +EXAMPLE_PROG=create readdata writedata compound extend_ds chunks h5group TEST_SCRIPT=testh5c++.sh # These are the example files to be installed diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in index 9397a27c..e9bbf47 100644 --- a/c++/examples/Makefile.in +++ b/c++/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -56,31 +72,45 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/run-c++-ex.sh.in $(srcdir)/testh5c++.sh.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am -TESTS = +TESTS = $(TEST_SCRIPT) subdir = c++/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-c++-ex.sh testh5c++.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -98,12 +128,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -364,7 +391,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # These are the programs that 'make all' or 'make prog' will build and # which 'make check' will run. List them in the order they should be run. -TEST_PROG = create readdata writedata compound extend_ds chunks h5group +EXAMPLE_PROG = create readdata writedata compound extend_ds chunks h5group TEST_SCRIPT = testh5c++.sh # These are the example files to be installed @@ -382,12 +409,11 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/c++ # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -400,6 +426,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -428,6 +458,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -453,6 +484,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -499,10 +532,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -696,7 +734,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -722,7 +760,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -746,7 +784,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -756,7 +794,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -846,7 +884,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -876,7 +914,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/c++/examples/testh5c++.sh.in b/c++/examples/testh5c++.sh.in index 4281e3c..40d503f 100644 --- a/c++/examples/testh5c++.sh.in +++ b/c++/examples/testh5c++.sh.in @@ -19,6 +19,8 @@ # Modification: # +srcdir=@srcdir@ + # Initializations TESTNAME=h5c++ EXIT_SUCCESS=0 @@ -41,11 +43,6 @@ verbose=yes myos=`uname -s` myhostnama=`uname -n` -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # Generate some source files and library for tests. suffix=cpp # source file suffix hdf5main=${H5TOOL}_hdf5main.$suffix diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in index b83f4e1..8382deb 100644 --- a/c++/src/Makefile.in +++ b/c++/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -35,6 +34,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,6 +71,7 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \ $(srcdir)/Makefile.in $(srcdir)/h5c++.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am @@ -64,7 +81,7 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \ TESTS = subdir = c++/src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -92,6 +109,12 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" \ "$(DESTDIR)$(includedir)" LTLIBRARIES = $(lib_LTLIBRARIES) @@ -104,14 +127,27 @@ am_libhdf5_cpp_la_OBJECTS = H5Exception.lo H5IdComponent.lo \ H5StrType.lo H5ArrayType.lo H5VarLenType.lo H5CompType.lo \ H5DataSet.lo H5CommonFG.lo H5Group.lo H5File.lo libhdf5_cpp_la_OBJECTS = $(am_libhdf5_cpp_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5_cpp_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX \ $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CXXLD) \ $(AM_CXXFLAGS) $(CXXFLAGS) $(libhdf5_cpp_la_LDFLAGS) \ $(LDFLAGS) -o $@ SCRIPTS = $(bin_SCRIPTS) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -122,31 +158,34 @@ LTCXXCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CXXFLAGS) $(CXXFLAGS) -AM_V_CXX = $(am__v_CXX_$(V)) -am__v_CXX_ = $(am__v_CXX_$(AM_DEFAULT_VERBOSITY)) -am__v_CXX_0 = @echo " CXX " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CXX = $(am__v_CXX_@AM_V@) +am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@) +am__v_CXX_0 = @echo " CXX " $@; +am__v_CXX_1 = CXXLD = $(CXX) CXXLINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \ $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CXXLD = $(am__v_CXXLD_$(V)) -am__v_CXXLD_ = $(am__v_CXXLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CXXLD_0 = @echo " CXXLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CXXLD = $(am__v_CXXLD_@AM_V@) +am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@) +am__v_CXXLD_0 = @echo " CXXLD " $@; +am__v_CXXLD_1 = SOURCES = $(libhdf5_cpp_la_SOURCES) DIST_SOURCES = $(libhdf5_cpp_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac HEADERS = $(include_HEADERS) ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -164,12 +203,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -431,7 +467,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 # Include src directory @@ -484,6 +520,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -513,6 +553,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -526,7 +567,6 @@ h5c++: $(top_builddir)/config.status $(srcdir)/h5c++.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -534,6 +574,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -549,18 +591,23 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5_cpp.la: $(libhdf5_cpp_la_OBJECTS) $(libhdf5_cpp_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5_cpp.la: $(libhdf5_cpp_la_OBJECTS) $(libhdf5_cpp_la_DEPENDENCIES) $(EXTRA_libhdf5_cpp_la_DEPENDENCIES) $(AM_V_CXXLD)$(libhdf5_cpp_la_LINK) -rpath $(libdir) $(libhdf5_cpp_la_OBJECTS) $(libhdf5_cpp_la_LIBADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ @@ -588,9 +635,7 @@ uninstall-binSCRIPTS: @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 's,.*/,,;$(transform)'`; \ - test -n "$$list" || exit 0; \ - echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(bindir)" && rm -f $$files + dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -628,26 +673,23 @@ distclean-compile: .cpp.o: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $< .cpp.obj: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` .cpp.lo: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(LTCXXCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -656,8 +698,11 @@ clean-libtool: -rm -rf .libs _libs install-includeHEADERS: $(include_HEADERS) @$(NORMAL_INSTALL) - test -z "$(includedir)" || $(MKDIR_P) "$(DESTDIR)$(includedir)" @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(includedir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(includedir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ echo "$$d$$p"; \ @@ -671,9 +716,7 @@ uninstall-includeHEADERS: @$(NORMAL_UNINSTALL) @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ - test -n "$$files" || exit 0; \ - echo " ( cd '$(DESTDIR)$(includedir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(includedir)" && rm -f $$files + dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir) ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -724,6 +767,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -775,10 +832,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -866,8 +928,8 @@ uninstall-am: uninstall-binSCRIPTS uninstall-includeHEADERS \ .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-generic clean-libLTLIBRARIES clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-generic clean-libLTLIBRARIES clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binSCRIPTS \ install-data install-data-am install-dvi install-dvi-am \ @@ -919,7 +981,7 @@ mostlyclean-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -945,7 +1007,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -969,7 +1031,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -979,7 +1041,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1069,7 +1131,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1099,7 +1161,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/c++/test/CMakeLists.txt b/c++/test/CMakeLists.txt index fa5e2fd..7f4437c 100644 --- a/c++/test/CMakeLists.txt +++ b/c++/test/CMakeLists.txt @@ -44,6 +44,13 @@ TARGET_LINK_LIBRARIES (cpp_testhdf5 ) SET_TARGET_PROPERTIES (cpp_testhdf5 PROPERTIES FOLDER test/cpp) +ADD_CUSTOM_COMMAND ( + TARGET cpp_testhdf5 + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_CPP_TEST_SOURCE_DIR}/th5s.h5 ${PROJECT_BINARY_DIR}/th5s.h5 +) + ADD_TEST (NAME cpp_testhdf5 COMMAND $<TARGET_FILE:cpp_testhdf5>) IF (HDF5_TEST_VFD) diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in index f7e4958..00a8056 100644 --- a/c++/test/Makefile.in +++ b/c++/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # HDF5-C++ Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,16 +67,18 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/H5srcdir_str.h.in $(srcdir)/Makefile.am \ - $(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \ + $(srcdir)/Makefile.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am # Shared C++ libraries aren't universally supported. @CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = c++/test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -76,9 +94,22 @@ am_testhdf5_OBJECTS = testhdf5.$(OBJEXT) dsets.$(OBJEXT) \ testhdf5_OBJECTS = $(am_testhdf5_OBJECTS) testhdf5_LDADD = $(LDADD) testhdf5_DEPENDENCIES = $(LIBH5TEST) $(LIBH5CPP) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -89,30 +120,33 @@ LTCXXCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CXXFLAGS) $(CXXFLAGS) -AM_V_CXX = $(am__v_CXX_$(V)) -am__v_CXX_ = $(am__v_CXX_$(AM_DEFAULT_VERBOSITY)) -am__v_CXX_0 = @echo " CXX " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CXX = $(am__v_CXX_@AM_V@) +am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@) +am__v_CXX_0 = @echo " CXX " $@; +am__v_CXX_1 = CXXLD = $(CXX) CXXLINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \ $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CXXLD = $(am__v_CXXLD_$(V)) -am__v_CXXLD_ = $(am__v_CXXLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CXXLD_0 = @echo " CXXLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CXXLD = $(am__v_CXXLD_@AM_V@) +am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@) +am__v_CXXLD_0 = @echo " CXXLD " $@; +am__v_CXXLD_1 = SOURCES = $(testhdf5_SOURCES) DIST_SOURCES = $(testhdf5_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -130,12 +164,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -422,6 +453,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -451,6 +486,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -471,7 +507,7 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -testhdf5$(EXEEXT): $(testhdf5_OBJECTS) $(testhdf5_DEPENDENCIES) +testhdf5$(EXEEXT): $(testhdf5_OBJECTS) $(testhdf5_DEPENDENCIES) $(EXTRA_testhdf5_DEPENDENCIES) @rm -f testhdf5$(EXEEXT) $(AM_V_CXXLD)$(CXXLINK) $(testhdf5_OBJECTS) $(testhdf5_LDADD) $(LIBS) @@ -497,26 +533,23 @@ distclean-compile: .cpp.o: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $< .cpp.obj: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` .cpp.lo: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(LTCXXCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -573,6 +606,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -622,10 +669,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -711,8 +763,8 @@ uninstall-am: .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-checkPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-checkPROGRAMS clean-generic clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -748,7 +800,7 @@ mostlyclean-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -774,7 +826,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -798,7 +850,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -808,7 +860,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -898,7 +950,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -928,7 +980,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/config/Makefile.am.blank b/config/Makefile.am.blank index a091c60..05799fc 100644 --- a/config/Makefile.am.blank +++ b/config/Makefile.am.blank @@ -20,7 +20,7 @@ # ## Makefile.am template -## When automake is run, it scans configure.in to find all Makefiles used by +## When automake is run, it scans configure.ac to find all Makefiles used by ## the build that come from Makefile.in files. If there are Makefile.am's ## in any of those locations, it parses the Makefile.am's to produce ## Makefile.in's, which configure uses to create Makefiles. diff --git a/config/cmake/FindHDF5.cmake.in b/config/cmake/FindHDF5.cmake.in index 7be4de3..1b51ed4 100644 --- a/config/cmake/FindHDF5.cmake.in +++ b/config/cmake/FindHDF5.cmake.in @@ -1,5 +1,5 @@ #
-# To be used by projects that make use of Cmakeified hdf5-1.8
+# To be used by projects that make use of Cmakeified hdf5-@HDF5_PACKAGE_VERSION@
#
#
@@ -10,9 +10,9 @@ # HDF5_FOUND - True if found, otherwise all other vars are undefined
# HDF5_INCLUDE_DIR - The include dir for main *.h files
# HDF5_FORTRAN_INCLUDE_DIR - The include dir for fortran modules and headers
-# HDF5_VERSION_STRING - full version (e.g. 1.8.5)
-# HDF5_VERSION_MAJOR - major part of version (e.g. 1.8)
-# HDF5_VERSION_MINOR - minor part (e.g. 5)
+# HDF5_VERSION_STRING - full version (e.g. @HDF5_PACKAGE_VERSION@)
+# HDF5_VERSION_MAJOR - major part of version (e.g. @HDF5_PACKAGE_VERSION_MAJOR@)
+# HDF5_VERSION_MINOR - minor part (e.g. @HDF5_PACKAGE_VERSION_MINOR@)
#
# The following boolean vars will be defined
# HDF5_ENABLE_PARALLEL - 1 if HDF5 parallel supported
@@ -36,7 +36,7 @@ # hdf5_hl_cpp : High Level cpp interface library
#
# To aid in finding HDF5 as part of a subproject set
-# HDF5_ROOT_DIR_HINT to the location where hdf5-config.cmake lies
+# HDF5_ROOT_DIR_HINT to the location where @HDF5_PACKAGE@@HDF_PACKAGE_EXT@-config.cmake lies
INCLUDE (SelectLibraryConfigurations)
INCLUDE (FindPackageHandleStandardArgs)
@@ -63,6 +63,7 @@ FIND_PATH (HDF5_ROOT_DIR "@HDF5_PACKAGE@@HDF_PACKAGE_EXT@-config.cmake" HINTS ${_HDF5_HINTS}
PATHS ${_HDF5_PATHS}
PATH_SUFFIXES
+ cmake/@HDF5_PACKAGE@
lib/cmake/@HDF5_PACKAGE@
share/cmake/@HDF5_PACKAGE@
)
diff --git a/config/cmake/HDFMacros.cmake b/config/cmake/HDFMacros.cmake index 568b3ff..099b97f 100644 --- a/config/cmake/HDFMacros.cmake +++ b/config/cmake/HDFMacros.cmake @@ -34,18 +34,18 @@ MACRO (IDE_SOURCE_PROPERTIES SOURCE_PATH HEADERS SOURCES) ENDMACRO (IDE_SOURCE_PROPERTIES) #------------------------------------------------------------------------------- -MACRO (TARGET_NAMING target libtype) +MACRO (TARGET_NAMING libtarget libtype) IF (WIN32) IF (${libtype} MATCHES "SHARED") - SET_TARGET_PROPERTIES (${target} PROPERTIES OUTPUT_NAME "${target}dll") + SET_TARGET_PROPERTIES (${libtarget} PROPERTIES OUTPUT_NAME "${libtarget}dll") ENDIF (${libtype} MATCHES "SHARED") ENDIF (WIN32) ENDMACRO (TARGET_NAMING) #------------------------------------------------------------------------------- -MACRO (INSTALL_TARGET_PDB target targetdestination targetcomponent) +MACRO (INSTALL_TARGET_PDB libtarget targetdestination targetcomponent) IF (WIN32 AND MSVC) - GET_TARGET_PROPERTY (target_name ${target} RELWITHDEBINFO_OUTPUT_NAME) + GET_TARGET_PROPERTY (target_name ${libtarget} RELWITHDEBINFO_OUTPUT_NAME) INSTALL ( FILES ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE}/${CMAKE_IMPORT_LIBRARY_PREFIX}${target_name}.pdb @@ -58,10 +58,10 @@ MACRO (INSTALL_TARGET_PDB target targetdestination targetcomponent) ENDMACRO (INSTALL_TARGET_PDB) #------------------------------------------------------------------------------- -MACRO (INSTALL_PROGRAM_PDB target targetdestination targetcomponent) +MACRO (INSTALL_PROGRAM_PDB progtarget targetdestination targetcomponent) IF (WIN32 AND MSVC) - GET_TARGET_PROPERTY (target_name ${target} RELWITHDEBINFO_OUTPUT_NAME) - GET_TARGET_PROPERTY (target_prefix h5dump PREFIX) + GET_TARGET_PROPERTY (target_name ${progtarget} RELWITHDEBINFO_OUTPUT_NAME) + GET_TARGET_PROPERTY (target_prefix ${progtarget} PREFIX) INSTALL ( FILES ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE}/${target_prefix}${target_name}.pdb @@ -121,16 +121,16 @@ MACRO (HDF_SET_LIB_OPTIONS libtarget libname libtype) ENDMACRO (HDF_SET_LIB_OPTIONS) #------------------------------------------------------------------------------- -MACRO (TARGET_FORTRAN_WIN_PROPERTIES target addlinkflags) +MACRO (TARGET_FORTRAN_WIN_PROPERTIES forttarget addlinkflags) IF (WIN32 AND MSVC) IF (BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (${target} + SET_TARGET_PROPERTIES (${forttarget} PROPERTIES COMPILE_FLAGS "/dll" LINK_FLAGS "/SUBSYSTEM:CONSOLE ${addlinkflags}" ) ELSE (BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (${target} + SET_TARGET_PROPERTIES (${forttarget} PROPERTIES COMPILE_FLAGS "/MD" LINK_FLAGS "/SUBSYSTEM:CONSOLE ${addlinkflags}" diff --git a/config/cmake/hdf5-config.cmake.install.in b/config/cmake/hdf5-config.cmake.install.in index bc253e2..6b90496 100644 --- a/config/cmake/hdf5-config.cmake.install.in +++ b/config/cmake/hdf5-config.cmake.install.in @@ -4,7 +4,9 @@ GET_FILENAME_COMPONENT (SELF_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
GET_FILENAME_COMPONENT(_IMPORT_PREFIX "${SELF_DIR}" PATH)
GET_FILENAME_COMPONENT(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
-GET_FILENAME_COMPONENT(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+IF (NOT WIN32)
+ GET_FILENAME_COMPONENT(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+ENDIF (NOT WIN32)
#-----------------------------------------------------------------------------
# User Options
@@ -60,32 +62,12 @@ SET (HDF5_VERSION_MINOR @HDF5_VERSION_MINOR@) #-----------------------------------------------------------------------------
IF (NOT TARGET "@HDF5_PACKAGE@")
IF (HDF5_ENABLE_Z_LIB_SUPPORT AND HDF5_PACKAGE_EXTLIBS AND NOT TARGET "zlib")
- INCLUDE (${SELF_DIR}/../ZLIB/ZLIB@HDF_PACKAGE_EXT@-targets.cmake)
+ INCLUDE (${SELF_DIR}/../ZLIB/@ZLIB_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
ENDIF (HDF5_ENABLE_Z_LIB_SUPPORT AND HDF5_PACKAGE_EXTLIBS AND NOT TARGET "zlib")
IF (HDF5_ENABLE_SZIP_SUPPORT AND HDF5_PACKAGE_EXTLIBS AND NOT TARGET "szip")
- INCLUDE (${SELF_DIR}/../SZIP/SZIP@HDF_PACKAGE_EXT@-targets.cmake)
+ INCLUDE (${SELF_DIR}/../SZIP/@SZIP_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
ENDIF (HDF5_ENABLE_SZIP_SUPPORT AND HDF5_PACKAGE_EXTLIBS AND NOT TARGET "szip")
INCLUDE (${SELF_DIR}/@HDF5_PACKAGE@@HDF_PACKAGE_EXT@-targets.cmake)
SET (HDF5_LIBRARIES "@HDF5_LIBRARIES_TO_EXPORT@")
ENDIF (NOT TARGET "@HDF5_PACKAGE@")
-#-----------------------------------------------------------------------------
-# Unfinished
-#-----------------------------------------------------------------------------
-#
-# To be continued (maybe) ...
-#
-# XXX_INCLUDE_DIRS no, use one per library as in HDF5_FORTRAN_INCLUDE_DIR
-# XXX_LIBRARIES not needed - see hdf5-targets.cmake
-# XXX_DEFINITIONS Definitions to use when compiling code that uses XXX. This really shouldn't include options such as (-DHAS_JPEG) that a client source-code file uses to decide whether to #include <jpeg.h>
-# XXX_EXECUTABLE Where to find the XXX tool.
-# XXX_YYY_EXECUTABLE Where to find the YYY tool that comes with XXX.
-# XXX_LIBRARY_DIRS Optionally, the final set of library directories listed in one variable for use by client code. This should not be a cache entry.
-# XXX_ROOT_DIR Where to find the base directory of XXX.
-# XXX_VERSION_YY Expect Version YY if true. Make sure at most one of these is ever true.
-# XXX_WRAP_YY If False, do not try to use the relevent CMake wrapping command.
-# XXX_YY_FOUND If False, optional YY part of XXX sytem is not available.
-# XXX_FOUND Set to false, or undefined, if we haven't found, or don't want to use XXX.
-# XXX_RUNTIME_LIBRARY_DIRS Optionally, the runtime library search path for use when running an executable linked to shared libraries.
-# The list should be used by user code to create the PATH on windows or LD_LIBRARY_PATH on unix.
-# This should not be a cache entry.
diff --git a/config/commence.am b/config/commence.am index 3d098d9..4bc005e 100644 --- a/config/commence.am +++ b/config/commence.am @@ -87,13 +87,6 @@ TRACE=perl $(top_srcdir)/bin/trace F9XMODEXT=@F9XMODEXT@ F9XMODFLAG=@F9XMODFLAG@ -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF=/home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOMAKE=/home1/packages/automake/automake-1.9.6/bin/automake-1.9 -AUTOHEADER=/home1/packages/autoconf/autoconf-2.60/bin/autoheader -ACLOCAL=/home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal - # .chkexe files are used to mark tests that have run successfully. # .chklog files are output from those tests. # *.clog are from the MPE option. diff --git a/config/conclude.am b/config/conclude.am index 830b60c..1ba56fb 100644 --- a/config/conclude.am +++ b/config/conclude.am @@ -27,13 +27,18 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TESTS = $(TEST_PROG) $(TEST_SCRIPT) $(EXTRA_TEST) + +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -59,7 +64,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -83,7 +88,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -93,7 +98,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -188,7 +193,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -218,7 +223,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/config/examples.am b/config/examples.am index 9acd719..bf0708c 100644 --- a/config/examples.am +++ b/config/examples.am @@ -44,13 +44,12 @@ # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES=*.raw *.meta *.o CHECK_CLEANFILES+=*.h5 -CLEANFILES=$(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES=$(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # How to create EXAMPLEDIR if it doesn't already exist $(EXAMPLEDIR): diff --git a/config/lt_vers.am b/config/lt_vers.am index 4ad3051..04f29db 100644 --- a/config/lt_vers.am +++ b/config/lt_vers.am @@ -17,7 +17,7 @@ # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 ## If the API changes *at all*, increment LT_VERS_INTERFACE and @@ -1,14 +1,12 @@ #! /bin/sh -# From configure.in Id: configure.in 22525 2012-07-09 16:54:50Z lrknox . +# From configure.ac Id: configure.ac 22697 2012-08-19 14:35:47Z hdftest . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.68 for HDF5 1.9.124. +# Generated by GNU Autoconf 2.69 for HDF5 1.9.128. # # Report bugs to <help@hdfgroup.org>. # # -# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, -# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software -# Foundation, Inc. +# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc. # # # This configure script is free software; the Free Software Foundation @@ -137,6 +135,31 @@ export LANGUAGE # CDPATH. (unset CDPATH) >/dev/null 2>&1 && unset CDPATH +# Use a proper internal environment variable to ensure we don't fall + # into an infinite loop, continuously re-executing ourselves. + if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then + _as_can_reexec=no; export _as_can_reexec; + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed `exec'. +$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2 +as_fn_exit 255 + fi + # We don't want this to propagate to other subprocesses. + { _as_can_reexec=; unset _as_can_reexec;} if test "x$CONFIG_SHELL" = x; then as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then : emulate sh @@ -170,7 +193,8 @@ if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then : else exitcode=1; echo positional parameters were not saved. fi -test x\$exitcode = x0 || exit 1" +test x\$exitcode = x0 || exit 1 +test -x / || exit 1" as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" && @@ -223,21 +247,25 @@ IFS=$as_save_IFS if test "x$CONFIG_SHELL" != x; then : - # We cannot yet assume a decent shell, so we have to provide a - # neutralization value for shells without unset; and this also - # works around shells that cannot unset nonexistent variables. - # Preserve -v and -x to the replacement shell. - BASH_ENV=/dev/null - ENV=/dev/null - (unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV - export CONFIG_SHELL - case $- in # (((( - *v*x* | *x*v* ) as_opts=-vx ;; - *v* ) as_opts=-v ;; - *x* ) as_opts=-x ;; - * ) as_opts= ;; - esac - exec "$CONFIG_SHELL" $as_opts "$as_myself" ${1+"$@"} + export CONFIG_SHELL + # We cannot yet assume a decent shell, so we have to provide a +# neutralization value for shells without unset; and this also +# works around shells that cannot unset nonexistent variables. +# Preserve -v and -x to the replacement shell. +BASH_ENV=/dev/null +ENV=/dev/null +(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV +case $- in # (((( + *v*x* | *x*v* ) as_opts=-vx ;; + *v* ) as_opts=-v ;; + *x* ) as_opts=-x ;; + * ) as_opts= ;; +esac +exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"} +# Admittedly, this is quite paranoid, since all the known shells bail +# out after a failed `exec'. +$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2 +exit 255 fi if test x$as_have_required = xno; then : @@ -340,6 +368,14 @@ $as_echo X"$as_dir" | } # as_fn_mkdir_p + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p # as_fn_append VAR VALUE # ---------------------- # Append the text in VALUE to the end of the definition contained in VAR. Take @@ -461,6 +497,10 @@ as_cr_alnum=$as_cr_Letters$as_cr_digits chmod +x "$as_me.lineno" || { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; } + # If we had to re-execute with $CONFIG_SHELL, we're ensured to have + # already done that, so ensure we don't try to do so again and fall + # in an infinite loop. This has already happened in practice. + _as_can_reexec=no; export _as_can_reexec # Don't try to exec as it changes $[0], causing all sort of problems # (the dirname of $[0] is not the place where we might find the # original and so on. Autoconf is especially sensitive to this). @@ -495,16 +535,16 @@ if (echo >conf$$.file) 2>/dev/null; then # ... but there are two gotchas: # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail. # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable. - # In both cases, we have to default to `cp -p'. + # In both cases, we have to default to `cp -pR'. ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || - as_ln_s='cp -p' + as_ln_s='cp -pR' elif ln conf$$.file conf$$ 2>/dev/null; then as_ln_s=ln else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file rmdir conf$$.dir 2>/dev/null @@ -516,28 +556,8 @@ else as_mkdir_p=false fi -if test -x / >/dev/null 2>&1; then - as_test_x='test -x' -else - if ls -dL / >/dev/null 2>&1; then - as_ls_L_option=L - else - as_ls_L_option= - fi - as_test_x=' - eval sh -c '\'' - if test -d "$1"; then - test -d "$1/."; - else - case $1 in #( - -*)set "./$1";; - esac; - case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #(( - ???[sx]*):;;*)false;;esac;fi - '\'' sh - ' -fi -as_executable_p=$as_test_x +as_test_x='test -x' +as_executable_p=as_fn_executable_p # Sed expression to map a string onto a valid CPP name. as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'" @@ -571,8 +591,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.9.124' -PACKAGE_STRING='HDF5 1.9.124' +PACKAGE_VERSION='1.9.128' +PACKAGE_STRING='HDF5 1.9.128' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_URL='' @@ -738,6 +758,7 @@ HDF5_INTERFACES am__fastdepCC_FALSE am__fastdepCC_TRUE CCDEPMODE +am__nodep AMDEPBACKSLASH AMDEP_FALSE AMDEP_TRUE @@ -795,6 +816,8 @@ MAINTAINER_MODE_FALSE MAINTAINER_MODE_TRUE AM_BACKSLASH AM_DEFAULT_VERBOSITY +AM_DEFAULT_V +AM_V am__untar am__tar AMTAR @@ -1376,8 +1399,6 @@ target=$target_alias if test "x$host_alias" != x; then if test "x$build_alias" = x; then cross_compiling=maybe - $as_echo "$as_me: WARNING: if you wanted to set the --build type, don't use --host. - If a cross compiler is detected then cross compile mode will be used" >&2 elif test "x$build_alias" != "x$host_alias"; then cross_compiling=yes fi @@ -1463,7 +1484,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.9.124 to adapt to many kinds of systems. +\`configure' configures HDF5 1.9.128 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1533,7 +1554,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.9.124:";; + short | recursive ) echo "Configuration of HDF5 1.9.128:";; esac cat <<\_ACEOF @@ -1541,12 +1562,15 @@ Optional Features: --disable-option-checking ignore unrecognized --enable/--with options --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no) --enable-FEATURE[=ARG] include FEATURE [ARG=yes] - --enable-silent-rules less verbose build output (undo: `make V=1') - --disable-silent-rules verbose build output (undo: `make V=0') - --enable-maintainer-mode enable make rules and dependencies not useful - (and sometimes confusing) to the casual installer - --disable-dependency-tracking speeds up one-time build - --enable-dependency-tracking do not reject slow dependency extractors + --enable-silent-rules less verbose build output (undo: "make V=1") + --disable-silent-rules verbose build output (undo: "make V=0") + --enable-maintainer-mode + enable make rules and dependencies not useful (and + sometimes confusing) to the casual installer + --enable-dependency-tracking + do not reject slow dependency extractors + --disable-dependency-tracking + speeds up one-time build --enable-unsupported Allow unsupported combinations of configure options --enable-fortran Compile the Fortran 77/90/95 interface [default=no] --enable-fortran2003 Compile the Fortran 2003 interface, must also @@ -1618,7 +1642,7 @@ Optional Features: Optional Packages: --with-PACKAGE[=ARG] use PACKAGE [ARG=yes] --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no) - --with-pic try to use only PIC/non-PIC objects [default=use + --with-pic[=PKGS] try to use only PIC/non-PIC objects [default=use both] --with-gnu-ld assume the C compiler uses GNU ld [default=no] --with-sysroot=DIR Search for dependent libraries within DIR @@ -1726,10 +1750,10 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.9.124 -generated by GNU Autoconf 2.68 +HDF5 configure 1.9.128 +generated by GNU Autoconf 2.69 -Copyright (C) 2010 Free Software Foundation, Inc. +Copyright (C) 2012 Free Software Foundation, Inc. This configure script is free software; the Free Software Foundation gives unlimited permission to copy, distribute and modify it. _ACEOF @@ -1843,7 +1867,7 @@ $as_echo "$ac_try_echo"; } >&5 test ! -s conftest.err } && test -s conftest$ac_exeext && { test "$cross_compiling" = yes || - $as_test_x conftest$ac_exeext + test -x conftest$ac_exeext }; then : ac_retval=0 else @@ -2233,7 +2257,7 @@ $as_echo "$ac_try_echo"; } >&5 test ! -s conftest.err } && test -s conftest$ac_exeext && { test "$cross_compiling" = yes || - $as_test_x conftest$ac_exeext + test -x conftest$ac_exeext }; then : ac_retval=0 else @@ -2279,7 +2303,7 @@ $as_echo "$ac_try_echo"; } >&5 test ! -s conftest.err } && test -s conftest$ac_exeext && { test "$cross_compiling" = yes || - $as_test_x conftest$ac_exeext + test -x conftest$ac_exeext }; then : ac_retval=0 else @@ -2484,7 +2508,8 @@ int main () { static int test_array [1 - 2 * !(($2) >= 0)]; -test_array [0] = 0 +test_array [0] = 0; +return test_array [0]; ; return 0; @@ -2508,7 +2533,8 @@ int main () { static int test_array [1 - 2 * !(($2) <= $ac_mid)]; -test_array [0] = 0 +test_array [0] = 0; +return test_array [0]; ; return 0; @@ -2542,7 +2568,8 @@ int main () { static int test_array [1 - 2 * !(($2) < 0)]; -test_array [0] = 0 +test_array [0] = 0; +return test_array [0]; ; return 0; @@ -2566,7 +2593,8 @@ int main () { static int test_array [1 - 2 * !(($2) >= $ac_mid)]; -test_array [0] = 0 +test_array [0] = 0; +return test_array [0]; ; return 0; @@ -2608,7 +2636,8 @@ int main () { static int test_array [1 - 2 * !(($2) <= $ac_mid)]; -test_array [0] = 0 +test_array [0] = 0; +return test_array [0]; ; return 0; @@ -2815,8 +2844,8 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.9.124, which was -generated by GNU Autoconf 2.68. Invocation command line was +It was created by HDF5 $as_me 1.9.128, which was +generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -3198,7 +3227,7 @@ ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var. -am__api_version='1.11' +am__api_version='1.12' # Find a good install program. We prefer a C program (faster), # so one script is as good as another. But avoid the broken or @@ -3237,7 +3266,7 @@ case $as_dir/ in #(( # by default. for ac_prog in ginstall scoinst install; do for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then if test $ac_prog = install && grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then # AIX install. It has an incompatible calling convention. @@ -3295,9 +3324,6 @@ test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644' { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether build environment is sane" >&5 $as_echo_n "checking whether build environment is sane... " >&6; } -# Just in case -sleep 1 -echo timestamp > conftest.file # Reject unsafe characters in $srcdir or the absolute working directory # name. Accept space and tab only in the latter. am_lf=' @@ -3308,32 +3334,40 @@ case `pwd` in esac case $srcdir in *[\\\"\#\$\&\'\`$am_lf\ \ ]*) - as_fn_error $? "unsafe srcdir value: \`$srcdir'" "$LINENO" 5;; + as_fn_error $? "unsafe srcdir value: '$srcdir'" "$LINENO" 5;; esac -# Do `set' in a subshell so we don't clobber the current shell's +# Do 'set' in a subshell so we don't clobber the current shell's # arguments. Must try -L first in case configure is actually a # symlink; some systems play weird games with the mod time of symlinks # (eg FreeBSD returns the mod time of the symlink's containing # directory). if ( - set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null` - if test "$*" = "X"; then - # -L didn't work. - set X `ls -t "$srcdir/configure" conftest.file` - fi - rm -f conftest.file - if test "$*" != "X $srcdir/configure conftest.file" \ - && test "$*" != "X conftest.file $srcdir/configure"; then - - # If neither matched, then we have a broken ls. This can happen - # if, for instance, CONFIG_SHELL is bash and it inherits a - # broken ls alias from the environment. This has actually - # happened. Such a system could not be considered "sane". - as_fn_error $? "ls -t appears to fail. Make sure there is not a broken -alias in your environment" "$LINENO" 5 - fi - + am_has_slept=no + for am_try in 1 2; do + echo "timestamp, slept: $am_has_slept" > conftest.file + set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null` + if test "$*" = "X"; then + # -L didn't work. + set X `ls -t "$srcdir/configure" conftest.file` + fi + if test "$*" != "X $srcdir/configure conftest.file" \ + && test "$*" != "X conftest.file $srcdir/configure"; then + + # If neither matched, then we have a broken ls. This can happen + # if, for instance, CONFIG_SHELL is bash and it inherits a + # broken ls alias from the environment. This has actually + # happened. Such a system could not be considered "sane". + as_fn_error $? "ls -t appears to fail. Make sure there is not a broken + alias in your environment" "$LINENO" 5 + fi + if test "$2" = conftest.file || test $am_try -eq 2; then + break + fi + # Just in case. + sleep 1 + am_has_slept=yes + done test "$2" = conftest.file ) then @@ -3345,6 +3379,16 @@ Check your system clock" "$LINENO" 5 fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 $as_echo "yes" >&6; } +# If we didn't sleep, we still need to ensure time stamps of config.status and +# generated files are strictly newer. +am_sleep_pid= +if grep 'slept: no' conftest.file >/dev/null 2>&1; then + ( sleep 1 ) & + am_sleep_pid=$! +fi + +rm -f conftest.file + test "$program_prefix" != NONE && program_transform_name="s&^&$program_prefix&;$program_transform_name" # Use a double $ so make ignores it. @@ -3371,8 +3415,8 @@ if eval "$MISSING --run true"; then am_missing_run="$MISSING --run " else am_missing_run= - { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`missing' script is too old or missing" >&5 -$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;} + { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: 'missing' script is too old or missing" >&5 +$as_echo "$as_me: WARNING: 'missing' script is too old or missing" >&2;} fi if test x"${install_sh}" != xset; then @@ -3384,10 +3428,10 @@ if test x"${install_sh}" != xset; then esac fi -# Installed binaries are usually stripped using `strip' when the user -# run `make install-strip'. However `strip' might not be the right +# Installed binaries are usually stripped using 'strip' when the user +# run "make install-strip". However 'strip' might not be the right # tool to use in cross-compilation environments, therefore Automake -# will honor the `STRIP' environment variable to overrule this program. +# will honor the 'STRIP' environment variable to overrule this program. if test "$cross_compiling" != no; then if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. @@ -3406,7 +3450,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_STRIP="${ac_tool_prefix}strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -3446,7 +3490,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_STRIP="strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -3497,7 +3541,7 @@ do test -z "$as_dir" && as_dir=. for ac_prog in mkdir gmkdir; do for ac_exec_ext in '' $ac_executable_extensions; do - { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue + as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext" || continue case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( 'mkdir (GNU coreutils) '* | \ 'mkdir (coreutils) '* | \ @@ -3526,12 +3570,6 @@ fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MKDIR_P" >&5 $as_echo "$MKDIR_P" >&6; } -mkdir_p="$MKDIR_P" -case $mkdir_p in - [\\/$]* | ?:[\\/]*) ;; - */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; -esac - for ac_prog in gawk mawk nawk awk do # Extract the first word of "$ac_prog", so it can be a program name with args. @@ -3550,7 +3588,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AWK="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -3636,7 +3674,7 @@ fi # Define the identity of the package. PACKAGE='hdf5' - VERSION='1.9.124' + VERSION='1.9.128' cat >>confdefs.h <<_ACEOF @@ -3664,13 +3702,19 @@ AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"} MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"} +# For better backward compatibility. To be removed once Automake 1.9.x +# dies out for good. For more background, see: +# <http://lists.gnu.org/archive/html/automake/2012-07/msg00001.html> +# <http://lists.gnu.org/archive/html/automake/2012-07/msg00014.html> +mkdir_p='$(MKDIR_P)' + # We need awk for the "check" target. The system "awk" is bad on # some platforms. -# Always define AMTAR for backward compatibility. +# Always define AMTAR for backward compatibility. Yes, it's still used +# in the wild :-( We should find a proper way to deprecate it ... +AMTAR='$${TAR-tar}' -AMTAR=${AMTAR-"${am_missing_run}tar"} - -am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' +am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' @@ -3681,11 +3725,38 @@ if test "${enable_silent_rules+set}" = set; then : enableval=$enable_silent_rules; fi -case $enable_silent_rules in -yes) AM_DEFAULT_VERBOSITY=0;; -no) AM_DEFAULT_VERBOSITY=1;; -*) AM_DEFAULT_VERBOSITY=0;; +case $enable_silent_rules in # ((( + yes) AM_DEFAULT_VERBOSITY=0;; + no) AM_DEFAULT_VERBOSITY=1;; + *) AM_DEFAULT_VERBOSITY=0;; esac +am_make=${MAKE-make} +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $am_make supports nested variables" >&5 +$as_echo_n "checking whether $am_make supports nested variables... " >&6; } +if ${am_cv_make_support_nested_variables+:} false; then : + $as_echo_n "(cached) " >&6 +else + if $as_echo 'TRUE=$(BAR$(V)) +BAR0=false +BAR1=true +V=1 +am__doit: + @$(TRUE) +.PHONY: am__doit' | $am_make -f - >/dev/null 2>&1; then + am_cv_make_support_nested_variables=yes +else + am_cv_make_support_nested_variables=no +fi +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_make_support_nested_variables" >&5 +$as_echo "$am_cv_make_support_nested_variables" >&6; } +if test $am_cv_make_support_nested_variables = yes; then + AM_V='$(V)' + AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' +else + AM_V=$AM_DEFAULT_VERBOSITY + AM_DEFAULT_V=$AM_DEFAULT_VERBOSITY +fi AM_BACKSLASH='\' @@ -4006,7 +4077,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_CC="${ac_tool_prefix}gcc" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -4046,7 +4117,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_CC="gcc" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -4099,7 +4170,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_CC="${ac_tool_prefix}cc" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -4140,7 +4211,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then ac_prog_rejected=yes continue @@ -4198,7 +4269,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_CC="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -4242,7 +4313,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_CC="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -4688,8 +4759,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ #include <stdarg.h> #include <stdio.h> -#include <sys/types.h> -#include <sys/stat.h> +struct stat; /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ struct buf { int x; }; FILE * (*rcsopen) (struct buf *, struct stat *, int); @@ -4792,7 +4862,7 @@ am__quote= _am_result=none # First try GNU make style include. echo "include confinc" > confmf -# Ignore all kinds of additional output from `make'. +# Ignore all kinds of additional output from 'make'. case `$am_make -s -f confmf 2> /dev/null` in #( *the\ am__doit\ target*) am__include=include @@ -4825,6 +4895,7 @@ fi if test "x$enable_dependency_tracking" != xno; then am_depcomp="$ac_aux_dir/depcomp" AMDEPBACKSLASH='\' + am__nodep='_no' fi if test "x$enable_dependency_tracking" != xno; then AMDEP_TRUE= @@ -4847,8 +4918,9 @@ else # We make a subdir and do the tests there. Otherwise we can end up # making bogus files that we don't know about and never remove. For # instance it was reported that on HP-UX the gcc test will end up - # making a dummy file named `D' -- because `-MD' means `put the output - # in D'. + # making a dummy file named 'D' -- because '-MD' means "put the output + # in D". + rm -rf conftest.dir mkdir conftest.dir # Copy depcomp to subdir because otherwise we won't find it if we're # using a relative directory. @@ -4882,16 +4954,16 @@ else : > sub/conftest.c for i in 1 2 3 4 5 6; do echo '#include "conftst'$i'.h"' >> sub/conftest.c - # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with - # Solaris 8's {/usr,}/bin/sh. - touch sub/conftst$i.h + # Using ": > sub/conftst$i.h" creates only sub/conftst1.h with + # Solaris 10 /bin/sh. + echo '/* dummy */' > sub/conftst$i.h done echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf - # We check with `-c' and `-o' for the sake of the "dashmstdout" + # We check with '-c' and '-o' for the sake of the "dashmstdout" # mode. It turns out that the SunPro C++ compiler does not properly - # handle `-M -o', and we need to detect this. Also, some Intel - # versions had trouble with output in subdirs + # handle '-M -o', and we need to detect this. Also, some Intel + # versions had trouble with output in subdirs. am__obj=sub/conftest.${OBJEXT-o} am__minus_obj="-o $am__obj" case $depmode in @@ -4900,16 +4972,16 @@ else test "$am__universal" = false || continue ;; nosideeffect) - # after this tag, mechanisms are not by side-effect, so they'll - # only be used when explicitly requested + # After this tag, mechanisms are not by side-effect, so they'll + # only be used when explicitly requested. if test "x$enable_dependency_tracking" = xyes; then continue else break fi ;; - msvisualcpp | msvcmsys) - # This compiler won't grok `-c -o', but also, the minuso test has + msvc7 | msvc7msys | msvisualcpp | msvcmsys) + # This compiler won't grok '-c -o', but also, the minuso test has # not run yet. These depmodes are late enough in the game, and # so weak that their functioning should not be impacted. am__obj=conftest.${OBJEXT-o} @@ -5048,7 +5120,7 @@ ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_fc_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -5066,7 +5138,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_FC="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -5092,7 +5164,7 @@ fi fi if test -z "$FC"; then ac_ct_FC=$FC - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn nagfor xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -5110,7 +5182,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_FC="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -5243,6 +5315,11 @@ else fi fi +if test $ac_compiler_gnu = yes; then + GFC=yes +else + GFC= +fi ac_ext=${ac_fc_srcext-f} ac_compile='$FC -c $FCFLAGS $ac_fcflags_srcext conftest.$ac_ext >&5' ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' @@ -5262,7 +5339,11 @@ else ac_fcflags_srcext_save=$ac_fcflags_srcext ac_fcflags_srcext= ac_cv_fc_srcext_f90=unknown -for ac_flag in none -qsuffix=f=f90 -Tf; do +case $ac_ext in #( + [fF]77) ac_try=f77;; #( + *) ac_try=f95;; +esac +for ac_flag in none -qsuffix=f=f90 -Tf "-x $ac_try"; do test "x$ac_flag" != xnone && ac_fcflags_srcext="$ac_flag" cat > conftest.$ac_ext <<_ACEOF program main @@ -5327,7 +5408,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_FC="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -5371,7 +5452,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_FC="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -5504,6 +5585,11 @@ else fi fi +if test $ac_compiler_gnu = yes; then + GFC=yes +else + GFC= +fi ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' @@ -5664,9 +5750,16 @@ ac_fc_v_output="`echo $ac_fc_v_output | # that detects unbalanced quotes in FLIBS should be implemented # and (ugh) tested at some point. case $ac_fc_v_output in - # If we are using xlf then replace all the commas with spaces. + # With xlf replace commas with spaces, + # and remove "-link" and closing parenthesis. *xlfentry*) - ac_fc_v_output=`echo $ac_fc_v_output | sed 's/,/ /g'` ;; + ac_fc_v_output=`echo $ac_fc_v_output | + sed ' + s/,/ /g + s/ -link / /g + s/) *$// + ' + ` ;; # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted # $LIBS confuse us, and the libraries appear later in the output anyway). @@ -5682,6 +5775,16 @@ case $ac_fc_v_output in s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + # If we are using fort77 (the f2c wrapper) then filter output and delete quotes. + *fort77*f2c*gcc*) + ac_fc_v_output=`echo "$ac_fc_v_output" | sed -n ' + /:[ ]\+Running[ ]\{1,\}"gcc"/{ + /"-c"/d + /[.]c"*/d + s/^.*"gcc"/"gcc"/ + s/"//gp + }'` ;; + # If we are using Cray Fortran then delete quotes. *cft90*) ac_fc_v_output=`echo $ac_fc_v_output | sed 's/"//g'` ;; @@ -5755,9 +5858,16 @@ ac_fc_v_output="`echo $ac_fc_v_output | # that detects unbalanced quotes in FLIBS should be implemented # and (ugh) tested at some point. case $ac_fc_v_output in - # If we are using xlf then replace all the commas with spaces. + # With xlf replace commas with spaces, + # and remove "-link" and closing parenthesis. *xlfentry*) - ac_fc_v_output=`echo $ac_fc_v_output | sed 's/,/ /g'` ;; + ac_fc_v_output=`echo $ac_fc_v_output | + sed ' + s/,/ /g + s/ -link / /g + s/) *$// + ' + ` ;; # With Intel ifc, ignore the quoted -mGLOB_options_string stuff (quoted # $LIBS confuse us, and the libraries appear later in the output anyway). @@ -5773,6 +5883,16 @@ case $ac_fc_v_output in s/-ignore *'[^']*'/ /g; s/-ignore *\"[^\"]*\"/ /g s/-def *'[^']*'/ /g; s/-def *\"[^\"]*\"/ /g"` ;; + # If we are using fort77 (the f2c wrapper) then filter output and delete quotes. + *fort77*f2c*gcc*) + ac_fc_v_output=`echo "$ac_fc_v_output" | sed -n ' + /:[ ]\+Running[ ]\{1,\}"gcc"/{ + /"-c"/d + /[.]c"*/d + s/^.*"gcc"/"gcc"/ + s/"//gp + }'` ;; + # If we are using Cray Fortran then delete quotes. *cft90*) ac_fc_v_output=`echo $ac_fc_v_output | sed 's/"//g'` ;; @@ -5831,7 +5951,11 @@ fi |-LANG:=* | -LIST:* | -LNO:* | -link) ;; -lkernel32) - test x"$CYGWIN" != xyes && ac_cv_fc_libs="$ac_cv_fc_libs $ac_arg" + case $host_os in + *cygwin*) ;; + *) ac_cv_fc_libs="$ac_cv_fc_libs $ac_arg" + ;; + esac ;; -[LRuYz]) # These flags, when seen by themselves, take an argument. @@ -6435,7 +6559,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_CXX="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -6479,7 +6603,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_CXX="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -6707,8 +6831,9 @@ else # We make a subdir and do the tests there. Otherwise we can end up # making bogus files that we don't know about and never remove. For # instance it was reported that on HP-UX the gcc test will end up - # making a dummy file named `D' -- because `-MD' means `put the output - # in D'. + # making a dummy file named 'D' -- because '-MD' means "put the output + # in D". + rm -rf conftest.dir mkdir conftest.dir # Copy depcomp to subdir because otherwise we won't find it if we're # using a relative directory. @@ -6742,16 +6867,16 @@ else : > sub/conftest.c for i in 1 2 3 4 5 6; do echo '#include "conftst'$i'.h"' >> sub/conftest.c - # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with - # Solaris 8's {/usr,}/bin/sh. - touch sub/conftst$i.h + # Using ": > sub/conftst$i.h" creates only sub/conftst1.h with + # Solaris 10 /bin/sh. + echo '/* dummy */' > sub/conftst$i.h done echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf - # We check with `-c' and `-o' for the sake of the "dashmstdout" + # We check with '-c' and '-o' for the sake of the "dashmstdout" # mode. It turns out that the SunPro C++ compiler does not properly - # handle `-M -o', and we need to detect this. Also, some Intel - # versions had trouble with output in subdirs + # handle '-M -o', and we need to detect this. Also, some Intel + # versions had trouble with output in subdirs. am__obj=sub/conftest.${OBJEXT-o} am__minus_obj="-o $am__obj" case $depmode in @@ -6760,16 +6885,16 @@ else test "$am__universal" = false || continue ;; nosideeffect) - # after this tag, mechanisms are not by side-effect, so they'll - # only be used when explicitly requested + # After this tag, mechanisms are not by side-effect, so they'll + # only be used when explicitly requested. if test "x$enable_dependency_tracking" = xyes; then continue else break fi ;; - msvisualcpp | msvcmsys) - # This compiler won't grok `-c -o', but also, the minuso test has + msvc7 | msvc7msys | msvisualcpp | msvcmsys) + # This compiler won't grok '-c -o', but also, the minuso test has # not run yet. These depmodes are late enough in the game, and # so weak that their functioning should not be impacted. am__obj=conftest.${OBJEXT-o} @@ -7231,7 +7356,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_PERL="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7278,7 +7403,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AR="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7361,7 +7486,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_path_TR="$as_dir/$ac_word$ac_exec_ext" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7655,7 +7780,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AS="${ac_tool_prefix}as" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7695,7 +7820,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_AS="as" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7747,7 +7872,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DLLTOOL="${ac_tool_prefix}dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7787,7 +7912,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DLLTOOL="dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7839,7 +7964,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7879,7 +8004,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OBJDUMP="objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -7950,8 +8075,8 @@ esac -macro_version='2.4' -macro_revision='1.3293' +macro_version='2.4.2' +macro_revision='1.3337' @@ -8058,7 +8183,7 @@ do for ac_prog in sed gsed; do for ac_exec_ext in '' $ac_executable_extensions; do ac_path_SED="$as_dir/$ac_prog$ac_exec_ext" - { test -f "$ac_path_SED" && $as_test_x "$ac_path_SED"; } || continue + as_fn_executable_p "$ac_path_SED" || continue # Check for GNU ac_path_SED and select it if it is found. # Check for GNU $ac_path_SED case `"$ac_path_SED" --version 2>&1` in @@ -8134,7 +8259,7 @@ do for ac_prog in grep ggrep; do for ac_exec_ext in '' $ac_executable_extensions; do ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext" - { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue + as_fn_executable_p "$ac_path_GREP" || continue # Check for GNU ac_path_GREP and select it if it is found. # Check for GNU $ac_path_GREP case `"$ac_path_GREP" --version 2>&1` in @@ -8200,7 +8325,7 @@ do for ac_prog in egrep; do for ac_exec_ext in '' $ac_executable_extensions; do ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext" - { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue + as_fn_executable_p "$ac_path_EGREP" || continue # Check for GNU ac_path_EGREP and select it if it is found. # Check for GNU $ac_path_EGREP case `"$ac_path_EGREP" --version 2>&1` in @@ -8267,7 +8392,7 @@ do for ac_prog in fgrep; do for ac_exec_ext in '' $ac_executable_extensions; do ac_path_FGREP="$as_dir/$ac_prog$ac_exec_ext" - { test -f "$ac_path_FGREP" && $as_test_x "$ac_path_FGREP"; } || continue + as_fn_executable_p "$ac_path_FGREP" || continue # Check for GNU ac_path_FGREP and select it if it is found. # Check for GNU $ac_path_FGREP case `"$ac_path_FGREP" --version 2>&1` in @@ -8523,7 +8648,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DUMPBIN="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -8567,7 +8692,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DUMPBIN="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -8725,6 +8850,11 @@ else lt_cv_sys_max_cmd_len=196608 ;; + os2*) + # The test takes a long time on OS/2. + lt_cv_sys_max_cmd_len=8192 + ;; + osf*) # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not @@ -8764,7 +8894,7 @@ else # If test is not a shell built-in, we'll probably end up computing a # maximum length that is only half of the actual maximum length, but # we can't tell. - while { test "X"`func_fallback_echo "$teststring$teststring" 2>/dev/null` \ + while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \ = "X$teststring$teststring"; } >/dev/null 2>&1 && test $i != 17 # 1/2 MB should be enough do @@ -8986,7 +9116,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9026,7 +9156,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OBJDUMP="objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9190,7 +9320,7 @@ irix5* | irix6* | nonstopux*) lt_cv_deplibs_check_method=pass_all ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) lt_cv_deplibs_check_method=pass_all ;; @@ -9329,7 +9459,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DLLTOOL="${ac_tool_prefix}dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9369,7 +9499,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DLLTOOL="dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9469,7 +9599,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_AR="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9513,7 +9643,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_AR="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9646,7 +9776,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_STRIP="${ac_tool_prefix}strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9686,7 +9816,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_STRIP="strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9745,7 +9875,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9785,7 +9915,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_RANLIB="ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -9835,13 +9965,13 @@ old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$tool_oldlib" ;; *) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$tool_oldlib" ;; esac - old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib" + old_archive_cmds="$old_archive_cmds~\$RANLIB \$tool_oldlib" fi case $host_os in @@ -9988,6 +10118,7 @@ for ac_symprfx in "" "_"; do # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK '"\ " {last_section=section; section=\$ 3};"\ +" /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ @@ -10384,7 +10515,7 @@ $as_echo "$lt_cv_cc_needs_belf" >&6; } CFLAGS="$SAVE_CFLAGS" fi ;; -sparc*-*solaris*) +*-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 @@ -10395,7 +10526,20 @@ sparc*-*solaris*) case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in - yes*) LD="${LD-ld} -m elf64_sparc" ;; + yes*) + case $host in + i?86-*-solaris*) + LD="${LD-ld} -m elf_x86_64" + ;; + sparc*-*-solaris*) + LD="${LD-ld} -m elf64_sparc" + ;; + esac + # GNU ld 2.21 introduced _sol2 emulations. Use them if available. + if ${LD-ld} -V | grep _sol2 >/dev/null 2>&1; then + LD="${LD-ld}_sol2" + fi + ;; *) if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then LD="${LD-ld} -64" @@ -10428,7 +10572,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_MANIFEST_TOOL="${ac_tool_prefix}mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10468,7 +10612,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_MANIFEST_TOOL="mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10548,7 +10692,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10588,7 +10732,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_DSYMUTIL="dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10640,7 +10784,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10680,7 +10824,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_NMEDIT="nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10732,7 +10876,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_LIPO="${ac_tool_prefix}lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10772,7 +10916,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_LIPO="lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10824,7 +10968,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OTOOL="${ac_tool_prefix}otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10864,7 +11008,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OTOOL="otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10916,7 +11060,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -10956,7 +11100,7 @@ do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do - if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then + if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then ac_cv_prog_ac_ct_OTOOL64="otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 @@ -11035,7 +11179,13 @@ else $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err _lt_result=$? - if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then + # If there is a non-empty error log, and "single_module" + # appears in it, assume the flag caused a linker warning + if test -s conftest.err && $GREP single_module conftest.err; then + cat conftest.err >&5 + # Otherwise, if the output was created with a 0 exit code from + # the compiler, it worked. + elif test -f libconftest.dylib && test $_lt_result -eq 0; then lt_cv_apple_cc_single_mod=yes else cat conftest.err >&5 @@ -11046,6 +11196,7 @@ else fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_apple_cc_single_mod" >&5 $as_echo "$lt_cv_apple_cc_single_mod" >&6; } + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -exported_symbols_list linker flag" >&5 $as_echo_n "checking for -exported_symbols_list linker flag... " >&6; } if ${lt_cv_ld_exported_symbols_list+:} false; then : @@ -11086,6 +11237,7 @@ rm -f core conftest.err conftest.$ac_objext \ fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ld_exported_symbols_list" >&5 $as_echo "$lt_cv_ld_exported_symbols_list" >&6; } + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -force_load linker flag" >&5 $as_echo_n "checking for -force_load linker flag... " >&6; } if ${lt_cv_ld_force_load+:} false; then : @@ -11107,7 +11259,9 @@ _LT_EOF echo "$LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a" >&5 $LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a 2>conftest.err _lt_result=$? - if test -f conftest && test ! -s conftest.err && test $_lt_result = 0 && $GREP forced_load conftest 2>&1 >/dev/null; then + if test -s conftest.err && $GREP force_load conftest.err; then + cat conftest.err >&5 + elif test -f conftest && test $_lt_result -eq 0 && $GREP forced_load conftest >/dev/null 2>&1 ; then lt_cv_ld_force_load=yes else cat conftest.err >&5 @@ -11526,7 +11680,22 @@ fi # Check whether --with-pic was given. if test "${with_pic+set}" = set; then : - withval=$with_pic; pic_mode="$withval" + withval=$with_pic; lt_p=${PACKAGE-default} + case $withval in + yes|no) pic_mode=$withval ;; + *) + pic_mode=default + # Look at the argument we got. We use all the common list separators. + lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," + for lt_pkg in $withval; do + IFS="$lt_save_ifs" + if test "X$lt_pkg" = "X$lt_p"; then + pic_mode=yes + fi + done + IFS="$lt_save_ifs" + ;; + esac else pic_mode=default fi @@ -11604,6 +11773,10 @@ LIBTOOL='$(SHELL) $(top_builddir)/libtool' + + + + test -z "$LN_S" && LN_S="ln -s" @@ -12059,7 +12232,9 @@ lt_prog_compiler_static= case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 lt_prog_compiler_wl='-Xlinker ' - lt_prog_compiler_pic='-Xcompiler -fPIC' + if test -n "$lt_prog_compiler_pic"; then + lt_prog_compiler_pic="-Xcompiler $lt_prog_compiler_pic" + fi ;; esac else @@ -12150,18 +12325,33 @@ lt_prog_compiler_static= ;; *) case `$CC -V 2>&1 | sed 5q` in - *Sun\ F* | *Sun*Fortran*) + *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [1-7].* | *Sun*Fortran*\ 8.[0-3]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker lt_prog_compiler_pic='-KPIC' lt_prog_compiler_static='-Bstatic' lt_prog_compiler_wl='' ;; + *Sun\ F* | *Sun*Fortran*) + lt_prog_compiler_pic='-KPIC' + lt_prog_compiler_static='-Bstatic' + lt_prog_compiler_wl='-Qoption ld ' + ;; *Sun\ C*) # Sun C 5.9 lt_prog_compiler_pic='-KPIC' lt_prog_compiler_static='-Bstatic' lt_prog_compiler_wl='-Wl,' ;; + *Intel*\ [CF]*Compiler*) + lt_prog_compiler_wl='-Wl,' + lt_prog_compiler_pic='-fPIC' + lt_prog_compiler_static='-static' + ;; + *Portland\ Group*) + lt_prog_compiler_wl='-Wl,' + lt_prog_compiler_pic='-fpic' + lt_prog_compiler_static='-Bstatic' + ;; esac ;; esac @@ -12523,7 +12713,6 @@ $as_echo_n "checking whether the $compiler linker ($LD) supports shared librarie hardcode_direct=no hardcode_direct_absolute=no hardcode_libdir_flag_spec= - hardcode_libdir_flag_spec_ld= hardcode_libdir_separator= hardcode_minus_L=no hardcode_shlibpath_var=unsupported @@ -12773,8 +12962,7 @@ _LT_EOF xlf* | bgf* | bgxlf* | mpixlf*) # IBM XL Fortran 10.1 on PPC cannot create shared libs itself whole_archive_flag_spec='--whole-archive$convenience --no-whole-archive' - hardcode_libdir_flag_spec= - hardcode_libdir_flag_spec_ld='-rpath $libdir' + hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' archive_cmds='$LD -shared $libobjs $deplibs $linker_flags -soname $soname -o $lib' if test "x$supports_anon_versioning" = xyes; then archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~ @@ -13169,6 +13357,7 @@ fi # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, )='true' enable_shared_with_static_runtimes=yes + exclude_expsyms='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1,DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib old_postinstall_cmds='chmod 644 $oldlib' @@ -13214,6 +13403,7 @@ fi hardcode_shlibpath_var=unsupported if test "$lt_cv_ld_force_load" = "yes"; then whole_archive_flag_spec='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' + else whole_archive_flag_spec='' fi @@ -13242,10 +13432,6 @@ fi hardcode_shlibpath_var=no ;; - freebsd1*) - ld_shlibs=no - ;; - # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little @@ -13258,7 +13444,7 @@ fi ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. - freebsd2*) + freebsd2.*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_minus_L=yes @@ -13297,7 +13483,6 @@ fi fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' - hardcode_libdir_flag_spec_ld='+b $libdir' hardcode_libdir_separator=: hardcode_direct=yes hardcode_direct_absolute=yes @@ -13921,11 +14106,6 @@ esac - - - - - { $as_echo "$as_me:${as_lineno-$LINENO}: checking dynamic linker characteristics" >&5 $as_echo_n "checking dynamic linker characteristics... " >&6; } @@ -14015,7 +14195,7 @@ need_version=unknown case $host_os in aix3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' shlibpath_var=LIBPATH @@ -14024,7 +14204,7 @@ aix3*) ;; aix[4-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no hardcode_into_libs=yes @@ -14089,7 +14269,7 @@ beos*) ;; bsdi[45]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' @@ -14228,7 +14408,7 @@ darwin* | rhapsody*) ;; dgux*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' @@ -14236,10 +14416,6 @@ dgux*) shlibpath_var=LD_LIBRARY_PATH ;; -freebsd1*) - dynamic_linker=no - ;; - freebsd* | dragonfly*) # DragonFly does not have aout. When/if they implement a new # versioning mechanism, adjust this. @@ -14247,7 +14423,7 @@ freebsd* | dragonfly*) objformat=`/usr/bin/objformat` else case $host_os in - freebsd[123]*) objformat=aout ;; + freebsd[23].*) objformat=aout ;; *) objformat=elf ;; esac fi @@ -14265,7 +14441,7 @@ freebsd* | dragonfly*) esac shlibpath_var=LD_LIBRARY_PATH case $host_os in - freebsd2*) + freebsd2.*) shlibpath_overrides_runpath=yes ;; freebsd3.[01]* | freebsdelf3.[01]*) @@ -14285,17 +14461,18 @@ freebsd* | dragonfly*) ;; gnu*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH + shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; haiku*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no dynamic_linker="$host_os runtime_loader" @@ -14356,7 +14533,7 @@ hpux9* | hpux10* | hpux11*) ;; interix[3-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' @@ -14372,7 +14549,7 @@ irix5* | irix6* | nonstopux*) nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; @@ -14409,9 +14586,9 @@ linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -14501,7 +14678,7 @@ netbsd*) ;; newsos6) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes @@ -14570,7 +14747,7 @@ rdos*) ;; solaris*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -14595,7 +14772,7 @@ sunos4*) ;; sysv4 | sysv4.3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -14619,7 +14796,7 @@ sysv4 | sysv4.3*) sysv4*MP*) if test -d /usr/nec ;then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH @@ -14650,7 +14827,7 @@ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -14660,7 +14837,7 @@ tpf*) ;; uts4*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -15625,7 +15802,6 @@ export_dynamic_flag_spec_CXX= hardcode_direct_CXX=no hardcode_direct_absolute_CXX=no hardcode_libdir_flag_spec_CXX= -hardcode_libdir_flag_spec_ld_CXX= hardcode_libdir_separator_CXX= hardcode_minus_L_CXX=no hardcode_shlibpath_var_CXX=unsupported @@ -16225,6 +16401,7 @@ fi hardcode_shlibpath_var_CXX=unsupported if test "$lt_cv_ld_force_load" = "yes"; then whole_archive_flag_spec_CXX='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' + else whole_archive_flag_spec_CXX='' fi @@ -16269,7 +16446,7 @@ fi esac ;; - freebsd[12]*) + freebsd2.*) # C++ shared libraries reported to be fairly broken before # switch to ELF ld_shlibs_CXX=no @@ -16945,6 +17122,7 @@ _lt_libdeps_save_CFLAGS=$CFLAGS case "$CC $CFLAGS " in #( *\ -flto*\ *) CFLAGS="$CFLAGS -fno-lto" ;; *\ -fwhopr*\ *) CFLAGS="$CFLAGS -fno-whopr" ;; +*\ -fuse-linker-plugin*\ *) CFLAGS="$CFLAGS -fno-use-linker-plugin" ;; esac if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 @@ -17734,7 +17912,9 @@ $as_echo_n "checking whether the $compiler linker ($LD) supports shared librarie ;; cygwin* | mingw* | cegcc*) case $cc_basename in - cl*) ;; + cl*) + exclude_expsyms_CXX='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' + ;; *) export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1 DATA/;s/^.*[ ]__nm__\([^ ]*\)[ ][^ ]*/\1 DATA/;/^I[ ]/d;/^[AITW][ ]/s/.* //'\'' | sort | uniq > $export_symbols' exclude_expsyms_CXX='[_]+GLOBAL_OFFSET_TABLE_|[_]+GLOBAL__[FID]_.*|[_]+head_[A-Za-z0-9_]+_dll|[A-Za-z0-9_]+_dll_iname' @@ -17887,8 +18067,6 @@ esac - - { $as_echo "$as_me:${as_lineno-$LINENO}: checking dynamic linker characteristics" >&5 $as_echo_n "checking dynamic linker characteristics... " >&6; } @@ -17914,7 +18092,7 @@ need_version=unknown case $host_os in aix3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' shlibpath_var=LIBPATH @@ -17923,7 +18101,7 @@ aix3*) ;; aix[4-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no hardcode_into_libs=yes @@ -17988,7 +18166,7 @@ beos*) ;; bsdi[45]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' @@ -18125,7 +18303,7 @@ darwin* | rhapsody*) ;; dgux*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' @@ -18133,10 +18311,6 @@ dgux*) shlibpath_var=LD_LIBRARY_PATH ;; -freebsd1*) - dynamic_linker=no - ;; - freebsd* | dragonfly*) # DragonFly does not have aout. When/if they implement a new # versioning mechanism, adjust this. @@ -18144,7 +18318,7 @@ freebsd* | dragonfly*) objformat=`/usr/bin/objformat` else case $host_os in - freebsd[123]*) objformat=aout ;; + freebsd[23].*) objformat=aout ;; *) objformat=elf ;; esac fi @@ -18162,7 +18336,7 @@ freebsd* | dragonfly*) esac shlibpath_var=LD_LIBRARY_PATH case $host_os in - freebsd2*) + freebsd2.*) shlibpath_overrides_runpath=yes ;; freebsd3.[01]* | freebsdelf3.[01]*) @@ -18182,17 +18356,18 @@ freebsd* | dragonfly*) ;; gnu*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH + shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; haiku*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no dynamic_linker="$host_os runtime_loader" @@ -18253,7 +18428,7 @@ hpux9* | hpux10* | hpux11*) ;; interix[3-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' @@ -18269,7 +18444,7 @@ irix5* | irix6* | nonstopux*) nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; @@ -18306,9 +18481,9 @@ linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -18398,7 +18573,7 @@ netbsd*) ;; newsos6) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes @@ -18467,7 +18642,7 @@ rdos*) ;; solaris*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -18492,7 +18667,7 @@ sunos4*) ;; sysv4 | sysv4.3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -18516,7 +18691,7 @@ sysv4 | sysv4.3*) sysv4*MP*) if test -d /usr/nec ;then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH @@ -18547,7 +18722,7 @@ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -18557,7 +18732,7 @@ tpf*) ;; uts4*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -18706,7 +18881,6 @@ export_dynamic_flag_spec_FC= hardcode_direct_FC=no hardcode_direct_absolute_FC=no hardcode_libdir_flag_spec_FC= -hardcode_libdir_flag_spec_ld_FC= hardcode_libdir_separator_FC= hardcode_minus_L_FC=no hardcode_automatic_FC=no @@ -18862,6 +19036,7 @@ _lt_libdeps_save_CFLAGS=$CFLAGS case "$CC $CFLAGS " in #( *\ -flto*\ *) CFLAGS="$CFLAGS -fno-lto" ;; *\ -fwhopr*\ *) CFLAGS="$CFLAGS -fno-whopr" ;; +*\ -fuse-linker-plugin*\ *) CFLAGS="$CFLAGS -fno-use-linker-plugin" ;; esac if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 @@ -19088,7 +19263,9 @@ lt_prog_compiler_static_FC= case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 lt_prog_compiler_wl_FC='-Xlinker ' - lt_prog_compiler_pic_FC='-Xcompiler -fPIC' + if test -n "$lt_prog_compiler_pic_FC"; then + lt_prog_compiler_pic_FC="-Xcompiler $lt_prog_compiler_pic_FC" + fi ;; esac else @@ -19179,18 +19356,33 @@ lt_prog_compiler_static_FC= ;; *) case `$CC -V 2>&1 | sed 5q` in - *Sun\ F* | *Sun*Fortran*) + *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [1-7].* | *Sun*Fortran*\ 8.[0-3]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker lt_prog_compiler_pic_FC='-KPIC' lt_prog_compiler_static_FC='-Bstatic' lt_prog_compiler_wl_FC='' ;; + *Sun\ F* | *Sun*Fortran*) + lt_prog_compiler_pic_FC='-KPIC' + lt_prog_compiler_static_FC='-Bstatic' + lt_prog_compiler_wl_FC='-Qoption ld ' + ;; *Sun\ C*) # Sun C 5.9 lt_prog_compiler_pic_FC='-KPIC' lt_prog_compiler_static_FC='-Bstatic' lt_prog_compiler_wl_FC='-Wl,' ;; + *Intel*\ [CF]*Compiler*) + lt_prog_compiler_wl_FC='-Wl,' + lt_prog_compiler_pic_FC='-fPIC' + lt_prog_compiler_static_FC='-static' + ;; + *Portland\ Group*) + lt_prog_compiler_wl_FC='-Wl,' + lt_prog_compiler_pic_FC='-fpic' + lt_prog_compiler_static_FC='-Bstatic' + ;; esac ;; esac @@ -19537,7 +19729,6 @@ $as_echo_n "checking whether the $compiler linker ($LD) supports shared librarie hardcode_direct_FC=no hardcode_direct_absolute_FC=no hardcode_libdir_flag_spec_FC= - hardcode_libdir_flag_spec_ld_FC= hardcode_libdir_separator_FC= hardcode_minus_L_FC=no hardcode_shlibpath_var_FC=unsupported @@ -19787,8 +19978,7 @@ _LT_EOF xlf* | bgf* | bgxlf* | mpixlf*) # IBM XL Fortran 10.1 on PPC cannot create shared libs itself whole_archive_flag_spec_FC='--whole-archive$convenience --no-whole-archive' - hardcode_libdir_flag_spec_FC= - hardcode_libdir_flag_spec_ld_FC='-rpath $libdir' + hardcode_libdir_flag_spec_FC='${wl}-rpath ${wl}$libdir' archive_cmds_FC='$LD -shared $libobjs $deplibs $linker_flags -soname $soname -o $lib' if test "x$supports_anon_versioning" = xyes; then archive_expsym_cmds_FC='echo "{ global:" > $output_objdir/$libname.ver~ @@ -20155,6 +20345,7 @@ fi # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, FC)='true' enable_shared_with_static_runtimes_FC=yes + exclude_expsyms_FC='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' export_symbols_cmds_FC='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1,DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib old_postinstall_cmds_FC='chmod 644 $oldlib' @@ -20200,6 +20391,7 @@ fi hardcode_shlibpath_var_FC=unsupported if test "$lt_cv_ld_force_load" = "yes"; then whole_archive_flag_spec_FC='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' + compiler_needs_object_FC=yes else whole_archive_flag_spec_FC='' fi @@ -20228,10 +20420,6 @@ fi hardcode_shlibpath_var_FC=no ;; - freebsd1*) - ld_shlibs_FC=no - ;; - # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little @@ -20244,7 +20432,7 @@ fi ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. - freebsd2*) + freebsd2.*) archive_cmds_FC='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct_FC=yes hardcode_minus_L_FC=yes @@ -20283,7 +20471,6 @@ fi fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec_FC='${wl}+b ${wl}$libdir' - hardcode_libdir_flag_spec_ld_FC='+b $libdir' hardcode_libdir_separator_FC=: hardcode_direct_FC=yes hardcode_direct_absolute_FC=yes @@ -20770,8 +20957,6 @@ esac - - { $as_echo "$as_me:${as_lineno-$LINENO}: checking dynamic linker characteristics" >&5 $as_echo_n "checking dynamic linker characteristics... " >&6; } @@ -20797,7 +20982,7 @@ need_version=unknown case $host_os in aix3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' shlibpath_var=LIBPATH @@ -20806,7 +20991,7 @@ aix3*) ;; aix[4-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no hardcode_into_libs=yes @@ -20871,7 +21056,7 @@ beos*) ;; bsdi[45]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' @@ -21008,7 +21193,7 @@ darwin* | rhapsody*) ;; dgux*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' @@ -21016,10 +21201,6 @@ dgux*) shlibpath_var=LD_LIBRARY_PATH ;; -freebsd1*) - dynamic_linker=no - ;; - freebsd* | dragonfly*) # DragonFly does not have aout. When/if they implement a new # versioning mechanism, adjust this. @@ -21027,7 +21208,7 @@ freebsd* | dragonfly*) objformat=`/usr/bin/objformat` else case $host_os in - freebsd[123]*) objformat=aout ;; + freebsd[23].*) objformat=aout ;; *) objformat=elf ;; esac fi @@ -21045,7 +21226,7 @@ freebsd* | dragonfly*) esac shlibpath_var=LD_LIBRARY_PATH case $host_os in - freebsd2*) + freebsd2.*) shlibpath_overrides_runpath=yes ;; freebsd3.[01]* | freebsdelf3.[01]*) @@ -21065,17 +21246,18 @@ freebsd* | dragonfly*) ;; gnu*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH + shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; haiku*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no dynamic_linker="$host_os runtime_loader" @@ -21136,7 +21318,7 @@ hpux9* | hpux10* | hpux11*) ;; interix[3-9]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' @@ -21152,7 +21334,7 @@ irix5* | irix6* | nonstopux*) nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; @@ -21189,9 +21371,9 @@ linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -21267,7 +21449,7 @@ netbsd*) ;; newsos6) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes @@ -21336,7 +21518,7 @@ rdos*) ;; solaris*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -21361,7 +21543,7 @@ sunos4*) ;; sysv4 | sysv4.3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -21385,7 +21567,7 @@ sysv4 | sysv4.3*) sysv4*MP*) if test -d /usr/nec ;then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH @@ -21416,7 +21598,7 @@ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -21426,7 +21608,7 @@ tpf*) ;; uts4*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -21554,6 +21736,8 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu + + ac_config_commands="$ac_config_commands libtool" @@ -26511,11 +26695,11 @@ else int main () { -/* FIXME: Include the comments suggested by Paul. */ + #ifndef __cplusplus - /* Ultrix mips cc rejects this. */ + /* Ultrix mips cc rejects this sort of thing. */ typedef int charset[2]; - const charset cs; + const charset cs = { 0, 0 }; /* SunOS 4.1.1 cc rejects this. */ char const *const *pcpcc; char **ppc; @@ -26532,8 +26716,9 @@ main () ++pcpcc; ppc = (char**) pcpcc; pcpcc = (char const *const *) ppc; - { /* SCO 3.2v4 cc rejects this. */ - char *t; + { /* SCO 3.2v4 cc rejects this sort of thing. */ + char tx; + char *t = &tx; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; @@ -26549,10 +26734,10 @@ main () iptr p = 0; ++p; } - { /* AIX XL C 1.02.0.0 rejects this saying + { /* AIX XL C 1.02.0.0 rejects this sort of thing, saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ - struct s { int j; const int *ap[3]; }; - struct s *b; b->j = 5; + struct s { int j; const int *ap[3]; } bx; + struct s *b = &bx; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; @@ -30074,7 +30259,7 @@ if test -n "$TESTPARALLEL"; then fi fi -ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testcheck_version.sh test/testerror.sh test/H5srcdir_str.h test/testlibinfo.sh test/testlinks_env.sh testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumppbits.sh tools/h5dump/testh5dumpxml.sh tools/h5ls/testh5ls.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/run-c-ex.sh examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/test/H5srcdir_str.h c++/examples/Makefile c++/examples/run-c++-ex.sh c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/run-fortran-ex.sh fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/test/H5srcdir_str.h hl/tools/Makefile hl/tools/gif2h5/Makefile hl/examples/Makefile hl/examples/run-hlc-ex.sh hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/c++/examples/run-hlc++-ex.sh hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile hl/fortran/examples/run-hlfortran-ex.sh" +ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile test/testcheck_version.sh test/testerror.sh test/H5srcdir_str.h test/testlibinfo.sh test/testlinks_env.sh testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5dump/testh5dumppbits.sh tools/h5dump/testh5dumpxml.sh tools/h5ls/testh5ls.sh tools/h5import/Makefile tools/h5import/h5importtestutil.sh tools/h5diff/Makefile tools/h5diff/testh5diff.sh tools/h5diff/testph5diff.sh tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile tools/h5copy/testh5copy.sh tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5mkgrp.sh tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile examples/Makefile examples/run-c-ex.sh examples/testh5cc.sh c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/test/H5srcdir_str.h c++/examples/Makefile c++/examples/run-c++-ex.sh c++/examples/testh5c++.sh fortran/Makefile fortran/src/h5fc fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile fortran/examples/run-fortran-ex.sh fortran/examples/testh5fc.sh hl/Makefile hl/src/Makefile hl/test/Makefile hl/test/H5srcdir_str.h hl/tools/Makefile hl/tools/gif2h5/Makefile hl/tools/gif2h5/h52giftest.sh hl/examples/Makefile hl/examples/run-hlc-ex.sh hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/c++/examples/run-hlc++-ex.sh hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile hl/fortran/examples/run-hlfortran-ex.sh" cat >confcache <<\_ACEOF @@ -30186,6 +30371,14 @@ LIBOBJS=$ac_libobjs LTLIBOBJS=$ac_ltlibobjs +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking that generated files are newer than configure" >&5 +$as_echo_n "checking that generated files are newer than configure... " >&6; } + if test -n "$am_sleep_pid"; then + # Hide warnings about reused PIDs. + wait $am_sleep_pid 2>/dev/null + fi + { $as_echo "$as_me:${as_lineno-$LINENO}: result: done" >&5 +$as_echo "done" >&6; } if test -n "$EXEEXT"; then am__EXEEXT_TRUE= am__EXEEXT_FALSE='#' @@ -30557,16 +30750,16 @@ if (echo >conf$$.file) 2>/dev/null; then # ... but there are two gotchas: # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail. # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable. - # In both cases, we have to default to `cp -p'. + # In both cases, we have to default to `cp -pR'. ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || - as_ln_s='cp -p' + as_ln_s='cp -pR' elif ln conf$$.file conf$$ 2>/dev/null; then as_ln_s=ln else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file rmdir conf$$.dir 2>/dev/null @@ -30626,28 +30819,16 @@ else as_mkdir_p=false fi -if test -x / >/dev/null 2>&1; then - as_test_x='test -x' -else - if ls -dL / >/dev/null 2>&1; then - as_ls_L_option=L - else - as_ls_L_option= - fi - as_test_x=' - eval sh -c '\'' - if test -d "$1"; then - test -d "$1/."; - else - case $1 in #( - -*)set "./$1";; - esac; - case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #(( - ???[sx]*):;;*)false;;esac;fi - '\'' sh - ' -fi -as_executable_p=$as_test_x + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p +as_test_x='test -x' +as_executable_p=as_fn_executable_p # Sed expression to map a string onto a valid CPP name. as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'" @@ -30668,8 +30849,8 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.9.124, which was -generated by GNU Autoconf 2.68. Invocation command line was +This file was extended by HDF5 $as_me 1.9.128, which was +generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES CONFIG_HEADERS = $CONFIG_HEADERS @@ -30734,11 +30915,11 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -HDF5 config.status 1.9.124 -configured by $0, generated by GNU Autoconf 2.68, +HDF5 config.status 1.9.128 +configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" -Copyright (C) 2010 Free Software Foundation, Inc. +Copyright (C) 2012 Free Software Foundation, Inc. This config.status script is free software; the Free Software Foundation gives unlimited permission to copy, distribute and modify it." @@ -30829,7 +31010,7 @@ fi _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 if \$ac_cs_recheck; then - set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion + set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion shift \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6 CONFIG_SHELL='$SHELL' @@ -30875,6 +31056,7 @@ pic_mode='`$ECHO "$pic_mode" | $SED "$delay_single_quote_subst"`' enable_fast_install='`$ECHO "$enable_fast_install" | $SED "$delay_single_quote_subst"`' SHELL='`$ECHO "$SHELL" | $SED "$delay_single_quote_subst"`' ECHO='`$ECHO "$ECHO" | $SED "$delay_single_quote_subst"`' +PATH_SEPARATOR='`$ECHO "$PATH_SEPARATOR" | $SED "$delay_single_quote_subst"`' host_alias='`$ECHO "$host_alias" | $SED "$delay_single_quote_subst"`' host='`$ECHO "$host" | $SED "$delay_single_quote_subst"`' host_os='`$ECHO "$host_os" | $SED "$delay_single_quote_subst"`' @@ -30955,7 +31137,6 @@ with_gnu_ld='`$ECHO "$with_gnu_ld" | $SED "$delay_single_quote_subst"`' allow_undefined_flag='`$ECHO "$allow_undefined_flag" | $SED "$delay_single_quote_subst"`' no_undefined_flag='`$ECHO "$no_undefined_flag" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec='`$ECHO "$hardcode_libdir_flag_spec" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld='`$ECHO "$hardcode_libdir_flag_spec_ld" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator='`$ECHO "$hardcode_libdir_separator" | $SED "$delay_single_quote_subst"`' hardcode_direct='`$ECHO "$hardcode_direct" | $SED "$delay_single_quote_subst"`' hardcode_direct_absolute='`$ECHO "$hardcode_direct_absolute" | $SED "$delay_single_quote_subst"`' @@ -31053,8 +31234,6 @@ no_undefined_flag_CXX='`$ECHO "$no_undefined_flag_CXX" | $SED "$delay_single_quo no_undefined_flag_FC='`$ECHO "$no_undefined_flag_FC" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec_CXX='`$ECHO "$hardcode_libdir_flag_spec_CXX" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec_FC='`$ECHO "$hardcode_libdir_flag_spec_FC" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld_CXX='`$ECHO "$hardcode_libdir_flag_spec_ld_CXX" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld_FC='`$ECHO "$hardcode_libdir_flag_spec_ld_FC" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator_CXX='`$ECHO "$hardcode_libdir_separator_CXX" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator_FC='`$ECHO "$hardcode_libdir_separator_FC" | $SED "$delay_single_quote_subst"`' hardcode_direct_CXX='`$ECHO "$hardcode_direct_CXX" | $SED "$delay_single_quote_subst"`' @@ -31118,6 +31297,7 @@ DLLTOOL \ OBJDUMP \ SHELL \ ECHO \ +PATH_SEPARATOR \ SED \ GREP \ EGREP \ @@ -31166,7 +31346,6 @@ with_gnu_ld \ allow_undefined_flag \ no_undefined_flag \ hardcode_libdir_flag_spec \ -hardcode_libdir_flag_spec_ld \ hardcode_libdir_separator \ exclude_expsyms \ include_expsyms \ @@ -31215,8 +31394,6 @@ no_undefined_flag_CXX \ no_undefined_flag_FC \ hardcode_libdir_flag_spec_CXX \ hardcode_libdir_flag_spec_FC \ -hardcode_libdir_flag_spec_ld_CXX \ -hardcode_libdir_flag_spec_ld_FC \ hardcode_libdir_separator_CXX \ hardcode_libdir_separator_FC \ exclude_expsyms_CXX \ @@ -31354,16 +31531,21 @@ do "tools/h5dump/testh5dumpxml.sh") CONFIG_FILES="$CONFIG_FILES tools/h5dump/testh5dumpxml.sh" ;; "tools/h5ls/testh5ls.sh") CONFIG_FILES="$CONFIG_FILES tools/h5ls/testh5ls.sh" ;; "tools/h5import/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5import/Makefile" ;; + "tools/h5import/h5importtestutil.sh") CONFIG_FILES="$CONFIG_FILES tools/h5import/h5importtestutil.sh" ;; "tools/h5diff/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5diff/Makefile" ;; + "tools/h5diff/testh5diff.sh") CONFIG_FILES="$CONFIG_FILES tools/h5diff/testh5diff.sh" ;; + "tools/h5diff/testph5diff.sh") CONFIG_FILES="$CONFIG_FILES tools/h5diff/testph5diff.sh" ;; "tools/h5jam/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5jam/Makefile" ;; "tools/h5jam/testh5jam.sh") CONFIG_FILES="$CONFIG_FILES tools/h5jam/testh5jam.sh" ;; "tools/h5repack/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5repack/Makefile" ;; "tools/h5repack/h5repack.sh") CONFIG_FILES="$CONFIG_FILES tools/h5repack/h5repack.sh" ;; "tools/h5ls/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5ls/Makefile" ;; "tools/h5copy/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5copy/Makefile" ;; + "tools/h5copy/testh5copy.sh") CONFIG_FILES="$CONFIG_FILES tools/h5copy/testh5copy.sh" ;; "tools/lib/Makefile") CONFIG_FILES="$CONFIG_FILES tools/lib/Makefile" ;; "tools/misc/Makefile") CONFIG_FILES="$CONFIG_FILES tools/misc/Makefile" ;; "tools/misc/h5cc") CONFIG_FILES="$CONFIG_FILES tools/misc/h5cc" ;; + "tools/misc/testh5mkgrp.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5mkgrp.sh" ;; "tools/misc/testh5repart.sh") CONFIG_FILES="$CONFIG_FILES tools/misc/testh5repart.sh" ;; "tools/h5stat/testh5stat.sh") CONFIG_FILES="$CONFIG_FILES tools/h5stat/testh5stat.sh" ;; "tools/h5stat/Makefile") CONFIG_FILES="$CONFIG_FILES tools/h5stat/Makefile" ;; @@ -31392,6 +31574,7 @@ do "hl/test/H5srcdir_str.h") CONFIG_FILES="$CONFIG_FILES hl/test/H5srcdir_str.h" ;; "hl/tools/Makefile") CONFIG_FILES="$CONFIG_FILES hl/tools/Makefile" ;; "hl/tools/gif2h5/Makefile") CONFIG_FILES="$CONFIG_FILES hl/tools/gif2h5/Makefile" ;; + "hl/tools/gif2h5/h52giftest.sh") CONFIG_FILES="$CONFIG_FILES hl/tools/gif2h5/h52giftest.sh" ;; "hl/examples/Makefile") CONFIG_FILES="$CONFIG_FILES hl/examples/Makefile" ;; "hl/examples/run-hlc-ex.sh") CONFIG_FILES="$CONFIG_FILES hl/examples/run-hlc-ex.sh" ;; "hl/c++/Makefile") CONFIG_FILES="$CONFIG_FILES hl/c++/Makefile" ;; @@ -32030,7 +32213,7 @@ $as_echo "$as_me: executing $ac_file commands" >&6;} # Strip MF so we end up with the name of the file. mf=`echo "$mf" | sed -e 's/:.*$//'` # Check whether this is an Automake generated Makefile or not. - # We used to match only the files named `Makefile.in', but + # We used to match only the files named 'Makefile.in', but # some people rename them; so instead we look at the file content. # Grep'ing the first line is not enough: some people post-process # each Makefile.in and add a new line on top of each file to say so. @@ -32064,21 +32247,19 @@ $as_echo X"$mf" | continue fi # Extract the definition of DEPDIR, am__include, and am__quote - # from the Makefile without running `make'. + # from the Makefile without running 'make'. DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"` test -z "$DEPDIR" && continue am__include=`sed -n 's/^am__include = //p' < "$mf"` test -z "am__include" && continue am__quote=`sed -n 's/^am__quote = //p' < "$mf"` - # When using ansi2knr, U may be empty or an underscore; expand it - U=`sed -n 's/^U = //p' < "$mf"` # Find all dependency output files, they are included files with # $(DEPDIR) in their names. We invoke sed twice because it is the # simplest approach to changing $(DEPDIR) to its actual value in the # expansion. for file in `sed -n " s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \ - sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do + sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g'`; do # Make sure the directory exists. test -f "$dirpart/$file" && continue fdir=`$as_dirname -- "$file" || @@ -32132,8 +32313,8 @@ $as_echo X"$file" | # NOTE: Changes made to this file will be lost: look at ltmain.sh. # # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is part of GNU Libtool. @@ -32196,6 +32377,9 @@ SHELL=$lt_SHELL # An echo program that protects backslashes. ECHO=$lt_ECHO +# The PATH separator for the build system. +PATH_SEPARATOR=$lt_PATH_SEPARATOR + # The host system. host_alias=$host_alias host=$host @@ -32491,10 +32675,6 @@ no_undefined_flag=$lt_no_undefined_flag # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator @@ -32837,10 +33017,6 @@ no_undefined_flag=$lt_no_undefined_flag_CXX # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_CXX -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_CXX - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator_CXX @@ -32994,10 +33170,6 @@ no_undefined_flag=$lt_no_undefined_flag_FC # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_FC -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_FC - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator_FC @@ -33398,16 +33570,16 @@ if (echo >conf$$.file) 2>/dev/null; then # ... but there are two gotchas: # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail. # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable. - # In both cases, we have to default to `cp -p'. + # In both cases, we have to default to `cp -pR'. ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || - as_ln_s='cp -p' + as_ln_s='cp -pR' elif ln conf$$.file conf$$ 2>/dev/null; then as_ln_s=ln else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi else - as_ln_s='cp -p' + as_ln_s='cp -pR' fi rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file rmdir conf$$.dir 2>/dev/null @@ -33467,28 +33639,16 @@ else as_mkdir_p=false fi -if test -x / >/dev/null 2>&1; then - as_test_x='test -x' -else - if ls -dL / >/dev/null 2>&1; then - as_ls_L_option=L - else - as_ls_L_option= - fi - as_test_x=' - eval sh -c '\'' - if test -d "$1"; then - test -d "$1/."; - else - case $1 in #( - -*)set "./$1";; - esac; - case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #(( - ???[sx]*):;;*)false;;esac;fi - '\'' sh - ' -fi -as_executable_p=$as_test_x + +# as_fn_executable_p FILE +# ----------------------- +# Test if FILE is an executable regular file. +as_fn_executable_p () +{ + test -f "$1" && test -x "$1" +} # as_fn_executable_p +as_test_x='test -x' +as_executable_p=as_fn_executable_p # Sed expression to map a string onto a valid CPP name. as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'" @@ -33529,10 +33689,10 @@ Usage: $0 [OPTIONS] Report bugs to <bug-libtool@gnu.org>." lt_cl_version="\ -HDF5 config.lt 1.9.124 -configured by $0, generated by GNU Autoconf 2.68. +HDF5 config.lt 1.9.128 +configured by $0, generated by GNU Autoconf 2.69. -Copyright (C) 2010 Free Software Foundation, Inc. +Copyright (C) 2011 Free Software Foundation, Inc. This config.lt script is free software; the Free Software Foundation gives unlimited permision to copy, distribute and modify it." @@ -33583,6 +33743,7 @@ pic_mode='`$ECHO "$pic_mode" | $SED "$delay_single_quote_subst"`' enable_fast_install='`$ECHO "$enable_fast_install" | $SED "$delay_single_quote_subst"`' SHELL='`$ECHO "$SHELL" | $SED "$delay_single_quote_subst"`' ECHO='`$ECHO "$ECHO" | $SED "$delay_single_quote_subst"`' +PATH_SEPARATOR='`$ECHO "$PATH_SEPARATOR" | $SED "$delay_single_quote_subst"`' host_alias='`$ECHO "$host_alias" | $SED "$delay_single_quote_subst"`' host='`$ECHO "$host" | $SED "$delay_single_quote_subst"`' host_os='`$ECHO "$host_os" | $SED "$delay_single_quote_subst"`' @@ -33663,7 +33824,6 @@ with_gnu_ld='`$ECHO "$with_gnu_ld" | $SED "$delay_single_quote_subst"`' allow_undefined_flag='`$ECHO "$allow_undefined_flag" | $SED "$delay_single_quote_subst"`' no_undefined_flag='`$ECHO "$no_undefined_flag" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec='`$ECHO "$hardcode_libdir_flag_spec" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld='`$ECHO "$hardcode_libdir_flag_spec_ld" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator='`$ECHO "$hardcode_libdir_separator" | $SED "$delay_single_quote_subst"`' hardcode_direct='`$ECHO "$hardcode_direct" | $SED "$delay_single_quote_subst"`' hardcode_direct_absolute='`$ECHO "$hardcode_direct_absolute" | $SED "$delay_single_quote_subst"`' @@ -33761,8 +33921,6 @@ no_undefined_flag_CXX='`$ECHO "$no_undefined_flag_CXX" | $SED "$delay_single_quo no_undefined_flag_FC='`$ECHO "$no_undefined_flag_FC" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec_CXX='`$ECHO "$hardcode_libdir_flag_spec_CXX" | $SED "$delay_single_quote_subst"`' hardcode_libdir_flag_spec_FC='`$ECHO "$hardcode_libdir_flag_spec_FC" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld_CXX='`$ECHO "$hardcode_libdir_flag_spec_ld_CXX" | $SED "$delay_single_quote_subst"`' -hardcode_libdir_flag_spec_ld_FC='`$ECHO "$hardcode_libdir_flag_spec_ld_FC" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator_CXX='`$ECHO "$hardcode_libdir_separator_CXX" | $SED "$delay_single_quote_subst"`' hardcode_libdir_separator_FC='`$ECHO "$hardcode_libdir_separator_FC" | $SED "$delay_single_quote_subst"`' hardcode_direct_CXX='`$ECHO "$hardcode_direct_CXX" | $SED "$delay_single_quote_subst"`' @@ -33826,6 +33984,7 @@ DLLTOOL \ OBJDUMP \ SHELL \ ECHO \ +PATH_SEPARATOR \ SED \ GREP \ EGREP \ @@ -33874,7 +34033,6 @@ with_gnu_ld \ allow_undefined_flag \ no_undefined_flag \ hardcode_libdir_flag_spec \ -hardcode_libdir_flag_spec_ld \ hardcode_libdir_separator \ exclude_expsyms \ include_expsyms \ @@ -33923,8 +34081,6 @@ no_undefined_flag_CXX \ no_undefined_flag_FC \ hardcode_libdir_flag_spec_CXX \ hardcode_libdir_flag_spec_FC \ -hardcode_libdir_flag_spec_ld_CXX \ -hardcode_libdir_flag_spec_ld_FC \ hardcode_libdir_separator_CXX \ hardcode_libdir_separator_FC \ exclude_expsyms_CXX \ @@ -34057,8 +34213,8 @@ $as_echo "$as_me: creating $ofile" >&6;} # NOTE: Changes made to this file will be lost: look at ltmain.sh. # # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is part of GNU Libtool. @@ -34121,6 +34277,9 @@ SHELL=$lt_SHELL # An echo program that protects backslashes. ECHO=$lt_ECHO +# The PATH separator for the build system. +PATH_SEPARATOR=$lt_PATH_SEPARATOR + # The host system. host_alias=$host_alias host=$host @@ -34416,10 +34575,6 @@ no_undefined_flag=$lt_no_undefined_flag # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator @@ -34762,10 +34917,6 @@ no_undefined_flag=$lt_no_undefined_flag_CXX # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_CXX -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_CXX - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator_CXX @@ -34919,10 +35070,6 @@ no_undefined_flag=$lt_no_undefined_flag_FC # This must work even if \$libdir does not exist hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_FC -# If ld is used when linking, flag to hardcode \$libdir into a binary -# during linking. This must work even if \$libdir does not exist. -hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_FC - # Whether we need a single "-rpath" flag with a separated argument. hardcode_libdir_separator=$lt_hardcode_libdir_separator_FC diff --git a/configure.in b/configure.ac index 975e848..39a00b9 100644 --- a/configure.in +++ b/configure.ac @@ -16,7 +16,7 @@ dnl access to either file, you may request a copy from help@hdfgroup.org. dnl ---------------------------------------------------------------------- dnl Initialize configure. dnl -AC_REVISION($Id$) +AC_REVISION($Id: configure.ac 22697 2012-08-19 14:35:47Z hdftest $) AC_PREREQ([2.53]) dnl AC_INIT takes the name of the package, the version number, and an @@ -26,7 +26,7 @@ dnl dnl NOTE: Don't forget to change the version number here when we do a dnl release!!! dnl -AC_INIT([HDF5], [1.9.124], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.9.128], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AM_CONFIG_HEADER([src/H5config.h]) @@ -922,7 +922,7 @@ fi dnl ---------------------------------------------------------------------- dnl Fortran libraries are not currently supported on Mac. Disable them. -dnl this is overridable with '--enable-unsupported'. +dnl (this is overridable with --enable-unsupported). dnl AC_SUBST([H5_FORTRAN_SHARED]) H5_FORTRAN_SHARED="no" @@ -4406,16 +4406,21 @@ AC_CONFIG_FILES([src/libhdf5.settings tools/h5dump/testh5dumpxml.sh tools/h5ls/testh5ls.sh tools/h5import/Makefile + tools/h5import/h5importtestutil.sh tools/h5diff/Makefile + tools/h5diff/testh5diff.sh + tools/h5diff/testph5diff.sh tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/h5copy/Makefile + tools/h5copy/testh5copy.sh tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc + tools/misc/testh5mkgrp.sh tools/misc/testh5repart.sh tools/h5stat/testh5stat.sh tools/h5stat/Makefile @@ -4444,6 +4449,7 @@ AC_CONFIG_FILES([src/libhdf5.settings hl/test/H5srcdir_str.h hl/tools/Makefile hl/tools/gif2h5/Makefile + hl/tools/gif2h5/h52giftest.sh hl/examples/Makefile hl/examples/run-hlc-ex.sh hl/c++/Makefile diff --git a/examples/Makefile.am b/examples/Makefile.am index a35d8ca..58f50e7 100644 --- a/examples/Makefile.am +++ b/examples/Makefile.am @@ -22,14 +22,14 @@ include $(top_srcdir)/config/commence.am if BUILD_PARALLEL_CONDITIONAL - TEST_PROG_PARA = ph5example + EXAMPLE_PROG_PARA = ph5example endif # Example programs. # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. # Use the boilerplate in config/examples.am instead. -TEST_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ +EXAMPLE_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers \ h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg TEST_SCRIPT=testh5cc.sh diff --git a/examples/Makefile.in b/examples/Makefile.in index c01afcc..04c010d 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -56,31 +72,45 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/run-c-ex.sh.in $(srcdir)/testh5cc.sh.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am -TESTS = +TESTS = $(TEST_SCRIPT) subdir = examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-c-ex.sh testh5cc.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -98,12 +128,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -361,13 +388,13 @@ TRACE = perl $(top_srcdir)/bin/trace # .chklog files are output from those tests. # *.clog are from the MPE option. CHECK_CLEANFILES = *.chkexe *.chklog *.clog $(EXTLINK_DIRS) *.h5 -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = ph5example +@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = ph5example # Example programs. # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. # Use the boilerplate in config/examples.am instead. -TEST_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ +EXAMPLE_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers \ h5_ref2reg h5_extlink h5_elink_unix2win h5_shared_mesg @@ -396,12 +423,11 @@ EXAMPLETOPDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -414,6 +440,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -442,6 +472,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -467,6 +498,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -513,10 +546,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -728,7 +766,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -754,7 +792,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -778,7 +816,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -788,7 +826,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -878,7 +916,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -908,7 +946,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/examples/testh5cc.sh.in b/examples/testh5cc.sh.in index 0e2b851..d3f1cfc 100644 --- a/examples/testh5cc.sh.in +++ b/examples/testh5cc.sh.in @@ -23,6 +23,8 @@ # Added version compatibility tests. # +srcdir=@srcdir@ + # Initializations TESTNAME=h5cc EXIT_SUCCESS=0 @@ -53,11 +55,6 @@ H5_USE_16_API_DEFAULT=`grep '#define H5_USE_16_API_DEFAULT ' ../src/H5pubconf.h` myos=`uname -s` myhostnama=`uname -n` -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # Generate some source files and library for tests. suffix=c # source file suffix hdf5main=${H5TOOL}_hdf5main.$suffix diff --git a/fortran/Makefile.in b/fortran/Makefile.in index 9f006f0..806eb30 100644 --- a/fortran/Makefile.in +++ b/fortran/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # Top-level HDF5-Fortran Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,24 +71,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = fortran ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -82,6 +105,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -89,8 +117,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ dir0=`pwd`; \ @@ -117,7 +147,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -135,12 +165,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -417,6 +444,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -445,6 +476,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -462,12 +494,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -477,7 +509,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -491,37 +527,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -530,6 +535,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -593,6 +602,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -628,13 +651,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -670,10 +690,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -753,22 +778,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installcheck-local installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - mostlyclean mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags tags-recursive \ - uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installcheck-local installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -802,7 +828,7 @@ check-clean :: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -828,7 +854,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -852,7 +878,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -862,7 +888,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -952,7 +978,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -982,7 +1008,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/fortran/examples/Makefile.am b/fortran/examples/Makefile.am index 7465b98..4fb4180 100644 --- a/fortran/examples/Makefile.am +++ b/fortran/examples/Makefile.am @@ -23,7 +23,7 @@ include $(top_srcdir)/config/commence.am # Compile parallel fortran examples only if parallel is enabled if BUILD_PARALLEL_CONDITIONAL - TEST_PROG_PARA=ph5example + EXAMPLE_PROG_PARA=ph5example endif # These are the programs that 'make all' or 'make tests' will build and @@ -32,7 +32,7 @@ endif # We don't tell automake about these programs so that it doesn't try to # compile them with the regular fortran compiler. -TEST_PROG=dsetexample fileexample rwdsetexample attrexample groupexample \ +EXAMPLE_PROG=dsetexample fileexample rwdsetexample attrexample groupexample \ grpsexample grpdsetexample hyperslab selectele grpit refobjexample \ refregexample mountexample compound @@ -46,7 +46,7 @@ INSTALL_SCRIPT_FILES = run-fortran-ex.sh # Add attention tests for Fortran 2003 features if FORTRAN_2003_CONDITIONAL_F - TEST_PROG += rwdset_fortran2003 nested_derived_type \ + EXAMPLE_PROG += rwdset_fortran2003 nested_derived_type \ compound_fortran2003 compound_complex_fortran2003 INSTALL_FILES += rwdset_fortran2003.f90 nested_derived_type.f90 \ compound_fortran2003.f90 compound_complex_fortran2003.f90 diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in index 410f1e9..06c2632 100644 --- a/fortran/examples/Makefile.in +++ b/fortran/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -56,6 +72,7 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/run-fortran-ex.sh.in $(srcdir)/testh5fc.sh.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am @@ -67,28 +84,41 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ @FORTRAN_2003_CONDITIONAL_F_TRUE@am__append_2 = rwdset_fortran2003.f90 nested_derived_type.f90 \ @FORTRAN_2003_CONDITIONAL_F_TRUE@ compound_fortran2003.f90 compound_complex_fortran2003.f90 -TESTS = +TESTS = $(TEST_SCRIPT) subdir = fortran/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-fortran-ex.sh testh5fc.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -106,12 +136,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -371,14 +398,14 @@ TRACE = perl $(top_srcdir)/bin/trace CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # Compile parallel fortran examples only if parallel is enabled -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = ph5example +@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = ph5example # These are the programs that 'make all' or 'make tests' will build and # that 'make check' will run. List them in the order in which they should # be run. # We don't tell automake about these programs so that it doesn't try to # compile them with the regular fortran compiler. -TEST_PROG = dsetexample fileexample rwdsetexample attrexample \ +EXAMPLE_PROG = dsetexample fileexample rwdsetexample attrexample \ groupexample grpsexample grpdsetexample hyperslab selectele \ grpit refobjexample refregexample mountexample compound \ $(am__append_1) @@ -401,12 +428,11 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/fortran # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -419,6 +445,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -447,6 +477,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -472,6 +503,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -518,10 +551,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -736,7 +774,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -762,7 +800,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -786,7 +824,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -796,7 +834,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -886,7 +924,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -916,7 +954,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/fortran/examples/testh5fc.sh.in b/fortran/examples/testh5fc.sh.in index 234d4e2..cd3b86e 100644 --- a/fortran/examples/testh5fc.sh.in +++ b/fortran/examples/testh5fc.sh.in @@ -19,6 +19,8 @@ # Modification: # +srcdir=@srcdir@ + # Initializations TESTNAME=h5fc EXIT_SUCCESS=0 @@ -46,11 +48,6 @@ verbose=yes myos=`uname -s` myhostnama=`uname -n` -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # Generate some source files and library for tests. suffix=f90 # source file suffix hdf5main=${H5TOOL}_hdf5main.$suffix diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt index c0fea8c..25e14ba 100644 --- a/fortran/src/CMakeLists.txt +++ b/fortran/src/CMakeLists.txt @@ -272,7 +272,7 @@ ENDIF (WIN32 AND NOT CYGWIN) IF (HDF5_EXPORTED_TARGETS) INSTALL_TARGET_PDB (${HDF5_F90_C_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} fortlibraries) - INSTALL_TARGET_PDB (${HDF5_F90_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} fortlibraries) + #INSTALL_TARGET_PDB (${HDF5_F90_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} fortlibraries) INSTALL ( TARGETS diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c index 05b7da0..7b55384 100644 --- a/fortran/src/H5_f.c +++ b/fortran/src/H5_f.c @@ -330,20 +330,21 @@ nh5close_types_c( hid_t_f * types, int_f *lentypes, * PURPOSE * Initialize Fortran flags * INPUTS - * h5d_flags - H5D inteface flags - * h5e_flags - H5E inteface flags - * h5e_hid_flags - H5E inteface flags of type hid_t - * h5f_flags - H5F interface flags - * h5fd_flags - H5FD interface flags - * h5fd_hid_flags - H5FD interface flags of type hid_t - * h5g_flags - H5G interface flags - * h5i_flags - H5I interface flags - * h5p_flags - H5P interface flags - * h5p_flags_int - H5P interface flags of type integer - * h5r_flags - H5R interface flags - * h5s_flags - H5S interface flags - * h5t_flags - H5T interface flags - * h5z_flags - H5Z interface flags + * h5d_flags - H5D inteface flags + * h5e_flags - H5E inteface flags + * h5e_hid_flags - H5E inteface flags of type hid_t + * h5f_flags - H5F interface flags + * h5fd_flags - H5FD interface flags + * h5fd_hid_flags - H5FD interface flags of type hid_t + * h5g_flags - H5G interface flags + * h5i_flags - H5I interface flags + * h5p_flags - H5P interface flags + * h5p_flags_int - H5P interface flags of type integer + * h5r_flags - H5R interface flags + * h5s_flags - H5S interface flags + * h5s_hsize_flags - H5S interface flags of type hsize_t + * h5t_flags - H5T interface flags + * h5z_flags - H5Z interface flags * OUTPUTS * None * RETURNS @@ -368,7 +369,7 @@ nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, - int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags) + hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags) /******/ { int ret_value = -1; @@ -579,31 +580,29 @@ nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int /* * H5S flags */ - - h5s_flags[0] = (int_f)H5S_SCALAR; h5s_flags[1] = (int_f)H5S_SIMPLE; h5s_flags[2] = (int_f)H5S_NULL; h5s_flags[3] = (int_f)H5S_SELECT_SET; h5s_flags[4] = (int_f)H5S_SELECT_OR; - h5s_flags[5] = (int_f)H5S_UNLIMITED; - h5s_flags[6] = (int_f)H5S_ALL; - - h5s_flags[7] = (int_f)H5S_SELECT_NOOP; - h5s_flags[8] = (int_f)H5S_SELECT_AND; - h5s_flags[9] = (int_f)H5S_SELECT_XOR; - h5s_flags[10] = (int_f)H5S_SELECT_NOTB; - h5s_flags[11] = (int_f)H5S_SELECT_NOTA; - h5s_flags[12] = (int_f)H5S_SELECT_APPEND; - h5s_flags[13] = (int_f)H5S_SELECT_PREPEND; - h5s_flags[14] = (int_f)H5S_SELECT_INVALID; - - - h5s_flags[15] = (int_f)H5S_SEL_ERROR; - h5s_flags[16] = (int_f)H5S_SEL_NONE; - h5s_flags[17] = (int_f)H5S_SEL_POINTS; - h5s_flags[18] = (int_f)H5S_SEL_HYPERSLABS; - h5s_flags[19] = (int_f)H5S_SEL_ALL; + h5s_flags[5] = (int_f)H5S_ALL; + + h5s_flags[6] = (int_f)H5S_SELECT_NOOP; + h5s_flags[7] = (int_f)H5S_SELECT_AND; + h5s_flags[8] = (int_f)H5S_SELECT_XOR; + h5s_flags[9] = (int_f)H5S_SELECT_NOTB; + h5s_flags[10] = (int_f)H5S_SELECT_NOTA; + h5s_flags[11] = (int_f)H5S_SELECT_APPEND; + h5s_flags[12] = (int_f)H5S_SELECT_PREPEND; + h5s_flags[13] = (int_f)H5S_SELECT_INVALID; + + h5s_flags[14] = (int_f)H5S_SEL_ERROR; + h5s_flags[15] = (int_f)H5S_SEL_NONE; + h5s_flags[16] = (int_f)H5S_SEL_POINTS; + h5s_flags[17] = (int_f)H5S_SEL_HYPERSLABS; + h5s_flags[18] = (int_f)H5S_SEL_ALL; + + h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED; /* * H5T flags diff --git a/fortran/src/H5_ff.f90 b/fortran/src/H5_ff.f90 index dcd1917..c51b039 100644 --- a/fortran/src/H5_ff.f90 +++ b/fortran/src/H5_ff.f90 @@ -100,6 +100,7 @@ CONTAINS i_H5P_flags_int, & i_H5R_flags, & i_H5S_flags, & + i_H5S_hsize_flags, & i_H5T_flags, & i_H5Z_flags, & i_H5generic_flags) @@ -118,6 +119,7 @@ CONTAINS INTEGER i_H5P_flags_int(H5P_FLAGS_INT_LEN) INTEGER i_H5R_flags(H5R_FLAGS_LEN) INTEGER i_H5S_flags(H5S_FLAGS_LEN) + INTEGER(HSIZE_T) i_H5S_hsize_flags(H5S_HSIZE_FLAGS_LEN) INTEGER i_H5T_flags(H5T_FLAGS_LEN) INTEGER i_H5Z_flags(H5Z_FLAGS_LEN) INTEGER i_H5generic_flags(H5generic_FLAGS_LEN) @@ -150,6 +152,7 @@ CONTAINS H5P_flags_int, & H5R_flags, & H5S_flags, & + H5S_hsize_flags, & H5T_flags, & H5Z_flags, & H5generic_flags) diff --git a/fortran/src/H5f90global.f90 b/fortran/src/H5f90global.f90 index da7a736..6943270 100644 --- a/fortran/src/H5f90global.f90 +++ b/fortran/src/H5f90global.f90 @@ -105,8 +105,13 @@ MODULE H5GLOBAL H5T_STD_U8LE, & H5T_STD_U16BE, & H5T_STD_U16LE, & - H5T_STD_U32BE, & - H5T_STD_U32LE, & + H5T_STD_U32BE + +! NOTE: Splitting the line since the Fortran 95 standard limits the number of +! continuation lines to 39; the F03/F08 standard limits the number +! to 255 lines. + + INTEGER(HID_T) H5T_STD_U32LE, & H5T_STD_U64BE, & H5T_STD_U64LE, & H5T_STRING, & @@ -685,7 +690,7 @@ MODULE H5GLOBAL ! ! H5S flags declaration ! - INTEGER, PARAMETER :: H5S_FLAGS_LEN = 20 + INTEGER, PARAMETER :: H5S_FLAGS_LEN = 19 INTEGER H5S_flags(H5S_FLAGS_LEN) !DEC$if defined(BUILD_HDF5_DLL) !DEC$ATTRIBUTES DLLEXPORT :: /H5S_FLAGS/ @@ -696,7 +701,6 @@ MODULE H5GLOBAL INTEGER :: H5S_SIMPLE_F INTEGER :: H5S_NULL_F - INTEGER :: H5S_UNLIMITED_F INTEGER :: H5S_ALL_F INTEGER :: H5S_SELECT_NOOP_F @@ -710,7 +714,6 @@ MODULE H5GLOBAL INTEGER :: H5S_SELECT_PREPEND_F INTEGER :: H5S_SELECT_INVALID_F - INTEGER :: H5S_SEL_ERROR_F INTEGER :: H5S_SEL_NONE_F INTEGER :: H5S_SEL_POINTS_F @@ -722,24 +725,34 @@ MODULE H5GLOBAL EQUIVALENCE(H5S_flags(3), H5S_NULL_F) EQUIVALENCE(H5S_flags(4), H5S_SELECT_SET_F) EQUIVALENCE(H5S_flags(5), H5S_SELECT_OR_F) - EQUIVALENCE(H5S_flags(6), H5S_UNLIMITED_F) - EQUIVALENCE(H5S_flags(7), H5S_ALL_F) - - EQUIVALENCE(H5S_flags(8), H5S_SELECT_NOOP_F) - EQUIVALENCE(H5S_flags(9), H5S_SELECT_AND_F) - EQUIVALENCE(H5S_flags(10), H5S_SELECT_XOR_F) - EQUIVALENCE(H5S_flags(11), H5S_SELECT_NOTB_F) - EQUIVALENCE(H5S_flags(12), H5S_SELECT_NOTA_F) - EQUIVALENCE(H5S_flags(13), H5S_SELECT_APPEND_F) - EQUIVALENCE(H5S_flags(14), H5S_SELECT_PREPEND_F) - EQUIVALENCE(H5S_flags(15), H5S_SELECT_INVALID_F) - - - EQUIVALENCE(H5S_flags(16), H5S_SEL_ERROR_F) - EQUIVALENCE(H5S_flags(17), H5S_SEL_NONE_F) - EQUIVALENCE(H5S_flags(18), H5S_SEL_POINTS_F) - EQUIVALENCE(H5S_flags(19), H5S_SEL_HYPERSLABS_F) - EQUIVALENCE(H5S_flags(20), H5S_SEL_ALL_F) + EQUIVALENCE(H5S_flags(6), H5S_ALL_F) + + EQUIVALENCE(H5S_flags(7), H5S_SELECT_NOOP_F) + EQUIVALENCE(H5S_flags(8), H5S_SELECT_AND_F) + EQUIVALENCE(H5S_flags(9), H5S_SELECT_XOR_F) + EQUIVALENCE(H5S_flags(10), H5S_SELECT_NOTB_F) + EQUIVALENCE(H5S_flags(11), H5S_SELECT_NOTA_F) + EQUIVALENCE(H5S_flags(12), H5S_SELECT_APPEND_F) + EQUIVALENCE(H5S_flags(13), H5S_SELECT_PREPEND_F) + EQUIVALENCE(H5S_flags(14), H5S_SELECT_INVALID_F) + + + EQUIVALENCE(H5S_flags(15), H5S_SEL_ERROR_F) + EQUIVALENCE(H5S_flags(16), H5S_SEL_NONE_F) + EQUIVALENCE(H5S_flags(17), H5S_SEL_POINTS_F) + EQUIVALENCE(H5S_flags(18), H5S_SEL_HYPERSLABS_F) + EQUIVALENCE(H5S_flags(19), H5S_SEL_ALL_F) + + INTEGER, PARAMETER :: H5S_HSIZE_FLAGS_LEN = 1 + INTEGER(HSIZE_T) H5S_hsize_flags(H5S_HSIZE_FLAGS_LEN) + !DEC$if defined(BUILD_HDF5_DLL) DEC$ATTRIBUTES DLLEXPORT :: /H5S_HSIZE_FLAGS/ + !DEC$endif + COMMON /H5S_HSIZE_FLAGS/ H5S_hsize_flags + + INTEGER(HSIZE_T) :: H5S_UNLIMITED_F + + EQUIVALENCE(H5S_hsize_flags(1), H5S_UNLIMITED_F) + ! ! H5T flags declaration ! diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h index a504653..d0a8361 100644 --- a/fortran/src/H5f90proto.h +++ b/fortran/src/H5f90proto.h @@ -1235,7 +1235,7 @@ H5_FCDLL int_f nh5init_flags_c(int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_ int_f *h5fd_flags, hid_t_f *h5fd_hid_flags, int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags, hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags, - int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags); + hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags); H5_FCDLL int_f nh5init1_flags_c(int_f *h5lib_flags); H5_FCDLL int_f nh5get_libversion_c(int_f *majnum, int_f *minnum, int_f *relnum); H5_FCDLL int_f nh5check_version_c(int_f *majnum, int_f *minnum, int_f *relnum); diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in index e0fd502..a8c0546 100644 --- a/fortran/src/Makefile.in +++ b/fortran/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,7 +69,9 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5fc.in $(top_srcdir)/config/commence.am \ + $(srcdir)/h5fc.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am @@ -66,7 +84,7 @@ noinst_PROGRAMS = H5match_types$(EXEEXT) H5fortran_detect$(EXEEXT) \ TESTS = subdir = fortran/src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -94,6 +112,12 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" LTLIBRARIES = $(lib_LTLIBRARIES) libhdf5_fortran_la_DEPENDENCIES = $(LIBHDF5) @@ -121,9 +145,10 @@ am_libhdf5_fortran_la_OBJECTS = H5f90global.lo H5fortran_types.lo \ H5Pff$(F_STATUS).lo H5Rff$(F_STATUS).lo H5Tff$(F_STATUS).lo \ $(am__objects_1) libhdf5_fortran_la_OBJECTS = $(am_libhdf5_fortran_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5_fortran_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=FC \ $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(FCLD) \ $(AM_FCFLAGS) $(FCFLAGS) $(libhdf5_fortran_la_LDFLAGS) \ @@ -143,6 +168,18 @@ am__H5test_kind_SOURCES_DIST = $(srcdir)/H5test_kind.f90 \ @FORTRAN_HAVE_SIZEOF_TRUE@ H5test_kind_SIZEOF.$(OBJEXT) H5test_kind_OBJECTS = $(am_H5test_kind_OBJECTS) H5test_kind_LDADD = $(LDADD) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -153,46 +190,51 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = FCCOMPILE = $(FC) $(AM_FCFLAGS) $(FCFLAGS) LTFCCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS) -AM_V_FC = $(am__v_FC_$(V)) -am__v_FC_ = $(am__v_FC_$(AM_DEFAULT_VERBOSITY)) -am__v_FC_0 = @echo " FC " $@; +AM_V_FC = $(am__v_FC_@AM_V@) +am__v_FC_ = $(am__v_FC_@AM_DEFAULT_V@) +am__v_FC_0 = @echo " FC " $@; +am__v_FC_1 = FCLD = $(FC) FCLINK = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_FCLD = $(am__v_FCLD_$(V)) -am__v_FCLD_ = $(am__v_FCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_FCLD_0 = @echo " FCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_FCLD = $(am__v_FCLD_@AM_V@) +am__v_FCLD_ = $(am__v_FCLD_@AM_DEFAULT_V@) +am__v_FCLD_0 = @echo " FCLD " $@; +am__v_FCLD_1 = SOURCES = $(libhdf5_fortran_la_SOURCES) $(H5fortran_detect_SOURCES) \ H5match_types.c $(H5test_kind_SOURCES) DIST_SOURCES = $(am__libhdf5_fortran_la_SOURCES_DIST) \ $(H5fortran_detect_SOURCES) H5match_types.c \ $(am__H5test_kind_SOURCES_DIST) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -211,12 +253,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -478,7 +517,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 # Include src directory in both Fortran and C flags (C compiler is used @@ -568,6 +607,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -598,6 +641,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -611,7 +655,6 @@ h5fc: $(top_builddir)/config.status $(srcdir)/h5fc.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -619,6 +662,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -634,13 +679,15 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5_fortran.la: $(libhdf5_fortran_la_OBJECTS) $(libhdf5_fortran_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5_fortran.la: $(libhdf5_fortran_la_OBJECTS) $(libhdf5_fortran_la_DEPENDENCIES) $(EXTRA_libhdf5_fortran_la_DEPENDENCIES) $(AM_V_FCLD)$(libhdf5_fortran_la_LINK) -rpath $(libdir) $(libhdf5_fortran_la_OBJECTS) $(libhdf5_fortran_la_LIBADD) $(LIBS) clean-noinstPROGRAMS: @@ -651,13 +698,13 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -H5fortran_detect$(EXEEXT): $(H5fortran_detect_OBJECTS) $(H5fortran_detect_DEPENDENCIES) +H5fortran_detect$(EXEEXT): $(H5fortran_detect_OBJECTS) $(H5fortran_detect_DEPENDENCIES) $(EXTRA_H5fortran_detect_DEPENDENCIES) @rm -f H5fortran_detect$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(H5fortran_detect_OBJECTS) $(H5fortran_detect_LDADD) $(LIBS) -H5match_types$(EXEEXT): $(H5match_types_OBJECTS) $(H5match_types_DEPENDENCIES) +H5match_types$(EXEEXT): $(H5match_types_OBJECTS) $(H5match_types_DEPENDENCIES) $(EXTRA_H5match_types_DEPENDENCIES) @rm -f H5match_types$(EXEEXT) $(AM_V_CCLD)$(LINK) $(H5match_types_OBJECTS) $(H5match_types_LDADD) $(LIBS) -H5test_kind$(EXEEXT): $(H5test_kind_OBJECTS) $(H5test_kind_DEPENDENCIES) +H5test_kind$(EXEEXT): $(H5test_kind_OBJECTS) $(H5test_kind_DEPENDENCIES) $(EXTRA_H5test_kind_DEPENDENCIES) @rm -f H5test_kind$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(H5test_kind_OBJECTS) $(H5test_kind_LDADD) $(LIBS) @@ -688,54 +735,44 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< .f90.o: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< .f90.obj: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` .f90.lo: - $(AM_V_FC) @AM_BACKSLASH@ - $(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< H5test_kind.o: $(srcdir)/H5test_kind.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind.o $(FCFLAGS_f90) `test -f '$(srcdir)/H5test_kind.f90' || echo '$(srcdir)/'`$(srcdir)/H5test_kind.f90 + $(AM_V_FC)$(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind.o $(FCFLAGS_f90) `test -f '$(srcdir)/H5test_kind.f90' || echo '$(srcdir)/'`$(srcdir)/H5test_kind.f90 H5test_kind.obj: $(srcdir)/H5test_kind.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind.obj $(FCFLAGS_f90) `if test -f '$(srcdir)/H5test_kind.f90'; then $(CYGPATH_W) '$(srcdir)/H5test_kind.f90'; else $(CYGPATH_W) '$(srcdir)/$(srcdir)/H5test_kind.f90'; fi` + $(AM_V_FC)$(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind.obj $(FCFLAGS_f90) `if test -f '$(srcdir)/H5test_kind.f90'; then $(CYGPATH_W) '$(srcdir)/H5test_kind.f90'; else $(CYGPATH_W) '$(srcdir)/$(srcdir)/H5test_kind.f90'; fi` H5test_kind_SIZEOF.o: $(srcdir)/H5test_kind_SIZEOF.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind_SIZEOF.o $(FCFLAGS_f90) `test -f '$(srcdir)/H5test_kind_SIZEOF.f90' || echo '$(srcdir)/'`$(srcdir)/H5test_kind_SIZEOF.f90 + $(AM_V_FC)$(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind_SIZEOF.o $(FCFLAGS_f90) `test -f '$(srcdir)/H5test_kind_SIZEOF.f90' || echo '$(srcdir)/'`$(srcdir)/H5test_kind_SIZEOF.f90 H5test_kind_SIZEOF.obj: $(srcdir)/H5test_kind_SIZEOF.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind_SIZEOF.obj $(FCFLAGS_f90) `if test -f '$(srcdir)/H5test_kind_SIZEOF.f90'; then $(CYGPATH_W) '$(srcdir)/H5test_kind_SIZEOF.f90'; else $(CYGPATH_W) '$(srcdir)/$(srcdir)/H5test_kind_SIZEOF.f90'; fi` + $(AM_V_FC)$(FC) $(AM_FCFLAGS) $(FCFLAGS) -c -o H5test_kind_SIZEOF.obj $(FCFLAGS_f90) `if test -f '$(srcdir)/H5test_kind_SIZEOF.f90'; then $(CYGPATH_W) '$(srcdir)/H5test_kind_SIZEOF.f90'; else $(CYGPATH_W) '$(srcdir)/$(srcdir)/H5test_kind_SIZEOF.f90'; fi` mostlyclean-libtool: -rm -f *.lo @@ -792,6 +829,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -845,10 +896,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -939,7 +995,7 @@ uninstall-am: uninstall-libLTLIBRARIES uninstall-local .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-generic clean-libLTLIBRARIES clean-libtool \ - clean-local clean-noinstPROGRAMS ctags distclean \ + clean-local clean-noinstPROGRAMS cscopelist ctags distclean \ distclean-compile distclean-generic distclean-libtool \ distclean-local distclean-tags distdir dvi dvi-am html html-am \ info info-am install install-am install-data install-data-am \ @@ -1083,7 +1139,7 @@ HDF5mpio.lo: $(srcdir)/H5FDmpioff.f90 H5f90global.lo H5_ff$(F_STATUS).lo # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -1109,7 +1165,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -1133,7 +1189,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -1143,7 +1199,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1233,7 +1289,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1263,7 +1319,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in index 27198a8..e42b080 100644 --- a/fortran/test/Makefile.in +++ b/fortran/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,6 +68,7 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am @@ -61,10 +78,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ @FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static @FORTRAN_2003_CONDITIONAL_F_TRUE@am__append_2 = fortranlib_test_F03 check_PROGRAMS = $(am__EXEEXT_2) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_2) subdir = fortran/test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -75,9 +92,10 @@ LTLIBRARIES = $(noinst_LTLIBRARIES) libh5test_fortran_la_LIBADD = am_libh5test_fortran_la_OBJECTS = tf.lo t.lo libh5test_fortran_la_OBJECTS = $(am_libh5test_fortran_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = @FORTRAN_2003_CONDITIONAL_F_TRUE@am__EXEEXT_1 = \ @FORTRAN_2003_CONDITIONAL_F_TRUE@ fortranlib_test_F03$(EXEEXT) am__EXEEXT_2 = fortranlib_test$(EXEEXT) fflush1$(EXEEXT) \ @@ -129,6 +147,18 @@ fortranlib_test_F03_OBJECTS = $(am_fortranlib_test_F03_OBJECTS) fortranlib_test_F03_LDADD = $(LDADD) fortranlib_test_F03_DEPENDENCIES = libh5test_fortran.la $(LIBH5TEST) \ $(LIBH5F) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -139,35 +169,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = FCCOMPILE = $(FC) $(AM_FCFLAGS) $(FCFLAGS) LTFCCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS) -AM_V_FC = $(am__v_FC_$(V)) -am__v_FC_ = $(am__v_FC_$(AM_DEFAULT_VERBOSITY)) -am__v_FC_0 = @echo " FC " $@; +AM_V_FC = $(am__v_FC_@AM_V@) +am__v_FC_ = $(am__v_FC_@AM_DEFAULT_V@) +am__v_FC_0 = @echo " FC " $@; +am__v_FC_1 = FCLD = $(FC) FCLINK = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_FCLD = $(am__v_FCLD_$(V)) -am__v_FCLD_ = $(am__v_FCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_FCLD_0 = @echo " FCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_FCLD = $(am__v_FCLD_@AM_V@) +am__v_FCLD_ = $(am__v_FCLD_@AM_DEFAULT_V@) +am__v_FCLD_0 = @echo " FCLD " $@; +am__v_FCLD_1 = SOURCES = $(libh5test_fortran_la_SOURCES) $(fflush1_SOURCES) \ $(fflush2_SOURCES) $(fortranlib_test_SOURCES) \ $(fortranlib_test_1_8_SOURCES) $(fortranlib_test_F03_SOURCES) @@ -175,12 +203,19 @@ DIST_SOURCES = $(libh5test_fortran_la_SOURCES) $(fflush1_SOURCES) \ $(fflush2_SOURCES) $(fortranlib_test_SOURCES) \ $(fortranlib_test_1_8_SOURCES) \ $(am__fortranlib_test_F03_SOURCES_DIST) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -201,12 +236,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -517,6 +549,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -546,6 +582,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -558,13 +595,15 @@ $(am__aclocal_m4_deps): clean-noinstLTLIBRARIES: -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) - @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libh5test_fortran.la: $(libh5test_fortran_la_OBJECTS) $(libh5test_fortran_la_DEPENDENCIES) + @list='$(noinst_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libh5test_fortran.la: $(libh5test_fortran_la_OBJECTS) $(libh5test_fortran_la_DEPENDENCIES) $(EXTRA_libh5test_fortran_la_DEPENDENCIES) $(AM_V_FCLD)$(FCLINK) $(libh5test_fortran_la_OBJECTS) $(libh5test_fortran_la_LIBADD) $(LIBS) clean-checkPROGRAMS: @@ -575,19 +614,19 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -fflush1$(EXEEXT): $(fflush1_OBJECTS) $(fflush1_DEPENDENCIES) +fflush1$(EXEEXT): $(fflush1_OBJECTS) $(fflush1_DEPENDENCIES) $(EXTRA_fflush1_DEPENDENCIES) @rm -f fflush1$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(fflush1_OBJECTS) $(fflush1_LDADD) $(LIBS) -fflush2$(EXEEXT): $(fflush2_OBJECTS) $(fflush2_DEPENDENCIES) +fflush2$(EXEEXT): $(fflush2_OBJECTS) $(fflush2_DEPENDENCIES) $(EXTRA_fflush2_DEPENDENCIES) @rm -f fflush2$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(fflush2_OBJECTS) $(fflush2_LDADD) $(LIBS) -fortranlib_test$(EXEEXT): $(fortranlib_test_OBJECTS) $(fortranlib_test_DEPENDENCIES) +fortranlib_test$(EXEEXT): $(fortranlib_test_OBJECTS) $(fortranlib_test_DEPENDENCIES) $(EXTRA_fortranlib_test_DEPENDENCIES) @rm -f fortranlib_test$(EXEEXT) $(AM_V_FCLD)$(fortranlib_test_LINK) $(fortranlib_test_OBJECTS) $(fortranlib_test_LDADD) $(LIBS) -fortranlib_test_1_8$(EXEEXT): $(fortranlib_test_1_8_OBJECTS) $(fortranlib_test_1_8_DEPENDENCIES) +fortranlib_test_1_8$(EXEEXT): $(fortranlib_test_1_8_OBJECTS) $(fortranlib_test_1_8_DEPENDENCIES) $(EXTRA_fortranlib_test_1_8_DEPENDENCIES) @rm -f fortranlib_test_1_8$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(fortranlib_test_1_8_OBJECTS) $(fortranlib_test_1_8_LDADD) $(LIBS) -fortranlib_test_F03$(EXEEXT): $(fortranlib_test_F03_OBJECTS) $(fortranlib_test_F03_DEPENDENCIES) +fortranlib_test_F03$(EXEEXT): $(fortranlib_test_F03_OBJECTS) $(fortranlib_test_F03_DEPENDENCIES) $(EXTRA_fortranlib_test_F03_DEPENDENCIES) @rm -f fortranlib_test_F03$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(fortranlib_test_F03_OBJECTS) $(fortranlib_test_F03_LDADD) $(LIBS) @@ -602,150 +641,116 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< .f90.o: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< .f90.obj: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` .f90.lo: - $(AM_V_FC) @AM_BACKSLASH@ - $(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< fortranlib_test-fortranlib_test.o: fortranlib_test.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-fortranlib_test.o $(FCFLAGS_f90) `test -f 'fortranlib_test.f90' || echo '$(srcdir)/'`fortranlib_test.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-fortranlib_test.o $(FCFLAGS_f90) `test -f 'fortranlib_test.f90' || echo '$(srcdir)/'`fortranlib_test.f90 fortranlib_test-fortranlib_test.obj: fortranlib_test.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-fortranlib_test.obj $(FCFLAGS_f90) `if test -f 'fortranlib_test.f90'; then $(CYGPATH_W) 'fortranlib_test.f90'; else $(CYGPATH_W) '$(srcdir)/fortranlib_test.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-fortranlib_test.obj $(FCFLAGS_f90) `if test -f 'fortranlib_test.f90'; then $(CYGPATH_W) 'fortranlib_test.f90'; else $(CYGPATH_W) '$(srcdir)/fortranlib_test.f90'; fi` fortranlib_test-tH5F.o: tH5F.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5F.o $(FCFLAGS_f90) `test -f 'tH5F.f90' || echo '$(srcdir)/'`tH5F.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5F.o $(FCFLAGS_f90) `test -f 'tH5F.f90' || echo '$(srcdir)/'`tH5F.f90 fortranlib_test-tH5F.obj: tH5F.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5F.obj $(FCFLAGS_f90) `if test -f 'tH5F.f90'; then $(CYGPATH_W) 'tH5F.f90'; else $(CYGPATH_W) '$(srcdir)/tH5F.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5F.obj $(FCFLAGS_f90) `if test -f 'tH5F.f90'; then $(CYGPATH_W) 'tH5F.f90'; else $(CYGPATH_W) '$(srcdir)/tH5F.f90'; fi` fortranlib_test-tH5D.o: tH5D.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5D.o $(FCFLAGS_f90) `test -f 'tH5D.f90' || echo '$(srcdir)/'`tH5D.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5D.o $(FCFLAGS_f90) `test -f 'tH5D.f90' || echo '$(srcdir)/'`tH5D.f90 fortranlib_test-tH5D.obj: tH5D.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5D.obj $(FCFLAGS_f90) `if test -f 'tH5D.f90'; then $(CYGPATH_W) 'tH5D.f90'; else $(CYGPATH_W) '$(srcdir)/tH5D.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5D.obj $(FCFLAGS_f90) `if test -f 'tH5D.f90'; then $(CYGPATH_W) 'tH5D.f90'; else $(CYGPATH_W) '$(srcdir)/tH5D.f90'; fi` fortranlib_test-tH5R.o: tH5R.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5R.o $(FCFLAGS_f90) `test -f 'tH5R.f90' || echo '$(srcdir)/'`tH5R.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5R.o $(FCFLAGS_f90) `test -f 'tH5R.f90' || echo '$(srcdir)/'`tH5R.f90 fortranlib_test-tH5R.obj: tH5R.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5R.obj $(FCFLAGS_f90) `if test -f 'tH5R.f90'; then $(CYGPATH_W) 'tH5R.f90'; else $(CYGPATH_W) '$(srcdir)/tH5R.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5R.obj $(FCFLAGS_f90) `if test -f 'tH5R.f90'; then $(CYGPATH_W) 'tH5R.f90'; else $(CYGPATH_W) '$(srcdir)/tH5R.f90'; fi` fortranlib_test-tH5S.o: tH5S.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5S.o $(FCFLAGS_f90) `test -f 'tH5S.f90' || echo '$(srcdir)/'`tH5S.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5S.o $(FCFLAGS_f90) `test -f 'tH5S.f90' || echo '$(srcdir)/'`tH5S.f90 fortranlib_test-tH5S.obj: tH5S.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5S.obj $(FCFLAGS_f90) `if test -f 'tH5S.f90'; then $(CYGPATH_W) 'tH5S.f90'; else $(CYGPATH_W) '$(srcdir)/tH5S.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5S.obj $(FCFLAGS_f90) `if test -f 'tH5S.f90'; then $(CYGPATH_W) 'tH5S.f90'; else $(CYGPATH_W) '$(srcdir)/tH5S.f90'; fi` fortranlib_test-tH5T.o: tH5T.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5T.o $(FCFLAGS_f90) `test -f 'tH5T.f90' || echo '$(srcdir)/'`tH5T.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5T.o $(FCFLAGS_f90) `test -f 'tH5T.f90' || echo '$(srcdir)/'`tH5T.f90 fortranlib_test-tH5T.obj: tH5T.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5T.obj $(FCFLAGS_f90) `if test -f 'tH5T.f90'; then $(CYGPATH_W) 'tH5T.f90'; else $(CYGPATH_W) '$(srcdir)/tH5T.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5T.obj $(FCFLAGS_f90) `if test -f 'tH5T.f90'; then $(CYGPATH_W) 'tH5T.f90'; else $(CYGPATH_W) '$(srcdir)/tH5T.f90'; fi` fortranlib_test-tH5VL.o: tH5VL.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5VL.o $(FCFLAGS_f90) `test -f 'tH5VL.f90' || echo '$(srcdir)/'`tH5VL.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5VL.o $(FCFLAGS_f90) `test -f 'tH5VL.f90' || echo '$(srcdir)/'`tH5VL.f90 fortranlib_test-tH5VL.obj: tH5VL.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5VL.obj $(FCFLAGS_f90) `if test -f 'tH5VL.f90'; then $(CYGPATH_W) 'tH5VL.f90'; else $(CYGPATH_W) '$(srcdir)/tH5VL.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5VL.obj $(FCFLAGS_f90) `if test -f 'tH5VL.f90'; then $(CYGPATH_W) 'tH5VL.f90'; else $(CYGPATH_W) '$(srcdir)/tH5VL.f90'; fi` fortranlib_test-tH5Z.o: tH5Z.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Z.o $(FCFLAGS_f90) `test -f 'tH5Z.f90' || echo '$(srcdir)/'`tH5Z.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Z.o $(FCFLAGS_f90) `test -f 'tH5Z.f90' || echo '$(srcdir)/'`tH5Z.f90 fortranlib_test-tH5Z.obj: tH5Z.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Z.obj $(FCFLAGS_f90) `if test -f 'tH5Z.f90'; then $(CYGPATH_W) 'tH5Z.f90'; else $(CYGPATH_W) '$(srcdir)/tH5Z.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Z.obj $(FCFLAGS_f90) `if test -f 'tH5Z.f90'; then $(CYGPATH_W) 'tH5Z.f90'; else $(CYGPATH_W) '$(srcdir)/tH5Z.f90'; fi` fortranlib_test-tH5Sselect.o: tH5Sselect.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Sselect.o $(FCFLAGS_f90) `test -f 'tH5Sselect.f90' || echo '$(srcdir)/'`tH5Sselect.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Sselect.o $(FCFLAGS_f90) `test -f 'tH5Sselect.f90' || echo '$(srcdir)/'`tH5Sselect.f90 fortranlib_test-tH5Sselect.obj: tH5Sselect.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Sselect.obj $(FCFLAGS_f90) `if test -f 'tH5Sselect.f90'; then $(CYGPATH_W) 'tH5Sselect.f90'; else $(CYGPATH_W) '$(srcdir)/tH5Sselect.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5Sselect.obj $(FCFLAGS_f90) `if test -f 'tH5Sselect.f90'; then $(CYGPATH_W) 'tH5Sselect.f90'; else $(CYGPATH_W) '$(srcdir)/tH5Sselect.f90'; fi` fortranlib_test-tH5P.o: tH5P.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5P.o $(FCFLAGS_f90) `test -f 'tH5P.f90' || echo '$(srcdir)/'`tH5P.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5P.o $(FCFLAGS_f90) `test -f 'tH5P.f90' || echo '$(srcdir)/'`tH5P.f90 fortranlib_test-tH5P.obj: tH5P.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5P.obj $(FCFLAGS_f90) `if test -f 'tH5P.f90'; then $(CYGPATH_W) 'tH5P.f90'; else $(CYGPATH_W) '$(srcdir)/tH5P.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5P.obj $(FCFLAGS_f90) `if test -f 'tH5P.f90'; then $(CYGPATH_W) 'tH5P.f90'; else $(CYGPATH_W) '$(srcdir)/tH5P.f90'; fi` fortranlib_test-tH5A.o: tH5A.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5A.o $(FCFLAGS_f90) `test -f 'tH5A.f90' || echo '$(srcdir)/'`tH5A.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5A.o $(FCFLAGS_f90) `test -f 'tH5A.f90' || echo '$(srcdir)/'`tH5A.f90 fortranlib_test-tH5A.obj: tH5A.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5A.obj $(FCFLAGS_f90) `if test -f 'tH5A.f90'; then $(CYGPATH_W) 'tH5A.f90'; else $(CYGPATH_W) '$(srcdir)/tH5A.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5A.obj $(FCFLAGS_f90) `if test -f 'tH5A.f90'; then $(CYGPATH_W) 'tH5A.f90'; else $(CYGPATH_W) '$(srcdir)/tH5A.f90'; fi` fortranlib_test-tH5I.o: tH5I.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5I.o $(FCFLAGS_f90) `test -f 'tH5I.f90' || echo '$(srcdir)/'`tH5I.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5I.o $(FCFLAGS_f90) `test -f 'tH5I.f90' || echo '$(srcdir)/'`tH5I.f90 fortranlib_test-tH5I.obj: tH5I.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5I.obj $(FCFLAGS_f90) `if test -f 'tH5I.f90'; then $(CYGPATH_W) 'tH5I.f90'; else $(CYGPATH_W) '$(srcdir)/tH5I.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5I.obj $(FCFLAGS_f90) `if test -f 'tH5I.f90'; then $(CYGPATH_W) 'tH5I.f90'; else $(CYGPATH_W) '$(srcdir)/tH5I.f90'; fi` fortranlib_test-tH5G.o: tH5G.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5G.o $(FCFLAGS_f90) `test -f 'tH5G.f90' || echo '$(srcdir)/'`tH5G.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5G.o $(FCFLAGS_f90) `test -f 'tH5G.f90' || echo '$(srcdir)/'`tH5G.f90 fortranlib_test-tH5G.obj: tH5G.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5G.obj $(FCFLAGS_f90) `if test -f 'tH5G.f90'; then $(CYGPATH_W) 'tH5G.f90'; else $(CYGPATH_W) '$(srcdir)/tH5G.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5G.obj $(FCFLAGS_f90) `if test -f 'tH5G.f90'; then $(CYGPATH_W) 'tH5G.f90'; else $(CYGPATH_W) '$(srcdir)/tH5G.f90'; fi` fortranlib_test-tH5E.o: tH5E.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5E.o $(FCFLAGS_f90) `test -f 'tH5E.f90' || echo '$(srcdir)/'`tH5E.f90 + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5E.o $(FCFLAGS_f90) `test -f 'tH5E.f90' || echo '$(srcdir)/'`tH5E.f90 fortranlib_test-tH5E.obj: tH5E.f90 - $(AM_V_FC) @AM_BACKSLASH@ - $(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5E.obj $(FCFLAGS_f90) `if test -f 'tH5E.f90'; then $(CYGPATH_W) 'tH5E.f90'; else $(CYGPATH_W) '$(srcdir)/tH5E.f90'; fi` + $(AM_V_FC)$(FC) $(fortranlib_test_FCFLAGS) $(FCFLAGS) -c -o fortranlib_test-tH5E.obj $(FCFLAGS_f90) `if test -f 'tH5E.f90'; then $(CYGPATH_W) 'tH5E.f90'; else $(CYGPATH_W) '$(srcdir)/tH5E.f90'; fi` mostlyclean-libtool: -rm -f *.lo @@ -802,6 +807,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -851,10 +870,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -942,17 +966,18 @@ uninstall-am: .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ - clean-noinstLTLIBRARIES ctags distclean distclean-compile \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags uninstall uninstall-am + clean-noinstLTLIBRARIES cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-libtool \ + distclean-tags distdir dvi dvi-am html html-am info info-am \ + install install-am install-data install-data-am install-dvi \ + install-dvi-am install-exec install-exec-am install-html \ + install-html-am install-info install-info-am install-man \ + install-pdf install-pdf-am install-ps install-ps-am \ + install-strip installcheck installcheck-am installdirs \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ + uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -973,7 +998,7 @@ fflush2.chkexe_: fflush1.chkexe_ # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -999,7 +1024,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -1023,7 +1048,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -1033,7 +1058,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1123,7 +1148,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1153,7 +1178,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in index 272fc45..1cbc87e 100644 --- a/fortran/testpar/Makefile.in +++ b/fortran/testpar/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # HDF5 Fortran Parallel Library Test Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,6 +67,7 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am @@ -61,10 +78,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ # parallel code. But you're welcome to try...) @FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = subdir = fortran/testpar ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -78,37 +95,53 @@ parallel_test_OBJECTS = $(am_parallel_test_OBJECTS) parallel_test_LDADD = $(LDADD) parallel_test_DEPENDENCIES = $(LIBH5FTEST) $(LIBH5TEST) $(LIBH5F) \ $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src FCCOMPILE = $(FC) $(AM_FCFLAGS) $(FCFLAGS) LTFCCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS) -AM_V_FC = $(am__v_FC_$(V)) -am__v_FC_ = $(am__v_FC_$(AM_DEFAULT_VERBOSITY)) -am__v_FC_0 = @echo " FC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_FC = $(am__v_FC_@AM_V@) +am__v_FC_ = $(am__v_FC_@AM_DEFAULT_V@) +am__v_FC_0 = @echo " FC " $@; +am__v_FC_1 = FCLD = $(FC) FCLINK = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_FCLD = $(am__v_FCLD_$(V)) -am__v_FCLD_ = $(am__v_FCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_FCLD_0 = @echo " FCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_FCLD = $(am__v_FCLD_@AM_V@) +am__v_FCLD_ = $(am__v_FCLD_@AM_DEFAULT_V@) +am__v_FCLD_0 = @echo " FCLD " $@; +am__v_FCLD_1 = SOURCES = $(parallel_test_SOURCES) DIST_SOURCES = $(parallel_test_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -130,12 +163,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -419,6 +449,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -448,6 +482,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -466,7 +501,7 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -parallel_test$(EXEEXT): $(parallel_test_OBJECTS) $(parallel_test_DEPENDENCIES) +parallel_test$(EXEEXT): $(parallel_test_OBJECTS) $(parallel_test_DEPENDENCIES) $(EXTRA_parallel_test_DEPENDENCIES) @rm -f parallel_test$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(parallel_test_OBJECTS) $(parallel_test_LDADD) $(LIBS) @@ -477,16 +512,13 @@ distclean-compile: -rm -f *.tab.c .f90.o: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< .f90.obj: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` .f90.lo: - $(AM_V_FC) @AM_BACKSLASH@ - $(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< mostlyclean-libtool: -rm -f *.lo @@ -543,6 +575,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -592,10 +638,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -679,8 +730,8 @@ uninstall-am: .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-checkPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-checkPROGRAMS clean-generic clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -708,7 +759,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -734,7 +785,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -758,7 +809,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -768,7 +819,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -858,7 +909,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -888,7 +939,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/Makefile.in b/hl/Makefile.in index 6f7b51c..dddd693 100644 --- a/hl/Makefile.in +++ b/hl/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # # HDF5 High-Level Makefile(.in) VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,24 +71,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = hl ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -82,6 +105,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -89,8 +117,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ dir0=`pwd`; \ @@ -117,7 +147,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -135,12 +165,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -414,6 +441,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -442,6 +473,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -459,12 +491,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -474,7 +506,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -488,37 +524,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -527,6 +532,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -590,6 +599,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -625,13 +648,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -667,10 +687,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -750,22 +775,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installcheck-local installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - mostlyclean mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags tags-recursive \ - uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installcheck-local installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -803,7 +829,7 @@ build-check-clean: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -829,7 +855,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -853,7 +879,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -863,7 +889,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -953,7 +979,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -983,7 +1009,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in index a629463..4a33b33 100644 --- a/hl/c++/Makefile.in +++ b/hl/c++/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # High-Level API C++ Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,24 +67,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = hl/c++ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -78,6 +101,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -85,8 +113,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ dir0=`pwd`; \ @@ -113,7 +143,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -131,12 +161,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -408,6 +435,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -436,6 +467,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -453,12 +485,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -468,7 +500,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -482,37 +518,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -521,6 +526,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -584,6 +593,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -619,13 +642,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -661,10 +681,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -744,22 +769,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installcheck-local installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - mostlyclean mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags tags-recursive \ - uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installcheck-local installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -793,7 +819,7 @@ check-clean :: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -819,7 +845,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -843,7 +869,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -853,7 +879,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -943,7 +969,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -973,7 +999,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/c++/examples/Makefile.am b/hl/c++/examples/Makefile.am index c690a12..5dd5a75 100644 --- a/hl/c++/examples/Makefile.am +++ b/hl/c++/examples/Makefile.am @@ -23,7 +23,7 @@ include $(top_srcdir)/config/commence.am # These are the programs that 'make all' or 'make prog' will build and # which 'make check' will run. List them in the order they should be run. -TEST_PROG=ptExampleFL ptExampleVL +EXAMPLE_PROG=ptExampleFL ptExampleVL # These are the example files to be installed INSTALL_FILES=ptExampleFL.cpp ptExampleVL.cpp diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in index dd07bfd..bd0edf0 100644 --- a/hl/c++/examples/Makefile.in +++ b/hl/c++/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,31 +71,45 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/run-hlc++-ex.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/run-hlc++-ex.sh.in $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am TESTS = subdir = hl/c++/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-hlc++-ex.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -97,12 +127,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -363,7 +390,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # These are the programs that 'make all' or 'make prog' will build and # which 'make check' will run. List them in the order they should be run. -TEST_PROG = ptExampleFL ptExampleVL +EXAMPLE_PROG = ptExampleFL ptExampleVL # These are the example files to be installed INSTALL_FILES = ptExampleFL.cpp ptExampleVL.cpp @@ -378,12 +405,11 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl/c++ # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -396,6 +422,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -424,6 +454,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -447,6 +478,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -493,10 +526,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -681,7 +719,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -707,7 +745,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -731,7 +769,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -741,7 +779,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -831,7 +869,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -861,7 +899,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in index f22d1c8..9f5cad5 100644 --- a/hl/c++/src/Makefile.in +++ b/hl/c++/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,7 +69,9 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \ - $(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \ + $(srcdir)/Makefile.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am @@ -62,7 +80,7 @@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \ TESTS = subdir = hl/c++/src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -90,18 +108,37 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)" LTLIBRARIES = $(lib_LTLIBRARIES) libhdf5_hl_cpp_la_DEPENDENCIES = $(LIBH5_HL) $(LIBH5CPP) am_libhdf5_hl_cpp_la_OBJECTS = H5PacketTable.lo libhdf5_hl_cpp_la_OBJECTS = $(am_libhdf5_hl_cpp_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5_hl_cpp_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX \ $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CXXLD) \ $(AM_CXXFLAGS) $(CXXFLAGS) $(libhdf5_hl_cpp_la_LDFLAGS) \ $(LDFLAGS) -o $@ +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -112,31 +149,34 @@ LTCXXCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CXXFLAGS) $(CXXFLAGS) -AM_V_CXX = $(am__v_CXX_$(V)) -am__v_CXX_ = $(am__v_CXX_$(AM_DEFAULT_VERBOSITY)) -am__v_CXX_0 = @echo " CXX " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CXX = $(am__v_CXX_@AM_V@) +am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@) +am__v_CXX_0 = @echo " CXX " $@; +am__v_CXX_1 = CXXLD = $(CXX) CXXLINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \ $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CXXLD = $(am__v_CXXLD_$(V)) -am__v_CXXLD_ = $(am__v_CXXLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CXXLD_0 = @echo " CXXLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CXXLD = $(am__v_CXXLD_@AM_V@) +am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@) +am__v_CXXLD_0 = @echo " CXXLD " $@; +am__v_CXXLD_1 = SOURCES = $(libhdf5_hl_cpp_la_SOURCES) DIST_SOURCES = $(libhdf5_hl_cpp_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac HEADERS = $(include_HEADERS) ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -154,12 +194,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -421,7 +458,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 # Include src directory @@ -454,6 +491,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -483,6 +524,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -494,7 +536,6 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -502,6 +543,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -517,13 +560,15 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5_hl_cpp.la: $(libhdf5_hl_cpp_la_OBJECTS) $(libhdf5_hl_cpp_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5_hl_cpp.la: $(libhdf5_hl_cpp_la_OBJECTS) $(libhdf5_hl_cpp_la_DEPENDENCIES) $(EXTRA_libhdf5_hl_cpp_la_DEPENDENCIES) $(AM_V_CXXLD)$(libhdf5_hl_cpp_la_LINK) -rpath $(libdir) $(libhdf5_hl_cpp_la_OBJECTS) $(libhdf5_hl_cpp_la_LIBADD) $(LIBS) mostlyclean-compile: @@ -537,26 +582,23 @@ distclean-compile: .cpp.o: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $< .cpp.obj: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` .cpp.lo: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(LTCXXCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -565,8 +607,11 @@ clean-libtool: -rm -rf .libs _libs install-includeHEADERS: $(include_HEADERS) @$(NORMAL_INSTALL) - test -z "$(includedir)" || $(MKDIR_P) "$(DESTDIR)$(includedir)" @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(includedir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(includedir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ echo "$$d$$p"; \ @@ -580,9 +625,7 @@ uninstall-includeHEADERS: @$(NORMAL_UNINSTALL) @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ - test -n "$$files" || exit 0; \ - echo " ( cd '$(DESTDIR)$(includedir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(includedir)" && rm -f $$files + dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir) ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -633,6 +676,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -684,10 +741,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -773,8 +835,8 @@ uninstall-am: uninstall-includeHEADERS uninstall-libLTLIBRARIES .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-generic clean-libLTLIBRARIES clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-generic clean-libLTLIBRARIES clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -817,7 +879,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -843,7 +905,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -867,7 +929,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -877,7 +939,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -967,7 +1029,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -997,7 +1059,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in index 4c84e4c..0213f38 100644 --- a/hl/c++/test/Makefile.in +++ b/hl/c++/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # HDF5-C++ Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,16 +67,17 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am # Shared C++ libraries aren't universally supported. @CXX_SHARED_CONDITIONAL_FALSE@am__append_1 = -static check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = hl/c++/test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -73,9 +90,22 @@ ptableTest_OBJECTS = $(am_ptableTest_OBJECTS) ptableTest_LDADD = $(LDADD) ptableTest_DEPENDENCIES = $(LIBH5CPP_HL) $(LIBH5_HL) $(LIBH5CPP) \ $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -86,30 +116,33 @@ LTCXXCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CXXFLAGS) $(CXXFLAGS) -AM_V_CXX = $(am__v_CXX_$(V)) -am__v_CXX_ = $(am__v_CXX_$(AM_DEFAULT_VERBOSITY)) -am__v_CXX_0 = @echo " CXX " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CXX = $(am__v_CXX_@AM_V@) +am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@) +am__v_CXX_0 = @echo " CXX " $@; +am__v_CXX_1 = CXXLD = $(CXX) CXXLINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \ $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CXXLD = $(am__v_CXXLD_$(V)) -am__v_CXXLD_ = $(am__v_CXXLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CXXLD_0 = @echo " CXXLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CXXLD = $(am__v_CXXLD_@AM_V@) +am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@) +am__v_CXXLD_0 = @echo " CXXLD " $@; +am__v_CXXLD_1 = SOURCES = $(ptableTest_SOURCES) DIST_SOURCES = $(ptableTest_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -127,12 +160,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -416,6 +446,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -445,6 +479,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -463,7 +498,7 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -ptableTest$(EXEEXT): $(ptableTest_OBJECTS) $(ptableTest_DEPENDENCIES) +ptableTest$(EXEEXT): $(ptableTest_OBJECTS) $(ptableTest_DEPENDENCIES) $(EXTRA_ptableTest_DEPENDENCIES) @rm -f ptableTest$(EXEEXT) $(AM_V_CXXLD)$(CXXLINK) $(ptableTest_OBJECTS) $(ptableTest_LDADD) $(LIBS) @@ -478,26 +513,23 @@ distclean-compile: .cpp.o: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $< .cpp.obj: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'` .cpp.lo: @am__fastdepCXX_TRUE@ $(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCXX_FALSE@ $(AM_V_CXX) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $< +@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(LTCXXCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -554,6 +586,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -603,10 +649,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -692,8 +743,8 @@ uninstall-am: .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-checkPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-checkPROGRAMS clean-generic clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -721,7 +772,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -747,7 +798,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -771,7 +822,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -781,7 +832,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -871,7 +922,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -901,7 +952,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am index ae65a3b..1c51f05 100644 --- a/hl/examples/Makefile.am +++ b/hl/examples/Makefile.am @@ -22,7 +22,7 @@ include $(top_srcdir)/config/commence.am if BUILD_PARALLEL_CONDITIONAL - TEST_PROG_PARA = + EXAMPLE_PROG_PARA = endif # Example directory @@ -34,7 +34,7 @@ EXAMPLETOPDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. # Use the boilerplate in config/examples.am instead. -TEST_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \ +EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \ ex_image1 ex_image2 \ ex_table_01 ex_table_02 ex_table_03 ex_table_04 \ ex_table_05 ex_table_06 ex_table_07 ex_table_08 \ diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in index f8b3dd2..1794e38 100644 --- a/hl/examples/Makefile.in +++ b/hl/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,31 +71,45 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/run-hlc-ex.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/run-hlc-ex.sh.in $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am TESTS = subdir = hl/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-hlc-ex.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -97,12 +127,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -360,7 +387,7 @@ TRACE = perl $(top_srcdir)/bin/trace # .chklog files are output from those tests. # *.clog are from the MPE option. CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = +@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = # Example directory # Note: no '/' after DESTDIR. Explanation in commence.am @@ -371,7 +398,7 @@ EXAMPLETOPDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. # Use the boilerplate in config/examples.am instead. -TEST_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \ +EXAMPLE_PROG = ex_lite1 ex_lite2 ex_lite3 ptExampleFL ptExampleVL \ ex_image1 ex_image2 \ ex_table_01 ex_table_02 ex_table_03 ex_table_04 \ ex_table_05 ex_table_06 ex_table_07 ex_table_08 \ @@ -394,12 +421,11 @@ INSTALL_TOP_SCRIPT_FILES = run-hl-ex.sh # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -412,6 +438,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -440,6 +470,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -463,6 +494,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -509,10 +542,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -721,7 +759,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -747,7 +785,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -771,7 +809,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -781,7 +819,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -871,7 +909,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -901,7 +939,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in index 19d6b62..6fe288c 100644 --- a/hl/fortran/Makefile.in +++ b/hl/fortran/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # # HDF5 High-Level Makefile(.in) VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,24 +71,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = hl/fortran ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -82,6 +105,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -89,8 +117,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ dir0=`pwd`; \ @@ -117,7 +147,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -135,12 +165,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -412,6 +439,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -440,6 +471,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -457,12 +489,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -472,7 +504,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -486,37 +522,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -525,6 +530,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -588,6 +597,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -623,13 +646,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -665,10 +685,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -748,22 +773,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installcheck-local installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - mostlyclean mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags tags-recursive \ - uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installcheck-local installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -797,7 +823,7 @@ check-clean :: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -823,7 +849,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -847,7 +873,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -857,7 +883,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -947,7 +973,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -977,7 +1003,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/fortran/examples/Makefile.am b/hl/fortran/examples/Makefile.am index 4286fe3..f94f031 100644 --- a/hl/fortran/examples/Makefile.am +++ b/hl/fortran/examples/Makefile.am @@ -23,7 +23,7 @@ include $(top_srcdir)/config/commence.am # Compile parallel fortran examples only if parallel is enabled if BUILD_PARALLEL_CONDITIONAL - TEST_PROG_PARA= + EXAMPLE_PROG_PARA= endif # These are the programs that 'make all' or 'make tests' will build and @@ -31,7 +31,7 @@ endif # be run. # We don't tell automake about these programs so that it doesn't try to # compile them with the regular fortran compiler. -TEST_PROG=exlite ex_ds1 +EXAMPLE_PROG=exlite ex_ds1 # List files to be installed here INSTALL_FILES= exlite.f90 ex_ds1.f90 diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in index e8028aa..7dd855b 100644 --- a/hl/fortran/examples/Makefile.in +++ b/hl/fortran/examples/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ # built using h5cc (or h5fc, etc.) instead of the standard compilers. # This creates some extra work for us. VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -56,31 +72,45 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/run-hlfortran-ex.sh.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/examples.am TESTS = subdir = hl/fortran/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = run-hlfortran-ex.sh CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -98,12 +128,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -363,14 +390,14 @@ TRACE = perl $(top_srcdir)/bin/trace CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # Compile parallel fortran examples only if parallel is enabled -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = +@BUILD_PARALLEL_CONDITIONAL_TRUE@EXAMPLE_PROG_PARA = # These are the programs that 'make all' or 'make tests' will build and # that 'make check' will run. List them in the order in which they should # be run. # We don't tell automake about these programs so that it doesn't try to # compile them with the regular fortran compiler. -TEST_PROG = exlite ex_ds1 +EXAMPLE_PROG = exlite ex_ds1 # List files to be installed here INSTALL_FILES = exlite.f90 ex_ds1.f90 @@ -386,12 +413,11 @@ EXAMPLEDIR = ${DESTDIR}$(exec_prefix)/share/hdf5_examples/hl/fortran # Assume that all tests in this directory are examples, and tell # conclude.am when to build them. -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o -CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) +CLEANFILES = $(EXAMPLE_PROG) $(EXAMPLE_PROG_PARA) # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -404,6 +430,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -432,6 +462,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -455,6 +486,8 @@ TAGS: ctags: CTAGS CTAGS: +cscope cscopelist: + distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ @@ -501,10 +534,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -684,7 +722,7 @@ installcheck-local: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -710,7 +748,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -734,7 +772,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -744,7 +782,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -834,7 +872,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -864,7 +902,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt index b6f6d08..ec54d8c 100644 --- a/hl/fortran/src/CMakeLists.txt +++ b/hl/fortran/src/CMakeLists.txt @@ -97,7 +97,7 @@ ENDIF (WIN32 AND NOT CYGWIN) IF (HDF5_EXPORTED_TARGETS) INSTALL_TARGET_PDB (${HDF5_HL_F90_C_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} hlfortlibraries) - INSTALL_TARGET_PDB (${HDF5_HL_F90_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} hlfortlibraries) + #INSTALL_TARGET_PDB (${HDF5_HL_F90_LIB_TARGET} ${HDF5_INSTALL_LIB_DIR} hlfortlibraries) INSTALL ( TARGETS diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in index aeea150..4443e72 100644 --- a/hl/fortran/src/Makefile.in +++ b/hl/fortran/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # HDF5 High-Level Fortran Makefile(.in) VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,6 +68,7 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am @@ -63,7 +80,7 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ TESTS = subdir = hl/fortran/src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -91,19 +108,38 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" LTLIBRARIES = $(lib_LTLIBRARIES) libhdf5hl_fortran_la_DEPENDENCIES = $(LIBH5_HL) $(LIBH5F) am_libhdf5hl_fortran_la_OBJECTS = H5DSfc.lo H5LTfc.lo H5IMfc.lo \ H5IMcc.lo H5TBfc.lo H5DSff.lo H5LTff.lo H5IMff.lo H5TBff.lo libhdf5hl_fortran_la_OBJECTS = $(am_libhdf5hl_fortran_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5hl_fortran_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=FC \ $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(FCLD) \ $(AM_FCFLAGS) $(FCFLAGS) $(libhdf5hl_fortran_la_LDFLAGS) \ $(LDFLAGS) -o $@ +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -114,43 +150,48 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = FCCOMPILE = $(FC) $(AM_FCFLAGS) $(FCFLAGS) LTFCCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS) -AM_V_FC = $(am__v_FC_$(V)) -am__v_FC_ = $(am__v_FC_$(AM_DEFAULT_VERBOSITY)) -am__v_FC_0 = @echo " FC " $@; +AM_V_FC = $(am__v_FC_@AM_V@) +am__v_FC_ = $(am__v_FC_@AM_DEFAULT_V@) +am__v_FC_0 = @echo " FC " $@; +am__v_FC_1 = FCLD = $(FC) FCLINK = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_FCLD = $(am__v_FCLD_$(V)) -am__v_FCLD_ = $(am__v_FCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_FCLD_0 = @echo " FCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_FCLD = $(am__v_FCLD_@AM_V@) +am__v_FCLD_ = $(am__v_FCLD_@AM_DEFAULT_V@) +am__v_FCLD_0 = @echo " FCLD " $@; +am__v_FCLD_1 = SOURCES = $(libhdf5hl_fortran_la_SOURCES) DIST_SOURCES = $(libhdf5hl_fortran_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -169,12 +210,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -436,7 +474,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \ -I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src @@ -472,6 +510,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -501,6 +543,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -512,7 +555,6 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -520,6 +562,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -535,13 +579,15 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5hl_fortran.la: $(libhdf5hl_fortran_la_OBJECTS) $(libhdf5hl_fortran_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5hl_fortran.la: $(libhdf5hl_fortran_la_OBJECTS) $(libhdf5hl_fortran_la_DEPENDENCIES) $(EXTRA_libhdf5hl_fortran_la_DEPENDENCIES) $(AM_V_FCLD)$(libhdf5hl_fortran_la_LINK) -rpath $(libdir) $(libhdf5hl_fortran_la_OBJECTS) $(libhdf5hl_fortran_la_LIBADD) $(LIBS) mostlyclean-compile: @@ -559,38 +605,32 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< .f90.o: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< .f90.obj: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` .f90.lo: - $(AM_V_FC) @AM_BACKSLASH@ - $(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< mostlyclean-libtool: -rm -f *.lo @@ -647,6 +687,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -698,10 +752,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -789,7 +848,7 @@ uninstall-am: uninstall-libLTLIBRARIES uninstall-local .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-generic clean-libLTLIBRARIES clean-libtool \ - clean-local ctags distclean distclean-compile \ + clean-local cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-local \ distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am \ @@ -864,7 +923,7 @@ H5TBff.lo: $(srcdir)/H5TBff.f90 # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -890,7 +949,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -914,7 +973,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -924,7 +983,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1014,7 +1073,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1044,7 +1103,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in index 707a32d..7e69b79 100644 --- a/hl/fortran/test/Makefile.in +++ b/hl/fortran/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # # HDF5 High-Level Fortran Makefile(.in) VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,6 +67,7 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am @@ -59,10 +76,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ # of the HDF5 library. We do this by passing the -static flag to the linker. @FORTRAN_SHARED_CONDITIONAL_FALSE@am__append_1 = -static check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = hl/fortran/test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -75,9 +92,10 @@ am_tstds_OBJECTS = tstds.$(OBJEXT) tstds_OBJECTS = $(am_tstds_OBJECTS) tstds_LDADD = $(LDADD) tstds_DEPENDENCIES = $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am_tstimage_OBJECTS = tstimage.$(OBJEXT) tstimage_OBJECTS = $(am_tstimage_OBJECTS) tstimage_LDADD = $(LDADD) @@ -90,36 +108,51 @@ am_tsttable_OBJECTS = tsttable.$(OBJEXT) tsttable_OBJECTS = $(am_tsttable_OBJECTS) tsttable_LDADD = $(LDADD) tsttable_DEPENDENCIES = $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src FCCOMPILE = $(FC) $(AM_FCFLAGS) $(FCFLAGS) LTFCCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(FC) $(AM_FCFLAGS) $(FCFLAGS) -AM_V_FC = $(am__v_FC_$(V)) -am__v_FC_ = $(am__v_FC_$(AM_DEFAULT_VERBOSITY)) -am__v_FC_0 = @echo " FC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_FC = $(am__v_FC_@AM_V@) +am__v_FC_ = $(am__v_FC_@AM_DEFAULT_V@) +am__v_FC_0 = @echo " FC " $@; +am__v_FC_1 = FCLD = $(FC) FCLINK = $(LIBTOOL) $(AM_V_lt) --tag=FC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(FCLD) $(AM_FCFLAGS) $(FCFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_FCLD = $(am__v_FCLD_$(V)) -am__v_FCLD_ = $(am__v_FCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_FCLD_0 = @echo " FCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_FCLD = $(am__v_FCLD_@AM_V@) +am__v_FCLD_ = $(am__v_FCLD_@AM_DEFAULT_V@) +am__v_FCLD_0 = @echo " FCLD " $@; +am__v_FCLD_1 = SOURCES = $(tstds_SOURCES) $(tstimage_SOURCES) $(tstlite_SOURCES) \ $(tsttable_SOURCES) DIST_SOURCES = $(tstds_SOURCES) $(tstimage_SOURCES) $(tstlite_SOURCES) \ $(tsttable_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -141,12 +174,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ $(am__append_1) AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -433,6 +463,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -462,6 +496,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -480,16 +515,16 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -tstds$(EXEEXT): $(tstds_OBJECTS) $(tstds_DEPENDENCIES) +tstds$(EXEEXT): $(tstds_OBJECTS) $(tstds_DEPENDENCIES) $(EXTRA_tstds_DEPENDENCIES) @rm -f tstds$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(tstds_OBJECTS) $(tstds_LDADD) $(LIBS) -tstimage$(EXEEXT): $(tstimage_OBJECTS) $(tstimage_DEPENDENCIES) +tstimage$(EXEEXT): $(tstimage_OBJECTS) $(tstimage_DEPENDENCIES) $(EXTRA_tstimage_DEPENDENCIES) @rm -f tstimage$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(tstimage_OBJECTS) $(tstimage_LDADD) $(LIBS) -tstlite$(EXEEXT): $(tstlite_OBJECTS) $(tstlite_DEPENDENCIES) +tstlite$(EXEEXT): $(tstlite_OBJECTS) $(tstlite_DEPENDENCIES) $(EXTRA_tstlite_DEPENDENCIES) @rm -f tstlite$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(tstlite_OBJECTS) $(tstlite_LDADD) $(LIBS) -tsttable$(EXEEXT): $(tsttable_OBJECTS) $(tsttable_DEPENDENCIES) +tsttable$(EXEEXT): $(tsttable_OBJECTS) $(tsttable_DEPENDENCIES) $(EXTRA_tsttable_DEPENDENCIES) @rm -f tsttable$(EXEEXT) $(AM_V_FCLD)$(FCLINK) $(tsttable_OBJECTS) $(tsttable_LDADD) $(LIBS) @@ -500,16 +535,13 @@ distclean-compile: -rm -f *.tab.c .f90.o: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< .f90.obj: - $(AM_V_FC) @AM_BACKSLASH@ - $(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` + $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'` .f90.lo: - $(AM_V_FC) @AM_BACKSLASH@ - $(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< + $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $< mostlyclean-libtool: -rm -f *.lo @@ -566,6 +598,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -615,10 +661,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -702,8 +753,8 @@ uninstall-am: .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-checkPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-checkPROGRAMS clean-generic clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -731,7 +782,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -757,7 +808,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -781,7 +832,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -791,7 +842,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -881,7 +932,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -911,7 +962,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/src/H5IM.c b/hl/src/H5IM.c index 93d2b3f..e55aaf8 100644 --- a/hl/src/H5IM.c +++ b/hl/src/H5IM.c @@ -564,7 +564,7 @@ herr_t H5IMlink_palette( hid_t loc_id, /* close */ if(H5Sclose(asid) < 0) goto out; - if ( H5Tclose( atid ) < 0) + if(H5Tclose(atid) < 0) goto out; if(H5Aclose(aid) < 0) goto out; @@ -630,6 +630,8 @@ herr_t H5IMlink_palette( hid_t loc_id, /* close */ if(H5Sclose(asid) < 0) goto out; + if(H5Tclose(atid) < 0) + goto out; if(H5Aclose(aid) < 0) goto out; diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in index 429ff08..5da7bd2 100644 --- a/hl/src/Makefile.in +++ b/hl/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,13 +69,15 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(include_HEADERS) $(srcdir)/Makefile.am \ - $(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \ + $(srcdir)/Makefile.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am COPYING TESTS = subdir = hl/src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -87,18 +105,37 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(includedir)" LTLIBRARIES = $(lib_LTLIBRARIES) libhdf5_hl_la_DEPENDENCIES = $(LIBHDF5) am_libhdf5_hl_la_OBJECTS = H5DS.lo H5IM.lo H5LT.lo H5LTanalyze.lo \ H5LTparse.lo H5PT.lo H5TB.lo libhdf5_hl_la_OBJECTS = $(am_libhdf5_hl_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5_hl_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libhdf5_hl_la_LDFLAGS) $(LDFLAGS) -o $@ +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -109,31 +146,34 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(libhdf5_hl_la_SOURCES) DIST_SOURCES = $(libhdf5_hl_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac HEADERS = $(include_HEADERS) ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -153,12 +193,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -420,7 +457,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 # This library is our main target. @@ -449,6 +486,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -478,6 +519,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -489,7 +531,6 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -497,6 +538,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -512,13 +555,15 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5_hl.la: $(libhdf5_hl_la_OBJECTS) $(libhdf5_hl_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5_hl.la: $(libhdf5_hl_la_OBJECTS) $(libhdf5_hl_la_DEPENDENCIES) $(EXTRA_libhdf5_hl_la_DEPENDENCIES) $(AM_V_CCLD)$(libhdf5_hl_la_LINK) -rpath $(libdir) $(libhdf5_hl_la_OBJECTS) $(libhdf5_hl_la_LIBADD) $(LIBS) mostlyclean-compile: @@ -538,26 +583,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -566,8 +608,11 @@ clean-libtool: -rm -rf .libs _libs install-includeHEADERS: $(include_HEADERS) @$(NORMAL_INSTALL) - test -z "$(includedir)" || $(MKDIR_P) "$(DESTDIR)$(includedir)" @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(includedir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(includedir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ echo "$$d$$p"; \ @@ -581,9 +626,7 @@ uninstall-includeHEADERS: @$(NORMAL_UNINSTALL) @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ - test -n "$$files" || exit 0; \ - echo " ( cd '$(DESTDIR)$(includedir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(includedir)" && rm -f $$files + dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir) ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -634,6 +677,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -685,10 +742,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -774,8 +836,8 @@ uninstall-am: uninstall-includeHEADERS uninstall-libLTLIBRARIES .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-generic clean-libLTLIBRARIES clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-generic clean-libLTLIBRARIES clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -818,7 +880,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -844,7 +906,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -868,7 +930,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -878,7 +940,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -968,7 +1030,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -998,7 +1060,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in index be0338a..f98b2bc 100644 --- a/hl/test/Makefile.in +++ b/hl/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -35,6 +34,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -54,14 +70,16 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/H5srcdir_str.h.in $(srcdir)/Makefile.am \ - $(srcdir)/Makefile.in $(top_srcdir)/config/commence.am \ + $(srcdir)/Makefile.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING check_PROGRAMS = $(am__EXEEXT_1) @BUILD_ALL_CONDITIONAL_TRUE@noinst_PROGRAMS = $(am__EXEEXT_2) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = hl/test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -77,9 +95,10 @@ gen_test_ds_SOURCES = gen_test_ds.c gen_test_ds_OBJECTS = gen_test_ds.$(OBJEXT) gen_test_ds_LDADD = $(LDADD) gen_test_ds_DEPENDENCIES = $(LIBH5_HL) $(LIBH5TEST) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = test_ds_SOURCES = test_ds.c test_ds_OBJECTS = test_ds.$(OBJEXT) test_ds_LDADD = $(LDADD) @@ -104,6 +123,18 @@ test_table_SOURCES = test_table.c test_table_OBJECTS = test_table.$(OBJEXT) test_table_LDADD = $(LDADD) test_table_DEPENDENCIES = $(LIBH5_HL) $(LIBH5TEST) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -114,32 +145,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = gen_test_ds.c test_ds.c test_file_image.c test_image.c \ test_lite.c test_packet.c test_table.c DIST_SOURCES = gen_test_ds.c test_ds.c test_file_image.c test_image.c \ test_lite.c test_packet.c test_table.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -162,12 +196,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -456,6 +487,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -485,6 +520,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -514,25 +550,25 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -gen_test_ds$(EXEEXT): $(gen_test_ds_OBJECTS) $(gen_test_ds_DEPENDENCIES) +gen_test_ds$(EXEEXT): $(gen_test_ds_OBJECTS) $(gen_test_ds_DEPENDENCIES) $(EXTRA_gen_test_ds_DEPENDENCIES) @rm -f gen_test_ds$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_test_ds_OBJECTS) $(gen_test_ds_LDADD) $(LIBS) -test_ds$(EXEEXT): $(test_ds_OBJECTS) $(test_ds_DEPENDENCIES) +test_ds$(EXEEXT): $(test_ds_OBJECTS) $(test_ds_DEPENDENCIES) $(EXTRA_test_ds_DEPENDENCIES) @rm -f test_ds$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_ds_OBJECTS) $(test_ds_LDADD) $(LIBS) -test_file_image$(EXEEXT): $(test_file_image_OBJECTS) $(test_file_image_DEPENDENCIES) +test_file_image$(EXEEXT): $(test_file_image_OBJECTS) $(test_file_image_DEPENDENCIES) $(EXTRA_test_file_image_DEPENDENCIES) @rm -f test_file_image$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_file_image_OBJECTS) $(test_file_image_LDADD) $(LIBS) -test_image$(EXEEXT): $(test_image_OBJECTS) $(test_image_DEPENDENCIES) +test_image$(EXEEXT): $(test_image_OBJECTS) $(test_image_DEPENDENCIES) $(EXTRA_test_image_DEPENDENCIES) @rm -f test_image$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_image_OBJECTS) $(test_image_LDADD) $(LIBS) -test_lite$(EXEEXT): $(test_lite_OBJECTS) $(test_lite_DEPENDENCIES) +test_lite$(EXEEXT): $(test_lite_OBJECTS) $(test_lite_DEPENDENCIES) $(EXTRA_test_lite_DEPENDENCIES) @rm -f test_lite$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_lite_OBJECTS) $(test_lite_LDADD) $(LIBS) -test_packet$(EXEEXT): $(test_packet_OBJECTS) $(test_packet_DEPENDENCIES) +test_packet$(EXEEXT): $(test_packet_OBJECTS) $(test_packet_DEPENDENCIES) $(EXTRA_test_packet_DEPENDENCIES) @rm -f test_packet$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_packet_OBJECTS) $(test_packet_LDADD) $(LIBS) -test_table$(EXEEXT): $(test_table_OBJECTS) $(test_table_DEPENDENCIES) +test_table$(EXEEXT): $(test_table_OBJECTS) $(test_table_DEPENDENCIES) $(EXTRA_test_table_DEPENDENCIES) @rm -f test_table$(EXEEXT) $(AM_V_CCLD)$(LINK) $(test_table_OBJECTS) $(test_table_LDADD) $(LIBS) @@ -553,26 +589,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -629,6 +662,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -678,10 +725,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -768,17 +820,18 @@ uninstall-am: .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ - clean-noinstPROGRAMS ctags distclean distclean-compile \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags uninstall uninstall-am + clean-noinstPROGRAMS cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-libtool \ + distclean-tags distdir dvi dvi-am html html-am info info-am \ + install install-am install-data install-data-am install-dvi \ + install-dvi-am install-exec install-exec-am install-html \ + install-html-am install-info install-info-am install-man \ + install-pdf install-pdf-am install-ps install-ps-am \ + install-strip installcheck installcheck-am installdirs \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ + uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -796,7 +849,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -822,7 +875,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -846,7 +899,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -856,7 +909,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -946,7 +999,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -976,7 +1029,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/test/test_image.c b/hl/test/test_image.c index 3914a9f..4cef1b4 100644 --- a/hl/test/test_image.c +++ b/hl/test/test_image.c @@ -513,6 +513,7 @@ static int test_generate(void) FILE *f; const char *data_file = H5_get_srcdir_filename(DATA_FILE4); int i; + int retval = FAIL; /* create a file using default properties */ if ((fid=H5Fcreate(FILE3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) @@ -674,15 +675,17 @@ static int test_generate(void) if (H5Fclose(fid)<0) goto out; - return 0; + /* Indicate success */ + retval = 0; /* error zone, gracefully close */ out: + HDfree(data); H5E_BEGIN_TRY { H5Fclose(fid); } H5E_END_TRY; H5_FAILED(); - return FAIL; + return retval; } diff --git a/hl/tools/Makefile.am b/hl/tools/Makefile.am index 71eb149..5ef8a96 100644 --- a/hl/tools/Makefile.am +++ b/hl/tools/Makefile.am @@ -22,6 +22,6 @@ include $(top_srcdir)/config/commence.am # All subdirectories -SUBDIRS=gif2h5 +SUBDIRS=gif2h5 include $(top_srcdir)/config/conclude.am diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in index 08109fb..23baa17 100644 --- a/hl/tools/Makefile.in +++ b/hl/tools/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # Tools HDF5 Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,24 +67,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = hl/tools ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -78,6 +101,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -85,8 +113,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ @@ -114,7 +144,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -132,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -397,7 +424,7 @@ TRACE = perl $(top_srcdir)/bin/trace CHECK_CLEANFILES = *.chkexe *.chklog *.clog # All subdirectories -SUBDIRS = gif2h5 +SUBDIRS = gif2h5 # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -410,6 +437,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -438,6 +469,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -455,12 +487,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -470,7 +502,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -484,37 +520,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -523,6 +528,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -586,6 +595,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -621,13 +644,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -663,10 +683,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -746,21 +771,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs installdirs-am \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags tags-recursive uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am tags \ + tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -778,7 +805,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -804,7 +831,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -828,7 +855,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -838,7 +865,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -928,7 +955,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -958,7 +985,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/tools/gif2h5/Makefile.am b/hl/tools/gif2h5/Makefile.am index 895c75f..d1d416a 100644 --- a/hl/tools/gif2h5/Makefile.am +++ b/hl/tools/gif2h5/Makefile.am @@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src # These are our main targets, the tools -TEST_SCRIPT=$(srcdir)/h52giftest.sh +TEST_SCRIPT=h52giftest.sh check_SCRIPTS=$(TEST_SCRIPT) bin_PROGRAMS=gif2h5 h52gif diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in index c857fed..8b98276 100644 --- a/hl/tools/gif2h5/Makefile.in +++ b/hl/tools/gif2h5/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/h52giftest.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = gif2h5$(EXEEXT) h52gif$(EXEEXT) noinst_PROGRAMS = h52gifgentst$(EXEEXT) -TESTS = $(check_SCRIPTS) +TESTS = $(TEST_SCRIPT) subdir = hl/tools/gif2h5 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = h52giftest.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS) @@ -73,9 +91,10 @@ am_gif2h5_OBJECTS = gif2hdf.$(OBJEXT) gif2mem.$(OBJEXT) \ gif2h5_OBJECTS = $(am_gif2h5_OBJECTS) gif2h5_LDADD = $(LDADD) gif2h5_DEPENDENCIES = $(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = gif2h5_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(gif2h5_LDFLAGS) $(LDFLAGS) -o $@ @@ -90,6 +109,18 @@ am_h52gifgentst_OBJECTS = h52gifgentst.$(OBJEXT) h52gifgentst_OBJECTS = $(am_h52gifgentst_OBJECTS) h52gifgentst_LDADD = $(LDADD) h52gifgentst_DEPENDENCIES = $(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -100,31 +131,34 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(gif2h5_SOURCES) $(h52gif_SOURCES) $(h52gifgentst_SOURCES) DIST_SOURCES = $(gif2h5_SOURCES) $(h52gif_SOURCES) \ $(h52gifgentst_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -142,12 +176,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -410,7 +441,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.gif INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src # These are our main targets, the tools -TEST_SCRIPT = $(srcdir)/h52giftest.sh +TEST_SCRIPT = h52giftest.sh check_SCRIPTS = $(TEST_SCRIPT) # Add h52gif and gif2h5 specific linker flags here @@ -435,6 +466,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -464,6 +499,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -473,10 +509,15 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +h52giftest.sh: $(top_builddir)/config.status $(srcdir)/h52giftest.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -525,13 +566,13 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -gif2h5$(EXEEXT): $(gif2h5_OBJECTS) $(gif2h5_DEPENDENCIES) +gif2h5$(EXEEXT): $(gif2h5_OBJECTS) $(gif2h5_DEPENDENCIES) $(EXTRA_gif2h5_DEPENDENCIES) @rm -f gif2h5$(EXEEXT) $(AM_V_CCLD)$(gif2h5_LINK) $(gif2h5_OBJECTS) $(gif2h5_LDADD) $(LIBS) -h52gif$(EXEEXT): $(h52gif_OBJECTS) $(h52gif_DEPENDENCIES) +h52gif$(EXEEXT): $(h52gif_OBJECTS) $(h52gif_DEPENDENCIES) $(EXTRA_h52gif_DEPENDENCIES) @rm -f h52gif$(EXEEXT) $(AM_V_CCLD)$(h52gif_LINK) $(h52gif_OBJECTS) $(h52gif_LDADD) $(LIBS) -h52gifgentst$(EXEEXT): $(h52gifgentst_OBJECTS) $(h52gifgentst_DEPENDENCIES) +h52gifgentst$(EXEEXT): $(h52gifgentst_OBJECTS) $(h52gifgentst_DEPENDENCIES) $(EXTRA_h52gifgentst_DEPENDENCIES) @rm -f h52gifgentst$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h52gifgentst_OBJECTS) $(h52gifgentst_LDADD) $(LIBS) @@ -553,26 +594,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -629,6 +667,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -681,10 +733,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -771,18 +828,19 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-generic clean-libtool \ - clean-noinstPROGRAMS ctags distclean distclean-compile \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-binPROGRAMS install-data install-data-am install-dvi \ - install-dvi-am install-exec install-exec-am install-html \ - install-html-am install-info install-info-am install-man \ - install-pdf install-pdf-am install-ps install-ps-am \ - install-strip installcheck installcheck-am installdirs \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ - uninstall-am uninstall-binPROGRAMS + clean-noinstPROGRAMS cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-libtool \ + distclean-tags distdir dvi dvi-am html html-am info info-am \ + install install-am install-binPROGRAMS install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installdirs maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-compile \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags uninstall uninstall-am \ + uninstall-binPROGRAMS # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -800,7 +858,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -826,7 +884,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -850,7 +908,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -860,7 +918,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -950,7 +1008,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -980,7 +1038,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/hl/tools/gif2h5/h52giftest.sh b/hl/tools/gif2h5/h52giftest.sh.in index 186b369..186b369 100644 --- a/hl/tools/gif2h5/h52giftest.sh +++ b/hl/tools/gif2h5/h52giftest.sh.in diff --git a/m4/libtool.m4 b/m4/libtool.m4 index d812584..44e0ecff 100644 --- a/m4/libtool.m4 +++ b/m4/libtool.m4 @@ -1,8 +1,8 @@ # libtool.m4 - Configure libtool for the host system. -*-Autoconf-*- # # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is free software; the Free Software Foundation gives @@ -11,8 +11,8 @@ m4_define([_LT_COPYING], [dnl # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, -# 2006, 2007, 2008, 2009, 2010 Free Software Foundation, -# Inc. +# 2006, 2007, 2008, 2009, 2010, 2011 Free Software +# Foundation, Inc. # Written by Gordon Matzigkeit, 1996 # # This file is part of GNU Libtool. @@ -146,6 +146,8 @@ AC_REQUIRE([AC_CANONICAL_BUILD])dnl AC_REQUIRE([_LT_PREPARE_SED_QUOTE_VARS])dnl AC_REQUIRE([_LT_PROG_ECHO_BACKSLASH])dnl +_LT_DECL([], [PATH_SEPARATOR], [1], [The PATH separator for the build system])dnl +dnl _LT_DECL([], [host_alias], [0], [The host system])dnl _LT_DECL([], [host], [0])dnl _LT_DECL([], [host_os], [0])dnl @@ -637,7 +639,7 @@ m4_ifset([AC_PACKAGE_NAME], [AC_PACKAGE_NAME ])config.lt[]dnl m4_ifset([AC_PACKAGE_VERSION], [ AC_PACKAGE_VERSION]) configured by $[0], generated by m4_PACKAGE_STRING. -Copyright (C) 2010 Free Software Foundation, Inc. +Copyright (C) 2011 Free Software Foundation, Inc. This config.lt script is free software; the Free Software Foundation gives unlimited permision to copy, distribute and modify it." @@ -801,6 +803,7 @@ AC_DEFUN([LT_LANG], m4_case([$1], [C], [_LT_LANG(C)], [C++], [_LT_LANG(CXX)], + [Go], [_LT_LANG(GO)], [Java], [_LT_LANG(GCJ)], [Fortran 77], [_LT_LANG(F77)], [Fortran], [_LT_LANG(FC)], @@ -822,6 +825,31 @@ m4_defun([_LT_LANG], ])# _LT_LANG +m4_ifndef([AC_PROG_GO], [ +############################################################ +# NOTE: This macro has been submitted for inclusion into # +# GNU Autoconf as AC_PROG_GO. When it is available in # +# a released version of Autoconf we should remove this # +# macro and use it instead. # +############################################################ +m4_defun([AC_PROG_GO], +[AC_LANG_PUSH(Go)dnl +AC_ARG_VAR([GOC], [Go compiler command])dnl +AC_ARG_VAR([GOFLAGS], [Go compiler flags])dnl +_AC_ARG_VAR_LDFLAGS()dnl +AC_CHECK_TOOL(GOC, gccgo) +if test -z "$GOC"; then + if test -n "$ac_tool_prefix"; then + AC_CHECK_PROG(GOC, [${ac_tool_prefix}gccgo], [${ac_tool_prefix}gccgo]) + fi +fi +if test -z "$GOC"; then + AC_CHECK_PROG(GOC, gccgo, gccgo, false) +fi +])#m4_defun +])#m4_ifndef + + # _LT_LANG_DEFAULT_CONFIG # ----------------------- m4_defun([_LT_LANG_DEFAULT_CONFIG], @@ -852,6 +880,10 @@ AC_PROVIDE_IFELSE([AC_PROG_GCJ], m4_ifdef([LT_PROG_GCJ], [m4_define([LT_PROG_GCJ], defn([LT_PROG_GCJ])[LT_LANG(GCJ)])])])])]) +AC_PROVIDE_IFELSE([AC_PROG_GO], + [LT_LANG(GO)], + [m4_define([AC_PROG_GO], defn([AC_PROG_GO])[LT_LANG(GO)])]) + AC_PROVIDE_IFELSE([LT_PROG_RC], [LT_LANG(RC)], [m4_define([LT_PROG_RC], defn([LT_PROG_RC])[LT_LANG(RC)])]) @@ -954,7 +986,13 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err _lt_result=$? - if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then + # If there is a non-empty error log, and "single_module" + # appears in it, assume the flag caused a linker warning + if test -s conftest.err && $GREP single_module conftest.err; then + cat conftest.err >&AS_MESSAGE_LOG_FD + # Otherwise, if the output was created with a 0 exit code from + # the compiler, it worked. + elif test -f libconftest.dylib && test $_lt_result -eq 0; then lt_cv_apple_cc_single_mod=yes else cat conftest.err >&AS_MESSAGE_LOG_FD @@ -962,6 +1000,7 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ rm -rf libconftest.dylib* rm -f conftest.* fi]) + AC_CACHE_CHECK([for -exported_symbols_list linker flag], [lt_cv_ld_exported_symbols_list], [lt_cv_ld_exported_symbols_list=no @@ -973,6 +1012,7 @@ m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[ [lt_cv_ld_exported_symbols_list=no]) LDFLAGS="$save_LDFLAGS" ]) + AC_CACHE_CHECK([for -force_load linker flag],[lt_cv_ld_force_load], [lt_cv_ld_force_load=no cat > conftest.c << _LT_EOF @@ -990,7 +1030,9 @@ _LT_EOF echo "$LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a" >&AS_MESSAGE_LOG_FD $LTCC $LTCFLAGS $LDFLAGS -o conftest conftest.c -Wl,-force_load,./libconftest.a 2>conftest.err _lt_result=$? - if test -f conftest && test ! -s conftest.err && test $_lt_result = 0 && $GREP forced_load conftest 2>&1 >/dev/null; then + if test -s conftest.err && $GREP force_load conftest.err; then + cat conftest.err >&AS_MESSAGE_LOG_FD + elif test -f conftest && test $_lt_result -eq 0 && $GREP forced_load conftest >/dev/null 2>&1 ; then lt_cv_ld_force_load=yes else cat conftest.err >&AS_MESSAGE_LOG_FD @@ -1035,8 +1077,8 @@ _LT_EOF ]) -# _LT_DARWIN_LINKER_FEATURES -# -------------------------- +# _LT_DARWIN_LINKER_FEATURES([TAG]) +# --------------------------------- # Checks for linker and compiler features on darwin m4_defun([_LT_DARWIN_LINKER_FEATURES], [ @@ -1047,6 +1089,8 @@ m4_defun([_LT_DARWIN_LINKER_FEATURES], _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported if test "$lt_cv_ld_force_load" = "yes"; then _LT_TAGVAR(whole_archive_flag_spec, $1)='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' + m4_case([$1], [F77], [_LT_TAGVAR(compiler_needs_object, $1)=yes], + [FC], [_LT_TAGVAR(compiler_needs_object, $1)=yes]) else _LT_TAGVAR(whole_archive_flag_spec, $1)='' fi @@ -1330,14 +1374,27 @@ s390*-*linux*|s390*-*tpf*|sparc*-*linux*) CFLAGS="$SAVE_CFLAGS" fi ;; -sparc*-*solaris*) +*-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if AC_TRY_EVAL(ac_compile); then case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in - yes*) LD="${LD-ld} -m elf64_sparc" ;; + yes*) + case $host in + i?86-*-solaris*) + LD="${LD-ld} -m elf_x86_64" + ;; + sparc*-*-solaris*) + LD="${LD-ld} -m elf64_sparc" + ;; + esac + # GNU ld 2.21 introduced _sol2 emulations. Use them if available. + if ${LD-ld} -V | grep _sol2 >/dev/null 2>&1; then + LD="${LD-ld}_sol2" + fi + ;; *) if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then LD="${LD-ld} -64" @@ -1414,13 +1471,13 @@ old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$tool_oldlib" ;; *) - old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib" + old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$tool_oldlib" ;; esac - old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib" + old_archive_cmds="$old_archive_cmds~\$RANLIB \$tool_oldlib" fi case $host_os in @@ -1600,6 +1657,11 @@ AC_CACHE_VAL([lt_cv_sys_max_cmd_len], [dnl lt_cv_sys_max_cmd_len=196608 ;; + os2*) + # The test takes a long time on OS/2. + lt_cv_sys_max_cmd_len=8192 + ;; + osf*) # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not @@ -1639,7 +1701,7 @@ AC_CACHE_VAL([lt_cv_sys_max_cmd_len], [dnl # If test is not a shell built-in, we'll probably end up computing a # maximum length that is only half of the actual maximum length, but # we can't tell. - while { test "X"`func_fallback_echo "$teststring$teststring" 2>/dev/null` \ + while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \ = "X$teststring$teststring"; } >/dev/null 2>&1 && test $i != 17 # 1/2 MB should be enough do @@ -2185,7 +2247,7 @@ need_version=unknown case $host_os in aix3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' shlibpath_var=LIBPATH @@ -2194,7 +2256,7 @@ aix3*) ;; aix[[4-9]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no hardcode_into_libs=yes @@ -2259,7 +2321,7 @@ beos*) ;; bsdi[[45]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' @@ -2398,7 +2460,7 @@ m4_if([$1], [],[ ;; dgux*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' @@ -2406,10 +2468,6 @@ dgux*) shlibpath_var=LD_LIBRARY_PATH ;; -freebsd1*) - dynamic_linker=no - ;; - freebsd* | dragonfly*) # DragonFly does not have aout. When/if they implement a new # versioning mechanism, adjust this. @@ -2417,7 +2475,7 @@ freebsd* | dragonfly*) objformat=`/usr/bin/objformat` else case $host_os in - freebsd[[123]]*) objformat=aout ;; + freebsd[[23]].*) objformat=aout ;; *) objformat=elf ;; esac fi @@ -2435,7 +2493,7 @@ freebsd* | dragonfly*) esac shlibpath_var=LD_LIBRARY_PATH case $host_os in - freebsd2*) + freebsd2.*) shlibpath_overrides_runpath=yes ;; freebsd3.[[01]]* | freebsdelf3.[[01]]*) @@ -2455,17 +2513,18 @@ freebsd* | dragonfly*) ;; gnu*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH + shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; haiku*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no dynamic_linker="$host_os runtime_loader" @@ -2526,7 +2585,7 @@ hpux9* | hpux10* | hpux11*) ;; interix[[3-9]]*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' @@ -2542,7 +2601,7 @@ irix5* | irix6* | nonstopux*) nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; @@ -2579,9 +2638,9 @@ linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -2644,7 +2703,7 @@ netbsd*) ;; newsos6) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes @@ -2713,7 +2772,7 @@ rdos*) ;; solaris*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -2738,7 +2797,7 @@ sunos4*) ;; sysv4 | sysv4.3*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -2762,7 +2821,7 @@ sysv4 | sysv4.3*) sysv4*MP*) if test -d /usr/nec ;then - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH @@ -2793,7 +2852,7 @@ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' @@ -2803,7 +2862,7 @@ tpf*) ;; uts4*) - version_type=linux + version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH @@ -3225,7 +3284,7 @@ irix5* | irix6* | nonstopux*) lt_cv_deplibs_check_method=pass_all ;; -# This must be Linux ELF. +# This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) lt_cv_deplibs_check_method=pass_all ;; @@ -3645,6 +3704,7 @@ for ac_symprfx in "" "_"; do # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK ['"\ " {last_section=section; section=\$ 3};"\ +" /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ @@ -4229,7 +4289,9 @@ m4_if([$1], [CXX], [ case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Xlinker ' - _LT_TAGVAR(lt_prog_compiler_pic, $1)='-Xcompiler -fPIC' + if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then + _LT_TAGVAR(lt_prog_compiler_pic, $1)="-Xcompiler $_LT_TAGVAR(lt_prog_compiler_pic, $1)" + fi ;; esac else @@ -4321,18 +4383,33 @@ m4_if([$1], [CXX], [ ;; *) case `$CC -V 2>&1 | sed 5q` in - *Sun\ F* | *Sun*Fortran*) + *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [[1-7]].* | *Sun*Fortran*\ 8.[[0-3]]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='' ;; + *Sun\ F* | *Sun*Fortran*) + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' + ;; *Sun\ C*) # Sun C 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' ;; + *Intel*\ [[CF]]*Compiler*) + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' + ;; + *Portland\ Group*) + _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' + _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' + _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' + ;; esac ;; esac @@ -4492,7 +4569,9 @@ m4_if([$1], [CXX], [ ;; cygwin* | mingw* | cegcc*) case $cc_basename in - cl*) ;; + cl*) + _LT_TAGVAR(exclude_expsyms, $1)='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' + ;; *) _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1 DATA/;s/^.*[[ ]]__nm__\([[^ ]]*\)[[ ]][[^ ]]*/\1 DATA/;/^I[[ ]]/d;/^[[AITW]][[ ]]/s/.* //'\'' | sort | uniq > $export_symbols' _LT_TAGVAR(exclude_expsyms, $1)=['[_]+GLOBAL_OFFSET_TABLE_|[_]+GLOBAL__[FID]_.*|[_]+head_[A-Za-z0-9_]+_dll|[A-Za-z0-9_]+_dll_iname'] @@ -4517,7 +4596,6 @@ m4_if([$1], [CXX], [ _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported @@ -4768,8 +4846,7 @@ _LT_EOF xlf* | bgf* | bgxlf* | mpixlf*) # IBM XL Fortran 10.1 on PPC cannot create shared libs itself _LT_TAGVAR(whole_archive_flag_spec, $1)='--whole-archive$convenience --no-whole-archive' - _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='-rpath $libdir' + _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_TAGVAR(archive_cmds, $1)='$LD -shared $libobjs $deplibs $linker_flags -soname $soname -o $lib' if test "x$supports_anon_versioning" = xyes; then _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~ @@ -5064,6 +5141,7 @@ _LT_EOF # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, $1)='true' _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes + _LT_TAGVAR(exclude_expsyms, $1)='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1,DATA/'\'' | $SED -e '\''/^[[AITW]][[ ]]/s/.*[[ ]]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib _LT_TAGVAR(old_postinstall_cmds, $1)='chmod 644 $oldlib' @@ -5110,10 +5188,6 @@ _LT_EOF _LT_TAGVAR(hardcode_shlibpath_var, $1)=no ;; - freebsd1*) - _LT_TAGVAR(ld_shlibs, $1)=no - ;; - # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little @@ -5126,7 +5200,7 @@ _LT_EOF ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. - freebsd2*) + freebsd2.*) _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' _LT_TAGVAR(hardcode_direct, $1)=yes _LT_TAGVAR(hardcode_minus_L, $1)=yes @@ -5165,7 +5239,6 @@ _LT_EOF fi if test "$with_gnu_ld" = no; then _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir' - _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='+b $libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: _LT_TAGVAR(hardcode_direct, $1)=yes _LT_TAGVAR(hardcode_direct_absolute, $1)=yes @@ -5607,9 +5680,6 @@ _LT_TAGDECL([], [no_undefined_flag], [1], _LT_TAGDECL([], [hardcode_libdir_flag_spec], [1], [Flag to hardcode $libdir into a binary during linking. This must work even if $libdir does not exist]) -_LT_TAGDECL([], [hardcode_libdir_flag_spec_ld], [1], - [[If ld is used when linking, flag to hardcode $libdir into a binary - during linking. This must work even if $libdir does not exist]]) _LT_TAGDECL([], [hardcode_libdir_separator], [1], [Whether we need a single "-rpath" flag with a separated argument]) _LT_TAGDECL([], [hardcode_direct], [0], @@ -5767,7 +5837,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported @@ -6137,7 +6206,7 @@ if test "$_lt_caught_CXX_error" != yes; then esac ;; - freebsd[[12]]*) + freebsd2.*) # C++ shared libraries reported to be fairly broken before # switch to ELF _LT_TAGVAR(ld_shlibs, $1)=no @@ -6898,12 +6967,18 @@ public class foo { } }; _LT_EOF +], [$1], [GO], [cat > conftest.$ac_ext <<_LT_EOF +package foo +func foo() { +} +_LT_EOF ]) _lt_libdeps_save_CFLAGS=$CFLAGS case "$CC $CFLAGS " in #( *\ -flto*\ *) CFLAGS="$CFLAGS -fno-lto" ;; *\ -fwhopr*\ *) CFLAGS="$CFLAGS -fno-whopr" ;; +*\ -fuse-linker-plugin*\ *) CFLAGS="$CFLAGS -fno-use-linker-plugin" ;; esac dnl Parse the compiler output and extract the necessary @@ -7100,7 +7175,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_automatic, $1)=no @@ -7233,7 +7307,6 @@ _LT_TAGVAR(export_dynamic_flag_spec, $1)= _LT_TAGVAR(hardcode_direct, $1)=no _LT_TAGVAR(hardcode_direct_absolute, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)= -_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)= _LT_TAGVAR(hardcode_libdir_separator, $1)= _LT_TAGVAR(hardcode_minus_L, $1)=no _LT_TAGVAR(hardcode_automatic, $1)=no @@ -7420,6 +7493,77 @@ CFLAGS=$lt_save_CFLAGS ])# _LT_LANG_GCJ_CONFIG +# _LT_LANG_GO_CONFIG([TAG]) +# -------------------------- +# Ensure that the configuration variables for the GNU Go compiler +# are suitably defined. These variables are subsequently used by _LT_CONFIG +# to write the compiler configuration to `libtool'. +m4_defun([_LT_LANG_GO_CONFIG], +[AC_REQUIRE([LT_PROG_GO])dnl +AC_LANG_SAVE + +# Source file extension for Go test sources. +ac_ext=go + +# Object file extension for compiled Go test sources. +objext=o +_LT_TAGVAR(objext, $1)=$objext + +# Code to be used in simple compile tests +lt_simple_compile_test_code="package main; func main() { }" + +# Code to be used in simple link tests +lt_simple_link_test_code='package main; func main() { }' + +# ltmain only uses $CC for tagged configurations so make sure $CC is set. +_LT_TAG_COMPILER + +# save warnings/boilerplate of simple test code +_LT_COMPILER_BOILERPLATE +_LT_LINKER_BOILERPLATE + +# Allow CC to be a program name with arguments. +lt_save_CC=$CC +lt_save_CFLAGS=$CFLAGS +lt_save_GCC=$GCC +GCC=yes +CC=${GOC-"gccgo"} +CFLAGS=$GOFLAGS +compiler=$CC +_LT_TAGVAR(compiler, $1)=$CC +_LT_TAGVAR(LD, $1)="$LD" +_LT_CC_BASENAME([$compiler]) + +# Go did not exist at the time GCC didn't implicitly link libc in. +_LT_TAGVAR(archive_cmds_need_lc, $1)=no + +_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds +_LT_TAGVAR(reload_flag, $1)=$reload_flag +_LT_TAGVAR(reload_cmds, $1)=$reload_cmds + +## CAVEAT EMPTOR: +## There is no encapsulation within the following macros, do not change +## the running order or otherwise move them around unless you know exactly +## what you are doing... +if test -n "$compiler"; then + _LT_COMPILER_NO_RTTI($1) + _LT_COMPILER_PIC($1) + _LT_COMPILER_C_O($1) + _LT_COMPILER_FILE_LOCKS($1) + _LT_LINKER_SHLIBS($1) + _LT_LINKER_HARDCODE_LIBPATH($1) + + _LT_CONFIG($1) +fi + +AC_LANG_RESTORE + +GCC=$lt_save_GCC +CC=$lt_save_CC +CFLAGS=$lt_save_CFLAGS +])# _LT_LANG_GO_CONFIG + + # _LT_LANG_RC_CONFIG([TAG]) # ------------------------- # Ensure that the configuration variables for the Windows resource compiler @@ -7489,6 +7633,13 @@ dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([LT_AC_PROG_GCJ], []) +# LT_PROG_GO +# ---------- +AC_DEFUN([LT_PROG_GO], +[AC_CHECK_TOOL(GOC, gccgo,) +]) + + # LT_PROG_RC # ---------- AC_DEFUN([LT_PROG_RC], diff --git a/m4/ltoptions.m4 b/m4/ltoptions.m4 index 17cfd51..5d9acd8 100644 --- a/m4/ltoptions.m4 +++ b/m4/ltoptions.m4 @@ -326,9 +326,24 @@ dnl AC_DEFUN([AM_DISABLE_FAST_INSTALL], []) # MODE is either `yes' or `no'. If omitted, it defaults to `both'. m4_define([_LT_WITH_PIC], [AC_ARG_WITH([pic], - [AS_HELP_STRING([--with-pic], + [AS_HELP_STRING([--with-pic@<:@=PKGS@:>@], [try to use only PIC/non-PIC objects @<:@default=use both@:>@])], - [pic_mode="$withval"], + [lt_p=${PACKAGE-default} + case $withval in + yes|no) pic_mode=$withval ;; + *) + pic_mode=default + # Look at the argument we got. We use all the common list separators. + lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," + for lt_pkg in $withval; do + IFS="$lt_save_ifs" + if test "X$lt_pkg" = "X$lt_p"; then + pic_mode=yes + fi + done + IFS="$lt_save_ifs" + ;; + esac], [pic_mode=default]) test -z "$pic_mode" && pic_mode=m4_default([$1], [default]) diff --git a/m4/ltversion.m4 b/m4/ltversion.m4 index 9c7b5d4..07a8602 100644 --- a/m4/ltversion.m4 +++ b/m4/ltversion.m4 @@ -9,15 +9,15 @@ # @configure_input@ -# serial 3293 ltversion.m4 +# serial 3337 ltversion.m4 # This file is part of GNU Libtool -m4_define([LT_PACKAGE_VERSION], [2.4]) -m4_define([LT_PACKAGE_REVISION], [1.3293]) +m4_define([LT_PACKAGE_VERSION], [2.4.2]) +m4_define([LT_PACKAGE_REVISION], [1.3337]) AC_DEFUN([LTVERSION_VERSION], -[macro_version='2.4' -macro_revision='1.3293' +[macro_version='2.4.2' +macro_revision='1.3337' _LT_DECL(, macro_version, 0, [Which release of libtool.m4 was used?]) _LT_DECL(, macro_revision, 0) ]) diff --git a/perform/Makefile.in b/perform/Makefile.in index a702438..1f9cfd6 100644 --- a/perform/Makefile.in +++ b/perform/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,6 +68,7 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING @BUILD_PARALLEL_CONDITIONAL_FALSE@bin_PROGRAMS = \ @@ -62,10 +79,10 @@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ check_PROGRAMS = dectris_perf$(EXEEXT) iopipe$(EXEEXT) chunk$(EXEEXT) \ overhead$(EXEEXT) zip_perf$(EXEEXT) perf_meta$(EXEEXT) \ $(am__EXEEXT_2) perf$(EXEEXT) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_3) subdir = perform ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -81,9 +98,10 @@ benchpar_SOURCES = benchpar.c benchpar_OBJECTS = benchpar.$(OBJEXT) benchpar_LDADD = $(LDADD) benchpar_DEPENDENCIES = $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = chunk_SOURCES = chunk.c chunk_OBJECTS = chunk.$(OBJEXT) chunk_LDADD = $(LDADD) @@ -125,6 +143,18 @@ perf_meta_DEPENDENCIES = $(LIBH5TEST) $(LIBHDF5) zip_perf_SOURCES = zip_perf.c zip_perf_OBJECTS = zip_perf.$(OBJEXT) zip_perf_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -135,34 +165,40 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = benchpar.c chunk.c dectris_perf.c $(h5perf_SOURCES) \ $(h5perf_serial_SOURCES) iopipe.c mpi-perf.c overhead.c perf.c \ perf_meta.c zip_perf.c DIST_SOURCES = benchpar.c chunk.c dectris_perf.c $(h5perf_SOURCES) \ $(h5perf_serial_SOURCES) iopipe.c mpi-perf.c overhead.c perf.c \ perf_meta.c zip_perf.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) +am__EXEEXT_3 = dectris_perf$(EXEEXT) iopipe$(EXEEXT) chunk$(EXEEXT) \ + overhead$(EXEEXT) zip_perf$(EXEEXT) perf_meta$(EXEEXT) \ + h5perf_serial$(EXEEXT) $(am__EXEEXT_2) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -180,12 +216,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -490,6 +523,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -519,6 +556,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -530,8 +568,11 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -580,37 +621,37 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -benchpar$(EXEEXT): $(benchpar_OBJECTS) $(benchpar_DEPENDENCIES) +benchpar$(EXEEXT): $(benchpar_OBJECTS) $(benchpar_DEPENDENCIES) $(EXTRA_benchpar_DEPENDENCIES) @rm -f benchpar$(EXEEXT) $(AM_V_CCLD)$(LINK) $(benchpar_OBJECTS) $(benchpar_LDADD) $(LIBS) -chunk$(EXEEXT): $(chunk_OBJECTS) $(chunk_DEPENDENCIES) +chunk$(EXEEXT): $(chunk_OBJECTS) $(chunk_DEPENDENCIES) $(EXTRA_chunk_DEPENDENCIES) @rm -f chunk$(EXEEXT) $(AM_V_CCLD)$(LINK) $(chunk_OBJECTS) $(chunk_LDADD) $(LIBS) -dectris_perf$(EXEEXT): $(dectris_perf_OBJECTS) $(dectris_perf_DEPENDENCIES) +dectris_perf$(EXEEXT): $(dectris_perf_OBJECTS) $(dectris_perf_DEPENDENCIES) $(EXTRA_dectris_perf_DEPENDENCIES) @rm -f dectris_perf$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dectris_perf_OBJECTS) $(dectris_perf_LDADD) $(LIBS) -h5perf$(EXEEXT): $(h5perf_OBJECTS) $(h5perf_DEPENDENCIES) +h5perf$(EXEEXT): $(h5perf_OBJECTS) $(h5perf_DEPENDENCIES) $(EXTRA_h5perf_DEPENDENCIES) @rm -f h5perf$(EXEEXT) $(AM_V_CCLD)$(h5perf_LINK) $(h5perf_OBJECTS) $(h5perf_LDADD) $(LIBS) -h5perf_serial$(EXEEXT): $(h5perf_serial_OBJECTS) $(h5perf_serial_DEPENDENCIES) +h5perf_serial$(EXEEXT): $(h5perf_serial_OBJECTS) $(h5perf_serial_DEPENDENCIES) $(EXTRA_h5perf_serial_DEPENDENCIES) @rm -f h5perf_serial$(EXEEXT) $(AM_V_CCLD)$(h5perf_serial_LINK) $(h5perf_serial_OBJECTS) $(h5perf_serial_LDADD) $(LIBS) -iopipe$(EXEEXT): $(iopipe_OBJECTS) $(iopipe_DEPENDENCIES) +iopipe$(EXEEXT): $(iopipe_OBJECTS) $(iopipe_DEPENDENCIES) $(EXTRA_iopipe_DEPENDENCIES) @rm -f iopipe$(EXEEXT) $(AM_V_CCLD)$(LINK) $(iopipe_OBJECTS) $(iopipe_LDADD) $(LIBS) -mpi-perf$(EXEEXT): $(mpi_perf_OBJECTS) $(mpi_perf_DEPENDENCIES) +mpi-perf$(EXEEXT): $(mpi_perf_OBJECTS) $(mpi_perf_DEPENDENCIES) $(EXTRA_mpi_perf_DEPENDENCIES) @rm -f mpi-perf$(EXEEXT) $(AM_V_CCLD)$(LINK) $(mpi_perf_OBJECTS) $(mpi_perf_LDADD) $(LIBS) -overhead$(EXEEXT): $(overhead_OBJECTS) $(overhead_DEPENDENCIES) +overhead$(EXEEXT): $(overhead_OBJECTS) $(overhead_DEPENDENCIES) $(EXTRA_overhead_DEPENDENCIES) @rm -f overhead$(EXEEXT) $(AM_V_CCLD)$(LINK) $(overhead_OBJECTS) $(overhead_LDADD) $(LIBS) -perf$(EXEEXT): $(perf_OBJECTS) $(perf_DEPENDENCIES) +perf$(EXEEXT): $(perf_OBJECTS) $(perf_DEPENDENCIES) $(EXTRA_perf_DEPENDENCIES) @rm -f perf$(EXEEXT) $(AM_V_CCLD)$(LINK) $(perf_OBJECTS) $(perf_LDADD) $(LIBS) -perf_meta$(EXEEXT): $(perf_meta_OBJECTS) $(perf_meta_DEPENDENCIES) +perf_meta$(EXEEXT): $(perf_meta_OBJECTS) $(perf_meta_DEPENDENCIES) $(EXTRA_perf_meta_DEPENDENCIES) @rm -f perf_meta$(EXEEXT) $(AM_V_CCLD)$(LINK) $(perf_meta_OBJECTS) $(perf_meta_LDADD) $(LIBS) -zip_perf$(EXEEXT): $(zip_perf_OBJECTS) $(zip_perf_DEPENDENCIES) +zip_perf$(EXEEXT): $(zip_perf_OBJECTS) $(zip_perf_DEPENDENCIES) $(EXTRA_zip_perf_DEPENDENCIES) @rm -f zip_perf$(EXEEXT) $(AM_V_CCLD)$(LINK) $(zip_perf_OBJECTS) $(zip_perf_LDADD) $(LIBS) @@ -639,26 +680,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -715,6 +753,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -767,10 +819,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -858,7 +915,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -887,7 +944,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -913,7 +970,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -937,7 +994,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -947,7 +1004,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1037,7 +1094,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1067,7 +1124,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index aafb18e..328bba6 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,4 +1,4 @@ -HDF5 version 1.9.124 currently under development +HDF5 version 1.9.128 currently under development ================================================================================ @@ -39,6 +39,10 @@ New Features Configuration: ------------- + - Updated to latest autotools and changed all hard *.sh scripts to + configure managed *.sh.in files. Removed overloading of autotools + TESTS variable by examples and tests. Renamed configure.in to + configure.ac. (ADB - 2012/08/23 - HDFFV-8129) - Added code to display the version information of XL fortran and C++ in the summary of configure. (AKC - 2012/02/28 - HDFFV-7793) - Configure now generates Makefiles that build in "silent make mode" @@ -163,6 +167,9 @@ New Features Parallel Library: ----------------- + - Add H5Pget_mpio_no_collective_cause() function that retrive reasons + why the collective I/O was broken during read/write IO access. + (JKM - 2012/08/30 HDFFV-8143) - Special Collective IO (IO when some processes do not contribute to the IO) and Complex Derived Datatype MPI functionalities are no longer conditionally enabled in the library by configure. They are always @@ -705,6 +712,17 @@ Bug Fixes since HDF5-1.8.0 release Tools ----- + - h5diff: Fixed the incorrect result when comparing attribute data + values and the data type has same class but different size. + HDFFV-7942 (JKM 08/15/2012) + - ph5diff: Fixed intermittent hang issue on a certain operation in + parallel mode. It was detected by daily test for comparing + non-comparable objects, but it could have occurred in other + operations depend on machine condition. HDFFV-8003 (JKM 2012/08/01) + - h5diff: Fixed test failure for "make check" due to failure of + copying test files when performed in HDF5 source tree. Also applied + to other tools. + HDFFV-8107 (JKM 2012/08/01) - h5diff: Fixed the Function COPY_TESTFILES_TO_TESTDIR() of testh5diff.sh to better report when there is an error in the file copying. HDFFV-8105 (AKC -2012/07/22) @@ -1046,22 +1064,14 @@ Platforms Tested Sun Fortran 95 8.4 SunOS_sparc Patch 128231-06 Sun C++ 5.10 SunOS_sparc 128228-11 - - Windows XP Visual Studio 2008 w/ Intel Fortran 11.1 - Visual Studio 2010 - Cygwin(1.7.7 native gcc(4.3.4) compiler and gfortran) - - Windows XP x64 Visual Studio 2008 w/ Intel Fortran 11.1 - Visual Studio 2010 - Cygwin(1.7.7 native gcc(4.3.4) compiler and gfortran) - - Windows Vista Visual Studio 2008 w/ Intel Fortran 11.1 - - Windows Vista x64 Visual Studio 2008 w/ Intel Fortran 11.1 - Windows 7 Visual Studio 2010 + Windows 7 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake) + Visual Studio 2010 w/ Intel Fortran 12 (cmake) + Cygwin(1.7.9 native gcc(4.5.3) compiler and gfortran) - Windows 7 x64 Visual Studio 2010 + Windows 7 x64 Visual Studio 2008 w/ Intel Fortran 11.1 (cmake) + Visual Studio 2010 w/ Intel Fortran 12 (cmake) + Cygwin(1.7.9 native gcc(4.5.3) compiler and gfortran) MAC OS 10.5 (Intel) gcc i686-apple-darwin8-gcc-4.0.1 (GCC) 4.0.1 G95 (GCC 4.0.3 (g95 0.91!) Nov 21 2006) @@ -1084,10 +1094,8 @@ Platform C F90 F90 C++ zlib SZIP parallel parallel SunOS5.10 64-bit n y n y y y SunOS5.10 32-bit n y n y y y -Windows XP n y(3) n(3) y y y -Windows XP x64 n y(3) n(3) y y y -Windows Vista n y(3) n(3) y y y -Windows Vista x64 n y(3) n(3) y y y +Windows 7 y y n y y y +Windows 7 x64 y y n y y y Mac OS X 10.5 Intel n y n y y y FreeBSD 8.2 32- and 64-bit n x n x y y RedHat EL4 2.6.9 i686 GNU W y(2) y(4) y(2) y y y diff --git a/src/H5ACprivate.h b/src/H5ACprivate.h index 456eb0d..26fa051 100644 --- a/src/H5ACprivate.h +++ b/src/H5ACprivate.h @@ -321,6 +321,8 @@ H5_DLLVAR hid_t H5AC_ind_dxpl_id; #define H5AC__FLUSH_IGNORE_PROTECTED_FLAG H5C__FLUSH_IGNORE_PROTECTED_FLAG #define H5AC__FREE_FILE_SPACE_FLAG H5C__FREE_FILE_SPACE_FLAG #define H5AC__TAKE_OWNERSHIP_FLAG H5C__TAKE_OWNERSHIP_FLAG +#define H5AC__FLUSH_LAST_FLAG H5C__FLUSH_LAST_FLAG +#define H5AC__FLUSH_COLLECTIVELY_FLAG H5C__FLUSH_COLLECTIVELY_FLAG /* #defines of flags used to report entry status in the @@ -414,12 +414,6 @@ done: * Programmer: John Mainzer * 3/17/10 * - * Modifications: - * - * Heavily reworked to have each process flush a group of - * adjacent entries. - * JRM -- 4/15/10 - * *------------------------------------------------------------------------- */ #ifdef H5_HAVE_PARALLEL @@ -442,8 +436,13 @@ H5C_apply_candidate_list(H5F_t * f, int last_entry_to_flush; int entries_to_clear = 0; int entries_to_flush = 0; + int entries_to_flush_or_clear_last = 0; + int entries_to_flush_collectively = 0; int entries_cleared = 0; int entries_flushed = 0; + int entries_delayed = 0; + int entries_flushed_or_cleared_last = 0; + int entries_flushed_collectively = 0; int entries_examined = 0; int initial_list_len; int * candidate_assignment_table = NULL; @@ -451,6 +450,7 @@ H5C_apply_candidate_list(H5F_t * f, H5C_cache_entry_t * clear_ptr = NULL; H5C_cache_entry_t * entry_ptr = NULL; H5C_cache_entry_t * flush_ptr = NULL; + H5C_cache_entry_t * delayed_ptr = NULL; #if H5C_DO_SANITY_CHECKS haddr_t last_addr; #endif /* H5C_DO_SANITY_CHECKS */ @@ -612,12 +612,28 @@ H5C_apply_candidate_list(H5F_t * f, (int)(cache_ptr->LRU_list_len)); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ + /* ====================================================================== * + * Now scan the LRU and PEL lists, flushing or clearing entries as + * needed. + * + * The flush_me_last and flush_me_collectively flags may dictate how or + * when some entries can be flushed, and should be addressed here. + * However, in their initial implementation, these flags only apply to the + * superblock, so there's only a relatively small change to this function + * to account for this one case where they come into play. If these flags + * are ever expanded upon, this function and the following flushing steps + * should be reworked to account for additional cases. + * ====================================================================== */ + entries_examined = 0; initial_list_len = cache_ptr->LRU_list_len; entry_ptr = cache_ptr->LRU_tail_ptr; + /* Examine each entry in the LRU list */ while((entry_ptr != NULL) && (entries_examined <= initial_list_len) && ((entries_cleared + entries_flushed) < num_candidates)) { + + /* If this process needs to clear this entry. */ if(entry_ptr->clear_on_unprotect) { entry_ptr->clear_on_unprotect = FALSE; clear_ptr = entry_ptr; @@ -625,7 +641,7 @@ H5C_apply_candidate_list(H5F_t * f, entries_cleared++; #if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 ) - HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank, + HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank, (long long)clear_ptr->addr); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ @@ -638,14 +654,18 @@ H5C_apply_candidate_list(H5F_t * f, &first_flush, TRUE) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't clear entry.") - } else if(entry_ptr->flush_immediately) { + } /* end if */ + + /* Else, if this process needs to flush this entry. */ + else if (entry_ptr->flush_immediately) { + entry_ptr->flush_immediately = FALSE; flush_ptr = entry_ptr; entry_ptr = entry_ptr->prev; entries_flushed++; #if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 ) - HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank, + HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank, (long long)flush_ptr->addr); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ @@ -657,17 +677,20 @@ H5C_apply_candidate_list(H5F_t * f, H5C__NO_FLAGS_SET, &first_flush, TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't clear entry.") - } else { + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't flush entry.") + } /* end else-if */ + + /* Otherwise, no action to be taken on this entry. Grab the next. */ + else { entry_ptr = entry_ptr->prev; - } + } /* end else */ entries_examined++; } /* end while */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG - HDfprintf(stdout, "%s:%d: entries examined/cleared/flushed = %d/%d/%d.\n", - FUNC, mpi_rank, entries_examined, + HDfprintf(stdout, "%s:%d: entries examined/cleared/flushed = %d/%d/%d.\n", + FUNC, mpi_rank, entries_examined, entries_cleared, entries_flushed); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ @@ -676,69 +699,168 @@ H5C_apply_candidate_list(H5F_t * f, */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG - HDfprintf(stdout, "%s:%d: scanning pinned entry list. len = %d\n", + HDfprintf(stdout, "%s:%d: scanning pinned entry list. len = %d\n", FUNC, mpi_rank, (int)(cache_ptr->pel_len)); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ entry_ptr = cache_ptr->pel_head_ptr; while((entry_ptr != NULL) && - ((entries_cleared + entries_flushed) < num_candidates)) { - if(entry_ptr->clear_on_unprotect) { - entry_ptr->clear_on_unprotect = FALSE; - clear_ptr = entry_ptr; - entry_ptr = entry_ptr->next; - entries_cleared++; + ((entries_cleared + entries_flushed + entries_delayed) + < num_candidates)) { + + /* If entry is marked for flush or for clear */ + if((entry_ptr->clear_on_unprotect||entry_ptr->flush_immediately)) { + + /* If this entry needs to be flushed last */ + if (entry_ptr->flush_me_last) { + + /* At this time, only the superblock supports being + flushed last. Conveniently, it also happens to be the only + entry that supports being flushed collectively, as well. Also + conveniently, it's always pinned, so we only need to check + for it while scanning the PEL here. Finally, it's never + included in a candidate list that excludes other dirty + entries in a cache, so we can handle this relatively simple + case here. + + For now, this function asserts this and saves the entry + to flush it after scanning the rest of the PEL list. + + If there are ever more entries that either need to be + flushed last and/or flushed collectively, this whole routine + will need to be reworked to handle all additional cases. As + it is the simple case of a single pinned entry needing + flushed last and collectively is just a minor addition to + this routine, but signficantly buffing up the usage of + flush_me_last or flush_me_collectively will require a more + intense rework of this function and potentially the function + of candidate lists as a whole. */ + + HDassert(entry_ptr->flush_me_collectively); + entries_to_flush_or_clear_last++; + entries_to_flush_collectively++; + HDassert(entries_to_flush_or_clear_last == 1); + HDassert(entries_to_flush_collectively == 1); + + /* Delay the entry. It will be flushed later. */ + delayed_ptr = entry_ptr; + entries_delayed++; + HDassert(entries_delayed == 1); + + } /* end if */ + + /* Else, this process needs to clear this entry. */ + else if (entry_ptr->clear_on_unprotect) { + HDassert(!entry_ptr->flush_immediately); + entry_ptr->clear_on_unprotect = FALSE; + clear_ptr = entry_ptr; + entry_ptr = entry_ptr->next; + entries_cleared++; #if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 ) - HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank, + HDfprintf(stdout, "%s:%d: clearing 0x%llx.\n", FUNC, mpi_rank, (long long)clear_ptr->addr); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ - if(H5C_flush_single_entry(f, - primary_dxpl_id, - secondary_dxpl_id, - clear_ptr->type, - clear_ptr->addr, - H5C__FLUSH_CLEAR_ONLY_FLAG, - &first_flush, - TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't clear entry.") - } else if(entry_ptr->flush_immediately) { - entry_ptr->flush_immediately = FALSE; - flush_ptr = entry_ptr; - entry_ptr = entry_ptr->next; - entries_flushed++; + if(H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + clear_ptr->type, + clear_ptr->addr, + H5C__FLUSH_CLEAR_ONLY_FLAG, + &first_flush, + TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't clear entry.") + } /* end else-if */ + + /* Else, if this process needs to independently flush this entry. */ + else if (entry_ptr->flush_immediately) { + entry_ptr->flush_immediately = FALSE; + flush_ptr = entry_ptr; + entry_ptr = entry_ptr->next; + entries_flushed++; #if ( H5C_APPLY_CANDIDATE_LIST__DEBUG > 1 ) - HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank, + HDfprintf(stdout, "%s:%d: flushing 0x%llx.\n", FUNC, mpi_rank, (long long)flush_ptr->addr); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ - if(H5C_flush_single_entry(f, - primary_dxpl_id, - secondary_dxpl_id, - flush_ptr->type, - flush_ptr->addr, - H5C__NO_FLAGS_SET, - &first_flush, - TRUE) < 0) - HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't clear entry.") - } else { + if(H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + flush_ptr->type, + flush_ptr->addr, + H5C__NO_FLAGS_SET, + &first_flush, + TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't flush entry.") + } /* end else-if */ + } /* end if */ + + /* Otherwise, this entry is not marked for flush or clear. Grab the next. */ + else { entry_ptr = entry_ptr->next; - } + } /* end else */ + } /* end while */ #if H5C_APPLY_CANDIDATE_LIST__DEBUG - HDfprintf(stdout, - "%s:%d: pel entries examined/cleared/flushed = %d/%d/%d.\n", - FUNC, mpi_rank, entries_examined, + HDfprintf(stdout, + "%s:%d: pel entries examined/cleared/flushed = %d/%d/%d.\n", + FUNC, mpi_rank, entries_examined, entries_cleared, entries_flushed); HDfprintf(stdout, "%s:%d: done.\n", FUNC, mpi_rank); fsync(stdout); #endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */ - if((entries_flushed != entries_to_flush) || (entries_cleared != entries_to_clear)) + /* ====================================================================== * + * Now, handle all delayed entries. * + * * + * This can *only* be the superblock at this time, so it's relatively * + * easy to deal with. We're collectively flushing the entry saved from * + * above. This will need to be handled differently if there are ever more * + * than one entry needing this special treatment.) * + * ====================================================================== */ + + if (delayed_ptr) { + + if (delayed_ptr->clear_on_unprotect) { + entry_ptr->clear_on_unprotect = FALSE; + entries_cleared++; + } else if (delayed_ptr->flush_immediately) { + entry_ptr->flush_immediately = FALSE; + entries_flushed++; + } /* end if */ + + if(H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + delayed_ptr->type, + delayed_ptr->addr, + H5C__NO_FLAGS_SET, + &first_flush, + TRUE) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, + "Can't flush entry collectively.") + + entries_flushed_collectively++; + entries_flushed_or_cleared_last++; + } /* end if */ + + /* ====================================================================== * + * Finished flushing everything. * + * ====================================================================== */ + + HDassert((entries_flushed == entries_to_flush)); + HDassert((entries_cleared == entries_to_clear)); + HDassert((entries_flushed_or_cleared_last == entries_to_flush_or_clear_last)); + HDassert((entries_flushed_collectively == entries_to_flush_collectively)); + + if((entries_flushed != entries_to_flush) || + (entries_cleared != entries_to_clear) || + (entries_flushed_or_cleared_last != entries_to_flush_or_clear_last) || + (entries_flushed_collectively != entries_to_flush_collectively)) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "entry count mismatch.") done: @@ -924,7 +1046,8 @@ H5C_construct_candidate_list__min_clean(H5C_t * cache_ptr) entry_ptr = cache_ptr->dLRU_tail_ptr; while((nominated_entries_size < space_needed) && (nominated_entries_count < cache_ptr->slist_len) && - (entry_ptr != NULL)) { + (entry_ptr != NULL) && + (!entry_ptr->flush_me_last)) { haddr_t nominated_addr; HDassert( ! (entry_ptr->is_protected) ); @@ -1771,8 +1894,12 @@ H5C_flush_cache(H5F_t *f, hid_t primary_dxpl_id, hid_t secondary_dxpl_id, unsign HDassert( entry_ptr != NULL ); HDassert( entry_ptr->in_slist ); - if ( ( ! flush_marked_entries ) || - ( entry_ptr->flush_marker ) ) { + if ( ( ( ! flush_marked_entries ) || + ( entry_ptr->flush_marker ) ) && + ( ( ! entry_ptr->flush_me_last ) || + ( ( entry_ptr->flush_me_last ) && + ( cache_ptr->num_last_entries >= + cache_ptr->slist_len ) ) ) ) { if ( entry_ptr->is_protected ) { @@ -2524,6 +2651,10 @@ H5C_insert_entry(H5F_t * f, herr_t result; hbool_t first_flush = TRUE; hbool_t insert_pinned; + hbool_t flush_last; +#ifdef H5_HAVE_PARALLEL + hbool_t flush_collectively; +#endif hbool_t set_flush_marker; hbool_t write_permitted = TRUE; size_t empty_space; @@ -2562,8 +2693,12 @@ H5C_insert_entry(H5F_t * f, } #endif /* H5C_DO_EXTREME_SANITY_CHECKS */ - set_flush_marker = ( (flags & H5C__SET_FLUSH_MARKER_FLAG) != 0 ); - insert_pinned = ( (flags & H5C__PIN_ENTRY_FLAG) != 0 ); + set_flush_marker = ( (flags & H5C__SET_FLUSH_MARKER_FLAG) != 0 ); + insert_pinned = ( (flags & H5C__PIN_ENTRY_FLAG) != 0 ); + flush_last = ( (flags & H5C__FLUSH_LAST_FLAG) != 0 ); +#ifdef H5_HAVE_PARALLEL + flush_collectively = ( (flags & H5C__FLUSH_COLLECTIVELY_FLAG) != 0 ); +#endif entry_ptr = (H5C_cache_entry_t *)thing; @@ -2604,6 +2739,10 @@ H5C_insert_entry(H5F_t * f, entry_ptr->is_pinned = insert_pinned; entry_ptr->pinned_from_client = insert_pinned; + entry_ptr->flush_me_last = flush_last; +#ifdef H5_HAVE_PARALLEL + entry_ptr->flush_me_collectively = flush_collectively; +#endif /* newly inserted entries are assumed to be dirty */ entry_ptr->is_dirty = TRUE; @@ -7710,85 +7849,91 @@ H5C_flush_invalidate_cache(H5F_t * f, HDassert( entry_ptr != NULL ); HDassert( entry_ptr->in_slist ); -#if H5C_DO_SANITY_CHECKS - /* update actual_slist_len & actual_slist_size before - * the flush. Note that the entry will be removed - * from the slist after the flush, and thus may be - * resized by the flush callback. This is OK, as - * we will catch the size delta in - * cache_ptr->slist_size_increase. - * - * Note that we include pinned entries in this count, even - * though we will not actually flush them. - */ - actual_slist_len++; - actual_slist_size += entry_ptr->size; -#endif /* H5C_DO_SANITY_CHECKS */ + if ( ( ! entry_ptr->flush_me_last ) || + ( ( entry_ptr->flush_me_last ) && + ( cache_ptr->num_last_entries >= + cache_ptr->slist_len ) ) ) { + + #if H5C_DO_SANITY_CHECKS + /* update actual_slist_len & actual_slist_size before + * the flush. Note that the entry will be removed + * from the slist after the flush, and thus may be + * resized by the flush callback. This is OK, as + * we will catch the size delta in + * cache_ptr->slist_size_increase. + * + * Note that we include pinned entries in this count, even + * though we will not actually flush them. + */ + actual_slist_len++; + actual_slist_size += entry_ptr->size; + #endif /* H5C_DO_SANITY_CHECKS */ - if ( entry_ptr->is_protected ) { + if ( entry_ptr->is_protected ) { - /* we have major problems -- but lets flush - * everything we can before we flag an error. - */ - protected_entries++; + /* we have major problems -- but lets flush + * everything we can before we flag an error. + */ + protected_entries++; - } else if ( entry_ptr->is_pinned ) { + } else if ( entry_ptr->is_pinned ) { - /* Test to see if we are can flush the entry now. - * If we can, go ahead and flush, but don't tell - * H5C_flush_single_entry() to destroy the entry - * as pinned entries can't be evicted. - */ - if(entry_ptr->flush_dep_height == curr_flush_dep_height ) { - status = H5C_flush_single_entry(f, - primary_dxpl_id, - secondary_dxpl_id, - NULL, - entry_ptr->addr, - H5C__NO_FLAGS_SET, - &first_flush, - FALSE); - if ( status < 0 ) { - - /* This shouldn't happen -- if it does, we are toast - * so just scream and die. - */ + /* Test to see if we are can flush the entry now. + * If we can, go ahead and flush, but don't tell + * H5C_flush_single_entry() to destroy the entry + * as pinned entries can't be evicted. + */ + if(entry_ptr->flush_dep_height == curr_flush_dep_height ) { + status = H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + NULL, + entry_ptr->addr, + H5C__NO_FLAGS_SET, + &first_flush, + FALSE); + if ( status < 0 ) { + + /* This shouldn't happen -- if it does, we are toast + * so just scream and die. + */ - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ - "dirty pinned entry flush failed.") + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ + "dirty pinned entry flush failed.") + } /* end if */ + flushed_during_dep_loop = TRUE; } /* end if */ - flushed_during_dep_loop = TRUE; + else if(entry_ptr->flush_dep_height < curr_flush_dep_height) + /* This shouldn't happen -- if it does, just scream and die. */ + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") } /* end if */ - else if(entry_ptr->flush_dep_height < curr_flush_dep_height) - /* This shouldn't happen -- if it does, just scream and die. */ - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") - } /* end if */ - else { - if(entry_ptr->flush_dep_height == curr_flush_dep_height ){ + else { + if(entry_ptr->flush_dep_height == curr_flush_dep_height ){ - status = H5C_flush_single_entry(f, - primary_dxpl_id, - secondary_dxpl_id, - NULL, - entry_ptr->addr, - (cooked_flags | H5C__FLUSH_INVALIDATE_FLAG), - &first_flush, - TRUE); - if ( status < 0 ) { - - /* This shouldn't happen -- if it does, we are toast so - * just scream and die. - */ + status = H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + NULL, + entry_ptr->addr, + (cooked_flags | H5C__FLUSH_INVALIDATE_FLAG), + &first_flush, + TRUE); + if ( status < 0 ) { - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ - "dirty entry flush destroy failed.") + /* This shouldn't happen -- if it does, we are toast so + * just scream and die. + */ + + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ + "dirty entry flush destroy failed.") + } /* end if */ + flushed_during_dep_loop = TRUE; } /* end if */ - flushed_during_dep_loop = TRUE; - } /* end if */ - else if(entry_ptr->flush_dep_height < curr_flush_dep_height) - /* This shouldn't happen -- if it does, just scream and die. */ - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") - } /* end else */ + else if(entry_ptr->flush_dep_height < curr_flush_dep_height) + /* This shouldn't happen -- if it does, just scream and die. */ + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") + } /* end else */ + } /* end if */ } /* end while loop scanning skip list */ #if H5C_DO_SANITY_CHECKS @@ -7835,45 +7980,52 @@ H5C_flush_invalidate_cache(H5F_t * f, next_entry_ptr = entry_ptr->ht_next; HDassert ( ( next_entry_ptr == NULL ) || ( next_entry_ptr->magic == H5C__H5C_CACHE_ENTRY_T_MAGIC ) ); - if ( entry_ptr->is_protected ) { - - /* we have major problems -- but lets flush and destroy - * everything we can before we flag an error. - */ - protected_entries++; - if ( ! entry_ptr->in_slist ) { + if ( ( ! entry_ptr->flush_me_last ) || + ( ( entry_ptr->flush_me_last ) && + ( cache_ptr->num_last_entries >= + cache_ptr->slist_len ) ) ) { - HDassert( !(entry_ptr->is_dirty) ); - } - } else if ( ! ( entry_ptr->is_pinned ) ) { + if ( entry_ptr->is_protected ) { - /* Test to see if we are can flush the entry now. - * If we can, go ahead and flush. - */ - if(entry_ptr->flush_dep_height == curr_flush_dep_height ){ - status = H5C_flush_single_entry(f, - primary_dxpl_id, - secondary_dxpl_id, - NULL, - entry_ptr->addr, - (cooked_flags | H5C__FLUSH_INVALIDATE_FLAG), - &first_flush, - TRUE); - if ( status < 0 ) { + /* we have major problems -- but lets flush and destroy + * everything we can before we flag an error. + */ + protected_entries++; - /* This shouldn't happen -- if it does, we are toast so - * just scream and die. - */ + if ( ! entry_ptr->in_slist ) { - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ - "Entry flush destroy failed.") + HDassert( !(entry_ptr->is_dirty) ); } - flushed_during_dep_loop = TRUE; + } else if ( ! ( entry_ptr->is_pinned ) ) { + + /* Test to see if we are can flush the entry now. + * If we can, go ahead and flush. + */ + if(entry_ptr->flush_dep_height == curr_flush_dep_height ){ + status = H5C_flush_single_entry(f, + primary_dxpl_id, + secondary_dxpl_id, + NULL, + entry_ptr->addr, + (cooked_flags | H5C__FLUSH_INVALIDATE_FLAG), + &first_flush, + TRUE); + if ( status < 0 ) { + + /* This shouldn't happen -- if it does, we are toast so + * just scream and die. + */ + + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, \ + "Entry flush destroy failed.") + } + flushed_during_dep_loop = TRUE; + } /* end if */ + else if(entry_ptr->flush_dep_height < curr_flush_dep_height) + /* This shouldn't happen -- if it does, just scream and die. */ + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") } /* end if */ - else if(entry_ptr->flush_dep_height < curr_flush_dep_height) - /* This shouldn't happen -- if it does, just scream and die. */ - HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "dirty entry below current flush dep. height.") } /* end if */ /* We can't do anything if the entry is pinned. The * hope is that the entry will be unpinned as the diff --git a/src/H5Cpkg.h b/src/H5Cpkg.h index 37068f1..909578b 100644 --- a/src/H5Cpkg.h +++ b/src/H5Cpkg.h @@ -282,6 +282,16 @@ * don't use this at present, I hope that this will allow * some optimizations when I get to it. * + * num_last_entries: The number of entries in the cache that can only be + * flushed after all other entries in the cache have + * been flushed. At this time, this will only ever be + * one entry (the superblock), and the code has been + * protected with HDasserts to enforce this. This restraint + * can certainly be relaxed in the future if the need for + * multiple entries being flushed last arises, though + * explicit tests for that case should be added when said + * HDasserts are removed. + * * With the addition of the fractal heap, the cache must now deal with * the case in which entries may be dirtied, moved, or have their sizes * changed during a flush. To allow sanity checks in this situation, the @@ -878,6 +888,7 @@ struct H5C_t int32_t slist_len; size_t slist_size; H5SL_t * slist_ptr; + int32_t num_last_entries; #if H5C_DO_SANITY_CHECKS int64_t slist_len_increase; int64_t slist_size_increase; @@ -1964,6 +1975,10 @@ if ( (cache_ptr)->index_size != \ } else { \ (cache_ptr)->clean_index_size += (entry_ptr)->size; \ } \ + if ((entry_ptr)->flush_me_last) { \ + (cache_ptr)->num_last_entries++; \ + HDassert((cache_ptr)->num_last_entries == 1); \ + } \ H5C__UPDATE_STATS_FOR_HT_INSERTION(cache_ptr) \ } @@ -1993,6 +2008,10 @@ if ( (cache_ptr)->index_size != \ } else { \ (cache_ptr)->clean_index_size -= (entry_ptr)->size; \ } \ + if ((entry_ptr)->flush_me_last) { \ + (cache_ptr)->num_last_entries--; \ + HDassert((cache_ptr)->num_last_entries == 0); \ + } \ H5C__UPDATE_STATS_FOR_HT_DELETION(cache_ptr) \ } diff --git a/src/H5Cprivate.h b/src/H5Cprivate.h index 0c7631a..7fde69b 100644 --- a/src/H5Cprivate.h +++ b/src/H5Cprivate.h @@ -371,6 +371,23 @@ typedef herr_t (*H5C_log_flush_func_t)(H5C_t * cache_ptr, * H5C__FLUSH_MARKED_ENTRIES_FLAG. The flag is reset when * the entry is flushed for whatever reason. * + * flush_me_last: Boolean flag indicating that this entry should not be + * flushed from the cache until all other entries without + * the flush_me_last flag set have been flushed. + * + * flush_me_collectively: Boolean flag indicating that this entry needs + * to be flushed collectively when in a parallel + * situation. + * + * Note: At this time, the flush_me_last and flush_me_collectively + * flags will only be applied to one entry, the superblock, + * and the code utilizing these flags is protected with HDasserts + * to enforce this. This restraint can certainly be relaxed in + * the future if the the need for multiple entries getting flushed + * last or collectively arises, though the code allowing for that + * will need to be expanded and tested appropriately if that + * functionality is desired. + * * clear_on_unprotect: Boolean flag used only in PHDF5. When H5C is used * to implement the metadata cache In the parallel case, only * the cache with mpi rank 0 is allowed to actually write to @@ -578,7 +595,7 @@ typedef struct H5C_cache_entry_t haddr_t addr; size_t size; const H5C_class_t * type; - haddr_t tag; + haddr_t tag; hbool_t is_dirty; hbool_t dirtied; hbool_t is_protected; @@ -587,13 +604,15 @@ typedef struct H5C_cache_entry_t hbool_t is_pinned; hbool_t in_slist; hbool_t flush_marker; + hbool_t flush_me_last; #ifdef H5_HAVE_PARALLEL + hbool_t flush_me_collectively; hbool_t clear_on_unprotect; - hbool_t flush_immediately; + hbool_t flush_immediately; #endif /* H5_HAVE_PARALLEL */ hbool_t flush_in_progress; hbool_t destroy_in_progress; - hbool_t free_file_space_on_destroy; + hbool_t free_file_space_on_destroy; /* fields supporting the 'flush dependency' feature: */ @@ -1042,6 +1061,8 @@ typedef struct H5C_auto_size_ctl_t #define H5C__READ_ONLY_FLAG 0x0200 #define H5C__FREE_FILE_SPACE_FLAG 0x0800 #define H5C__TAKE_OWNERSHIP_FLAG 0x1000 +#define H5C__FLUSH_LAST_FLAG 0x2000 +#define H5C__FLUSH_COLLECTIVELY_FLAG 0x4000 #ifdef H5_HAVE_PARALLEL H5_DLL herr_t H5C_apply_candidate_list(H5F_t * f, diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 7cde7b6..da7d809 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -3902,7 +3902,9 @@ H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id, const hsize_t *old_dim) /* * Determine the chunks which need to be filled or removed */ - for(op_dim=0; op_dim<space_ndims; op_dim++) { + HDmemset(min_mod_chunk_off, 0, sizeof(min_mod_chunk_off)); + HDmemset(max_mod_chunk_off, 0, sizeof(max_mod_chunk_off)); + for(op_dim = 0; op_dim < space_ndims; op_dim++) { /* Calculate the largest offset of chunks that might need to be * modified in this dimension */ max_mod_chunk_off[op_dim] = chunk_dim[op_dim] * ((old_dim[op_dim] - 1) diff --git a/src/H5Dio.c b/src/H5Dio.c index 306fc59..7852b3e 100644 --- a/src/H5Dio.c +++ b/src/H5Dio.c @@ -1081,7 +1081,7 @@ H5D__ioinfo_adjust(H5D_io_info_t *io_info, const H5D_t *dset, hid_t dxpl_id, HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't retrieve MPI communicator") /* Check if we can set direct MPI-IO read/write functions */ - if((opt = H5D__mpio_opt_possible(io_info, file_space, mem_space, type_info, fm)) < 0) + if((opt = H5D__mpio_opt_possible(io_info, file_space, mem_space, type_info, fm, dx_plist)) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "invalid check for direct IO dataspace ") /* Check if we can use the optimized parallel I/O routines */ diff --git a/src/H5Dmpio.c b/src/H5Dmpio.c index 9b8fa27..c2d964e 100644 --- a/src/H5Dmpio.c +++ b/src/H5Dmpio.c @@ -156,10 +156,12 @@ static herr_t H5D__mpio_get_sum_chunk(const H5D_io_info_t *io_info, htri_t H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, const H5S_t *mem_space, const H5D_type_info_t *type_info, - const H5D_chunk_map_t *fm) + const H5D_chunk_map_t *fm, H5P_genplist_t *dx_plist) { - int local_opinion = TRUE; /* This process's idea of whether to perform collective I/O or not */ - int consensus; /* Consensus opinion of all processes */ + /* variables to set cause of broken collective I/O */ + int local_cause = 0; + int global_cause = 0; + int mpi_code; /* MPI error code */ htri_t ret_value = TRUE; @@ -171,51 +173,54 @@ H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, HDassert(file_space); HDassert(type_info); + /* For independent I/O, get out quickly and don't try to form consensus */ - if(io_info->dxpl_cache->xfer_mode == H5FD_MPIO_INDEPENDENT) + if(io_info->dxpl_cache->xfer_mode == H5FD_MPIO_INDEPENDENT) { + local_cause = H5D_MPIO_SET_INDEPENDENT; + global_cause = H5D_MPIO_SET_INDEPENDENT; HGOTO_DONE(FALSE); + } + + /* Optimized MPI types flag must be set and it must be collective IO */ + /* (Don't allow parallel I/O for the MPI-posix driver, since it doesn't do real collective I/O) */ + if(!(H5S_mpi_opt_types_g && io_info->dxpl_cache->xfer_mode == H5FD_MPIO_COLLECTIVE + && !IS_H5FD_MPIPOSIX(io_info->dset->oloc.file))) { + local_cause |= H5D_MPIO_SET_MPIPOSIX; + } /* end if */ /* Don't allow collective operations if datatype conversions need to happen */ if(!type_info->is_conv_noop) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_DATATYPE_CONVERSION; } /* end if */ /* Don't allow collective operations if data transform operations should occur */ if(!type_info->is_xform_noop) { - local_opinion = FALSE; - goto broadcast; - } /* end if */ - - /* Optimized MPI types flag must be set and it must be collective IO */ - /* (Don't allow parallel I/O for the MPI-posix driver, since it doesn't do real collective I/O) */ - if(!(H5S_mpi_opt_types_g && io_info->dxpl_cache->xfer_mode == H5FD_MPIO_COLLECTIVE - && !IS_H5FD_MPIPOSIX(io_info->dset->oloc.file))) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_DATA_TRANSFORMS; } /* end if */ /* Check whether these are both simple or scalar dataspaces */ if(!((H5S_SIMPLE == H5S_GET_EXTENT_TYPE(mem_space) || H5S_SCALAR == H5S_GET_EXTENT_TYPE(mem_space)) && (H5S_SIMPLE == H5S_GET_EXTENT_TYPE(file_space) || H5S_SCALAR == H5S_GET_EXTENT_TYPE(file_space)))) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES; } /* end if */ /* Can't currently handle point selections */ if(H5S_SEL_POINTS == H5S_GET_SELECT_TYPE(mem_space) || H5S_SEL_POINTS == H5S_GET_SELECT_TYPE(file_space)) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_POINT_SELECTIONS; } /* end if */ /* Dataset storage must be contiguous or chunked */ if(!(io_info->dset->shared->layout.type == H5D_CONTIGUOUS || io_info->dset->shared->layout.type == H5D_CHUNKED)) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; } /* end if */ + /* check if external-file storage is used */ + if (io_info->dset->shared->dcpl_cache.efl.nused > 0) { + local_cause |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; + } + /* The handling of memory space is different for chunking and contiguous * storage. For contiguous storage, mem_space and file_space won't change * when it it is doing disk IO. For chunking storage, mem_space will @@ -226,21 +231,28 @@ H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, /* Don't allow collective operations if filters need to be applied */ if(io_info->dset->shared->layout.type == H5D_CHUNKED) { if(io_info->dset->shared->dcpl_cache.pline.nused > 0) { - local_opinion = FALSE; - goto broadcast; + local_cause |= H5D_MPIO_FILTERS; } /* end if */ } /* end if */ -broadcast: /* Form consensus opinion among all processes about whether to perform * collective I/O */ - if(MPI_SUCCESS != (mpi_code = MPI_Allreduce(&local_opinion, &consensus, 1, MPI_INT, MPI_LAND, io_info->comm))) + if(MPI_SUCCESS != (mpi_code = MPI_Allreduce(&local_cause, &global_cause, 1, MPI_INT, MPI_BOR, io_info->comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Allreduce failed", mpi_code) - ret_value = consensus > 0 ? TRUE : FALSE; + ret_value = global_cause > 0 ? FALSE : TRUE; + done: + /* Write the local value of no-collective-cause to the DXPL. */ + if(H5P_set(dx_plist, H5D_MPIO_LOCAL_NO_COLLECTIVE_CAUSE_NAME, &local_cause) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "couldn't set local no collective cause property") + + /* Write the global value of no-collective-cause to the DXPL. */ + if(H5P_set(dx_plist, H5D_MPIO_GLOBAL_NO_COLLECTIVE_CAUSE_NAME, &global_cause) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "couldn't set global no collective cause property") + FUNC_LEAVE_NOAPI(ret_value) } /* H5D__mpio_opt_possible() */ diff --git a/src/H5Doh.c b/src/H5Doh.c index 37b0f52..abf76d0 100644 --- a/src/H5Doh.c +++ b/src/H5Doh.c @@ -446,7 +446,7 @@ done: static herr_t H5O__dset_flush(H5G_loc_t *obj_loc, hid_t dxpl_id) { - H5D_t *dset; /* Dataset opened */ + H5D_t *dset = NULL; /* Dataset opened */ H5O_type_t obj_type; /* Type of object at location */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5Dpkg.h b/src/H5Dpkg.h index dfc19b8..ed6da8f 100644 --- a/src/H5Dpkg.h +++ b/src/H5Dpkg.h @@ -693,7 +693,8 @@ H5_DLL herr_t H5D__chunk_collective_write(H5D_io_info_t *io_info, * memory and the file */ H5_DLL htri_t H5D__mpio_opt_possible(const H5D_io_info_t *io_info, const H5S_t *file_space, const H5S_t *mem_space, - const H5D_type_info_t *type_info, const H5D_chunk_map_t *fm); + const H5D_type_info_t *type_info, const H5D_chunk_map_t *fm, + H5P_genplist_t *dx_plist); #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5Dprivate.h b/src/H5Dprivate.h index 342c284..48c6ddd 100644 --- a/src/H5Dprivate.h +++ b/src/H5Dprivate.h @@ -74,6 +74,8 @@ #define H5D_XFER_MPIO_CHUNK_OPT_RATIO_NAME "mpio_chunk_opt_ratio" #define H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_NAME "actual_chunk_opt_mode" #define H5D_MPIO_ACTUAL_IO_MODE_NAME "actual_io_mode" +#define H5D_MPIO_LOCAL_NO_COLLECTIVE_CAUSE_NAME "local_no_collective_cause" /* cause of broken collective I/O in each process */ +#define H5D_MPIO_GLOBAL_NO_COLLECTIVE_CAUSE_NAME "global_no_collective_cause" /* cause of broken collective I/O in all processes */ #endif /* H5_HAVE_PARALLEL */ #define H5D_XFER_EDC_NAME "err_detect" /* EDC */ #define H5D_XFER_FILTER_CB_NAME "filter_cb" /* Filter callback function */ diff --git a/src/H5Eint.c b/src/H5Eint.c index 594a69a..76eaaf5 100644 --- a/src/H5Eint.c +++ b/src/H5Eint.c @@ -264,7 +264,10 @@ H5E_walk1_cb(int n, H5E_error1_t *err_desc, void *client_data) if(cls_ptr->lib_vers) eprint->cls.lib_vers = cls_ptr->lib_vers; - fprintf(stream, "%s-DIAG: Error detected in %s (%s) ", cls_ptr->cls_name, cls_ptr->lib_name, cls_ptr->lib_vers); + fprintf(stream, "%s-DIAG: Error detected in %s (%s) ", + (cls_ptr->cls_name ? cls_ptr->cls_name : "(null)"), + (cls_ptr->lib_name ? cls_ptr->lib_name : "(null)"), + (cls_ptr->lib_vers ? cls_ptr->lib_vers : "(null)")); /* try show the process or thread id in multiple processes cases*/ #ifdef H5_HAVE_PARALLEL @@ -387,7 +390,10 @@ H5E_walk2_cb(unsigned n, const H5E_error2_t *err_desc, void *client_data) if(cls_ptr->lib_vers) eprint->cls.lib_vers = cls_ptr->lib_vers; - fprintf(stream, "%s-DIAG: Error detected in %s (%s) ", cls_ptr->cls_name, cls_ptr->lib_name, cls_ptr->lib_vers); + fprintf(stream, "%s-DIAG: Error detected in %s (%s) ", + (cls_ptr->cls_name ? cls_ptr->cls_name : "(null)"), + (cls_ptr->lib_name ? cls_ptr->lib_name : "(null)"), + (cls_ptr->lib_vers ? cls_ptr->lib_vers : "(null)")); /* try show the process or thread id in multiple processes cases*/ #ifdef H5_HAVE_PARALLEL @@ -1051,13 +1051,15 @@ H5F_dest(H5F_t *f, hid_t dxpl_id, hbool_t flush) * Only try to flush the file if it was opened with write access, and if * the caller requested a flush. */ - if((f->shared->flags & H5F_ACC_RDWR) && flush) + if((H5F_ACC_RDWR & H5F_INTENT(f)) && flush) if(H5F_flush(f, dxpl_id, TRUE) < 0) + /* Push error, but keep going*/ HDONE_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache") /* Release the external file cache */ if(f->shared->efc) { if(H5F_efc_destroy(f->shared->efc) < 0) + /* Push error, but keep going*/ HDONE_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "can't destroy external file cache") f->shared->efc = NULL; } /* end if */ @@ -1075,6 +1077,14 @@ H5F_dest(H5F_t *f, hid_t dxpl_id, hbool_t flush) if(H5MF_close(f, dxpl_id) < 0) /* Push error, but keep going*/ HDONE_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "can't release file free space info") + + /* Flush the file again (if requested), as shutting down the + * free space manager may dirty some data structures again. + */ + if(flush) + if(H5F_flush(f, dxpl_id, TRUE) < 0) + /* Push error, but keep going*/ + HDONE_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache") } /* end if */ /* Unpin the superblock, since we're about to destroy the cache */ @@ -71,7 +71,6 @@ static herr_t H5FD_pl_close(hid_t driver_id, herr_t (*free_func)(void *), void *pl); static herr_t H5FD_free_cls(H5FD_class_t *cls); static herr_t H5FD_fapl_copy(hid_t driver_id, const void *fapl, void **copied_fapl); -static herr_t H5FD_dxpl_copy(hid_t driver_id, const void *dxpl, void **copied_dxpl); static int H5FD_query(const H5FD_t *f, unsigned long *flags/*out*/); static int H5FD_driver_query(const H5FD_class_t *driver, unsigned long *flags/*out*/); @@ -456,13 +455,9 @@ H5FD_get_class(hid_t id) if(H5P_get(plist, H5F_ACS_FILE_DRV_ID_NAME, &driver_id) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get driver ID") ret_value = H5FD_get_class(driver_id); - } else if(TRUE == H5P_isa_class(id, H5P_DATASET_XFER)) { - if(H5P_get(plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get driver ID") - ret_value = H5FD_get_class(driver_id); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a driver id, file access property list or data transfer property list") - } + } /* end if */ + else + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a driver id or file access property list") } /* end if */ done: @@ -826,125 +821,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_dxpl_open - * - * Purpose: Mark a driver as used by a data transfer property list - * - * Return: Success: non-negative - * - * Failure: negative - * - * Programmer: Quincey Koziol - * Thursday, October 23, 2003 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -herr_t -H5FD_dxpl_open(H5P_genplist_t *plist, hid_t driver_id, const void *driver_info) -{ - void *copied_driver_info = NULL; /* Temporary VFL driver info */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Increment the reference count on the driver and copy the driver info */ - if(H5I_inc_ref(driver_id, FALSE) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTINC, FAIL, "can't increment VFL driver ID") - if(H5FD_dxpl_copy(driver_id, driver_info, &copied_driver_info) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTCOPY, FAIL, "can't copy VFL driver") - - /* Set the driver information for the new property list */ - if(H5P_set(plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set VFL driver ID") - if(H5P_set(plist, H5D_XFER_VFL_INFO_NAME, &copied_driver_info) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTSET, FAIL, "can't set VFL driver info") - -done: - if(ret_value < 0) - if(copied_driver_info && H5FD_dxpl_close(driver_id, copied_driver_info) < 0) - HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "can't close copy of driver info") - - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5FD_dxpl_open() */ - - -/*------------------------------------------------------------------------- - * Function: H5FD_dxpl_copy - * - * Purpose: Copies the driver-specific part of the data transfer property - * list. - * - * Return: Success: non-negative - * - * Failure: negative - * - * Programmer: Robb Matzke - * Tuesday, August 3, 1999 - * - *------------------------------------------------------------------------- - */ -static herr_t -H5FD_dxpl_copy(hid_t driver_id, const void *old_dxpl, void **copied_dxpl) -{ - H5FD_class_t *driver; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - /* Check args */ - if(NULL == (driver = (H5FD_class_t *)H5I_object(driver_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a driver ID") - - /* Copy the file access property list */ - if(H5FD_pl_copy(driver->dxpl_copy, driver->dxpl_size, old_dxpl, copied_dxpl) < 0) - HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, FAIL, "can't copy driver data transfer property list") - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5FD_dxpl_copy() */ - - -/*------------------------------------------------------------------------- - * Function: H5FD_dxpl_close - * - * Purpose: Closes a driver for a dataset transfer property list - * - * Return: Success: non-negative - * Failure: negative - * - * Programmer: Robb Matzke - * Tuesday, August 3, 1999 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -herr_t -H5FD_dxpl_close(hid_t driver_id, void *dxpl) -{ - H5FD_class_t *driver; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI(FAIL) - - /* Check args */ - if(driver_id > 0) { - if(NULL == (driver = (H5FD_class_t *)H5I_object(driver_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a driver ID") - - /* Close the driver for the property list */ - if(H5FD_pl_close(driver_id, driver->dxpl_free, dxpl) < 0) - HGOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "driver fapl_free request failed") - } /* end if */ - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5FD_dxpl_close() */ - - -/*------------------------------------------------------------------------- * Function: H5FDopen * * Purpose: Opens a file named NAME for the type(s) of access described @@ -1456,9 +1332,9 @@ H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size) if(size == 0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, HADDR_UNDEF, "zero-size request") if(H5P_DEFAULT == dxpl_id) - dxpl_id= H5P_DATASET_XFER_DEFAULT; + dxpl_id = H5P_DATASET_XFER_DEFAULT; else - if(TRUE != H5P_isa_class(dxpl_id,H5P_DATASET_XFER)) + if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, HADDR_UNDEF, "not a data transfer property list") /* Do the real work */ @@ -1508,9 +1384,9 @@ H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t siz if(type < H5FD_MEM_DEFAULT || type >= H5FD_MEM_NTYPES) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid request type") if(H5P_DEFAULT == dxpl_id) - dxpl_id= H5P_DATASET_XFER_DEFAULT; + dxpl_id = H5P_DATASET_XFER_DEFAULT; else - if(TRUE!=H5P_isa_class(dxpl_id,H5P_DATASET_XFER)) + if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data transfer property list") /* Do the real work */ @@ -1796,7 +1672,7 @@ H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size /* Get the default dataset transfer property list if the user didn't provide one */ if(H5P_DEFAULT == dxpl_id) - dxpl_id= H5P_DATASET_XFER_DEFAULT; + dxpl_id = H5P_DATASET_XFER_DEFAULT; else if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data transfer property list") @@ -1965,7 +1841,7 @@ H5FDtruncate(H5FD_t *file, hid_t dxpl_id, unsigned closing) if(H5P_DEFAULT == dxpl_id) dxpl_id = H5P_DATASET_XFER_DEFAULT; else - if(TRUE != H5P_isa_class(dxpl_id,H5P_DATASET_XFER)) + if(TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data transfer property list") /* Do the real work */ diff --git a/src/H5FDcore.c b/src/H5FDcore.c index 1fef36c..932e2af 100644 --- a/src/H5FDcore.c +++ b/src/H5FDcore.c @@ -184,7 +184,7 @@ static const H5FD_class_t H5FD_core_g = { H5FD_core_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }; @@ -427,8 +427,9 @@ H5FD_core_open(const char *name, unsigned flags, hid_t fapl_id, HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, NULL, "maxaddr overflow") HDassert(H5P_DEFAULT != fapl_id); if(NULL == (plist = (H5P_genplist_t *)H5I_object(fapl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") - fa = (H5FD_core_fapl_t *)H5P_get_driver_info(plist); + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") + if(NULL == (fa = (H5FD_core_fapl_t *)H5P_get_driver_info(plist))) + HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, NULL, "bad VFL driver info") /* Build the open flags */ o_flags = (H5F_ACC_RDWR & flags) ? O_RDWR : O_RDONLY; @@ -443,6 +444,7 @@ H5FD_core_open(const char *name, unsigned flags, hid_t fapl_id, /* If the file image exists and this is an open, make sure the file doesn't exist */ HDassert(((file_image_info.buffer != NULL) && (file_image_info.size > 0)) || ((file_image_info.buffer == NULL) && (file_image_info.size == 0))); + HDmemset(&sb, 0, sizeof(sb)); if((file_image_info.buffer != NULL) && !(H5F_ACC_CREAT & flags)) { if(HDopen(name, o_flags, 0666) >= 0) HGOTO_ERROR(H5E_FILE, H5E_FILEEXISTS, NULL, "file already exists") @@ -462,7 +464,7 @@ H5FD_core_open(const char *name, unsigned flags, hid_t fapl_id, * store is off is when the backing_store flag is off and H5F_ACC_CREAT is * on. */ else if(fa->backing_store || !(H5F_ACC_CREAT & flags)) { - if(fa && (fd = HDopen(name, o_flags, 0666)) < 0) + if((fd = HDopen(name, o_flags, 0666)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") if(HDfstat(fd, &sb) < 0) HSYS_GOTO_ERROR(H5E_FILE, H5E_BADFILE, NULL, "unable to fstat file") @@ -479,7 +481,7 @@ H5FD_core_open(const char *name, unsigned flags, hid_t fapl_id, * default value. But if the file access property list was zero then use * the default value instead. */ - file->increment = (fa && fa->increment>0) ? fa->increment : H5FD_CORE_INCREMENT; + file->increment = (fa->increment>0) ? fa->increment : H5FD_CORE_INCREMENT; /* If save data in backing store. */ file->backing_store = fa->backing_store; diff --git a/src/H5FDdirect.c b/src/H5FDdirect.c index 218a1dd..4721a44 100644 --- a/src/H5FDdirect.c +++ b/src/H5FDdirect.c @@ -205,7 +205,7 @@ static const H5FD_class_t H5FD_direct_g = { H5FD_direct_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }; /* Declare a free list to manage the H5FD_direct_t struct */ diff --git a/src/H5FDfamily.c b/src/H5FDfamily.c index 6f6d757..f051269 100644 --- a/src/H5FDfamily.c +++ b/src/H5FDfamily.c @@ -82,18 +82,11 @@ typedef struct H5FD_family_fapl_t { hid_t memb_fapl_id; /*file access property list of each memb*/ } H5FD_family_fapl_t; -/* Driver specific data transfer properties */ -typedef struct H5FD_family_dxpl_t { - hid_t memb_dxpl_id; /*data xfer property list of each memb */ -} H5FD_family_dxpl_t; - /* Callback prototypes */ static herr_t H5FD_family_term(void); static void *H5FD_family_fapl_get(H5FD_t *_file); static void *H5FD_family_fapl_copy(const void *_old_fa); static herr_t H5FD_family_fapl_free(void *_fa); -static void *H5FD_family_dxpl_copy(const void *_old_dx); -static herr_t H5FD_family_dxpl_free(void *_dx); static hsize_t H5FD_family_sb_size(H5FD_t *_file); static herr_t H5FD_family_sb_encode(H5FD_t *_file, char *name/*out*/, unsigned char *buf/*out*/); @@ -128,9 +121,9 @@ static const H5FD_class_t H5FD_family_g = { H5FD_family_fapl_get, /*fapl_get */ H5FD_family_fapl_copy, /*fapl_copy */ H5FD_family_fapl_free, /*fapl_free */ - sizeof(H5FD_family_dxpl_t), /*dxpl_size */ - H5FD_family_dxpl_copy, /*dxpl_copy */ - H5FD_family_dxpl_free, /*dxpl_free */ + 0, /*dxpl_size */ + NULL, /*dxpl_copy */ + NULL, /*dxpl_free */ H5FD_family_open, /*open */ H5FD_family_close, /*close */ H5FD_family_cmp, /*cmp */ @@ -148,7 +141,7 @@ static const H5FD_class_t H5FD_family_g = { H5FD_family_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }; @@ -482,92 +475,6 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_family_dxpl_copy - * - * Purpose: Copes the family-specific data transfer properties. - * - * Return: Success: Ptr to new property list - * - * Failure: NULL - * - * Programmer: Robb Matzke - * Wednesday, August 4, 1999 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void * -H5FD_family_dxpl_copy(const void *_old_dx) -{ - const H5FD_family_dxpl_t *old_dx = (const H5FD_family_dxpl_t*)_old_dx; - H5FD_family_dxpl_t *new_dx = NULL; - H5P_genplist_t *plist; /* Property list pointer */ - void *ret_value; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - if(NULL == (new_dx = (H5FD_family_dxpl_t *)H5MM_malloc(sizeof(H5FD_family_dxpl_t)))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") - - HDmemcpy(new_dx, old_dx, sizeof(H5FD_family_dxpl_t)); - - if(old_dx->memb_dxpl_id == H5P_DATASET_XFER_DEFAULT) { - if(H5I_inc_ref(new_dx->memb_dxpl_id, FALSE)<0) - HGOTO_ERROR(H5E_VFL, H5E_CANTINC, NULL, "unable to increment ref count on VFL driver") - } /* end if */ - else { - if(NULL == (plist = (H5P_genplist_t *)H5I_object(old_dx->memb_dxpl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") - new_dx->memb_dxpl_id = H5P_copy_plist(plist, FALSE); - } /* end else */ - - /* Set return value */ - ret_value=new_dx; - -done: - if(ret_value==NULL) { - if(new_dx!=NULL) - H5MM_xfree(new_dx); - } /* end if */ - FUNC_LEAVE_NOAPI(ret_value) -} - - -/*------------------------------------------------------------------------- - * Function: H5FD_family_dxpl_free - * - * Purpose: Frees the family-specific data transfer properties. - * - * Return: Success: 0 - * - * Failure: -1 - * - * Programmer: Robb Matzke - * Wednesday, August 4, 1999 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5FD_family_dxpl_free(void *_dx) -{ - H5FD_family_dxpl_t *dx = (H5FD_family_dxpl_t*)_dx; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - if(H5I_dec_ref(dx->memb_dxpl_id) < 0) - HGOTO_ERROR(H5E_VFL, H5E_CANTDEC, FAIL, "can't close driver ID") - H5MM_xfree(dx); - -done: - FUNC_LEAVE_NOAPI(ret_value) -} - - -/*------------------------------------------------------------------------- * Function: H5FD_family_sb_size * * Purpose: Returns the size of the private information to be stored in @@ -1239,7 +1146,6 @@ H5FD_family_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, si { H5FD_family_t *file = (H5FD_family_t*)_file; unsigned char *buf = (unsigned char*)_buf; - hid_t memb_dxpl_id = H5P_DATASET_XFER_DEFAULT; haddr_t sub; size_t req; hsize_t tempreq; @@ -1255,13 +1161,6 @@ H5FD_family_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, si */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") - if(H5P_DATASET_XFER_DEFAULT != dxpl_id && H5FD_FAMILY == H5P_get_driver(plist)) { - H5FD_family_dxpl_t *dx = (H5FD_family_dxpl_t *)H5P_get_driver_info(plist); - - HDassert(TRUE == H5P_isa_class(dxpl_id, H5P_DATASET_XFER)); - assert(dx); - memb_dxpl_id = dx->memb_dxpl_id; - } /* end if */ /* Read from each member */ while(size > 0) { @@ -1279,7 +1178,7 @@ H5FD_family_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, si assert(u<file->nmembs); - if (H5FDread(file->memb[u], type, memb_dxpl_id, sub, req, buf)<0) + if (H5FDread(file->memb[u], type, dxpl_id, sub, req, buf)<0) HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "member file read failed") addr += req; @@ -1316,7 +1215,6 @@ H5FD_family_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, s { H5FD_family_t *file = (H5FD_family_t*)_file; const unsigned char *buf = (const unsigned char*)_buf; - hid_t memb_dxpl_id = H5P_DATASET_XFER_DEFAULT; haddr_t sub; size_t req; hsize_t tempreq; @@ -1332,13 +1230,6 @@ H5FD_family_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, s */ if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") - if(H5P_DATASET_XFER_DEFAULT != dxpl_id && H5FD_FAMILY == H5P_get_driver(plist)) { - H5FD_family_dxpl_t *dx = (H5FD_family_dxpl_t *)H5P_get_driver_info(plist); - - HDassert(TRUE == H5P_isa_class(dxpl_id, H5P_DATASET_XFER)); - HDassert(dx); - memb_dxpl_id = dx->memb_dxpl_id; - } /* end if */ /* Write to each member */ while (size>0) { @@ -1356,7 +1247,7 @@ H5FD_family_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, s assert(u<file->nmembs); - if (H5FDwrite(file->memb[u], type, memb_dxpl_id, sub, req, buf)<0) + if (H5FDwrite(file->memb[u], type, dxpl_id, sub, req, buf)<0) HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "member file write failed") addr += req; diff --git a/src/H5FDlog.c b/src/H5FDlog.c index b2c6398..6a2425c 100644 --- a/src/H5FDlog.c +++ b/src/H5FDlog.c @@ -233,7 +233,7 @@ static const H5FD_class_t H5FD_log_g = { H5FD_log_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }; /* Declare a free list to manage the H5FD_log_t struct */ diff --git a/src/H5FDmpi.c b/src/H5FDmpi.c index 01c28e6..866a2cf 100644 --- a/src/H5FDmpi.c +++ b/src/H5FDmpi.c @@ -56,12 +56,15 @@ char H5FD_mpi_native_g[] = "native"; int H5FD_mpi_get_rank(const H5FD_t *file) { - const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls); + const H5FD_class_mpi_t *cls; + int ret_value; FUNC_ENTER_NOAPI(FAIL) - assert(file && cls); + assert(file); + cls = (const H5FD_class_mpi_t *)(file->cls); + assert(cls); assert(cls->get_rank); /* All MPI drivers must implement this */ /* Dispatch to driver */ @@ -92,12 +95,14 @@ done: int H5FD_mpi_get_size(const H5FD_t *file) { - const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls); + const H5FD_class_mpi_t *cls; int ret_value; FUNC_ENTER_NOAPI(FAIL) - assert(file && cls); + assert(file); + cls = (const H5FD_class_mpi_t *)(file->cls); + assert(cls); assert(cls->get_size); /* All MPI drivers must implement this */ /* Dispatch to driver */ @@ -128,12 +133,14 @@ done: MPI_Comm H5FD_mpi_get_comm(const H5FD_t *file) { - const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls); + const H5FD_class_mpi_t *cls; MPI_Comm ret_value; FUNC_ENTER_NOAPI(MPI_COMM_NULL) - assert(file && cls); + assert(file); + cls = (const H5FD_class_mpi_t *)(file->cls); + assert(cls); assert(cls->get_comm); /* All MPI drivers must implement this */ /* Dispatch to driver */ diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c index 6dbe831..cac101b 100644 --- a/src/H5FDmpio.c +++ b/src/H5FDmpio.c @@ -127,7 +127,7 @@ static const H5FD_class_mpi_t H5FD_mpio_g = { H5FD_mpio_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }, /* End of superclass information */ H5FD_mpio_mpi_rank, /*get_rank */ H5FD_mpio_mpi_size, /*get_size */ @@ -449,27 +449,23 @@ done: * Use collective I/O access. * * Return: Success: Non-negative - * * Failure: Negative * * Programmer: Albert Cheng * April 2, 1998 * - * Modifications: - * Robb Matzke, 1999-08-06 - * Modified to work with the virtual file layer. *------------------------------------------------------------------------- */ herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iDt", dxpl_id, xfer_mode); - if(dxpl_id==H5P_DEFAULT) + if(dxpl_id == H5P_DEFAULT) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list") /* Check arguments */ @@ -479,15 +475,12 @@ H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "incorrect xfer_mode") /* Set the transfer mode */ - if (H5P_set(plist,H5D_XFER_IO_XFER_MODE_NAME,&xfer_mode)<0) + if(H5P_set(plist, H5D_XFER_IO_XFER_MODE_NAME, &xfer_mode) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - /* Initialize driver-specific properties */ - ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL); - done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_dxpl_mpio() */ /*------------------------------------------------------------------------- @@ -505,63 +498,54 @@ done: * Programmer: Albert Cheng * April 2, 1998 * - * Modifications: - * Robb Matzke, 1999-08-06 - * Modified to work with the virtual file layer. *------------------------------------------------------------------------- */ herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode/*out*/) { - H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* Return value */ + H5P_genplist_t *plist; /* Property list pointer */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "ix", dxpl_id, xfer_mode); if(NULL == (plist = H5P_object_verify(dxpl_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl") - if(H5FD_MPIO != H5P_get_driver(plist)) - HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "incorrect VFL driver") /* Get the transfer mode */ - if (xfer_mode) - if (H5P_get(plist,H5D_XFER_IO_XFER_MODE_NAME,xfer_mode)<0) + if(xfer_mode) + if(H5P_get(plist, H5D_XFER_IO_XFER_MODE_NAME, xfer_mode) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to get value") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_dxpl_mpio() */ + /*------------------------------------------------------------------------- * Function: H5Pset_dxpl_mpio_collective_opt - -Purpose: - To set a flag to choose linked chunk IO or multi-chunk IO without - involving decision-making inside HDF5 - -Description: - The library will do linked chunk IO or multi-chunk IO without - involving communications for decision-making process. - The library won't behave as it asks for only when we find - that the low-level MPI-IO package doesn't support this. - -Parameters: - hid_t dxpl_id in: Data transfer property list identifier - H5FD_mpio_chunk_opt_t in: The optimization flag for linked chunk IO - or multi-chunk IO. - - -Returns: -Returns a non-negative value if successful. Otherwise returns a negative value. -* + * + * Purpose: To set a flag to choose linked chunk I/O or multi-chunk I/O + * without involving decision-making inside HDF5 + * + * Note: The library will do linked chunk I/O or multi-chunk I/O without + * involving communications for decision-making process. + * The library won't behave as it asks for only when we find + * that the low-level MPI-IO package doesn't support this. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Kent Yang + * ? ?, ? + * *------------------------------------------------------------------------- */ herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iDc", dxpl_id, opt_mode); @@ -577,9 +561,6 @@ H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mo if(H5P_set(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME, &opt_mode) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - /* Initialize driver-specific properties */ - ret_value = H5P_set_driver(plist, H5FD_MPIO, NULL); - done: FUNC_LEAVE_API(ret_value) } /* end H5Pset_dxpl_mpio_collective_opt() */ @@ -587,33 +568,28 @@ done: /*------------------------------------------------------------------------- * Function: H5Pset_dxpl_mpio_chunk_opt - -Purpose: - To set a flag to choose linked chunk IO or multi-chunk IO without - involving decision-making inside HDF5 - -Description: - The library will do linked chunk IO or multi-chunk IO without - involving communications for decision-making process. - The library won't behave as it asks for only when we find - that the low-level MPI-IO package doesn't support this. - -Parameters: - hid_t dxpl_id in: Data transfer property list identifier - H5FD_mpio_chunk_opt_t in: The optimization flag for linked chunk IO - or multi-chunk IO. - - -Returns: -Returns a non-negative value if successful. Otherwise returns a negative value. -* + * + * Purpose: To set a flag to choose linked chunk I/O or multi-chunk I/O + * without involving decision-making inside HDF5 + * + * Note: The library will do linked chunk I/O or multi-chunk I/O without + * involving communications for decision-making process. + * The library won't behave as it asks for only when we find + * that the low-level MPI-IO package doesn't support this. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Kent Yang + * ? ?, ? + * *------------------------------------------------------------------------- */ herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iDh", dxpl_id, opt_mode); @@ -626,41 +602,36 @@ H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl") /* Set the transfer mode */ - if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_HARD_NAME,&opt_mode)<0) + if(H5P_set(plist, H5D_XFER_MPIO_CHUNK_OPT_HARD_NAME, &opt_mode) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - /* Initialize driver-specific properties */ - ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL); - done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_dxpl_mpio_chunk_opt() */ /*------------------------------------------------------------------------- * Function: H5Pset_dxpl_mpio_chunk_opt_num - -Purpose: - To set a threshold for doing linked chunk IO - -Description: - If the number is greater than the threshold set by the user, - the library will do linked chunk IO; otherwise, IO will be done for every chunk. - -Parameters: - hid_t dxpl_id in: Data transfer property list identifier - unsigned num_proc_per_chunk in: the threshold of the average number of chunks selected by each process - -Returns: -Returns a non-negative value if successful. Otherwise returns a negative value. -* + * + * Purpose: To set a threshold for doing linked chunk IO + * + * Note: If the number is greater than the threshold set by the user, + * the library will do linked chunk I/O; otherwise, I/O will be + * done for every chunk. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Kent Yang + * ? ?, ? + * *------------------------------------------------------------------------- */ herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iIu", dxpl_id, num_chunk_per_proc); @@ -673,41 +644,39 @@ H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl") /* Set the transfer mode */ - if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_NUM_NAME,&num_chunk_per_proc)<0) + if(H5P_set(plist, H5D_XFER_MPIO_CHUNK_OPT_NUM_NAME, &num_chunk_per_proc) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - /* Initialize driver-specific properties */ - ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL); - done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_dxpl_mpio_chunk_opt_num() */ /*------------------------------------------------------------------------- * Function: H5Pset_dxpl_mpio_chunk_opt_ratio - -Purpose: - To set a threshold for doing collective IO for each chunk -Description: - The library will calculate the percentage of the number of process holding selections at each chunk. If that percentage of number of process in the individual chunk is greater than the threshold set by the user, the library will do collective chunk IO for this chunk; otherwise, independent IO will be done for this chunk. -Parameters: - hid_t dxpl_id - in: Data transfer property list identifier - unsigned percent_num_proc_per_chunk - in: the threshold of the percentage of the number of process holding selections per chunk -Returns: -Returns a non-negative value if successful. Otherwise returns a negative value. - - -* + * + * Purpose: To set a threshold for doing collective I/O for each chunk + * + * Note: The library will calculate the percentage of the number of + * process holding selections at each chunk. If that percentage + * of number of process in the individual chunk is greater than + * the threshold set by the user, the library will do collective + * chunk I/O for this chunk; otherwise, independent I/O will be + * done for this chunk. + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Kent Yang + * ? ?, ? + * *------------------------------------------------------------------------- */ herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iIu", dxpl_id, percent_num_proc_per_chunk); @@ -720,15 +689,12 @@ H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_ch HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl") /* Set the transfer mode */ - if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_RATIO_NAME,&percent_num_proc_per_chunk)<0) + if(H5P_set(plist, H5D_XFER_MPIO_CHUNK_OPT_RATIO_NAME, &percent_num_proc_per_chunk) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - /* Initialize driver-specific properties */ - ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL); - done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_dxpl_mpio_chunk_opt_ratio() */ /*------------------------------------------------------------------------- @@ -745,10 +711,6 @@ done: * Programmer: Robb Matzke * Friday, August 13, 1999 * - * Modifications: - * Albert Cheng, 2003-04-17 - * Duplicate the communicator and Info object so that the new - * property list is insulated from the old one. *------------------------------------------------------------------------- */ static void * @@ -790,8 +752,6 @@ done: * Programmer: Albert Cheng * Jan 8, 2003 * - * Modifications: - * *------------------------------------------------------------------------- */ static void * diff --git a/src/H5FDmpiposix.c b/src/H5FDmpiposix.c index e6c23f0..261f427 100644 --- a/src/H5FDmpiposix.c +++ b/src/H5FDmpiposix.c @@ -37,15 +37,15 @@ #define H5_INTERFACE_INIT_FUNC H5FD_mpiposix_init_interface -#include "H5private.h" /* Generic Functions */ -#include "H5ACprivate.h" /* Metadata cache */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* File access */ -#include "H5FDprivate.h" /* File drivers */ -#include "H5FDmpi.h" /* MPI-based file drivers */ -#include "H5Iprivate.h" /* IDs */ -#include "H5MMprivate.h" /* Memory management */ -#include "H5Pprivate.h" /* Property lists */ +#include "H5private.h" /* Generic Functions */ +#include "H5ACprivate.h" /* Metadata cache */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fprivate.h" /* File access */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5FDmpi.h" /* MPI-based file drivers */ +#include "H5Iprivate.h" /* IDs */ +#include "H5MMprivate.h" /* Memory management */ +#include "H5Pprivate.h" /* Property lists */ /* Features: * H5_HAVE_GPFS -- issue gpfs_fcntl() calls to hopefully improve @@ -71,107 +71,101 @@ */ static hid_t H5FD_MPIPOSIX_g = 0; -/* File operations */ -#define OP_UNKNOWN 0 -#define OP_READ 1 -#define OP_WRITE 2 +/* Since Windows doesn't follow the rest of the world when it comes + * to POSIX I/O types, some typedefs and constants are needed to avoid + * making the code messy with #ifdefs. + */ +#ifdef H5_HAVE_WIN32_API +typedef unsigned int h5_mpiposix_io_t; +typedef int h5_mpiposix_io_ret_t; +static int H5_MPIPOSIX_MAX_IO_BYTES_g = INT_MAX; +#else +/* Unix, everyone else */ +typedef size_t h5_mpiposix_io_t; +typedef ssize_t h5_mpiposix_io_ret_t; +static size_t H5_MPIPOSIX_MAX_IO_BYTES_g = SSIZET_MAX; +#endif /* H5_HAVE_WIN32_API */ /* * The description of a file belonging to this driver. - * The EOF value - * is only used just after the file is opened in order for the library to - * determine whether the file is empty, truncated, or okay. The MPIPOSIX driver - * doesn't bother to keep it updated since it's an expensive operation. + * The EOF value is only used just after the file is opened in order for the + * library to determine whether the file is empty, truncated, or okay. The + * MPIPOSIX driver doesn't bother to keep it updated since it's an expensive + * operation. */ typedef struct H5FD_mpiposix_t { - H5FD_t pub; /*public stuff, must be first */ - int fd; /*the unix file handle */ - MPI_Comm comm; /*communicator */ - int mpi_rank; /* This process's rank */ - int mpi_size; /* Total number of processes */ - haddr_t eof; /*end-of-file marker */ - haddr_t eoa; /*end-of-address marker */ - haddr_t last_eoa; /* Last known end-of-address marker */ - haddr_t pos; /* Current file I/O position */ - int op; /* Last file I/O operation */ - hsize_t naccess; /* Number of (write) accesses to file */ + H5FD_t pub; /* public stuff, must be first */ + int fd; /* the unix file handle */ + MPI_Comm comm; /* communicator */ + int mpi_rank; /* This process's rank */ + int mpi_size; /* Total number of processes */ + haddr_t eof; /* end-of-file marker */ + haddr_t eoa; /* end-of-address marker */ + haddr_t last_eoa; /* Last known end-of-address marker */ + haddr_t pos; /* Current file I/O position */ + H5FD_file_op_t op; /* Last file I/O operation */ + hsize_t naccess; /* Number of (write) accesses to file */ #ifdef H5_HAVE_GPFS - size_t blksize; /* Block size of file system */ + size_t blksize; /* Block size of file system */ #endif - hbool_t use_gpfs; /* Use GPFS to write things */ + hbool_t use_gpfs; /* Use GPFS to write things */ #ifndef H5_HAVE_WIN32_API - /* - * On most systems the combination of device and i-node number uniquely - * identify a file. + /* On most systems the combination of device and i-node number uniquely + * identify a file. Note that Cygwin, MinGW and other Windows POSIX + * environments have the stat function (which fakes inodes) + * and will use the 'device + inodes' scheme as opposed to the + * Windows code further below. */ - dev_t device; /*file device number */ - ino_t inode; /*file i-node number */ + dev_t device; /* file device number */ +#ifdef H5_VMS + ino_t inode[3]; /* file i-node number */ #else - /* - * On H5_HAVE_WIN32_API the low-order word of a unique identifier associated with the - * file and the volume serial number uniquely identify a file. This number - * (which, both? -rpm) may change when the system is restarted or when the - * file is opened. After a process opens a file, the identifier is - * constant until the file is closed. An application can use this - * identifier and the volume serial number to determine whether two - * handles refer to the same file. + ino_t inode; /* file i-node number */ +#endif /* H5_VMS */ +#else + /* Files in windows are uniquely identified by the volume serial + * number and the file index (both low and high parts). + * + * There are caveats where these numbers can change, especially + * on FAT file systems. On NTFS, however, a file should keep + * those numbers the same until renamed or deleted (though you + * can use ReplaceFile() on NTFS to keep the numbers the same + * while renaming). + * + * See the MSDN "BY_HANDLE_FILE_INFORMATION Structure" entry for + * more information. + * + * http://msdn.microsoft.com/en-us/library/aa363788(v=VS.85).aspx */ - int fileindexlo; - int fileindexhi; -#endif + DWORD nFileIndexLow; + DWORD nFileIndexHigh; + DWORD dwVolumeSerialNumber; + + HANDLE hFile; /* Native windows file handle */ +#endif /* H5_HAVE_WIN32_API */ } H5FD_mpiposix_t; /* - * This driver supports systems that have the lseek64() function by defining - * some macros here so we don't have to have conditional compilations later - * throughout the code. - * - * file_offset_t: The datatype for file offsets, the second argument of - * the lseek() or lseek64() call. - * - * file_seek: The function which adjusts the current file position, - * either lseek() or lseek64(). - */ -/* adding for windows NT file system support. */ - -#ifdef H5_HAVE_LSEEK64 -# define file_offset_t off64_t -# define file_seek lseek64 -# define file_truncate ftruncate64 -#elif defined (H5_HAVE_WIN32_API) -# /*MSVC*/ -# define file_offset_t __int64 -# define file_seek _lseeki64 -# define file_truncate _ftruncatei64 -#else -# define file_offset_t off_t -# define file_seek HDlseek -# define file_truncate HDftruncate -#endif - -/* * These macros check for overflow of various quantities. These macros - * assume that file_offset_t is signed and haddr_t and size_t are unsigned. + * assume that HDoff_t is signed and haddr_t and size_t are unsigned. * - * ADDR_OVERFLOW: Checks whether a file address of type `haddr_t' - * is too large to be represented by the second argument - * of the file seek function. + * ADDR_OVERFLOW: Checks whether a file address of type `haddr_t' + * is too large to be represented by the second argument + * of the file seek function. * - * SIZE_OVERFLOW: Checks whether a buffer size of type `hsize_t' is too - * large to be represented by the `size_t' type. + * SIZE_OVERFLOW: Checks whether a buffer size of type `hsize_t' is too + * large to be represented by the `size_t' type. * - * REGION_OVERFLOW: Checks whether an address and size pair describe data - * which can be addressed entirely by the second - * argument of the file seek function. + * REGION_OVERFLOW: Checks whether an address and size pair describe data + * which can be addressed entirely by the second + * argument of the file seek function. */ -#define MAXADDR (((haddr_t)1<<(8*sizeof(file_offset_t)-1))-1) -#define ADDR_OVERFLOW(A) (HADDR_UNDEF==(A) || \ - ((A) & ~(haddr_t)MAXADDR)) -#define SIZE_OVERFLOW(Z) ((Z) & ~(hsize_t)MAXADDR) -#define REGION_OVERFLOW(A,Z) (ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || \ - sizeof(file_offset_t)<sizeof(size_t) || \ - HADDR_UNDEF==(A)+(Z) || \ - (file_offset_t)((A)+(Z))<(file_offset_t)(A)) +#define MAXADDR (((haddr_t)1 << (8*sizeof(HDoff_t) - 1)) - 1) +#define ADDR_OVERFLOW(A) (HADDR_UNDEF == (A) || ((A) & ~(haddr_t)MAXADDR)) +#define SIZE_OVERFLOW(Z) ((Z) & ~(hsize_t)MAXADDR) +#define REGION_OVERFLOW(A,Z) (ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || \ + HADDR_UNDEF == (A) + (Z) || \ + (HDoff_t)((A) + (Z)) < (HDoff_t)(A)) /* Callbacks */ static herr_t H5FD_mpiposix_term(void); @@ -198,49 +192,49 @@ static MPI_Comm H5FD_mpiposix_communicator(const H5FD_t *_file); /* MPIPOSIX-specific file access properties */ typedef struct H5FD_mpiposix_fapl_t { - hbool_t use_gpfs; /*use GPFS hints */ - MPI_Comm comm; /*communicator */ + hbool_t use_gpfs; /* use GPFS hints */ + MPI_Comm comm; /* communicator */ } H5FD_mpiposix_fapl_t; /* The MPIPOSIX file driver information */ static const H5FD_class_mpi_t H5FD_mpiposix_g = { { /* Start of superclass information */ - "mpiposix", /*name */ - MAXADDR, /*maxaddr */ - H5F_CLOSE_SEMI, /* fc_degree */ - H5FD_mpiposix_term, /*terminate */ - NULL, /*sb_size */ - NULL, /*sb_encode */ - NULL, /*sb_decode */ - sizeof(H5FD_mpiposix_fapl_t), /*fapl_size */ - H5FD_mpiposix_fapl_get, /*fapl_get */ - H5FD_mpiposix_fapl_copy, /*fapl_copy */ - H5FD_mpiposix_fapl_free, /*fapl_free */ - 0, /*dxpl_size */ - NULL, /*dxpl_copy */ - NULL, /*dxpl_free */ - H5FD_mpiposix_open, /*open */ - H5FD_mpiposix_close, /*close */ - H5FD_mpiposix_cmp, /*cmp */ - H5FD_mpiposix_query, /*query */ - NULL, /*get_type_map */ - NULL, /*alloc */ - NULL, /*free */ - H5FD_mpiposix_get_eoa, /*get_eoa */ - H5FD_mpiposix_set_eoa, /*set_eoa */ - H5FD_mpiposix_get_eof, /*get_eof */ - H5FD_mpiposix_get_handle, /*get_handle */ - H5FD_mpiposix_read, /*read */ - H5FD_mpiposix_write, /*write */ - NULL, /*flush */ - H5FD_mpiposix_truncate, /*truncate */ - NULL, /*lock */ - NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + "mpiposix", /* name */ + MAXADDR, /* maxaddr */ + H5F_CLOSE_SEMI, /* fc_degree */ + H5FD_mpiposix_term, /* terminate */ + NULL, /* sb_size */ + NULL, /* sb_encode */ + NULL, /* sb_decode */ + sizeof(H5FD_mpiposix_fapl_t), /* fapl_size */ + H5FD_mpiposix_fapl_get, /* fapl_get */ + H5FD_mpiposix_fapl_copy, /* fapl_copy */ + H5FD_mpiposix_fapl_free, /* fapl_free */ + 0, /* dxpl_size */ + NULL, /* dxpl_copy */ + NULL, /* dxpl_free */ + H5FD_mpiposix_open, /* open */ + H5FD_mpiposix_close, /* close */ + H5FD_mpiposix_cmp, /* cmp */ + H5FD_mpiposix_query, /* query */ + NULL, /* get_type_map */ + NULL, /* alloc */ + NULL, /* free */ + H5FD_mpiposix_get_eoa, /* get_eoa */ + H5FD_mpiposix_set_eoa, /* set_eoa */ + H5FD_mpiposix_get_eof, /* get_eof */ + H5FD_mpiposix_get_handle, /* get_handle */ + H5FD_mpiposix_read, /* read */ + H5FD_mpiposix_write, /* write */ + NULL, /* flush */ + H5FD_mpiposix_truncate, /* truncate */ + NULL, /* lock */ + NULL, /* unlock */ + H5FD_FLMAP_SINGLE /* fl_map */ }, /* End of superclass information */ - H5FD_mpiposix_mpi_rank, /*get_rank */ - H5FD_mpiposix_mpi_size, /*get_size */ - H5FD_mpiposix_communicator /*get_comm */ + H5FD_mpiposix_mpi_rank, /* get_rank */ + H5FD_mpiposix_mpi_size, /* get_size */ + H5FD_mpiposix_communicator /* get_comm */ }; @@ -267,34 +261,31 @@ H5FD_mpiposix_init_interface(void) /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_init - * - * Purpose: Initialize this driver by registering the driver with the - * library. + * Function: H5FD_mpiposix_init * - * Return: Success: The driver ID for the mpiposix driver. + * Purpose: Initialize this driver by registering the driver with the + * library. * - * Failure: Negative. + * Return: Success: The driver ID for the mpiposix driver. + * Failure: Negative. * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ hid_t H5FD_mpiposix_init(void) { - hid_t ret_value=H5FD_MPIPOSIX_g; /* Return value */ + hid_t ret_value = H5FD_MPIPOSIX_g; /* Return value */ FUNC_ENTER_NOAPI(FAIL) - if (H5I_VFL!=H5Iget_type(H5FD_MPIPOSIX_g)) + if (H5I_VFL != H5Iget_type(H5FD_MPIPOSIX_g)) H5FD_MPIPOSIX_g = H5FD_register((const H5FD_class_t *)&H5FD_mpiposix_g,sizeof(H5FD_class_mpi_t),FALSE); /* Set return value */ - ret_value=H5FD_MPIPOSIX_g; + ret_value = H5FD_MPIPOSIX_g; done: FUNC_LEAVE_NOAPI(ret_value) @@ -302,11 +293,11 @@ done: /*--------------------------------------------------------------------------- - * Function: H5FD_mpiposix_term + * Function: H5FD_mpiposix_term * - * Purpose: Shut down the VFD + * Purpose: Shut down the VFD * - * Returns: Non-negative on success or negative on failure + * Returns: SUCCEED (can't fail) * * Programmer: Quincey Koziol * Friday, Jan 30, 2004 @@ -319,52 +310,41 @@ H5FD_mpiposix_term(void) FUNC_ENTER_NOAPI_NOINIT_NOERR /* Reset VFL ID */ - H5FD_MPIPOSIX_g=0; + H5FD_MPIPOSIX_g = 0; FUNC_LEAVE_NOAPI(SUCCEED) } /* end H5FD_mpiposix_term() */ /*------------------------------------------------------------------------- - * Function: H5Pset_fapl_mpiposix + * Function: H5Pset_fapl_mpiposix * - * Purpose: Store the user supplied MPI communicator COMM in - * the file access property list FAPL_ID which can then be used - * to create and/or open the file. This function is available - * only in the parallel HDF5 library and is not collective. + * Purpose: Store the user supplied MPI communicator COMM in + * the file access property list FAPL_ID which can then be used + * to create and/or open the file. This function is available + * only in the parallel HDF5 library and is not collective. * - * comm is the MPI communicator to be used for file open as - * defined in MPI_FILE_OPEN of MPI-2. This function makes a - * duplicate of comm. Any modification to comm after this function - * call returns has no effect on the access property list. + * comm is the MPI communicator to be used for file open as + * defined in MPI_FILE_OPEN of MPI-2. This function makes a + * duplicate of comm. Any modification to comm after this function + * call returns has no effect on the access property list. * * If fapl_id has previously set comm value, it will be replaced * and the old communicator is freed. * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol - * Thursday, July 11, 2002 - * - * Modifications: - * Albert Cheng, 2003-04-24 - * Modified the description of the function that it now stores - * a duplicate of the communicator. Free the old duplicate if - * previously set. (Work is actually done by H5P_set_driver.) - * - * Bill Wendling, 2003-05-01 - * Modified to take an extra flag indicating that we should - * use the GPFS hints (if available) for this file. + * Thursday, July 11, 2002 * *------------------------------------------------------------------------- */ herr_t H5Pset_fapl_mpiposix(hid_t fapl_id, MPI_Comm comm, hbool_t use_gpfs) { - H5FD_mpiposix_fapl_t fa; - H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value; + H5FD_mpiposix_fapl_t fa; + H5P_genplist_t *plist; /* Property list pointer */ + herr_t ret_value; FUNC_ENTER_API(FAIL) H5TRACE3("e", "iMcb", fapl_id, comm, use_gpfs); @@ -373,14 +353,14 @@ H5Pset_fapl_mpiposix(hid_t fapl_id, MPI_Comm comm, hbool_t use_gpfs) if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a file access list") if (MPI_COMM_NULL == comm) - HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a valid communicator") + HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a valid communicator") /* Initialize driver specific properties */ fa.comm = comm; fa.use_gpfs = use_gpfs; /* duplication is done during driver setting. */ - ret_value= H5P_set_driver(plist, H5FD_MPIPOSIX, &fa); + ret_value = H5P_set_driver(plist, H5FD_MPIPOSIX, &fa); done: FUNC_LEAVE_API(ret_value) @@ -388,57 +368,49 @@ done: /*------------------------------------------------------------------------- - * Function: H5Pget_fapl_mpiposix - * - * Purpose: If the file access property list is set to the H5FD_MPIPOSIX - * driver then this function returns a duplicate of the MPI - * communicator through the comm pointer. It is the responsibility - * of the application to free the returned communicator. - * - * Return: Success: Non-negative with the communicator and - * information returned through the COMM - * argument if non-null. Since it is a duplicate - * of the stored object, future modifications to - * the access property list do not affect it and - * it is the responsibility of the application to - * free it. - * - * Failure: Negative + * Function: H5Pget_fapl_mpiposix + * + * Purpose: If the file access property list is set to the H5FD_MPIPOSIX + * driver then this function returns a duplicate of the MPI + * communicator through the comm pointer. It is the responsibility + * of the application to free the returned communicator. + * + * Return: Success: Non-negative with the communicator and + * information returned through the COMM + * argument if non-null. Since it is a duplicate + * of the stored object, future modifications to + * the access property list do not affect it and + * it is the responsibility of the application to + * free it. + * Failure: Negative * * Programmer: Quincey Koziol - * Thursday, July 11, 2002 - * - * Modifications: - * Albert Cheng, 2003-04-24 - * Return duplicate of the stored communicator. - * - * Bill Wendling, 2003-05-01 - * Return the USE_GPFS flag. + * Thursday, July 11, 2002 * *------------------------------------------------------------------------- */ herr_t H5Pget_fapl_mpiposix(hid_t fapl_id, MPI_Comm *comm/*out*/, hbool_t *use_gpfs/*out*/) { - H5FD_mpiposix_fapl_t *fa; - H5P_genplist_t *plist; /* Property list pointer */ - int mpi_code; /* mpi return code */ - herr_t ret_value=SUCCEED; /* Return value */ + H5FD_mpiposix_fapl_t *fa; + H5P_genplist_t *plist; /* Property list pointer */ + int mpi_code; /* mpi return code */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE3("e", "ixx", fapl_id, comm, use_gpfs); if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a file access list") - if (H5FD_MPIPOSIX!=H5P_get_driver(plist)) + if (H5FD_MPIPOSIX != H5P_get_driver(plist)) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "incorrect VFL driver") - if (NULL==(fa=H5P_get_driver_info(plist))) + if (NULL == (fa = H5P_get_driver_info(plist))) HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "bad VFL driver info") /* Get MPI Communicator */ if (comm){ - if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(fa->comm, comm))) - HMPI_GOTO_ERROR(FAIL, "MPI_Comm_dup failed", mpi_code) + if (MPI_SUCCESS != (mpi_code = MPI_Comm_dup(fa->comm, comm))) + HMPI_GOTO_ERROR(FAIL, "MPI_Comm_dup failed", mpi_code) } if (use_gpfs) @@ -450,45 +422,39 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_fapl_get - * - * Purpose: Returns a file access property list which could be used to - * create another file the same as this one. + * Function: H5FD_mpiposix_fapl_get * - * Return: Success: Ptr to new file access property list with all - * fields copied from the file pointer. + * Purpose: Returns a file access property list which could be used to + * create another file the same as this one. * - * Failure: NULL + * Return: Success: Ptr to new file access property list with all + * fields copied from the file pointer. + * Failure: NULL * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * Albert Cheng, 2003-04-24 - * Duplicate the communicator object so that the new - * property list is insulated from the old one. - * *------------------------------------------------------------------------- */ static void * H5FD_mpiposix_fapl_get(H5FD_t *_file) { - H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; - H5FD_mpiposix_fapl_t *fa = NULL; - int mpi_code; /* MPI return code */ - void *ret_value; /* Return value */ + H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; + H5FD_mpiposix_fapl_t *fa = NULL; + int mpi_code; /* MPI return code */ + void *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); - if (NULL==(fa=H5MM_calloc(sizeof(H5FD_mpiposix_fapl_t)))) + if (NULL == (fa = H5MM_calloc(sizeof(H5FD_mpiposix_fapl_t)))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Duplicate the communicator. */ if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(file->comm, &fa->comm))) - HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) + HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) fa->use_gpfs = file->use_gpfs; @@ -501,19 +467,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_fapl_copy + * Function: H5FD_mpiposix_fapl_copy * - * Purpose: Copies the mpiposix-specific file access properties. + * Purpose: Copies the mpiposix-specific file access properties. * - * Return: Success: Ptr to a new property list - * - * Failure: NULL + * Return: Success: Ptr to a new property list + * Failure: NULL * * Programmer: Albert Cheng * Apr 24, 2003 * - * Modifications: - * *------------------------------------------------------------------------- */ static void * @@ -526,24 +489,24 @@ H5FD_mpiposix_fapl_copy(const void *_old_fa) FUNC_ENTER_NOAPI_NOINIT - if (NULL==(new_fa=H5MM_malloc(sizeof(H5FD_mpiposix_fapl_t)))) + if (NULL == (new_fa = H5MM_malloc(sizeof(H5FD_mpiposix_fapl_t)))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") /* Copy the general information */ HDmemcpy(new_fa, old_fa, sizeof(H5FD_mpiposix_fapl_t)); /* Duplicate communicator. */ - if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(old_fa->comm, &new_fa->comm))) - HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) + if (MPI_SUCCESS != (mpi_code = MPI_Comm_dup(old_fa->comm, &new_fa->comm))) + HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) new_fa->use_gpfs = old_fa->use_gpfs; ret_value = new_fa; done: if (NULL == ret_value){ - /* cleanup */ - if (new_fa) - H5MM_xfree(new_fa); + /* cleanup */ + if (new_fa) + H5MM_xfree(new_fa); } FUNC_LEAVE_NOAPI(ret_value) @@ -551,19 +514,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_fapl_free + * Function: H5FD_mpiposix_fapl_free * - * Purpose: Frees the mpiposix-specific file access properties. + * Purpose: Frees the mpiposix-specific file access properties. * - * Return: Success: 0 - * - * Failure: -1 + * Return: SUCCEED (can't fail) * * Programmer: Albert Cheng * Apr 24, 2003 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -573,10 +532,10 @@ H5FD_mpiposix_fapl_free(void *_fa) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(fa); + HDassert(fa); /* Free the internal communicator */ - assert(MPI_COMM_NULL!=fa->comm); + HDassert(MPI_COMM_NULL != fa->comm); MPI_Comm_free(&fa->comm); H5MM_xfree(fa); @@ -588,53 +547,46 @@ H5FD_mpiposix_fapl_free(void *_fa) * Function: H5FD_mpiposix_open * * Purpose: Opens a file with name NAME. The FLAGS are a bit field with - * purpose similar to the second argument of open(2) and which - * are defined in H5Fpublic.h. The file access property list - * FAPL_ID contains the properties driver properties and MAXADDR - * is the largest address which this file will be expected to - * access. This is collective. + * purpose similar to the second argument of open(2) and which + * are defined in H5Fpublic.h. The file access property list + * FAPL_ID contains the properties driver properties and MAXADDR + * is the largest address which this file will be expected to + * access. This is collective. * - * Return: Success: A new file pointer. - * Failure: NULL + * Return: Success: A new file pointer. + * Failure: NULL * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * Albert Cheng, 2003-04-24 - * Duplicate the communicator so that file is insulated from the - * old one. - * *------------------------------------------------------------------------- */ static H5FD_t * H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) { - H5FD_mpiposix_t *file=NULL; /* New MPIPOSIX file struct */ - int o_flags; /* Flags for file open call */ - int fd=(-1); /* File handle for file opened */ - int mpi_rank; /* MPI rank of this process */ - int mpi_size; /* Total number of MPI processes */ - int mpi_code; /* mpi return code */ - const H5FD_mpiposix_fapl_t *fa=NULL; /* MPIPOSIX file access property list information */ - H5FD_mpiposix_fapl_t _fa; /* Private copy of default file access property list information */ - H5P_genplist_t *plist; /* Property list pointer */ - h5_stat_t sb; /* Portable 'stat' struct */ + H5FD_mpiposix_t *file = NULL; /* New MPIPOSIX file struct */ + int o_flags; /* Flags for file open call */ + int fd = -1; /* File handle for file opened */ + int mpi_rank; /* MPI rank of this process */ + int mpi_size; /* Total number of MPI processes */ + int mpi_code; /* mpi return code */ + const H5FD_mpiposix_fapl_t *fa = NULL; /* MPIPOSIX file access property list information */ + H5FD_mpiposix_fapl_t _fa; /* Private copy of default file access property list information */ + H5P_genplist_t *plist; /* Property list pointer */ + h5_stat_t sb; /* Portable 'stat' struct */ #ifdef H5_HAVE_WIN32_API - HFILE filehandle; struct _BY_HANDLE_FILE_INFORMATION fileinfo; - int results; #endif - H5FD_t *ret_value=NULL; /* Return value */ - MPI_Comm comm_dup=MPI_COMM_NULL; + H5FD_t *ret_value = NULL; /* Return value */ + MPI_Comm comm_dup = MPI_COMM_NULL; FUNC_ENTER_NOAPI_NOINIT /* Check arguments */ if (!name || !*name) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid file name") - if (0==maxaddr || HADDR_UNDEF==maxaddr) + if (0 == maxaddr || HADDR_UNDEF == maxaddr) HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "bogus maxaddr") if (ADDR_OVERFLOW(maxaddr)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, NULL, "bogus maxaddr") @@ -642,31 +594,31 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, /* Obtain a pointer to mpiposix-specific file access properties */ if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") - if (H5P_FILE_ACCESS_DEFAULT==fapl_id || H5FD_MPIPOSIX!=H5P_get_driver(plist)) { - _fa.comm = MPI_COMM_SELF; /*default*/ + if (H5P_FILE_ACCESS_DEFAULT == fapl_id || H5FD_MPIPOSIX != H5P_get_driver(plist)) { + _fa.comm = MPI_COMM_SELF; /*default*/ _fa.use_gpfs = FALSE; - fa = &_fa; + fa = &_fa; } /* end if */ else { - fa = H5P_get_driver_info(plist); - assert(fa); + fa = H5P_get_driver_info(plist); + HDassert(fa); } /* end else */ /* Duplicate the communicator for use by this file. */ - if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(fa->comm, &comm_dup))) - HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) + if (MPI_SUCCESS != (mpi_code = MPI_Comm_dup(fa->comm, &comm_dup))) + HMPI_GOTO_ERROR(NULL, "MPI_Comm_dup failed", mpi_code) /* Get the MPI rank of this process and the total number of processes */ - if (MPI_SUCCESS != (mpi_code=MPI_Comm_rank (comm_dup, &mpi_rank))) + if (MPI_SUCCESS != (mpi_code = MPI_Comm_rank (comm_dup, &mpi_rank))) HMPI_GOTO_ERROR(NULL, "MPI_Comm_rank failed", mpi_code) - if (MPI_SUCCESS != (mpi_code=MPI_Comm_size (comm_dup, &mpi_size))) + if (MPI_SUCCESS != (mpi_code = MPI_Comm_size (comm_dup, &mpi_size))) HMPI_GOTO_ERROR(NULL, "MPI_Comm_size failed", mpi_code) /* Build the open flags */ o_flags = (H5F_ACC_RDWR & flags) ? O_RDWR : O_RDONLY; /* Only set the creation flag(s) for process 0 */ - if(mpi_rank==0) { + if(0 == mpi_rank) { if (H5F_ACC_TRUNC & flags) o_flags |= O_TRUNC; if (H5F_ACC_CREAT & flags) @@ -680,13 +632,14 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, * open (never create) the file and all processes proceed. */ /* Process 0 opens (or creates) file and broadcasts result to other processes */ - if(mpi_rank==0) { + if(0 == mpi_rank) { /* Open the file */ - fd=HDopen(name, o_flags, 0666); + fd = HDopen(name, o_flags, 0666); } /* end if */ - /* Broadcast the results of the open() from process 0 */ - /* This is necessary because of the "tentative open" code in H5F_open() + /* Broadcast the results of the open() from process 0 + * + * This is necessary because of the "tentative open" code in H5F_open() * where the file is attempted to be opened with different flags from the * user's, in order to check for the file's existence, etc. Here, process 0 * gets different flags from the other processes (since it is in charge of @@ -698,34 +651,36 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, HMPI_GOTO_ERROR(NULL, "MPI_Bcast failed", mpi_code) /* If the file open on process 0 failed, bail out on all processes now */ - if(fd<0) + if(fd < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") /* Other processes (non 0) wait for broadcast result from process 0 and then open file */ - if(mpi_rank!=0) { + if(mpi_rank != 0) { /* Open the file */ - if ((fd=HDopen(name, o_flags, 0666))<0) + if ((fd = HDopen(name, o_flags, 0666)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open file") } /* end if */ /* Process 0 fstat()s the file and broadcasts the results to the other processes */ - if(mpi_rank==0) { + if(0 == mpi_rank) { /* Get the stat information */ - if (HDfstat(fd, &sb)<0) + if (HDfstat(fd, &sb) < 0) HGOTO_ERROR(H5E_FILE, H5E_BADFILE, NULL, "unable to fstat file") } /* end if */ /* Broadcast the results of the fstat() from process 0 */ - if (MPI_SUCCESS != (mpi_code= MPI_Bcast(&sb, sizeof(h5_stat_t), MPI_BYTE, 0, comm_dup))) + if (MPI_SUCCESS != (mpi_code = MPI_Bcast(&sb, sizeof(h5_stat_t), MPI_BYTE, 0, comm_dup))) HMPI_GOTO_ERROR(NULL, "MPI_Bcast failed", mpi_code) #ifdef H5_HAVE_GPFS if (fa->use_gpfs) { /* - * Free all byte range tokens. This is a good thing to do if raw data is aligned on 256kB boundaries (a GPFS page is - * 256kB). Care should be taken that there aren't too many sub-page writes, or the mmfsd may become overwhelmed. This - * should probably eventually be passed down here as a property. The gpfs_fcntl() will most likely fail if `fd' isn't - * on a GPFS file system. */ + * Free all byte range tokens. This is a good thing to do if raw data + * is aligned on 256kB boundaries (a GPFS page is 256kB). Care should + * be taken that there aren't too many sub-page writes, or the mmfsd + * may become overwhelmed. This should probably eventually be passed + * down here as a property. The gpfs_fcntl() will most likely fail if + * 'fd' isn't on a GPFS file system. */ struct { gpfsFcntlHeader_t hdr; gpfsFreeRange_t fr; @@ -738,13 +693,13 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, hint.fr.start = 0; hint.fr.length = 0; - if (gpfs_fcntl(fd, &hint)<0) + if (gpfs_fcntl(fd, &hint) < 0) HGOTO_ERROR(H5E_FILE, H5E_FCNTL, NULL, "failed to send hints to GPFS") } #endif /* H5_HAVE_GPFS */ /* Build the file struct and initialize it */ - if (NULL==(file=H5MM_calloc(sizeof(H5FD_mpiposix_t)))) + if (NULL == (file=H5MM_calloc(sizeof(H5FD_mpiposix_t)))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") #ifdef REPORT_IO @@ -755,8 +710,9 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, file->fd = fd; file->eof = sb.st_size; - /* for H5_HAVE_WIN32_API support. H5_HAVE_WIN32_API 'stat' does not have st_blksize and st_blksize - is only used for the H5_HAVE_GPFS case */ + /* for H5_HAVE_WIN32_API support. H5_HAVE_WIN32_API 'stat' does not have + * st_blksize and st_blksize is only used for the H5_HAVE_GPFS case. + */ #ifdef H5_HAVE_GPFS file->blksize = sb.st_blksize; #endif @@ -775,26 +731,38 @@ H5FD_mpiposix_open(const char *name, unsigned flags, hid_t fapl_id, /* Set the information for the file's device and inode */ #ifdef H5_HAVE_WIN32_API - filehandle = _get_osfhandle(fd); - results = GetFileInformationByHandle((HANDLE)filehandle, &fileinfo); - file->fileindexhi = fileinfo.nFileIndexHigh; - file->fileindexlo = fileinfo.nFileIndexLow; -#else + file->hFile = (HANDLE)_get_osfhandle(fd); + if(INVALID_HANDLE_VALUE == file->hFile) + HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to get Windows file handle") + + if(!GetFileInformationByHandle((HANDLE)file->hFile, &fileinfo)) + HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to get Windows file information") + + file->nFileIndexHigh = fileinfo.nFileIndexHigh; + file->nFileIndexLow = fileinfo.nFileIndexLow; + file->dwVolumeSerialNumber = fileinfo.dwVolumeSerialNumber; +#else /* H5_HAVE_WIN32_API */ file->device = sb.st_dev; +#ifdef H5_VMS + file->inode[0] = sb.st_ino[0]; + file->inode[1] = sb.st_ino[1]; + file->inode[2] = sb.st_ino[2]; +#else /* H5_VMS */ file->inode = sb.st_ino; -#endif +#endif /* H5_VMS */ +#endif /* H5_HAVE_WIN32_API */ /* Indicate success */ - ret_value=(H5FD_t *)file; + ret_value = (H5FD_t *)file; done: /* Error cleanup */ - if(ret_value==NULL) { + if(NULL == ret_value) { /* Close the file if it was left open */ - if(fd!=(-1)) + if(fd != -1) HDclose(fd); - if (MPI_COMM_NULL != comm_dup) - MPI_Comm_free(&comm_dup); + if (MPI_COMM_NULL != comm_dup) + MPI_Comm_free(&comm_dup); } /* end if */ FUNC_LEAVE_NOAPI(ret_value) @@ -806,30 +774,26 @@ done: * * Purpose: Closes a file. * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * Albert Cheng, 2003-04-24 - * Free the communicator stored. *------------------------------------------------------------------------- */ static herr_t H5FD_mpiposix_close(H5FD_t *_file) { - H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; - herr_t ret_value=SUCCEED; /* Return value */ + H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); /* Close the unix file */ - if (HDclose(file->fd)<0) + if(HDclose(file->fd) < 0) HGOTO_ERROR(H5E_IO, H5E_CANTCLOSEFILE, FAIL, "unable to close file") /* make sure all processes have closed the file before returning. */ @@ -844,20 +808,17 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_cmp + * Function: H5FD_mpiposix_cmp * - * Purpose: Compares two files belonging to this driver using an - * arbitrary (but consistent) ordering. + * Purpose: Compares two files belonging to this driver using an + * arbitrary (but consistent) ordering. * - * Return: Success: A value like strcmp() - * Failure: never fails (arguments were checked by the - * caller). + * Return: Success: A value like strcmp() + * Failure: never fails (arguments were checked by the caller). * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static int @@ -865,33 +826,39 @@ H5FD_mpiposix_cmp(const H5FD_t *_f1, const H5FD_t *_f2) { const H5FD_mpiposix_t *f1 = (const H5FD_mpiposix_t*)_f1; const H5FD_mpiposix_t *f2 = (const H5FD_mpiposix_t*)_f2; - int ret_value=0; + int ret_value = 0; FUNC_ENTER_NOAPI_NOINIT_NOERR #ifdef H5_HAVE_WIN32_API - if (f1->fileindexhi < f2->fileindexhi) HGOTO_DONE(-1) - if (f1->fileindexhi > f2->fileindexhi) HGOTO_DONE(1) + if(f1->dwVolumeSerialNumber < f2->dwVolumeSerialNumber) HGOTO_DONE(-1) + if(f1->dwVolumeSerialNumber > f2->dwVolumeSerialNumber) HGOTO_DONE(1) - if (f1->fileindexlo < f2->fileindexlo) HGOTO_DONE(-1) - if (f1->fileindexlo > f2->fileindexlo) HGOTO_DONE(1) + if(f1->nFileIndexHigh < f2->nFileIndexHigh) HGOTO_DONE(-1) + if(f1->nFileIndexHigh > f2->nFileIndexHigh) HGOTO_DONE(1) -#else + if(f1->nFileIndexLow < f2->nFileIndexLow) HGOTO_DONE(-1) + if(f1->nFileIndexLow > f2->nFileIndexLow) HGOTO_DONE(1) +#else /* H5_HAVE_WIN32_API */ #ifdef H5_DEV_T_IS_SCALAR - if (f1->device < f2->device) HGOTO_DONE(-1) - if (f1->device > f2->device) HGOTO_DONE(1) + if(f1->device < f2->device) HGOTO_DONE(-1) + if(f1->device > f2->device) HGOTO_DONE(1) #else /* H5_DEV_T_IS_SCALAR */ /* If dev_t isn't a scalar value on this system, just use memcmp to * determine if the values are the same or not. The actual return value * shouldn't really matter... */ - if(HDmemcmp(&(f1->device),&(f2->device),sizeof(dev_t))<0) HGOTO_DONE(-1) - if(HDmemcmp(&(f1->device),&(f2->device),sizeof(dev_t))>0) HGOTO_DONE(1) + if(HDmemcmp(&(f1->device),&(f2->device),sizeof(dev_t)) < 0) HGOTO_DONE(-1) + if(HDmemcmp(&(f1->device),&(f2->device),sizeof(dev_t)) > 0) HGOTO_DONE(1) #endif /* H5_DEV_T_IS_SCALAR */ - - if (f1->inode < f2->inode) HGOTO_DONE(-1) - if (f1->inode > f2->inode) HGOTO_DONE(1) -#endif +#ifdef H5_VMS + if(HDmemcmp(&(f1->inode), &(f2->inode), 3 * sizeof(ino_t)) < 0) HGOTO_DONE(-1) + if(HDmemcmp(&(f1->inode), &(f2->inode), 3 * sizeof(ino_t)) > 0) HGOTO_DONE(1) +#else /* H5_VMS */ + if(f1->inode < f2->inode) HGOTO_DONE(-1) + if(f1->inode > f2->inode) HGOTO_DONE(1) +#endif /* H5_VMS */ +#endif /* H5_HAVE_WIN32_API */ done: FUNC_LEAVE_NOAPI(ret_value) @@ -899,25 +866,16 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_query + * Function: H5FD_mpiposix_query * - * Purpose: Set the flags that this VFL driver is capable of supporting. + * Purpose: Set the flags that this VFL driver is capable of supporting. * (listed in H5FDpublic.h) * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED (can't fail) * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * - * John Mainzer -- 9/21/05 - * Modified code to turn off the - * H5FD_FEAT_ACCUMULATE_METADATA_WRITE flag. - * With the movement of all cache writes to process 0, - * this flag has become problematic in PHDF5. - * *------------------------------------------------------------------------- */ static herr_t @@ -928,10 +886,10 @@ H5FD_mpiposix_query(const H5FD_t UNUSED *_file, unsigned long *flags /* out */) /* Set the VFL feature flags that this driver supports */ if(flags) { *flags=0; - *flags|=H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */ - *flags|=H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */ - *flags|=H5FD_FEAT_HAS_MPI; /* This driver uses MPI */ - *flags|=H5FD_FEAT_ALLOCATE_EARLY; /* Allocate space early instead of late */ + *flags |= H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */ + *flags |= H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */ + *flags |= H5FD_FEAT_HAS_MPI; /* This driver uses MPI */ + *flags |= H5FD_FEAT_ALLOCATE_EARLY; /* Allocate space early instead of late */ } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) @@ -939,23 +897,18 @@ H5FD_mpiposix_query(const H5FD_t UNUSED *_file, unsigned long *flags /* out */) /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_get_eoa + * Function: H5FD_mpiposix_get_eoa * - * Purpose: Gets the end-of-address marker for the file. The EOA marker - * is the first address past the last byte allocated in the - * format address space. + * Purpose: Gets the end-of-address marker for the file. The EOA marker + * is the first address past the last byte allocated in the + * format address space. * - * Return: Success: The end-of-address marker. - * Failure: HADDR_UNDEF + * Return: Success: The end-of-address marker. + * Failure: HADDR_UNDEF * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * Raymond Lu - * 21 Dec. 2006 - * Added the parameter TYPE. It's only used for MULTI driver. - * *------------------------------------------------------------------------- */ static haddr_t @@ -965,31 +918,25 @@ H5FD_mpiposix_get_eoa(const H5FD_t *_file, H5FD_mem_t UNUSED type) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); FUNC_LEAVE_NOAPI(file->eoa) } /* end H5FD_mpiposix_get_eoa() */ /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_set_eoa + * Function: H5FD_mpiposix_set_eoa * - * Purpose: Set the end-of-address marker for the file. This function is - * called shortly after an existing HDF5 file is opened in order - * to tell the driver where the end of the HDF5 data is located. + * Purpose: Set the end-of-address marker for the file. This function is + * called shortly after an existing HDF5 file is opened in order + * to tell the driver where the end of the HDF5 data is located. * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED (can't fail) * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * Raymond Lu - * 21 Dec. 2006 - * Added the parameter TYPE. It's only used for MULTI driver. - * *------------------------------------------------------------------------- */ static herr_t @@ -999,8 +946,8 @@ H5FD_mpiposix_set_eoa(H5FD_t *_file, H5FD_mem_t UNUSED type, haddr_t addr) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); file->eoa = addr; @@ -1009,25 +956,23 @@ H5FD_mpiposix_set_eoa(H5FD_t *_file, H5FD_mem_t UNUSED type, haddr_t addr) /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_get_eof + * Function: H5FD_mpiposix_get_eof * - * Purpose: Gets the end-of-file marker for the file. The EOF marker - * is the real size of the file. + * Purpose: Gets the end-of-file marker for the file. The EOF marker + * is the real size of the file. * - * The MPIPOSIX driver doesn't bother keeping this field updated - * since that's a relatively expensive operation. Fortunately - * the library only needs the EOF just after the file is opened - * in order to determine whether the file is empty, truncated, - * or okay. + * The MPIPOSIX driver doesn't bother keeping this field updated + * since that's a relatively expensive operation. Fortunately + * the library only needs the EOF just after the file is opened + * in order to determine whether the file is empty, truncated, + * or okay. * - * Return: Success: The end-of-address marker. - * Failure: HADDR_UNDEF + * Return: Success: The end-of-address marker. + * Failure: HADDR_UNDEF * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static haddr_t @@ -1037,10 +982,10 @@ H5FD_mpiposix_get_eof(const H5FD_t *_file) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); - FUNC_LEAVE_NOAPI(MAX(file->eof,file->eoa)) + FUNC_LEAVE_NOAPI(MAX(file->eof, file->eoa)) } /* end H5FD_mpiposix_get_eof() */ @@ -1049,13 +994,11 @@ H5FD_mpiposix_get_eof(const H5FD_t *_file) * * Purpose: Returns the file handle of MPI-POSIX file driver. * - * Returns: Non-negative if succeed or negative if fails. + * Returns: SUCCEED/FAIL * * Programmer: Raymond Lu * Sept. 16, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t @@ -1077,43 +1020,41 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_read + * Function: H5FD_mpiposix_read * - * Purpose: Reads SIZE bytes of data from FILE beginning at address ADDR - * into buffer BUF according to data transfer properties in - * DXPL_ID using potentially complex file and buffer types to - * effect the transfer. + * Purpose: Reads SIZE bytes of data from FILE beginning at address ADDR + * into buffer BUF according to data transfer properties in + * DXPL_ID using potentially complex file and buffer types to + * effect the transfer. * - * Reading past the end of the file returns zeros instead of - * failing. + * Reading past the end of the file returns zeros instead of + * failing. * - * Return: Success: Non-negative. Result is stored in caller-supplied - * buffer BUF. - * Failure: Negative, Contents of buffer BUF are undefined. + * Return: Success: Non-negative. Result is stored in caller-supplied + * buffer BUF. + * Failure: Negative, Contents of buffer BUF are undefined. * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t -H5FD_mpiposix_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t UNUSED dxpl_id, haddr_t addr, size_t size, - void *buf/*out*/) +H5FD_mpiposix_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t UNUSED dxpl_id, + haddr_t addr, size_t size, void *buf/*out*/) { - H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; - ssize_t nbytes; /* Number of bytes read each I/O call */ - herr_t ret_value=SUCCEED; + H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; + ssize_t nbytes; /* Number of bytes read each I/O call */ + herr_t ret_value = SUCCEED; FUNC_ENTER_NOAPI_NOINIT - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); - assert(buf); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); + HDassert(buf); /* Check for overflow conditions */ - if (HADDR_UNDEF==addr) + if (HADDR_UNDEF == addr) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr undefined") if (REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow") @@ -1130,31 +1071,52 @@ H5FD_mpiposix_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t UNUSED dxpl_id, #endif /* Seek to the correct location */ - if ((addr!=file->pos || OP_READ!=file->op) && - file_seek(file->fd, (file_offset_t)addr, SEEK_SET)<0) - HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") + if(addr != file->pos || OP_READ != file->op) { + if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) + HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") + } /* end if */ - /* - * Read data, being careful of interrupted system calls, partial results, + /* Read data, being careful of interrupted system calls, partial results, * and the end of the file. */ - while (size>0) { + while(size > 0) { + + h5_mpiposix_io_t bytes_in = 0; /* # of bytes to read */ + h5_mpiposix_io_ret_t bytes_read = -1; /* # of bytes actually read */ + + /* Trying to read more bytes than the return type can handle is + * undefined behavior in POSIX. + */ + if(size > H5_MPIPOSIX_MAX_IO_BYTES_g) + bytes_in = H5_MPIPOSIX_MAX_IO_BYTES_g; + else + bytes_in = (h5_mpiposix_io_t)size; + do { - nbytes = HDread(file->fd, buf, size); - } while (-1==nbytes && EINTR==errno); - if (-1==nbytes) - HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed") - if (0==nbytes) { + bytes_read = HDread(file->fd, buf, bytes_in); + } while(-1 == bytes_read && EINTR == errno); + + if(-1 == bytes_read) { /* error */ + int myerrno = errno; + time_t mytime = HDtime(NULL); + HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed: time = %s, file descriptor = %d, errno = %d, error message = '%s', buf = %p, size = %lu, offset = %llu", HDctime(&mytime), file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long)size, (unsigned long long)myoffset); + } /* end if */ + + if(0 == bytes_read) { /* end of file but not end of format address space */ HDmemset(buf, 0, size); break; } /* end if */ - assert(nbytes>=0); - assert((size_t)nbytes<=size); - size -= nbytes; - addr += (haddr_t)nbytes; - buf = (char*)buf + nbytes; - } + + HDassert(bytes_read >= 0); + HDassert((size_t)bytes_read <= size); + + size -= (size_t)bytes_read; + addr += (haddr_t)bytes_read; + buf = (char *)buf + bytes_read; + } /* end while */ /* Update current position */ file->pos = addr; @@ -1162,7 +1124,7 @@ H5FD_mpiposix_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t UNUSED dxpl_id, done: /* Check for error */ - if(ret_value<0) { + if(ret_value < 0) { /* Reset last file I/O information */ file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; @@ -1173,55 +1135,46 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_write + * Function: H5FD_mpiposix_write * - * Purpose: Writes SIZE bytes of data to FILE beginning at address ADDR - * from buffer BUF according to data transfer properties in - * DXPL_ID using potentially complex file and buffer types to - * effect the transfer. + * Purpose: Writes SIZE bytes of data to FILE beginning at address ADDR + * from buffer BUF according to data transfer properties in + * DXPL_ID using potentially complex file and buffer types to + * effect the transfer. * - * Return: Success: non-negative - * Failure: negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * - * Quincey Koziol - 2002/07/18 - * Added "block_before_meta_write" dataset transfer flag, which - * is set during writes from a metadata cache flush and indicates - * that all the processes must sync up before (one of them) - * writing metadata. - * *------------------------------------------------------------------------- */ static herr_t H5FD_mpiposix_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf) { - H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; + H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; #if 0 /* JRM */ int mpi_code; /* MPI return code */ #endif /* JRM */ - ssize_t nbytes; /* Number of bytes written each I/O call */ - H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* Return value */ + ssize_t nbytes; /* Number of bytes written each I/O call */ + H5P_genplist_t *plist; /* Property list pointer */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); - assert(H5I_GENPROP_LST==H5I_get_type(dxpl_id)); - assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); - assert(buf); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); + HDassert(H5I_GENPROP_LST == H5I_get_type(dxpl_id)); + HDassert(TRUE == H5P_isa_class(dxpl_id,H5P_DATASET_XFER)); + HDassert(buf); /* Check for overflow conditions */ - if (HADDR_UNDEF==addr) + if (HADDR_UNDEF == addr) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr undefined") if (REGION_OVERFLOW(addr, size)) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow") - if (addr+size>file->eoa) + if ((addr + size) > file->eoa) HGOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow") /* Obtain the data transfer properties */ @@ -1237,26 +1190,26 @@ H5FD_mpiposix_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, * metadata. * -- JRM 9/1/05 */ - if(type!=H5FD_MEM_DRAW) { - unsigned block_before_meta_write=0; /* Whether to block before a metadata write */ - - /* Check if we need to syncronize all processes before attempting metadata write - * (Prevents race condition where the process writing the metadata goes ahead - * and writes the metadata to the file before all the processes have - * read the data, "transmitting" data from the "future" to the reading - * process. -QAK ) + if(type != H5FD_MEM_DRAW) { + unsigned block_before_meta_write = 0; /* Whether to block before a metadata write */ + + /* Check if we need to synchronize all processes before attempting + * metadata write (Prevents race condition where the process writing + * the metadata goes ahead and writes the metadata to the file before + * all the processes have read the data, "transmitting" data from the + * "future" to the reading process. -QAK ) * * The only time we don't want to block before a metadata write is when * we are flushing out a bunch of metadata. Then, we block before the * first write and don't block for further writes in the sequence. */ - if(H5P_exist_plist(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME)>0) - if(H5P_get(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME,&block_before_meta_write)<0) + if(H5P_exist_plist(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME) > 0) + if(H5P_get(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME,&block_before_meta_write) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get H5AC property") #if 0 /* JRM */ if(block_before_meta_write) - if (MPI_SUCCESS!= (mpi_code=MPI_Barrier(file->comm))) + if (MPI_SUCCESS != (mpi_code = MPI_Barrier(file->comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code) #endif /* JRM */ @@ -1273,11 +1226,11 @@ H5FD_mpiposix_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, MPI_Comm_rank(MPI_COMM_WORLD, &commrank); HDfprintf(stderr, "write: rank=%d file=0x%08lx type=%d, addr=%a size=%Zu %s\n", commrank, (unsigned long)file, (int)type, addr, size, - 0==file->naccess?"(FIRST ACCESS)":""); + 0 == file->naccess ? "(FIRST ACCESS)" : ""); } #endif - if (0==file->naccess++) { + if (0 == file->naccess++) { /* First write access to this file */ #ifdef H5_HAVE_GPFS if (file->use_gpfs) { @@ -1302,50 +1255,76 @@ H5FD_mpiposix_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, } /* Seek to the correct location */ - if ((addr!=file->pos || OP_WRITE!=file->op) && - file_seek(file->fd, (file_offset_t)addr, SEEK_SET)<0) - HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") + if(addr != file->pos || OP_WRITE != file->op) { + if(HDlseek(file->fd, (HDoff_t)addr, SEEK_SET) < 0) + HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") + } /* end if */ - /* - * Write the data, being careful of interrupted system calls and partial - * results + /* Write data, being careful of interrupted system calls, partial results, + * and the end of the file. */ - while (size>0) { + while(size > 0) { + + h5_mpiposix_io_t bytes_in = 0; /* # of bytes to write */ + h5_mpiposix_io_ret_t bytes_wrote = -1; /* # of bytes actually written */ + + /* Trying to write more bytes than the return type can handle is + * undefined behavior in POSIX. + */ + if(size > H5_MPIPOSIX_MAX_IO_BYTES_g) + bytes_in = H5_MPIPOSIX_MAX_IO_BYTES_g; + else + bytes_in = (h5_mpiposix_io_t)size; + do { - nbytes = HDwrite(file->fd, buf, size); - } while (-1==nbytes && EINTR==errno); - if (-1==nbytes) - HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed") - assert(nbytes>0); - assert((size_t)nbytes<=size); - size -= nbytes; - addr += (haddr_t)nbytes; - buf = (const char*)buf + nbytes; + bytes_wrote = HDwrite(file->fd, buf, bytes_in); + } while(-1 == bytes_wrote && EINTR == errno); + + if(-1 == bytes_wrote) { /* error */ + int myerrno = errno; + time_t mytime = HDtime(NULL); + HDoff_t myoffset = HDlseek(file->fd, (HDoff_t)0, SEEK_CUR); + + HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file write failed: time = %s, file descriptor = %d, errno = %d, error message = '%s', buf = %p, size = %lu, offset = %llu", HDctime(&mytime), file->fd, myerrno, HDstrerror(myerrno), buf, (unsigned long)size, (unsigned long long)myoffset); + } /* end if */ + + if(0 == bytes_wrote) { + /* end of file but not end of format address space */ + HDmemset(buf, 0, size); + break; + } /* end if */ + + HDassert(bytes_wrote >= 0); + HDassert((size_t)bytes_wrote <= size); + + size -= (size_t)bytes_wrote; + addr += (haddr_t)bytes_wrote; + buf = (char *)buf + bytes_wrote; } /* end while */ - /* Update current last file I/O information */ + /* Update current position */ file->pos = addr; file->op = OP_WRITE; done: /* Check for error */ - if(ret_value<0) { + if(ret_value < 0) { /* Reset last file I/O information */ file->pos = HADDR_UNDEF; file->op = OP_UNKNOWN; } /* end if */ #if 0 /* JRM */ - /* Since metadata writes are now done by process 0 only, this broadcast - * is no longer needed. I leave it in and commented out to remind us - * that we need to re-work this function to reflect this reallity. - * - * -- JRM 9/1/05 - */ + /* Since metadata writes are now done by process 0 only, this broadcast + * is no longer needed. I leave it in and commented out to remind us + * that we need to re-work this function to reflect this reallity. + * + * -- JRM 9/1/05 + */ /* Guard against getting into metadata broadcast in failure cases */ else { /* when only one process writes, need to broadcast the ret_value to other processes */ - if (type!=H5FD_MEM_DRAW) { + if (type != H5FD_MEM_DRAW) { if (MPI_SUCCESS != (mpi_code= MPI_Bcast(&ret_value, sizeof(ret_value), MPI_BYTE, H5_PAR_META_WRITE, file->comm))) HMPI_GOTO_ERROR(FAIL, "MPI_Bcast failed", mpi_code) } /* end if */ @@ -1359,11 +1338,10 @@ done: /*------------------------------------------------------------------------- * Function: H5FD_mpiposix_truncate * - * Purpose: Makes sure that the true file size is the same (or larger) - * than the end-of-address. + * Purpose: Makes sure that the true file size is the same (or larger) + * than the end-of-address. * - * Return: Success: Non-negative - * Failure: Negative + * Return: SUCCEED/FAIL * * Programmer: Quincey Koziol * Thursday, July 11, 2002 @@ -1374,12 +1352,8 @@ static herr_t H5FD_mpiposix_truncate(H5FD_t *_file, hid_t UNUSED dxpl_id, hbool_t UNUSED closing) { H5FD_mpiposix_t *file = (H5FD_mpiposix_t*)_file; -#ifdef H5_HAVE_WIN32_API - HFILE filehandle; /* Windows file handle */ - LARGE_INTEGER li; /* 64-bit integer for SetFilePointer() call */ -#endif /* H5_HAVE_WIN32_API */ - int mpi_code; /* MPI return code */ - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; /* Return value */ + int mpi_code; /* MPI return code */ FUNC_ENTER_NOAPI_NOINIT @@ -1390,19 +1364,42 @@ H5FD_mpiposix_truncate(H5FD_t *_file, hid_t UNUSED dxpl_id, hbool_t UNUSED closi if(file->eoa > file->last_eoa) { /* Use the round-robin process to truncate (extend) the file */ if(file->mpi_rank == H5_PAR_META_WRITE) { + #ifdef H5_HAVE_WIN32_API - /* Map the posix file handle to a Windows file handle */ - filehandle = _get_osfhandle(file->fd); - - /* Translate 64-bit integers into form Windows wants */ - /* [This algorithm is from the Windows documentation for SetFilePointer()] */ - li.QuadPart = file->eoa; - SetFilePointer((HANDLE)filehandle, li.LowPart, &li.HighPart, FILE_BEGIN); - if(SetEndOfFile((HANDLE)filehandle) == 0) + LARGE_INTEGER li; /* 64-bit (union) integer for SetFilePointer() call */ + DWORD dwPtrLow; /* Low-order pointer bits from SetFilePointer() + * Only used as an error code here. + */ + DWORD dwError; /* DWORD error code from GetLastError() */ + BOOL bError; /* Boolean error flag */ + + /* Windows uses this odd QuadPart union for 32/64-bit portability */ + li.QuadPart = (__int64)file->eoa; + + /* Extend the file to make sure it's large enough. + * + * Since INVALID_SET_FILE_POINTER can technically be a valid return value + * from SetFilePointer(), we also need to check GetLastError(). + */ + dwPtrLow = SetFilePointer(file->hFile, li.LowPart, &li.HighPart, FILE_BEGIN); + if(INVALID_SET_FILE_POINTER == dwPtrLow) { + dwError = GetLastError(); + if(dwError != NO_ERROR ) + HGOTO_ERROR(H5E_FILE, H5E_FILEOPEN, FAIL, "unable to set file pointer") + } + + bError = SetEndOfFile(file->hFile); + if(0 == bError) HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") #else /* H5_HAVE_WIN32_API */ - if(-1==file_truncate(file->fd, (file_offset_t)file->eoa)) - HGOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") +#ifdef H5_VMS + /* Reset seek offset to the beginning of the file, so that the file isn't + * re-extended later. This may happen on Open VMS. */ + if(-1 == HDlseek(file->fd, (HDoff_t)0, SEEK_SET)) + HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to seek to proper position") +#endif /* H5_VMS */ + if(-1 == HDftruncate(file->fd, (HDoff_t)file->eoa)) + HSYS_GOTO_ERROR(H5E_IO, H5E_SEEKERROR, FAIL, "unable to extend file properly") #endif /* H5_HAVE_WIN32_API */ } /* end if */ @@ -1430,18 +1427,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_mpi_rank + * Function: H5FD_mpiposix_mpi_rank * - * Purpose: Returns the MPI rank for a process + * Purpose: Returns the MPI rank for a process * - * Return: Success: non-negative - * Failure: negative + * Return: MPI rank. Cannot report failure. * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static int @@ -1451,26 +1445,23 @@ H5FD_mpiposix_mpi_rank(const H5FD_t *_file) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); FUNC_LEAVE_NOAPI(file->mpi_rank) } /* end H5FD_mpiposix_mpi_rank() */ /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_mpi_size + * Function: H5FD_mpiposix_mpi_size * - * Purpose: Returns the number of MPI processes + * Purpose: Returns the number of MPI processes * - * Return: Success: non-negative - * Failure: negative + * Return: The number of MPI processes. Cannot report failure. * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static int @@ -1480,27 +1471,23 @@ H5FD_mpiposix_mpi_size(const H5FD_t *_file) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); FUNC_LEAVE_NOAPI(file->mpi_size) } /* end H5FD_mpiposix_mpi_size() */ /*------------------------------------------------------------------------- - * Function: H5FD_mpiposix_communicator - * - * Purpose: Returns the MPI communicator for the file. + * Function: H5FD_mpiposix_communicator * - * Return: Success: The communicator + * Purpose: Returns the MPI communicator for the file. * - * Failure: NULL + * Return: The MPI communicator. Cannot report failure. * * Programmer: Quincey Koziol * Thursday, July 11, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ static MPI_Comm @@ -1510,11 +1497,10 @@ H5FD_mpiposix_communicator(const H5FD_t *_file) FUNC_ENTER_NOAPI_NOINIT_NOERR - assert(file); - assert(H5FD_MPIPOSIX==file->pub.driver_id); + HDassert(file); + HDassert(H5FD_MPIPOSIX == file->pub.driver_id); FUNC_LEAVE_NOAPI(file->comm) } /* end H5FD_mpi_posix_communicator() */ #endif /*H5_HAVE_PARALLEL*/ - diff --git a/src/H5FDmpiposix.h b/src/H5FDmpiposix.h index af13fad..e3764e1 100644 --- a/src/H5FDmpiposix.h +++ b/src/H5FDmpiposix.h @@ -14,7 +14,7 @@ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* - * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> + * Programmer: Quincey Koziol <koziol@hdfgroup.org> * Thursday, July 11, 2002 * * Purpose: The public header file for the mpiposix driver. @@ -24,14 +24,14 @@ #define __H5FDmpiposix_H #ifdef H5_HAVE_PARALLEL -# define H5FD_MPIPOSIX (H5FD_mpiposix_init()) +# define H5FD_MPIPOSIX (H5FD_mpiposix_init()) #else -# define H5FD_MPIPOSIX (-1) +# define H5FD_MPIPOSIX (-1) #endif /* Macros */ -#define IS_H5FD_MPIPOSIX(f) /* (H5F_t *f) */ \ +#define IS_H5FD_MPIPOSIX(f) /* (H5F_t *f) */ \ (H5FD_MPIPOSIX==H5F_DRIVER_ID(f)) #ifdef H5_HAVE_PARALLEL @@ -52,4 +52,3 @@ H5_DLL herr_t H5Pget_fapl_mpiposix(hid_t fapl_id, MPI_Comm *comm/*out*/, hbool_t #endif /*H5_HAVE_PARALLEL*/ #endif /* __H5FDmpiposix_H */ - diff --git a/src/H5FDmulti.c b/src/H5FDmulti.c index b1d312f..16934e3 100644 --- a/src/H5FDmulti.c +++ b/src/H5FDmulti.c @@ -74,6 +74,10 @@ #define END_MEMBERS }} +#define H5FD_MULTI_DXPL_PROP_NAME "H5FD_MULTI_DXPL" +#define H5FD_MULTI_DXPL_PROP_SIZE sizeof(H5FD_multi_dxpl_t) + + /* The driver identification number, initialized at runtime */ static hid_t H5FD_MULTI_g = 0; @@ -126,8 +130,6 @@ static herr_t H5FD_multi_sb_decode(H5FD_t *file, const char *name, static void *H5FD_multi_fapl_get(H5FD_t *file); static void *H5FD_multi_fapl_copy(const void *_old_fa); static herr_t H5FD_multi_fapl_free(void *_fa); -static void *H5FD_multi_dxpl_copy(const void *_old_dx); -static herr_t H5FD_multi_dxpl_free(void *_dx); static H5FD_t *H5FD_multi_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); static herr_t H5FD_multi_close(H5FD_t *_file); @@ -161,9 +163,9 @@ static const H5FD_class_t H5FD_multi_g = { H5FD_multi_fapl_get, /*fapl_get */ H5FD_multi_fapl_copy, /*fapl_copy */ H5FD_multi_fapl_free, /*fapl_free */ - sizeof(H5FD_multi_dxpl_t), /*dxpl_size */ - H5FD_multi_dxpl_copy, /*dxpl_copy */ - H5FD_multi_dxpl_free, /*dxpl_free */ + 0, /*dxpl_size */ + NULL, /*dxpl_copy */ + NULL, /*dxpl_free */ H5FD_multi_open, /*open */ H5FD_multi_close, /*close */ H5FD_multi_cmp, /*cmp */ @@ -590,6 +592,127 @@ H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map/*out*/, /*------------------------------------------------------------------------- + * Function: H5FD_multi_dxpl_copy_cb + * + * Purpose: Multi VFD DXPL property 'copy' callback + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Quincey Koziol + * Wednesday, August 15, 2012 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5FD_multi_dxpl_copy_cb(const char *name, size_t size, void *_dx) +{ + H5FD_multi_dxpl_t *dx = (H5FD_multi_dxpl_t *)_dx; + static const char *func = "H5FD_multi_dxpl_copy_cb"; /* Function Name for error reporting */ + + /* Shut compiler up */ + name = name; + + /* Sanity check */ + assert(size == sizeof(H5FD_multi_dxpl_t)); + + ALL_MEMBERS(mt) { + if(dx->memb_dxpl[mt] >= 0) + if(H5Iinc_ref(dx->memb_dxpl[mt]) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTINC, "can't increment ref. count for multi VFD property", -1) + } END_MEMBERS; + + return 0; +} /* end H5FD_multi_dxpl_copy_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5FD_multi_dxpl_cmp_cb + * + * Purpose: Multi VFD DXPL property 'compare' callback + * + * Return: Success: same as memcmp() + * Failure: <can't fail> + * + * Programmer: Quincey Koziol + * Wednesday, August 15, 2012 + * + *------------------------------------------------------------------------- + */ +static int +H5FD_multi_dxpl_cmp_cb(const void *_dx1, const void *_dx2, size_t size) +{ + const H5FD_multi_dxpl_t *dx1 = (const H5FD_multi_dxpl_t *)_dx1; + const H5FD_multi_dxpl_t *dx2 = (const H5FD_multi_dxpl_t *)_dx2; + int cmp_status; + + /* Sanity check */ + assert(size == sizeof(H5FD_multi_dxpl_t)); + + ALL_MEMBERS(mt) { + if(dx1->memb_dxpl[mt] >= 0) { + if(dx2->memb_dxpl[mt] >= 0) { + cmp_status = H5Pequal(dx1->memb_dxpl[mt], dx2->memb_dxpl[mt]); + if(cmp_status != 0) + return(cmp_status); + } /* end if */ + else + return(-1); + } /* end if */ + else { + if(dx2->memb_dxpl[mt] >= 0) + return(1); + else + if(dx1->memb_dxpl[mt] > dx2->memb_dxpl[mt]) + return(-1); + else if(dx1->memb_dxpl[mt] < dx2->memb_dxpl[mt]) + return(1); + else + continue; + } /* end else */ + } END_MEMBERS; + + return 0; +} /* end H5FD_multi_dxpl_cmp_cb() */ + + +/*------------------------------------------------------------------------- + * Function: H5FD_multi_dxpl_cls_cb + * + * Purpose: Multi VFD DXPL property 'close' callback + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Quincey Koziol + * Wednesday, August 15, 2012 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5FD_multi_dxpl_cls_cb(const char *name, size_t size, void *_dx) +{ + H5FD_multi_dxpl_t *dx = (H5FD_multi_dxpl_t *)_dx; + static const char *func = "H5FD_multi_dxpl_cls_cb"; /* Function Name for error reporting */ + + /* Shut compiler up */ + name = name; + + /* Sanity check */ + assert(size == sizeof(H5FD_multi_dxpl_t)); + + ALL_MEMBERS(mt) { + if(dx->memb_dxpl[mt] >= 0) + if(H5Idec_ref(dx->memb_dxpl[mt]) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTDEC, "can't increment ref. count for multi VFD property", -1) + } END_MEMBERS; + + return 0; +} /* end H5FD_multi_dxpl_cls_cb() */ + + + +/*------------------------------------------------------------------------- * Function: H5Pset_dxpl_multi * * Purpose: Set the data transfer property list DXPL_ID to use the multi @@ -613,7 +736,8 @@ H5Pset_dxpl_multi(hid_t dxpl_id, const hid_t *memb_dxpl) { H5FD_multi_dxpl_t dx; H5FD_mem_t mt; - static const char *func="H5FDset_dxpl_multi"; /* Function Name for error reporting */ + htri_t prop_exists; /* Whether the multi VFD DXPL property already exists */ + static const char *func = "H5FDset_dxpl_multi"; /* Function Name for error reporting */ /*NO TRACE*/ @@ -621,26 +745,56 @@ H5Pset_dxpl_multi(hid_t dxpl_id, const hid_t *memb_dxpl) H5Eclear2(H5E_DEFAULT); /* Check arguments */ - if (TRUE!=H5Pisa_class(dxpl_id, H5P_DATASET_XFER)) + if(TRUE != H5Pisa_class(dxpl_id, H5P_DATASET_XFER)) H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_BADTYPE, "not a data transfer property list", -1) - if (!memb_dxpl) + if(!memb_dxpl) H5Epush_ret(func, H5E_ERR_CLS, H5E_INTERNAL, H5E_BADVALUE, "invalid pointer", -1) - for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; mt=(H5FD_mem_t)(mt+1)) { - if (memb_dxpl[mt]!=H5P_DEFAULT && TRUE!=H5Pisa_class(memb_dxpl[mt], H5P_DATASET_XFER)) + for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) { + if(memb_dxpl[mt] != H5P_DEFAULT && TRUE != H5Pisa_class(memb_dxpl[mt], H5P_DATASET_XFER)) H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_BADTYPE, "not a data transfer property list", -1) - } + } /* end for */ + + /* Check for existence of multi VFD DXPL property in DXPL */ + if((prop_exists = H5Pexist(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME)) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't check for multi VFD property", -1) + + /* Copy the DXPLs to internal property, converting "generic" default + * property lists into default dataset transfer property lists */ + for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) { + if(memb_dxpl[mt] == H5P_DEFAULT) + dx.memb_dxpl[mt] = H5P_DATASET_XFER_DEFAULT; + else { + if((dx.memb_dxpl[mt] = H5Pcopy(memb_dxpl[mt])) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTCOPY, "can't copy dataset transfer property list", -1) + } /* end else */ + } /* end for */ + + /* Clear previous property, if it exists */ + if(prop_exists) { + H5FD_multi_dxpl_t old_dx; + + /* Get the old DXPL value */ + if(H5Pget(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, &old_dx) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't get previous property value", -1) - /* Initialize the data transfer property list */ - memcpy(dx.memb_dxpl, memb_dxpl, H5FD_MEM_NTYPES*sizeof(hid_t)); + ALL_MEMBERS(mt) { + if(old_dx.memb_dxpl[mt] >= 0) + if(H5Pclose(old_dx.memb_dxpl[mt]) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTCLOSEOBJ, "can't close property list", -1) + } END_MEMBERS; - /* Convert "generic" default property lists into default dataset transfer property lists */ - for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; mt=(H5FD_mem_t)(mt+1)) { - if (dx.memb_dxpl[mt]==H5P_DEFAULT) - dx.memb_dxpl[mt]=H5P_DATASET_XFER_DEFAULT; - } + /* Set the new value */ + if(H5Pset(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, &dx) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't get previous property value", -1) + } /* end if */ + else { + /* Insert multi VFD DXPL property into property list */ + if(H5Pinsert2(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, H5FD_MULTI_DXPL_PROP_SIZE, &dx, NULL, NULL, NULL, H5FD_multi_dxpl_copy_cb, H5FD_multi_dxpl_cmp_cb, H5FD_multi_dxpl_cls_cb) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTINSERT, "can't insert multi VFD DXPL property", -1) + } /* end else */ - return H5Pset_driver(dxpl_id, H5FD_MULTI, &dx); -} + return 0; +} /* end H5Pset_dxpl_multi() */ /*------------------------------------------------------------------------- @@ -663,33 +817,42 @@ H5Pset_dxpl_multi(hid_t dxpl_id, const hid_t *memb_dxpl) herr_t H5Pget_dxpl_multi(hid_t dxpl_id, hid_t *memb_dxpl/*out*/) { - H5FD_multi_dxpl_t *dx; + H5FD_multi_dxpl_t dx; H5FD_mem_t mt; - static const char *func="H5FDget_dxpl_multi"; /* Function Name for error reporting */ + htri_t prop_exists; /* Whether the multi VFD DXPL property already exists */ + static const char *func = "H5FDget_dxpl_multi"; /* Function Name for error reporting */ /*NO TRACE*/ /* Clear the error stack */ H5Eclear2(H5E_DEFAULT); - if (TRUE!=H5Pisa_class(dxpl_id, H5P_DATASET_XFER)) + /* Argument checking */ + if(TRUE != H5Pisa_class(dxpl_id, H5P_DATASET_XFER)) H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_BADTYPE, "not a file access property list", -1) - if (H5FD_MULTI!=H5Pget_driver(dxpl_id)) - H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_BADVALUE, "incorrect VFL driver", -1) - if(NULL == (dx = (H5FD_multi_dxpl_t *)H5Pget_driver_info(dxpl_id))) - H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_BADVALUE, "bad VFL driver info", -1) - if (memb_dxpl) { - for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; mt=(H5FD_mem_t)(mt+1)) { - if (dx->memb_dxpl[mt]>=0) - memb_dxpl[mt] = H5Pcopy(dx->memb_dxpl[mt]); + if(memb_dxpl) { + /* Check for existence of multi VFD DXPL property in DXPL */ + if((prop_exists = H5Pexist(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME)) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't check for multi VFD property", -1) + if(!prop_exists) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "multi VFD DXPL property not set", -1) + + /* Get the DXPL value */ + if(H5Pget(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, &dx) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't get property value", -1) + + /* Deep copy the multi VFD DXPL value */ + for(mt = H5FD_MEM_DEFAULT; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) { + if(dx.memb_dxpl[mt] >= 0) + memb_dxpl[mt] = H5Pcopy(dx.memb_dxpl[mt]); else - memb_dxpl[mt] = dx->memb_dxpl[mt]; /*default or bad ID */ - } - } + memb_dxpl[mt] = dx.memb_dxpl[mt]; /*default or bad ID */ + } /* end for */ + } /* end if */ return 0; -} +} /* end H5Pget_dxpl_multi() */ /*------------------------------------------------------------------------- @@ -1106,90 +1269,6 @@ H5FD_multi_fapl_free(void *_fa) /*------------------------------------------------------------------------- - * Function: H5FD_multi_dxpl_copy - * - * Purpose: Copes the multi-specific data transfer properties. - * - * Return: Success: Ptr to new property list - * - * Failure: NULL - * - * Programmer: Robb Matzke - * Wednesday, August 4, 1999 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void * -H5FD_multi_dxpl_copy(const void *_old_dx) -{ - const H5FD_multi_dxpl_t *old_dx = (const H5FD_multi_dxpl_t*)_old_dx; - H5FD_multi_dxpl_t *new_dx = (H5FD_multi_dxpl_t *)malloc(sizeof(H5FD_multi_dxpl_t)); - int nerrors = 0; - static const char *func="H5FD_multi_dxpl_copy"; /* Function Name for error reporting */ - - assert(new_dx); - - /* Clear the error stack */ - H5Eclear2(H5E_DEFAULT); - - memcpy(new_dx, old_dx, sizeof(H5FD_multi_dxpl_t)); - ALL_MEMBERS(mt) { - if (old_dx->memb_dxpl[mt]>=0) { - new_dx->memb_dxpl[mt] = H5Pcopy(old_dx->memb_dxpl[mt]); - if (new_dx->memb_dxpl[mt]<0) nerrors++; - } - } END_MEMBERS; - - if (nerrors) { - ALL_MEMBERS(mt) { - (void)H5Pclose(new_dx->memb_dxpl[mt]); - } END_MEMBERS; - free(new_dx); - H5Epush_ret(func, H5E_ERR_CLS, H5E_INTERNAL, H5E_BADVALUE, "invalid freespace objects", NULL) - } - return new_dx; -} - - -/*------------------------------------------------------------------------- - * Function: H5FD_multi_dxpl_free - * - * Purpose: Frees the multi-specific data transfer properties. - * - * Return: Success: 0 - * - * Failure: -1 - * - * Programmer: Robb Matzke - * Wednesday, August 4, 1999 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5FD_multi_dxpl_free(void *_dx) -{ - H5FD_multi_dxpl_t *dx = (H5FD_multi_dxpl_t*)_dx; - static const char *func="H5FD_multi_dxpl_free"; /* Function Name for error reporting */ - - /* Clear the error stack */ - H5Eclear2(H5E_DEFAULT); - - ALL_MEMBERS(mt) { - if (dx->memb_dxpl[mt]>=0) - if(H5Pclose(dx->memb_dxpl[mt])<0) - H5Epush_ret(func, H5E_ERR_CLS, H5E_FILE, H5E_CANTCLOSEOBJ, "can't close property list", -1) - } END_MEMBERS; - - free(dx); - return 0; -} - - -/*------------------------------------------------------------------------- * Function: H5FD_multi_open * * Purpose: Creates and/or opens a multi HDF5 file. @@ -1823,25 +1902,33 @@ H5FD_multi_free(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsi * Programmer: Robb Matzke * Wednesday, August 4, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t -H5FD_multi_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, - void *_buf/*out*/) +H5FD_multi_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, + size_t size, void *_buf/*out*/) { H5FD_multi_t *file = (H5FD_multi_t*)_file; - H5FD_multi_dxpl_t *dx=NULL; - H5FD_mem_t mt, mmt, hi=H5FD_MEM_DEFAULT; - haddr_t start_addr=0; + H5FD_multi_dxpl_t dx; + htri_t prop_exists = FALSE; /* Whether the multi VFD DXPL property already exists */ + H5FD_mem_t mt, mmt, hi = H5FD_MEM_DEFAULT; + haddr_t start_addr = 0; + static const char *func = "H5FD_multi_read"; /* Function Name for error reporting */ /* Clear the error stack */ H5Eclear2(H5E_DEFAULT); /* Get the data transfer properties */ - if(H5P_FILE_ACCESS_DEFAULT != dxpl_id && H5FD_MULTI == H5Pget_driver(dxpl_id)) - dx = (H5FD_multi_dxpl_t *)H5Pget_driver_info(dxpl_id); + if(H5P_FILE_ACCESS_DEFAULT != dxpl_id) { + /* Check for existence of multi VFD DXPL property in DXPL */ + if((prop_exists = H5Pexist(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME)) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't check for multi VFD property", -1) + + /* Get the DXPL value, if it exists */ + if(prop_exists) + if(H5Pget(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, &dx) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't get property value", -1) + } /* end if */ /* Find the file to which this address belongs */ for(mt = H5FD_MEM_SUPER; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) { @@ -1850,18 +1937,19 @@ H5FD_multi_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, siz mmt = mt; assert(mmt > 0 && mmt < H5FD_MEM_NTYPES); - if (file->fa.memb_addr[mmt]>addr) continue; - if (file->fa.memb_addr[mmt]>=start_addr) { + if(file->fa.memb_addr[mmt] > addr) + continue; + if(file->fa.memb_addr[mmt] >= start_addr) { start_addr = file->fa.memb_addr[mmt]; hi = mmt; - } - } - assert(hi>0); + } /* end if */ + } /* end for */ + assert(hi > 0); /* Read from that member */ - return H5FDread(file->memb[hi], type, dx?dx->memb_dxpl[hi]:H5P_DEFAULT, - addr-start_addr, size, _buf); -} + return H5FDread(file->memb[hi], type, (prop_exists ? dx.memb_dxpl[hi] : H5P_DEFAULT), + addr - start_addr, size, _buf); +} /* end H5FD_multi_read() */ /*------------------------------------------------------------------------- @@ -1878,45 +1966,54 @@ H5FD_multi_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, siz * Programmer: Robb Matzke * Wednesday, August 4, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t -H5FD_multi_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, - const void *_buf) +H5FD_multi_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, + size_t size, const void *_buf) { H5FD_multi_t *file = (H5FD_multi_t*)_file; - H5FD_multi_dxpl_t *dx=NULL; - H5FD_mem_t mt, mmt, hi=H5FD_MEM_DEFAULT; - haddr_t start_addr=0; + H5FD_multi_dxpl_t dx; + htri_t prop_exists = FALSE; /* Whether the multi VFD DXPL property already exists */ + H5FD_mem_t mt, mmt, hi = H5FD_MEM_DEFAULT; + haddr_t start_addr = 0; + static const char *func = "H5FD_multi_read"; /* Function Name for error reporting */ /* Clear the error stack */ H5Eclear2(H5E_DEFAULT); /* Get the data transfer properties */ - if(H5P_FILE_ACCESS_DEFAULT != dxpl_id && H5FD_MULTI == H5Pget_driver(dxpl_id)) - dx = (H5FD_multi_dxpl_t *)H5Pget_driver_info(dxpl_id); + if(H5P_FILE_ACCESS_DEFAULT != dxpl_id) { + /* Check for existence of multi VFD DXPL property in DXPL */ + if((prop_exists = H5Pexist(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME)) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't check for multi VFD property", -1) + + /* Get the DXPL value, if it exists */ + if(prop_exists) + if(H5Pget(dxpl_id, H5FD_MULTI_DXPL_PROP_NAME, &dx) < 0) + H5Epush_ret(func, H5E_ERR_CLS, H5E_PLIST, H5E_CANTGET, "can't get property value", -1) + } /* end if */ /* Find the file to which this address belongs */ for(mt = H5FD_MEM_SUPER; mt < H5FD_MEM_NTYPES; mt = (H5FD_mem_t)(mt + 1)) { mmt = file->fa.memb_map[mt]; if(H5FD_MEM_DEFAULT == mmt) mmt = mt; - assert(mmt>0 && mmt<H5FD_MEM_NTYPES); + assert(mmt > 0 && mmt<H5FD_MEM_NTYPES); - if (file->fa.memb_addr[mmt]>addr) continue; - if (file->fa.memb_addr[mmt]>=start_addr) { + if(file->fa.memb_addr[mmt] > addr) + continue; + if(file->fa.memb_addr[mmt] >= start_addr) { start_addr = file->fa.memb_addr[mmt]; hi = mmt; - } - } - assert(hi>0); + } /* end if */ + } /* end for */ + assert(hi > 0); /* Write to that member */ - return H5FDwrite(file->memb[hi], type, dx?dx->memb_dxpl[hi]:H5P_DEFAULT, - addr-start_addr, size, _buf); -} + return H5FDwrite(file->memb[hi], type, (prop_exists ? dx.memb_dxpl[hi] : H5P_DEFAULT), + addr - start_addr, size, _buf); +} /* end H5FD_multi_write() */ /*------------------------------------------------------------------------- @@ -1931,8 +2028,6 @@ H5FD_multi_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, si * Programmer: Robb Matzke * Wednesday, August 4, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ static herr_t diff --git a/src/H5FDprivate.h b/src/H5FDprivate.h index 9c19562..64b71d4 100644 --- a/src/H5FDprivate.h +++ b/src/H5FDprivate.h @@ -96,8 +96,6 @@ H5_DLL herr_t H5FD_sb_decode(H5FD_t *file, const char *name, const uint8_t *buf) H5_DLL void *H5FD_fapl_get(H5FD_t *file); H5_DLL herr_t H5FD_fapl_open(struct H5P_genplist_t *plist, hid_t driver_id, const void *driver_info); H5_DLL herr_t H5FD_fapl_close(hid_t driver_id, void *fapl); -H5_DLL herr_t H5FD_dxpl_open(struct H5P_genplist_t *plist, hid_t driver_id, const void *driver_info); -H5_DLL herr_t H5FD_dxpl_close(hid_t driver_id, void *dxpl); H5_DLL hid_t H5FD_register(const void *cls, size_t size, hbool_t app_ref); H5_DLL H5FD_t *H5FD_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); diff --git a/src/H5FDsec2.c b/src/H5FDsec2.c index 085465c..b65fee9 100644 --- a/src/H5FDsec2.c +++ b/src/H5FDsec2.c @@ -191,7 +191,7 @@ static const H5FD_class_t H5FD_sec2_g = { H5FD_sec2_truncate, /*truncate */ NULL, /*lock */ NULL, /*unlock */ - H5FD_FLMAP_SINGLE /*fl_map */ + H5FD_FLMAP_DICHOTOMY /*fl_map */ }; /* Declare a free list to manage the H5FD_sec2_t struct */ diff --git a/src/H5FDstdio.c b/src/H5FDstdio.c index 4733eba..43bf6b9 100644 --- a/src/H5FDstdio.c +++ b/src/H5FDstdio.c @@ -226,7 +226,7 @@ static const H5FD_class_t H5FD_stdio_g = { H5FD_stdio_truncate, /* truncate */ NULL, /* lock */ NULL, /* unlock */ - H5FD_FLMAP_SINGLE /* fl_map */ + H5FD_FLMAP_DICHOTOMY /* fl_map */ }; @@ -284,6 +284,50 @@ HDfprintf(stderr, "%s: Deleting free space manager, fs_addr = %a\n", FUNC, fs_ad cache_udata.cls_init_udata = NULL; cache_udata.addr = fs_addr; +#ifdef H5FS_DEBUG +{ + unsigned fspace_status = 0; /* Free space section info's status in the metadata cache */ + + /* Sanity check */ + HDassert(H5F_addr_defined(fs_addr)); + + /* Check the free space section info's status in the metadata cache */ + if(H5AC_get_entry_status(f, fs_addr, &fspace_status) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "unable to check metadata cache status for free space section info") + + HDfprintf(stderr, "%s: fspace_status = %0x: ", FUNC, fspace_status); + if(fspace_status) { + hbool_t printed = FALSE; + + if(fspace_status & H5AC_ES__IN_CACHE) { + HDfprintf(stderr, "H5AC_ES__IN_CACHE"); + printed = TRUE; + } /* end if */ + if(fspace_status & H5AC_ES__IS_DIRTY) { + HDfprintf(stderr, "%sH5AC_ES__IS_DIRTY", (printed ? " | " : "")); + printed = TRUE; + } /* end if */ + if(fspace_status & H5AC_ES__IS_PROTECTED) { + HDfprintf(stderr, "%sH5AC_ES__IS_PROTECTED", (printed ? " | " : "")); + printed = TRUE; + } /* end if */ + if(fspace_status & H5AC_ES__IS_PINNED) { + HDfprintf(stderr, "%sH5AC_ES__IS_PINNED", (printed ? " | " : "")); + printed = TRUE; + } /* end if */ + if(fspace_status & H5AC_ES__IS_FLUSH_DEP_PARENT) { + HDfprintf(stderr, "%sH5AC_ES__IS_FLUSH_DEP_PARENT", (printed ? " | " : "")); + printed = TRUE; + } /* end if */ + if(fspace_status & H5AC_ES__IS_FLUSH_DEP_CHILD) { + HDfprintf(stderr, "%sH5AC_ES__IS_FLUSH_DEP_CHILD", (printed ? " | " : "")); + printed = TRUE; + } /* end if */ + } /* end if */ + HDfprintf(stderr, "\n"); +} +#endif /* H5FS_DEBUG */ + /* Protect the free space header */ if(NULL == (fspace = (H5FS_t *)H5AC_protect(f, dxpl_id, H5AC_FSPACE_HDR, fs_addr, &cache_udata, H5AC_WRITE))) HGOTO_ERROR(H5E_FSPACE, H5E_CANTPROTECT, FAIL, "unable to protect free space header") @@ -324,9 +368,14 @@ HDfprintf(stderr, "%s: Done expunging free space section info from cache\n", FUN #endif /* H5FS_DEBUG */ } /* end if */ else { +#ifdef H5FS_DEBUG +HDfprintf(stderr, "%s: Deleting free space section info from file\n", FUNC); +#endif /* H5FS_DEBUG */ /* Release the space in the file */ - if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_addr, fspace->alloc_sect_size) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to release free space sections") + if(!H5F_IS_TMP_ADDR(f, fspace->sect_addr)) { + if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_addr, fspace->alloc_sect_size) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to release free space sections") + } /* end if */ } /* end else */ } /* end if */ @@ -387,8 +436,14 @@ HDfprintf(stderr, "%s: Real sections to store in file\n", FUNC); HDassert(fspace->sect_size > 0); /* Allocate space for the section info in file */ - if(HADDR_UNDEF == (fspace->sect_addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_size))) - HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections") + if(H5F_USE_TMP_SPACE(f)) { + if(HADDR_UNDEF == (fspace->sect_addr = H5MF_alloc_tmp(f, fspace->sect_size))) + HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections") + } /* end if */ + else { + if(HADDR_UNDEF == (fspace->sect_addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_size))) + HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections") + } /* end if */ fspace->alloc_sect_size = (size_t)fspace->sect_size; /* Mark free space header as dirty */ @@ -430,19 +485,9 @@ HDfprintf(stderr, "%s: Section info allocated though\n", FUNC); HDfprintf(stderr, "%s: Section info is for file free space\n", FUNC); #endif /* H5FS_DEBUG */ /* Try to shrink the file or absorb the section info into a block aggregator */ - if((status = H5MF_try_shrink(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_addr, fspace->alloc_sect_size)) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTMERGE, FAIL, "can't check for absorbing section info") - else if(status == FALSE) { - /* Section info can't "go away", but it's free. Allow - * header to record it - */ -#ifdef H5FS_DEBUG -HDfprintf(stderr, "%s: Section info can't 'go away', header will own it\n", FUNC); -#endif /* H5FS_DEBUG */ - } /* end if */ - else { + if(H5F_IS_TMP_ADDR(f, fspace->sect_addr)) { #ifdef H5FS_DEBUG -HDfprintf(stderr, "%s: Section info went 'go away'\n", FUNC); +HDfprintf(stderr, "%s: Section info in temp. address space went 'go away'\n", FUNC); #endif /* H5FS_DEBUG */ /* Reset section info in header */ fspace->sect_addr = HADDR_UNDEF; @@ -451,6 +496,30 @@ HDfprintf(stderr, "%s: Section info went 'go away'\n", FUNC); /* Mark free space header as dirty */ if(H5AC_mark_entry_dirty(fspace) < 0) HGOTO_ERROR(H5E_FSPACE, H5E_CANTMARKDIRTY, FAIL, "unable to mark free space header as dirty") + } /* end if */ + else { + if((status = H5MF_try_shrink(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_addr, fspace->alloc_sect_size)) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTMERGE, FAIL, "can't check for absorbing section info") + else if(status == FALSE) { + /* Section info can't "go away", but it's free. Allow + * header to record it + */ +#ifdef H5FS_DEBUG + HDfprintf(stderr, "%s: Section info can't 'go away', header will own it\n", FUNC); +#endif /* H5FS_DEBUG */ + } /* end if */ + else { +#ifdef H5FS_DEBUG + HDfprintf(stderr, "%s: Section info went 'go away'\n", FUNC); +#endif /* H5FS_DEBUG */ + /* Reset section info in header */ + fspace->sect_addr = HADDR_UNDEF; + fspace->alloc_sect_size = 0; + + /* Mark free space header as dirty */ + if(H5AC_mark_entry_dirty(fspace) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTMARKDIRTY, FAIL, "unable to mark free space header as dirty") + } /* end else */ } /* end else */ } /* end if */ else { @@ -469,10 +538,12 @@ HDfprintf(stderr, "%s: Section info is NOT for file free space\n", FUNC); HGOTO_ERROR(H5E_FSPACE, H5E_CANTMARKDIRTY, FAIL, "unable to mark free space header as dirty") /* Free previous serialized sections disk space */ - if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, old_sect_addr, old_alloc_sect_size) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space sections") - } /* end if */ - } /* end else */ + if(!H5F_IS_TMP_ADDR(f, old_sect_addr)) { + if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, old_sect_addr, old_alloc_sect_size) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space sections") + } /* end if */ + } /* end else */ + } /* end if */ /* Destroy section info */ if(H5FS_sinfo_dest(fspace->sinfo) < 0) @@ -802,11 +873,11 @@ H5FS_alloc_sect(H5F_t *f, H5FS_t *fspace, hid_t dxpl_id) HDassert(fspace); if(!H5F_addr_defined(fspace->sect_addr) && fspace->sinfo && fspace->serial_sect_count > 0) { - /* Allocate space for section info from aggregator/vfd */ - /* (The original version called H5MF_alloc(), but that may cause sect_size to change again) */ - if(HADDR_UNDEF == (fspace->sect_addr = H5MF_aggr_vfd_alloc(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_size))) - HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for section info") - + /* Allocate space for section info from aggregator/vfd (or temp. address space) */ + /* (The original version called H5MF_alloc(), but that may cause sect_size to change again) */ + /* (This routine is only called during file close operations, so don't allocate from temp. address space) */ + if(HADDR_UNDEF == (fspace->sect_addr = H5MF_aggr_vfd_alloc(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, fspace->sect_size))) + HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for section info") fspace->alloc_sect_size = fspace->sect_size; /* Mark free-space header as dirty */ @@ -882,8 +953,10 @@ H5FS_free(H5F_t *f, H5FS_t *fspace, hid_t dxpl_id) fspace->alloc_sect_size = 0; /* Free space for the free-space manager section info */ - if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, saved_addr, saved_size) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to release free space sections") + if(!H5F_IS_TMP_ADDR(f, saved_addr)) { + if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, saved_addr, saved_size) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to release free space sections") + } /* end if */ /* Mark free-space manager header as dirty */ if(H5FS_dirty(fspace) < 0) @@ -1120,7 +1193,7 @@ herr_t H5FS_assert(const H5FS_t *fspace) { FUNC_ENTER_NOAPI_NOINIT_NOERR -#ifndef QAK +#ifdef QAK HDfprintf(stderr, "%s: fspace->tot_sect_count = %Hu\n", "H5FS_assert", fspace->tot_sect_count); #endif /* QAK */ diff --git a/src/H5FScache.c b/src/H5FScache.c index d186404..e441398 100644 --- a/src/H5FScache.c +++ b/src/H5FScache.c @@ -306,7 +306,7 @@ H5FS_cache_hdr_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5F if(fspace->sinfo->dirty) { if(fspace->serial_sect_count > 0) { /* Check if we need to allocate space for section info */ - if(!H5F_addr_defined(fspace->sect_addr)) { + if(H5F_IS_TMP_ADDR(f, fspace->sect_addr) || !H5F_addr_defined(fspace->sect_addr)) { /* Sanity check */ HDassert(fspace->sect_size > 0); @@ -884,6 +884,32 @@ H5FS_cache_sinfo_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H HDassert((size_t)(p - buf) == sinfo->fspace->sect_size); HDassert(sinfo->fspace->sect_size <= sinfo->fspace->alloc_sect_size); + /* Check for section info at temporary address */ + if(H5F_IS_TMP_ADDR(f, sinfo->fspace->sect_addr)) { + /* Sanity check */ + HDassert(sinfo->fspace->sect_size > 0); + HDassert(H5F_addr_eq(sinfo->fspace->sect_addr, addr)); + + /* Allocate space for the section info in file */ + if(HADDR_UNDEF == (addr = H5MF_alloc(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, sinfo->fspace->sect_size))) + HGOTO_ERROR(H5E_FSPACE, H5E_NOSPACE, FAIL, "file allocation failed for free space sections") + sinfo->fspace->alloc_sect_size = (size_t)sinfo->fspace->sect_size; + + /* Sanity check */ + HDassert(!H5F_addr_eq(sinfo->fspace->sect_addr, addr)); + + /* Let the metadata cache know the section info moved */ + if(H5AC_move_entry(f, H5AC_FSPACE_SINFO, sinfo->fspace->sect_addr, addr) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTMOVE, FAIL, "unable to move indirect block") + + /* Update the internal address for the section info */ + sinfo->fspace->sect_addr = addr; + + /* Mark free space header as dirty */ + if(H5AC_mark_entry_dirty(sinfo->fspace) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTMARKDIRTY, FAIL, "unable to mark free space header as dirty") + } /* end if */ + /* Write buffer to disk */ if(H5F_block_write(f, H5FD_MEM_FSPACE_SINFO, sinfo->fspace->sect_addr, (size_t)sinfo->fspace->sect_size, dxpl_id, buf) < 0) HGOTO_ERROR(H5E_FSPACE, H5E_CANTFLUSH, FAIL, "unable to save free space sections to disk") @@ -936,8 +962,9 @@ H5FS_cache_sinfo_dest(H5F_t *f, H5FS_sinfo_t *sinfo) /* Release the space on disk */ /* (XXX: Nasty usage of internal DXPL value! -QAK) */ - if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, H5AC_dxpl_id, sinfo->cache_info.addr, (hsize_t)sinfo->fspace->alloc_sect_size) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space section info") + if(!H5F_IS_TMP_ADDR(f, sinfo->cache_info.addr)) + if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, H5AC_dxpl_id, sinfo->cache_info.addr, (hsize_t)sinfo->fspace->alloc_sect_size) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space section info") } /* end if */ /* Destroy free space info */ diff --git a/src/H5FSprivate.h b/src/H5FSprivate.h index f6a0034..8cb3f95 100644 --- a/src/H5FSprivate.h +++ b/src/H5FSprivate.h @@ -200,6 +200,8 @@ H5_DLL herr_t H5FS_sect_stats(const H5FS_t *fspace, hsize_t *tot_space, hsize_t *nsects); H5_DLL herr_t H5FS_sect_change_class(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5FS_section_info_t *sect, unsigned new_class); +H5_DLL htri_t H5FS_sect_try_shrink_eoa(const H5F_t *f, hid_t dxpl_id, const H5FS_t *fspace, void *op_data); +H5_DLL herr_t H5FS_sect_query_last_sect(const H5FS_t *fspace, haddr_t *sect_addr, hsize_t *sect_size); /* Statistics routine */ H5_DLL herr_t H5FS_stat_info(const H5F_t *f, const H5FS_t *frsp, H5FS_stat_t *stats); diff --git a/src/H5FSsection.c b/src/H5FSsection.c index 0f126c2..fa24f85 100644 --- a/src/H5FSsection.c +++ b/src/H5FSsection.c @@ -445,8 +445,10 @@ HDfprintf(stderr, "%s: Relinquishing section info ownership\n", FUNC); HDfprintf(stderr, "%s: Freeing section info on disk, old_sect_addr = %a, old_alloc_sect_size = %Hu\n", FUNC, old_sect_addr, old_alloc_sect_size); #endif /* H5FS_SINFO_DEBUG */ /* Release space for section info in file */ - if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, old_sect_addr, old_alloc_sect_size) < 0) - HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space sections") + if(!H5F_IS_TMP_ADDR(f, old_sect_addr)) { + if(H5MF_xfree(f, H5FD_MEM_FSPACE_SINFO, dxpl_id, old_sect_addr, old_alloc_sect_size) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTFREE, FAIL, "unable to free free space sections") + } /* end if */ } /* end if */ } /* end if */ @@ -2375,3 +2377,114 @@ HDfprintf(stderr, "%s: sect->size = %Hu, sect->addr = %a, sect->type = %u\n", "H } /* end H5FS_sect_assert() */ #endif /* H5FS_DEBUG_ASSERT */ + +/*------------------------------------------------------------------------- + * Function: H5FS_sect_try_shrink_eoa + * + * Purpose: To shrink the last section on the merge list if the section + * is at EOF. + * + * Return: Success: non-negative (TRUE/FALSE) + * Failure: negative + * + * Programmer: Vailin Choi + * + *------------------------------------------------------------------------- + */ +htri_t +H5FS_sect_try_shrink_eoa(const H5F_t *f, hid_t dxpl_id, const H5FS_t *fspace, void *op_data) +{ + hbool_t sinfo_valid = FALSE; /* Whether the section info is valid */ + hbool_t section_removed = FALSE; /* Whether a section was removed */ + htri_t ret_value = FALSE; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Check arguments. */ + HDassert(fspace); + + if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTGET, FAIL, "can't get section info") + sinfo_valid = TRUE; + + if(fspace->sinfo && fspace->sinfo->merge_list) { + H5SL_node_t *last_node; /* Last node in merge list */ + + /* Check for last node in the merge list */ + if(NULL != (last_node = H5SL_last(fspace->sinfo->merge_list))) { + H5FS_section_info_t *tmp_sect; /* Temporary free space section */ + H5FS_section_class_t *tmp_sect_cls; /* Temporary section's class */ + + /* Get the pointer to the last section, from the last node */ + tmp_sect = (H5FS_section_info_t *)H5SL_item(last_node); + HDassert(tmp_sect); + tmp_sect_cls = &fspace->sect_cls[tmp_sect->type]; + if(tmp_sect_cls->can_shrink) { + /* Check if the section can be shrunk away */ + if((ret_value = (*tmp_sect_cls->can_shrink)(tmp_sect, op_data)) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTSHRINK, FAIL, "can't check for shrinking container") + if(ret_value > 0) { + HDassert(tmp_sect_cls->shrink); + + /* Remove section from free space manager */ + if(H5FS_sect_remove_real(fspace, tmp_sect) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTRELEASE, FAIL, "can't remove section from internal data structures") + section_removed = TRUE; + + /* Shrink away section */ + if((*tmp_sect_cls->shrink)(&tmp_sect, op_data) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTINSERT, FAIL, "can't shrink free space container") + } /* end if */ + } /* end if */ + } /* end if */ + } /* end if */ + +done: + /* Release the section info */ + if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0) + HDONE_ERROR(H5E_FSPACE, H5E_CANTRELEASE, FAIL, "can't release section info") + + FUNC_LEAVE_NOAPI(ret_value) +} /* H5FS_sect_try_shrink_eoa() */ + + +/*------------------------------------------------------------------------- + * Function: H5FS_sect_query_last_sect + * + * Purpose: Retrieve info about the last section on the merge list + * + * Return: Success: non-negative + * Failure: negative + * + * Programmer: Vailin Choi + * + *------------------------------------------------------------------------- + */ +herr_t +H5FS_sect_query_last_sect(const H5FS_t *fspace, haddr_t *sect_addr, hsize_t *sect_size) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Check arguments. */ + HDassert(fspace); + + if(fspace->sinfo && fspace->sinfo->merge_list) { + H5SL_node_t *last_node; /* Last node in merge list */ + + /* Check for last node in the merge list */ + if(NULL != (last_node = H5SL_last(fspace->sinfo->merge_list))) { + H5FS_section_info_t *tmp_sect; /* Temporary free space section */ + + /* Get the pointer to the last section, from the last node */ + tmp_sect = (H5FS_section_info_t *)H5SL_item(last_node); + HDassert(tmp_sect); + if(sect_addr) + *sect_addr = tmp_sect->addr; + if(sect_size) + *sect_size = tmp_sect->size; + } /* end if */ + } /* end if */ + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* H5FS_sect_query_last_sect() */ + diff --git a/src/H5Fsuper.c b/src/H5Fsuper.c index 8bf4405..8205392 100644 --- a/src/H5Fsuper.c +++ b/src/H5Fsuper.c @@ -516,7 +516,7 @@ H5F_super_init(H5F_t *f, hid_t dxpl_id) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to set EOA value for superblock") /* Insert superblock into cache, pinned */ - if(H5AC_insert_entry(f, dxpl_id, H5AC_SUPERBLOCK, (haddr_t)0, sblock, H5AC__PIN_ENTRY_FLAG) < 0) + if(H5AC_insert_entry(f, dxpl_id, H5AC_SUPERBLOCK, (haddr_t)0, sblock, H5AC__PIN_ENTRY_FLAG | H5AC__FLUSH_LAST_FLAG | H5AC__FLUSH_COLLECTIVELY_FLAG) < 0) HGOTO_ERROR(H5E_CACHE, H5E_CANTINS, FAIL, "can't add superblock to cache") sblock_in_cache = TRUE; diff --git a/src/H5Fsuper_cache.c b/src/H5Fsuper_cache.c index cc1137b..48fd139 100644 --- a/src/H5Fsuper_cache.c +++ b/src/H5Fsuper_cache.c @@ -153,6 +153,12 @@ H5F_sblock_load(H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr, void *_udata) if(NULL == (sblock = H5FL_CALLOC(H5F_super_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed") + /* The superblock must be flushed last (and collectively in parallel) */ + sblock->cache_info.flush_me_last = TRUE; +#ifdef H5_HAVE_PARALLEL + sblock->cache_info.flush_me_collectively = TRUE; +#endif + /* Read fixed-size portion of the superblock */ p = sbuf; H5_CHECK_OVERFLOW(fixed_size, size_t, haddr_t); @@ -638,6 +644,15 @@ H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, HDassert(f); HDassert(H5F_addr_eq(addr, 0)); HDassert(sblock); + + /* Assert that the superblock is marked as being flushed last (and + collectively in parallel) */ + /* (We'll rely on the cache to make sure it actually *is* flushed + last (and collectively in parallel), but this check doesn't hurt) */ + HDassert(sblock->cache_info.flush_me_last); +#ifdef H5_HAVE_PARALLEL + HDassert(sblock->cache_info.flush_me_collectively); +#endif if(sblock->cache_info.is_dirty) { uint8_t buf[H5F_MAX_SUPERBLOCK_SIZE + H5F_MAX_DRVINFOBLOCK_SIZE]; /* Superblock & driver info blockencoding buffer */ @@ -677,10 +692,15 @@ H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, *p++ = 0; /*reserved */ } /* end if */ + /* Encode the base address */ H5F_addr_encode(f, &p, sblock->base_addr); + + /* Encode the address of global free-space index */ H5F_addr_encode(f, &p, sblock->ext_addr); rel_eoa = H5FD_get_eoa(f->shared->lf, H5FD_MEM_SUPER); H5F_addr_encode(f, &p, (rel_eoa + sblock->base_addr)); + + /* Encode the driver informaton block address */ H5F_addr_encode(f, &p, sblock->driver_addr); /* Encode the root group object entry, including the cached stab info */ @@ -731,9 +751,12 @@ H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, *p++ = (uint8_t)H5F_SIZEOF_SIZE(f); *p++ = sblock->status_flags; - /* Base, superblock extension & end of file addresses */ + /* Encode the base address */ H5F_addr_encode(f, &p, sblock->base_addr); + + /* Encode the address of the superblock extension */ H5F_addr_encode(f, &p, sblock->ext_addr); + rel_eoa = H5FD_get_eoa(f->shared->lf, H5FD_MEM_SUPER); H5F_addr_encode(f, &p, (rel_eoa + sblock->base_addr)); @@ -767,13 +790,18 @@ H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, /* Check for newer version of superblock format & superblock extension */ if(sblock->super_vers >= HDF5_SUPERBLOCK_VERSION_2 && H5F_addr_defined(sblock->ext_addr)) { + H5O_loc_t ext_loc; /* "Object location" for superblock extension */ + + /* Open the superblock extension's object header */ + if(H5F_super_ext_open(f, sblock->ext_addr, &ext_loc) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTOPENOBJ, FAIL, "unable to open file's superblock extension") + /* Check for ignoring the driver info for this file */ if(!H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) { /* Check for driver info message */ H5_ASSIGN_OVERFLOW(driver_size, H5FD_sb_size(f->shared->lf), hsize_t, size_t); if(driver_size > 0) { H5O_drvinfo_t drvinfo; /* Driver info */ - H5O_loc_t ext_loc; /* "Object location" for superblock extension */ uint8_t dbuf[H5F_MAX_DRVINFOBLOCK_SIZE]; /* Driver info block encoding buffer */ /* Sanity check */ @@ -783,21 +811,19 @@ H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr, if(H5FD_sb_encode(f->shared->lf, drvinfo.name, dbuf) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to encode driver information") - /* Open the superblock extension's object header */ - if(H5F_super_ext_open(f, sblock->ext_addr, &ext_loc) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTOPENOBJ, FAIL, "unable to open file's superblock extension") - /* Write driver info information to the superblock extension */ drvinfo.len = driver_size; drvinfo.buf = dbuf; if(H5O_msg_write(&ext_loc, H5O_DRVINFO_ID, H5O_MSG_FLAG_DONTSHARE, H5O_UPDATE_TIME, &drvinfo, dxpl_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "unable to update driver info header message") - /* Close the superblock extension object header */ - if(H5F_super_ext_close(f, &ext_loc, dxpl_id, FALSE) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close file's superblock extension") } /* end if */ + } /* end if */ + + /* Close the superblock extension object header */ + if(H5F_super_ext_close(f, &ext_loc, dxpl_id, FALSE) < 0) + HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close file's superblock extension") } /* end if */ /* Reset the dirty flag. */ @@ -439,14 +439,8 @@ H5HF_get_obj_len(H5HF_t *fh, hid_t dxpl_id, const void *_id, size_t *obj_len_p) /* Check type of object in heap */ if((id_flags & H5HF_ID_TYPE_MASK) == H5HF_ID_TYPE_MAN) { - /* Skip over the flag byte */ - id++; - - /* Skip over object offset */ - id += fh->hdr->heap_off_size; - - /* Retrieve the entry length */ - UINT64DECODE_VAR(id, *obj_len_p, fh->hdr->heap_len_size); + if(H5HF_man_get_obj_len(fh->hdr, id, obj_len_p) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "can't get 'managed' object's length") } /* end if */ else if((id_flags & H5HF_ID_TYPE_MASK) == H5HF_ID_TYPE_HUGE) { if(H5HF_huge_get_obj_len(fh->hdr, dxpl_id, id, obj_len_p) < 0) @@ -457,8 +451,8 @@ H5HF_get_obj_len(H5HF_t *fh, hid_t dxpl_id, const void *_id, size_t *obj_len_p) HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "can't get 'tiny' object's length") } /* end if */ else { -HDfprintf(stderr, "%s: Heap ID type not supported yet!\n", FUNC); -HGOTO_ERROR(H5E_HEAP, H5E_UNSUPPORTED, FAIL, "heap ID type not supported yet") + HDfprintf(stderr, "%s: Heap ID type not supported yet!\n", FUNC); + HGOTO_ERROR(H5E_HEAP, H5E_UNSUPPORTED, FAIL, "heap ID type not supported yet") } /* end else */ done: diff --git a/src/H5HFman.c b/src/H5HFman.c index 62f5580..58e3318 100644 --- a/src/H5HFman.c +++ b/src/H5HFman.c @@ -218,6 +218,44 @@ done: /*------------------------------------------------------------------------- + * Function: H5HF_man_get_obj_len + * + * Purpose: Get the size of a managed heap object + * + * Return: SUCCEED (Can't fail) + * + * Programmer: Dana Robinson (derobins@hdfgroup.org) + * August 2012 + * + *------------------------------------------------------------------------- + */ +herr_t +H5HF_man_get_obj_len(H5HF_hdr_t *hdr, const uint8_t *id, size_t *obj_len_p) +{ + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* + * Check arguments. + */ + HDassert(hdr); + HDassert(id); + HDassert(obj_len_p); + + /* Skip over the flag byte */ + id++; + + /* Skip over object offset */ + id += hdr->heap_off_size; + + /* Retrieve the entry length */ + UINT64DECODE_VAR(id, *obj_len_p, hdr->heap_len_size); + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5HF_man_get_obj_len() */ + + +/*------------------------------------------------------------------------- * Function: H5HF_man_op_real * * Purpose: Internal routine to perform an operation on a managed heap diff --git a/src/H5HFpkg.h b/src/H5HFpkg.h index 498c45e..e0deca7 100644 --- a/src/H5HFpkg.h +++ b/src/H5HFpkg.h @@ -662,6 +662,8 @@ H5_DLL herr_t H5HF_man_dblock_dest(H5HF_direct_t *dblock); /* Managed object routines */ H5_DLL herr_t H5HF_man_insert(H5HF_hdr_t *fh, hid_t dxpl_id, size_t obj_size, const void *obj, void *id); +H5_DLL herr_t H5HF_man_get_obj_len(H5HF_hdr_t *hdr, const uint8_t *id, + size_t *obj_len_p); H5_DLL herr_t H5HF_man_read(H5HF_hdr_t *fh, hid_t dxpl_id, const uint8_t *id, void *obj); H5_DLL herr_t H5HF_man_write(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id, diff --git a/src/H5HFsection.c b/src/H5HFsection.c index e9ea7e0..72ea100 100644 --- a/src/H5HFsection.c +++ b/src/H5HFsection.c @@ -2398,7 +2398,10 @@ H5HF_sect_indirect_init_rows(H5HF_hdr_t *hdr, hid_t dxpl_id, HDassert(sect->u.indirect.span_size > 0); /* Reset reference count for indirect section */ + /* (Also reset the direct & indirect row pointers */ sect->u.indirect.rc = 0; + sect->u.indirect.dir_rows = NULL; + sect->u.indirect.indir_ents = NULL; /* Set up direct block information, if necessary */ if(start_row < hdr->man_dtable.max_direct_rows) { @@ -2424,7 +2427,6 @@ H5HF_sect_indirect_init_rows(H5HF_hdr_t *hdr, hid_t dxpl_id, /* No rows of direct blocks covered, reset direct row information */ dir_nrows = 0; sect->u.indirect.dir_nrows = 0; - sect->u.indirect.dir_rows = NULL; } /* end else */ /* Set up indirect block information, if necessary */ @@ -2459,7 +2461,6 @@ H5HF_sect_indirect_init_rows(H5HF_hdr_t *hdr, hid_t dxpl_id, else { /* No indirect block entries covered, reset indirect row information */ sect->u.indirect.indir_nents = 0; - sect->u.indirect.indir_ents = NULL; } /* end else */ /* Set up initial row information */ @@ -2598,6 +2599,13 @@ H5HF_sect_indirect_init_rows(H5HF_hdr_t *hdr, hid_t dxpl_id, (sect->u.indirect.indir_nents + sect->u.indirect.dir_nrows)); done: + if(ret_value < 0) { + if(sect->u.indirect.indir_ents) + H5MM_xfree(sect->u.indirect.indir_ents); + if(sect->u.indirect.dir_rows) + H5MM_xfree(sect->u.indirect.dir_rows); + } /* end if */ + FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_sect_indirect_init_rows() */ diff --git a/src/H5HFtiny.c b/src/H5HFtiny.c index a4cbdc1..27ab443 100644 --- a/src/H5HFtiny.c +++ b/src/H5HFtiny.c @@ -15,11 +15,11 @@ /*------------------------------------------------------------------------- * - * Created: H5HFtiny.c - * Aug 14 2006 - * Quincey Koziol <koziol@hdfgroup.org> + * Created: H5HFtiny.c + * Aug 14 2006 + * Quincey Koziol <koziol@hdfgroup.org> * - * Purpose: Routines for "tiny" objects in fractal heap + * Purpose: Routines for "tiny" objects in fractal heap * *------------------------------------------------------------------------- */ @@ -28,15 +28,15 @@ /* Module Setup */ /****************/ -#define H5HF_PACKAGE /*suppress error about including H5HFpkg */ +#define H5HF_PACKAGE /* suppress error about including H5HFpkg */ /***********/ /* Headers */ /***********/ -#include "H5private.h" /* Generic Functions */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5HFpkg.h" /* Fractal heaps */ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5HFpkg.h" /* Fractal heaps */ /****************/ @@ -44,11 +44,11 @@ /****************/ /* Tiny object length information */ -#define H5HF_TINY_LEN_SHORT 16 /* Max. length able to be encoded in first heap ID byte */ -#define H5HF_TINY_MASK_SHORT 0x0F /* Mask for length in first heap ID byte */ -#define H5HF_TINY_MASK_EXT 0x0FFF /* Mask for length in two heap ID bytes */ -#define H5HF_TINY_MASK_EXT_1 0x0F00 /* Mask for length in first byte of two heap ID bytes */ -#define H5HF_TINY_MASK_EXT_2 0x00FF /* Mask for length in second byte of two heap ID bytes */ +#define H5HF_TINY_LEN_SHORT 16 /* Max. length able to be encoded in first heap ID byte */ +#define H5HF_TINY_MASK_SHORT 0x0F /* Mask for length in first heap ID byte */ +#define H5HF_TINY_MASK_EXT 0x0FFF /* Mask for length in two heap ID bytes */ +#define H5HF_TINY_MASK_EXT_1 0x0F00 /* Mask for length in first byte of two heap ID bytes */ +#define H5HF_TINY_MASK_EXT_2 0x00FF /* Mask for length in second byte of two heap ID bytes */ /******************/ @@ -84,15 +84,15 @@ static herr_t H5HF_tiny_op_real(H5HF_hdr_t *hdr, const uint8_t *id, /*------------------------------------------------------------------------- - * Function: H5HF_tiny_init + * Function: H5HF_tiny_init * - * Purpose: Initialize information for tracking 'tiny' objects + * Purpose: Initialize information for tracking 'tiny' objects * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 14 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 14 2006 * *------------------------------------------------------------------------- */ @@ -131,15 +131,15 @@ H5HF_tiny_init(H5HF_hdr_t *hdr) /*------------------------------------------------------------------------- - * Function: H5HF_tiny_insert + * Function: H5HF_tiny_insert * - * Purpose: Pack a 'tiny' object in a heap ID + * Purpose: Pack a 'tiny' object in a heap ID * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 14 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 14 2006 * *------------------------------------------------------------------------- */ @@ -196,15 +196,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5HF_tiny_get_obj_len + * Function: H5HF_tiny_get_obj_len * - * Purpose: Get the size of a 'tiny' object in a fractal heap + * Purpose: Get the size of a 'tiny' object in a fractal heap * - * Return: SUCCEED/FAIL + * Return: SUCCEED (Can't fail) * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 14 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 14 2006 * *------------------------------------------------------------------------- */ @@ -226,9 +226,9 @@ H5HF_tiny_get_obj_len(H5HF_hdr_t *hdr, const uint8_t *id, size_t *obj_len_p) if(!hdr->tiny_len_extended) enc_obj_size = *id & H5HF_TINY_MASK_SHORT; else - /* (performed in this odd way to avoid compiler bug on tg-login3 with - * gcc 3.2.2 - QAK) - */ + /* (performed in this odd way to avoid compiler bug on tg-login3 with + * gcc 3.2.2 - QAK) + */ enc_obj_size = *(id + 1) | ((*id & H5HF_TINY_MASK_EXT_1) << 8); /* Set the object's length */ @@ -239,15 +239,15 @@ H5HF_tiny_get_obj_len(H5HF_hdr_t *hdr, const uint8_t *id, size_t *obj_len_p) /*------------------------------------------------------------------------- - * Function: H5HF_tiny_op_real + * Function: H5HF_tiny_op_real * - * Purpose: Internal routine to perform operation on 'tiny' object + * Purpose: Internal routine to perform operation on 'tiny' object * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Sep 11 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Sep 11 2006 * *------------------------------------------------------------------------- */ @@ -266,31 +266,23 @@ H5HF_tiny_op_real(H5HF_hdr_t *hdr, const uint8_t *id, H5HF_operator_t op, HDassert(hdr); HDassert(id); HDassert(op); - - /* Check if 'tiny' object ID is in extended form */ - if(!hdr->tiny_len_extended) { - /* Retrieve the object's encoded length */ - enc_obj_size = *id & H5HF_TINY_MASK_SHORT; - - /* Advance past flag byte(s) */ + + /* Get the object's encoded length */ + /* H5HF_tiny_obj_len can't fail */ + ret_value = H5HF_tiny_get_obj_len(hdr, id, &enc_obj_size); + + /* Advance past flag byte(s) */ + if(!hdr->tiny_len_extended) id++; - } /* end if */ else { - /* Retrieve the object's encoded length */ - /* (performed in this odd way to avoid compiler bug on tg-login3 with - * gcc 3.2.2 - QAK) - */ - enc_obj_size = *(id + 1) | ((*id & H5HF_TINY_MASK_EXT_1) << 8); - - /* Advance past flag byte(s) */ - /* (performed in two steps to avoid compiler bug on tg-login3 with - * gcc 3.2.2 - QAK) - */ + /* (performed in two steps to avoid compiler bug on tg-login3 with + * gcc 3.2.2 - QAK) + */ id++; id++; - } /* end else */ + } /* Call the user's 'op' callback */ - if(op(id, (enc_obj_size + 1), op_data) < 0) + if(op(id, enc_obj_size, op_data) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTOPERATE, FAIL, "application's callback failed") done: @@ -299,15 +291,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5HF_tiny_read + * Function: H5HF_tiny_read * - * Purpose: Read a 'tiny' object from the heap + * Purpose: Read a 'tiny' object from the heap * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 8 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 8 2006 * *------------------------------------------------------------------------- */ @@ -335,15 +327,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5HF_tiny_op + * Function: H5HF_tiny_op * - * Purpose: Operate directly on a 'tiny' object + * Purpose: Operate directly on a 'tiny' object * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@ncsa.uiuc.edu - * Sept 11 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Sept 11 2006 * *------------------------------------------------------------------------- */ @@ -372,15 +364,15 @@ done: /*------------------------------------------------------------------------- - * Function: H5HF_tiny_remove + * Function: H5HF_tiny_remove * - * Purpose: Remove a 'tiny' object from the heap statistics + * Purpose: Remove a 'tiny' object from the heap statistics * - * Return: SUCCEED/FAIL + * Return: SUCCEED/FAIL * - * Programmer: Quincey Koziol - * koziol@hdfgroup.org - * Aug 14 2006 + * Programmer: Quincey Koziol + * koziol@hdfgroup.org + * Aug 14 2006 * *------------------------------------------------------------------------- */ @@ -398,17 +390,12 @@ H5HF_tiny_remove(H5HF_hdr_t *hdr, const uint8_t *id) HDassert(hdr); HDassert(id); - /* Check if 'tiny' object ID is in extended form */ - if(!hdr->tiny_len_extended) - enc_obj_size = *id & H5HF_TINY_MASK_SHORT; - else - /* (performed in this odd way to avoid compiler bug on tg-login3 with - * gcc 3.2.2 - QAK) - */ - enc_obj_size = *(id + 1) | ((*id & H5HF_TINY_MASK_EXT_1) << 8); + /* Get the object's encoded length */ + /* H5HF_tiny_obj_len can't fail */ + ret_value = H5HF_tiny_get_obj_len(hdr, id, &enc_obj_size); /* Update statistics about heap */ - hdr->tiny_size -= (enc_obj_size + 1); + hdr->tiny_size -= enc_obj_size; hdr->tiny_nobjs--; /* Mark heap header as modified */ @@ -418,4 +405,3 @@ H5HF_tiny_remove(H5HF_hdr_t *hdr, const uint8_t *id) done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5HF_tiny_remove() */ - @@ -136,7 +136,7 @@ H5HG_create(H5F_t *f, hid_t dxpl_id, size_t size) { H5HG_heap_t *heap = NULL; uint8_t *p = NULL; - haddr_t addr; + haddr_t addr = HADDR_UNDEF; size_t n; haddr_t ret_value = HADDR_UNDEF; /* Return value */ @@ -245,6 +245,7 @@ H5MF_alloc_open(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type) */ HDassert(f); HDassert(f->shared); + HDassert(type != H5FD_MEM_NOLIST); HDassert(H5F_addr_defined(f->shared->fs_addr[type])); HDassert(f->shared->fs_state[type] == H5F_FS_STATE_CLOSED); @@ -292,6 +293,7 @@ H5MF_alloc_create(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type) */ HDassert(f); HDassert(f->shared); + HDassert(type != H5FD_MEM_NOLIST); HDassert(!H5F_addr_defined(f->shared->fs_addr[type])); HDassert(f->shared->fs_state[type] == H5F_FS_STATE_CLOSED); @@ -342,6 +344,7 @@ H5MF_alloc_start(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type) */ HDassert(f); HDassert(f->shared); + HDassert(type != H5FD_MEM_NOLIST); /* Check if the free space manager exists already */ if(H5F_addr_defined(f->shared->fs_addr[type])) { @@ -384,6 +387,7 @@ H5MF_alloc_close(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type) */ HDassert(f); HDassert(f->shared); + HDassert(type != H5FD_MEM_NOLIST); HDassert(f->shared->fs_man[type]); HDassert(f->shared->fs_state[type] != H5F_FS_STATE_CLOSED); @@ -483,6 +487,7 @@ HDfprintf(stderr, "%s: Check 1.6, freeing node\n", FUNC); udata.dxpl_id = dxpl_id; udata.alloc_type = alloc_type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; #ifdef H5MF_ALLOC_DEBUG_MORE HDfprintf(stderr, "%s: Check 1.7, re-adding node, node->sect_info.size = %Hu\n", FUNC, node->sect_info.size); @@ -688,6 +693,7 @@ HDfprintf(stderr, "%s: dropping addr = %a, size = %Hu, on the floor!\n", FUNC, a udata.dxpl_id = dxpl_id; udata.alloc_type = alloc_type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* If size of section freed is larger than threshold, add it to the free space manager */ if(size >= f->shared->fs_threshold) { @@ -819,6 +825,11 @@ H5MF_sects_dump(f, dxpl_id, stderr); * Programmer: Quincey Koziol * Monday, October 6, 2003 * + * Modifications: + * Vailin Choi; July 2012 + * As the default free-list mapping is changed to H5FD_FLMAP_DICHOTOMY, + * checks are added to account for the last section of each free-space manager + * and the remaining space in the two aggregators are at EOF. *------------------------------------------------------------------------- */ herr_t @@ -832,6 +843,8 @@ H5MF_get_freespace(H5F_t *f, hid_t dxpl_id, hsize_t *tot_space, hsize_t *meta_si hsize_t tot_fs_size = 0; /* Amount of all free space managed */ hsize_t tot_meta_size = 0; /* Amount of metadata for free space managers */ H5FD_mem_t type; /* Memory type for iteration */ + H5FD_mem_t fs_started[H5FD_MEM_NTYPES]; /* Indicate whether the free-space manager has been started */ + hbool_t eoa_shrank; /* Whether an EOA shrink occurs */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -855,14 +868,15 @@ H5MF_get_freespace(H5F_t *f, hid_t dxpl_id, hsize_t *tot_space, hsize_t *meta_si /* Iterate over all the free space types that have managers and get each free list's space */ for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { - hbool_t fs_started = FALSE; + + fs_started[type] = FALSE; /* Check if the free space for the file has been initialized */ if(!f->shared->fs_man[type] && H5F_addr_defined(f->shared->fs_addr[type])) { if(H5MF_alloc_open(f, dxpl_id, type) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't initialize file free space") HDassert(f->shared->fs_man[type]); - fs_started = TRUE; + fs_started[type] = TRUE; } /* end if */ /* Check if there's free space of this type */ @@ -880,32 +894,54 @@ H5MF_get_freespace(H5F_t *f, hid_t dxpl_id, hsize_t *tot_space, hsize_t *meta_si tot_fs_size += type_fs_size; tot_meta_size += type_meta_size; } /* end if */ + } /* end for */ - /* Close the free space manager, if we opened it here */ - if(fs_started) + /* Iterate until no more EOA shrink occurs */ + do { + eoa_shrank = FALSE; + + /* Check the last section of each free-space manager */ + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + haddr_t sect_addr = HADDR_UNDEF; + hsize_t sect_size = 0; + + if(f->shared->fs_man[type]) { + if(H5FS_sect_query_last_sect(f->shared->fs_man[type], §_addr, §_size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query last section on merge list") + + /* Deduct space from previous accumulation if the section is at EOA */ + if(H5F_addr_eq(sect_addr + sect_size, eoa)) { + eoa = sect_addr; + eoa_shrank = TRUE; + tot_fs_size -= sect_size; + } /* end if */ + } /* end if */ + } /* end for */ + + /* Check the metadata and raw data aggregators */ + if(ma_size > 0 && H5F_addr_eq(ma_addr + ma_size, eoa)) { + eoa = ma_addr; + eoa_shrank = TRUE; + ma_size = 0; + } /* end if */ + if(sda_size > 0 && H5F_addr_eq(sda_addr + sda_size, eoa)) { + eoa = sda_addr; + eoa_shrank = TRUE; + sda_size = 0; + } /* end if */ + } while(eoa_shrank); + + /* Close the free-space managers if they were opened earlier in this routine */ + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + if(fs_started[type]) if(H5MF_alloc_close(f, dxpl_id, type) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTINIT, FAIL, "can't close file free space") } /* end for */ - /* Check for aggregating metadata allocations */ - if(ma_size > 0) { - /* Add in the reserved space for metadata to the available free space */ - /* (if it's not at the tail of the file) */ - if(H5F_addr_ne(ma_addr + ma_size, eoa)) - tot_fs_size += ma_size; - } /* end if */ - - /* Check for aggregating small data allocations */ - if(sda_size > 0) { - /* Add in the reserved space for metadata to the available free space */ - /* (if it's not at the tail of the file) */ - if(H5F_addr_ne(sda_addr + sda_size, eoa)) - tot_fs_size += sda_size; - } /* end if */ - /* Set the value(s) to return */ + /* (The metadata & small data aggregators count as free space now, since they aren't at EOA) */ if(tot_space) - *tot_space = tot_fs_size; + *tot_space = tot_fs_size + ma_size + sda_size; if(meta_size) *meta_size = tot_meta_size; @@ -957,6 +993,7 @@ HDfprintf(stderr, "%s: Entering - alloc_type = %u, addr = %a, size = %Hu\n", FUN udata.dxpl_id = dxpl_id; udata.alloc_type = alloc_type; udata.allow_sect_absorb = FALSE; /* Force section to be absorbed into aggregator */ + udata.allow_eoa_shrink_only = FALSE; /* Call the "can shrink" callback for the section */ if((ret_value = H5MF_sect_simple_can_shrink((const H5FS_section_info_t *)node, &udata)) < 0) @@ -980,6 +1017,66 @@ HDfprintf(stderr, "%s: Leaving, ret_value = %d\n", FUNC, ret_value); /*------------------------------------------------------------------------- + * Function: H5MF_close_shrink_eoa + * + * Purpose: Shrink the EOA while closing + * + * Return: SUCCEED/FAIL + * + * Programmer: Quincey Koziol + * Saturday, July 7, 2012 + * + *------------------------------------------------------------------------- + */ +static herr_t +H5MF_close_shrink_eoa(H5F_t *f, hid_t dxpl_id) +{ + H5FD_mem_t type; /* Memory type for iteration */ + hbool_t eoa_shrank; /* Whether an EOA shrink occurs */ + htri_t status; /* Status value */ + H5MF_sect_ud_t udata; /* User data for callback */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT + + /* check args */ + HDassert(f); + HDassert(f->shared); + + /* Construct user data for callbacks */ + udata.f = f; + udata.dxpl_id = dxpl_id; + udata.allow_sect_absorb = FALSE; + udata.allow_eoa_shrink_only = TRUE; + + /* Iterate until no more EOA shrinking occurs */ + do { + eoa_shrank = FALSE; + + /* Check the last section of each free-space manager */ + for(type = H5FD_MEM_DEFAULT; type < H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t, type)) { + if(f->shared->fs_man[type]) { + udata.alloc_type = type; + if((status = H5FS_sect_try_shrink_eoa(f, dxpl_id, f->shared->fs_man[type], &udata)) < 0) + HGOTO_ERROR(H5E_FSPACE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + else if(status > 0) + eoa_shrank = TRUE; + } /* end if */ + } /* end for */ + + /* check the two aggregators */ + if((status = H5MF_aggrs_try_shrink_eoa(f, dxpl_id)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + else if(status > 0) + eoa_shrank = TRUE; + } while(eoa_shrank); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5MF_close_shrink_eoa() */ + + +/*------------------------------------------------------------------------- * Function: H5MF_close * * Purpose: Close the free space tracker(s) for a file @@ -989,6 +1086,12 @@ HDfprintf(stderr, "%s: Leaving, ret_value = %d\n", FUNC, ret_value); * Programmer: Quincey Koziol * Tuesday, January 22, 2008 * + * Modifications: + * Vailin Choi; July 2012 + * As the default free-list mapping is changed to H5FD_FLMAP_DICHOTOMY, + * modifications are needed to shrink EOA if the last section of each free-space manager + * and the remaining space in the two aggregators are at EOA. + *------------------------------------------------------------------------- */ herr_t @@ -1013,6 +1116,10 @@ HDfprintf(stderr, "%s: Entering\n", FUNC); if(H5MF_free_aggrs(f, dxpl_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "can't free aggregators") + /* Trying shrinking the EOA for the file */ + if(H5MF_close_shrink_eoa(f, dxpl_id) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't shrink eoa") + /* Making free-space managers persistent for superblock version >= 2 */ if(f->shared->sblock->super_vers >= HDF5_SUPERBLOCK_VERSION_2 && f->shared->fs_strategy == H5F_FILE_SPACE_ALL_PERSIST) { @@ -1160,6 +1267,11 @@ HDfprintf(stderr, "%s: Before deleting free space manager\n", FUNC); if(H5MF_free_aggrs(f, dxpl_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "can't free aggregators") + /* Trying shrinking the EOA for the file */ + /* (in case any free space is now at the EOA) */ + if(H5MF_close_shrink_eoa(f, dxpl_id) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't shrink eoa") + done: #ifdef H5MF_ALLOC_DEBUG HDfprintf(stderr, "%s: Leaving\n", FUNC); diff --git a/src/H5MFaggr.c b/src/H5MFaggr.c index 6f68fd7..f015b19 100644 --- a/src/H5MFaggr.c +++ b/src/H5MFaggr.c @@ -57,6 +57,8 @@ /********************/ /* Local Prototypes */ /********************/ +static herr_t H5MF_aggr_free(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, + H5F_blk_aggr_t *aggr); /*********************/ @@ -231,15 +233,14 @@ HDfprintf(stderr, "%s: aggr = {%a, %Hu, %Hu}\n", FUNC, aggr->addr, aggr->tot_siz if(H5F_addr_gt((eoa + size), f->shared->tmp_addr)) HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space") + /* Release "other" aggregator, if it exists, is at the end of the allocated space, + * has allocated more than one block and the unallocated space is greater than its + * allocation block size. + */ if ((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && - ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { - - if(H5FD_free(f->shared->lf, dxpl_id, other_alloc_type, f, other_aggr->addr, other_aggr->size) < 0) + (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { + if(H5MF_aggr_free(f, dxpl_id, other_alloc_type, other_aggr) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation block") - - other_aggr->addr = 0; - other_aggr->tot_size = 0; - other_aggr->size = 0; } /* end if */ /* Allocate space from the VFD (i.e. at the end of the file) */ @@ -275,14 +276,14 @@ HDfprintf(stderr, "%s: Allocating block\n", FUNC); if(H5F_addr_gt((eoa + aggr->alloc_size), f->shared->tmp_addr)) HGOTO_ERROR(H5E_RESOURCE, H5E_BADRANGE, HADDR_UNDEF, "'normal' file space allocation request will overlap into 'temporary' file space") + /* Release "other" aggregator, if it exists, is at the end of the allocated space, + * has allocated more than one block and the unallocated space is greater than its + * allocation block size. + */ if((other_aggr->size > 0) && (H5F_addr_eq((other_aggr->addr + other_aggr->size), eoa)) && - ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { - - if(H5FD_free(f->shared->lf, dxpl_id, other_alloc_type, f, other_aggr->addr, other_aggr->size) < 0) + (other_aggr->tot_size > other_aggr->size) && ((other_aggr->tot_size - other_aggr->size) >= other_aggr->alloc_size)) { + if(H5MF_aggr_free(f, dxpl_id, other_alloc_type, other_aggr) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, HADDR_UNDEF, "can't free aggregation block") - other_aggr->addr = 0; - other_aggr->tot_size = 0; - other_aggr->size = 0; } /* end if */ /* Allocate space from the VFD (i.e. at the end of the file) */ @@ -633,8 +634,10 @@ H5MF_aggr_query(const H5F_t *f, const H5F_blk_aggr_t *aggr, haddr_t *addr, /* Check if this aggregator is active */ if(f->shared->feature_flags & aggr->feature_flag) { - *addr = aggr->addr; - *size = aggr->size; + if(addr) + *addr = aggr->addr; + if(size) + *size = aggr->size; } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) @@ -766,3 +769,131 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5MF_free_aggrs() */ + +/*------------------------------------------------------------------------- + * Function: H5MF_aggr_can_shrink_eoa + * + * Purpose: Check if the remaining space in the aggregator is at EOA + * + * Return: Success: non-negative (TRUE/FALSE) + * Failure: negative + * + * Programmer: Vailin Choi + * + *------------------------------------------------------------------------- + */ +static htri_t +H5MF_aggr_can_shrink_eoa(H5F_t *f, H5FD_mem_t type, H5F_blk_aggr_t *aggr) +{ + haddr_t eoa = HADDR_UNDEF; /* EOA for the file */ + htri_t ret_value = FALSE; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity check */ + HDassert(f); + HDassert(aggr); + HDassert(aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA || aggr->feature_flag == H5FD_FEAT_AGGREGATE_SMALLDATA); + + /* Get the EOA for the file */ + if(HADDR_UNDEF == (eoa = H5F_get_eoa(f, type))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "Unable to get eoa") + + /* Check if the aggregator is at EOA */ + if(aggr->size > 0 && H5F_addr_defined(aggr->addr)) + ret_value = H5F_addr_eq(eoa, aggr->addr + aggr->size); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5MF_aggr_can_shrink_eoa() */ + + +/*------------------------------------------------------------------------- + * Function: H5MF_aggr_free + * + * Purpose: Free the aggregator's space in the file. + * + * Note: Does _not_ put the space on a free list + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Vailin Choi + * + *------------------------------------------------------------------------- + */ +static herr_t +H5MF_aggr_free(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type, H5F_blk_aggr_t *aggr) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Sanity check */ + HDassert(f); + HDassert(f->shared->lf); + HDassert(aggr); + HDassert(H5F_addr_defined(aggr->addr)); + HDassert(aggr->size > 0); + HDassert(H5F_INTENT(f) & H5F_ACC_RDWR); + HDassert(aggr->feature_flag == H5FD_FEAT_AGGREGATE_METADATA || aggr->feature_flag == H5FD_FEAT_AGGREGATE_SMALLDATA); + HDassert(f->shared->feature_flags & aggr->feature_flag); + + /* Free the remaining space at EOA in the aggregator */ + if(H5FD_free(f->shared->lf, dxpl_id, type, f, aggr->addr, aggr->size) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "can't free aggregation block") + + /* Reset the aggregator */ + aggr->tot_size = 0; + aggr->addr = HADDR_UNDEF; + aggr->size = 0; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* H5MF_aggr_free() */ + + +/*------------------------------------------------------------------------- + * Function: H5MF_aggrs_try_shrink_eoa + * + * Purpose: Check the metadata & small block aggregators to see if + * EOA shrink is possible; if so, shrink each aggregator + * + * Return: Success: Non-negative + * Failure: Negative + * + * Programmer: Vailin Choi + * + *------------------------------------------------------------------------- + */ +htri_t +H5MF_aggrs_try_shrink_eoa(H5F_t *f, hid_t dxpl_id) +{ + htri_t ma_status; /* Whether the metadata aggregator can shrink the EOA */ + htri_t sda_status; /* Whether the small data aggregator can shrink the EOA */ + htri_t ret_value; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + /* Check args */ + HDassert(f); + HDassert(f->shared); + + if((ma_status = H5MF_aggr_can_shrink_eoa(f, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr))) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query metadata aggregator stats") + if(ma_status > 0) + if(H5MF_aggr_free(f, dxpl_id, H5FD_MEM_DEFAULT, &(f->shared->meta_aggr)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + + if((sda_status = H5MF_aggr_can_shrink_eoa(f, H5FD_MEM_DRAW, &(f->shared->sdata_aggr))) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTGET, FAIL, "can't query small data aggregator stats") + if(sda_status > 0) + if(H5MF_aggr_free(f, dxpl_id, H5FD_MEM_DRAW, &(f->shared->sdata_aggr)) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTSHRINK, FAIL, "can't check for shrinking eoa") + + ret_value = (ma_status || sda_status); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5MF_aggrs_try_shrink_eoa() */ + diff --git a/src/H5MFpkg.h b/src/H5MFpkg.h index 25785ae..2071a0a 100644 --- a/src/H5MFpkg.h +++ b/src/H5MFpkg.h @@ -122,6 +122,7 @@ typedef struct H5MF_sect_ud_t { hid_t dxpl_id; /* DXPL for VFD operations */ H5FD_mem_t alloc_type; /* Type of memory being allocated */ hbool_t allow_sect_absorb; /* Whether sections are allowed to absorb a block aggregator */ + hbool_t allow_eoa_shrink_only; /* Whether shrinking eoa is allowed only for the section */ /* Up */ H5MF_shrink_type_t shrink; /* Type of shrink operation to perform */ diff --git a/src/H5MFprivate.h b/src/H5MFprivate.h index b471aa3..ad5e385 100644 --- a/src/H5MFprivate.h +++ b/src/H5MFprivate.h @@ -81,6 +81,7 @@ H5_DLL haddr_t H5MF_alloc_tmp(H5F_t *f, hsize_t size); /* 'block aggregator' routines */ H5_DLL herr_t H5MF_free_aggrs(H5F_t *f, hid_t dxpl_id); +H5_DLL htri_t H5MF_aggrs_try_shrink_eoa(H5F_t *f, hid_t dxpl_id); /* Debugging routines */ #ifdef H5MF_DEBUGGING diff --git a/src/H5MFsection.c b/src/H5MFsection.c index 89b2219..0572def 100644 --- a/src/H5MFsection.c +++ b/src/H5MFsection.c @@ -328,6 +328,10 @@ HDfprintf(stderr, "%s: section {%a, %Hu}, shrinks file, eoa = %a\n", FUNC, sect- HGOTO_DONE(TRUE) } /* end if */ else { + /* Shrinking can't occur if the 'eoa_shrink_only' flag is set and we're not shrinking the EOA */ + if(udata->allow_eoa_shrink_only) + HGOTO_DONE(FALSE) + /* Check if this section is allowed to merge with metadata aggregation block */ if(udata->f->shared->fs_aggr_merge[udata->alloc_type] & H5F_FS_MERGE_METADATA) { htri_t status; /* Status from aggregator adjoin */ diff --git a/src/H5Ocopy.c b/src/H5Ocopy.c index 1d1aa90..f643842 100644 --- a/src/H5Ocopy.c +++ b/src/H5Ocopy.c @@ -1066,11 +1066,15 @@ H5O_copy_header(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */, FUNC_ENTER_NOAPI_NOINIT + /* Sanity check */ HDassert(oloc_src); HDassert(oloc_src->file); HDassert(H5F_addr_defined(oloc_src->addr)); HDassert(oloc_dst->file); + /* Intialize copy info before errors can be thrown */ + HDmemset(&cpy_info, 0, sizeof(H5O_copy_t)); + /* Get the copy property list */ if(NULL == (ocpy_plist = (H5P_genplist_t *)H5I_object(ocpypl_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") @@ -1088,7 +1092,6 @@ H5O_copy_header(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */, HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get callback info") /* Convert copy flags into copy struct */ - HDmemset(&cpy_info, 0, sizeof(H5O_copy_t)); if((cpy_option & H5O_COPY_SHALLOW_HIERARCHY_FLAG) > 0) { cpy_info.copy_shallow = TRUE; cpy_info.max_depth = 1; @@ -1562,6 +1565,10 @@ done: * Programmer: Neil Fortner * Nov 3 2011 * + * Modifications: + * Vailin Choi; August 2012 + * Use H5O_obj_class to get object type instead of + * H5O_get_info(...TRUE....) saving time in traversing metadata. *------------------------------------------------------------------------- */ static herr_t @@ -1571,8 +1578,8 @@ H5O_copy_search_comm_dt_check(H5O_loc_t *obj_oloc, H5O_copy_search_comm_dt_key_t *key = NULL; /* Skiplist key */ haddr_t *addr = NULL; /* Destination address */ hbool_t obj_inserted = FALSE; /* Object inserted into skip list */ - H5O_info_t oinfo; /* Object info */ H5A_attr_iter_op_t attr_op; /* Attribute iteration operator */ + const H5O_obj_class_t *obj_class = NULL; /* Type of object */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT @@ -1583,13 +1590,13 @@ H5O_copy_search_comm_dt_check(H5O_loc_t *obj_oloc, HDassert(udata->dst_dt_list); HDassert(udata->dst_root_loc); - /* Get the object's info */ - if(H5O_get_info(obj_oloc, udata->dxpl_id, TRUE, &oinfo) < 0) - HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to get object info") + /* Get pointer to object class for this object */ + if((obj_class = H5O_obj_class(obj_oloc, udata->dxpl_id)) == NULL) + HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type") /* Check if the object is a datatype, a dataset using a committed * datatype, or contains an attribute using a committed datatype */ - if(oinfo.type == H5O_TYPE_NAMED_DATATYPE) { + if(obj_class->type == H5O_TYPE_NAMED_DATATYPE) { /* Allocate key */ if(NULL == (key = H5FL_MALLOC(H5O_copy_search_comm_dt_key_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") @@ -1614,7 +1621,7 @@ H5O_copy_search_comm_dt_check(H5O_loc_t *obj_oloc, obj_inserted = TRUE; } /* end if */ } /* end if */ - else if(oinfo.type == H5O_TYPE_DATASET) { + else if(obj_class->type == H5O_TYPE_DATASET) { /* Allocate key */ if(NULL == (key = H5FL_MALLOC(H5O_copy_search_comm_dt_key_t))) HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed") diff --git a/src/H5Otest.c b/src/H5Otest.c index 705f716..d1627ef 100644 --- a/src/H5Otest.c +++ b/src/H5Otest.c @@ -516,7 +516,7 @@ H5O_expunge_chunks_test(const H5O_loc_t *loc, hid_t dxpl_id) /* Safety check */ nchunks = oh->nchunks; - HDassert(nchunks < NELMTS(chk_addr)); + HDassert(0 < nchunks && nchunks < NELMTS(chk_addr)); /* Iterate over all the chunks, saving the chunk addresses */ for(u = 0; u < oh->nchunks; u++) @@ -118,7 +118,7 @@ H5P_init_pub_interface(void) hid_t H5Pcopy(hid_t id) { - void *obj; /* Property object to copy */ + void *obj; /* Property object to copy */ hid_t ret_value=FALSE; /* return value */ FUNC_ENTER_API(FAIL) @@ -224,7 +224,7 @@ H5Pcreate_class(hid_t parent, const char *name, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't retrieve parent class") /* Create the new property list class */ - if(NULL == (pclass = H5P_create_class(par_class, name, FALSE, cls_create, create_data, cls_copy, copy_data, cls_close, close_data))) + if(NULL == (pclass = H5P_create_class(par_class, name, H5P_TYPE_USER, cls_create, create_data, cls_copy, copy_data, cls_close, close_data))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCREATE, FAIL, "unable to create property list class") /* Get an atom for the class */ @@ -1147,6 +1147,7 @@ H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data) { H5P_iter_ud_t udata; /* User data for internal iterator callback */ int fake_idx = 0; /* Index when user doesn't provide one */ + void *obj; /* Property object to copy */ int ret_value; /* return value */ FUNC_ENTER_API(FAIL) @@ -1155,6 +1156,8 @@ H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data) /* Check arguments. */ if(H5I_GENPROP_LST != H5I_get_type(id) && H5I_GENPROP_CLS != H5I_get_type(id)) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property object"); + if(NULL == (obj = H5I_object(id))) + HGOTO_ERROR(H5E_PLIST, H5E_NOTFOUND, FAIL, "property object doesn't exist"); if(iter_func == NULL) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration callback"); @@ -1165,13 +1168,13 @@ H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data) if(H5I_GENPROP_LST == H5I_get_type(id)) { /* Iterate over a property list */ - if((ret_value = H5P_iterate_plist(id, (idx ? idx : &fake_idx), H5P__iterate_cb, &udata)) < 0) + if((ret_value = H5P_iterate_plist((H5P_genplist_t *)obj, TRUE, (idx ? idx : &fake_idx), H5P__iterate_cb, &udata)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "unable to iterate over list"); } /* end if */ else if(H5I_GENPROP_CLS == H5I_get_type(id)) { /* Iterate over a property class */ - if((ret_value = H5P_iterate_pclass(id, (idx ? idx : &fake_idx), H5P__iterate_cb, &udata)) < 0) + if((ret_value = H5P_iterate_pclass((H5P_genclass_t *)obj, (idx ? idx : &fake_idx), H5P__iterate_cb, &udata)) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTREGISTER, FAIL, "unable to iterate over class"); } /* end if */ else diff --git a/src/H5Pacpl.c b/src/H5Pacpl.c index 41a4f96..b30bf1e 100644 --- a/src/H5Pacpl.c +++ b/src/H5Pacpl.c @@ -64,6 +64,7 @@ /* Attribute creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_ACRT[1] = {{ "attribute create", /* Class name for debugging */ + H5P_TYPE_ATTRIBUTE_CREATE, /* Class type */ &H5P_CLS_STRING_CREATE_g, /* Parent class ID */ &H5P_CLS_ATTRIBUTE_CREATE_g, /* Pointer to class ID */ &H5P_LST_ATTRIBUTE_CREATE_g, /* Pointer to default property list ID */ diff --git a/src/H5Pdapl.c b/src/H5Pdapl.c index 9e75eaa..d21cdbf 100644 --- a/src/H5Pdapl.c +++ b/src/H5Pdapl.c @@ -82,15 +82,16 @@ static herr_t H5P__dacc_reg_prop(H5P_genclass_t *pclass); /* Dataset access property list class library initialization object */ const H5P_libclass_t H5P_CLS_DACC[1] = {{ "dataset access", /* Class name for debugging */ + H5P_TYPE_DATASET_ACCESS, /* Class type */ &H5P_CLS_LINK_ACCESS_g, /* Parent class ID */ &H5P_CLS_DATASET_ACCESS_g, /* Pointer to class ID */ &H5P_LST_DATASET_ACCESS_g, /* Pointer to default property list ID */ H5P__dacc_reg_prop, /* Default property registration routine */ - NULL, /* Class creation callback */ + NULL, /* Class creation callback */ NULL, /* Class creation callback info */ - NULL, /* Class copy callback */ + NULL, /* Class copy callback */ NULL, /* Class copy callback info */ - NULL, /* Class close callback */ + NULL, /* Class close callback */ NULL /* Class close callback info */ }}; @@ -271,3 +272,4 @@ H5Pget_chunk_cache(hid_t dapl_id, size_t *rdcc_nslots, size_t *rdcc_nbytes, doub done: FUNC_LEAVE_API(ret_value) } + diff --git a/src/H5Pdcpl.c b/src/H5Pdcpl.c index 2235944..6e7e820 100644 --- a/src/H5Pdcpl.c +++ b/src/H5Pdcpl.c @@ -76,7 +76,7 @@ /* Definitions for storage layout property */ #define H5D_CRT_LAYOUT_SIZE sizeof(H5O_layout_t) #define H5D_CRT_LAYOUT_DEF H5D_DEF_LAYOUT_CONTIG -#define H5D_CRT_LAYOUT_CMP H5P__dcrt_layout_cmp +#define H5D_CRT_LAYOUT_CMP H5P__dcrt_layout_cmp /* Definitions for fill value. size=0 means fill value will be 0 as * library default; size=-1 means fill value is undefined. */ #define H5D_CRT_FILL_VALUE_SIZE sizeof(H5O_fill_t) @@ -128,6 +128,7 @@ static int H5P__dcrt_ext_file_list_cmp(const void *value1, const void *value2, s /* Dataset creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_DCRT[1] = {{ "dataset create", /* Class name for debugging */ + H5P_TYPE_DATASET_CREATE, /* Class type */ &H5P_CLS_OBJECT_CREATE_g, /* Parent class ID */ &H5P_CLS_DATASET_CREATE_g, /* Pointer to class ID */ &H5P_LST_DATASET_CREATE_g, /* Pointer to default property list ID */ @@ -186,11 +187,11 @@ H5P__dcrt_reg_prop(H5P_genclass_t *pclass) /* Register the storage layout property */ if(H5P_register_real(pclass, H5D_CRT_LAYOUT_NAME, H5D_CRT_LAYOUT_SIZE, &layout, NULL, NULL, NULL, NULL, NULL, H5D_CRT_LAYOUT_CMP, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the fill value property */ if(H5P_register_real(pclass, H5D_CRT_FILL_VALUE_NAME, H5D_CRT_FILL_VALUE_SIZE, &fill, NULL, NULL, NULL, NULL, NULL, H5D_CRT_FILL_VALUE_CMP, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the space allocation time state property */ if(H5P_register_real(pclass, H5D_CRT_ALLOC_TIME_STATE_NAME, H5D_CRT_ALLOC_TIME_STATE_SIZE, &alloc_time_state, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) @@ -1508,7 +1509,7 @@ done: *------------------------------------------------------------------------- */ herr_t -H5P_get_fill_value(H5P_genplist_t *plist, const H5T_t *type, void *value/*out*/, +H5P_get_fill_value(H5P_genplist_t *plist, H5T_t *type, void *value/*out*/, hid_t dxpl_id) { H5O_fill_t fill; /* Fill value to retrieve */ diff --git a/src/H5Pdxpl.c b/src/H5Pdxpl.c index a4fc749..2596d35 100644 --- a/src/H5Pdxpl.c +++ b/src/H5Pdxpl.c @@ -47,50 +47,46 @@ /* ======== Data transfer properties ======== */ /* Definitions for maximum temp buffer size property */ -#define H5D_XFER_MAX_TEMP_BUF_SIZE sizeof(size_t) -#define H5D_XFER_MAX_TEMP_BUF_DEF H5D_TEMP_BUF_SIZE +#define H5D_XFER_MAX_TEMP_BUF_SIZE sizeof(size_t) +#define H5D_XFER_MAX_TEMP_BUF_DEF H5D_TEMP_BUF_SIZE /* Definitions for type conversion buffer property */ -#define H5D_XFER_TCONV_BUF_SIZE sizeof(void *) -#define H5D_XFER_TCONV_BUF_DEF NULL +#define H5D_XFER_TCONV_BUF_SIZE sizeof(void *) +#define H5D_XFER_TCONV_BUF_DEF NULL /* Definitions for background buffer property */ -#define H5D_XFER_BKGR_BUF_SIZE sizeof(void *) -#define H5D_XFER_BKGR_BUF_DEF NULL +#define H5D_XFER_BKGR_BUF_SIZE sizeof(void *) +#define H5D_XFER_BKGR_BUF_DEF NULL /* Definitions for background buffer type property */ -#define H5D_XFER_BKGR_BUF_TYPE_SIZE sizeof(H5T_bkg_t) +#define H5D_XFER_BKGR_BUF_TYPE_SIZE sizeof(H5T_bkg_t) #define H5D_XFER_BKGR_BUF_TYPE_DEF H5T_BKG_NO /* Definitions for B-tree node splitting ratio property */ /* (These default B-tree node splitting ratios are also used for splitting * group's B-trees as well as chunked dataset's B-trees - QAK) */ -#define H5D_XFER_BTREE_SPLIT_RATIO_SIZE sizeof(double[3]) -#define H5D_XFER_BTREE_SPLIT_RATIO_DEF {0.1, 0.5, 0.9} +#define H5D_XFER_BTREE_SPLIT_RATIO_SIZE sizeof(double[3]) +#define H5D_XFER_BTREE_SPLIT_RATIO_DEF {0.1, 0.5, 0.9} /* Definitions for vlen allocation function property */ -#define H5D_XFER_VLEN_ALLOC_SIZE sizeof(H5MM_allocate_t) -#define H5D_XFER_VLEN_ALLOC_DEF H5D_VLEN_ALLOC +#define H5D_XFER_VLEN_ALLOC_SIZE sizeof(H5MM_allocate_t) +#define H5D_XFER_VLEN_ALLOC_DEF H5D_VLEN_ALLOC /* Definitions for vlen allocation info property */ -#define H5D_XFER_VLEN_ALLOC_INFO_SIZE sizeof(void *) -#define H5D_XFER_VLEN_ALLOC_INFO_DEF H5D_VLEN_ALLOC_INFO +#define H5D_XFER_VLEN_ALLOC_INFO_SIZE sizeof(void *) +#define H5D_XFER_VLEN_ALLOC_INFO_DEF H5D_VLEN_ALLOC_INFO /* Definitions for vlen free function property */ -#define H5D_XFER_VLEN_FREE_SIZE sizeof(H5MM_free_t) -#define H5D_XFER_VLEN_FREE_DEF H5D_VLEN_FREE +#define H5D_XFER_VLEN_FREE_SIZE sizeof(H5MM_free_t) +#define H5D_XFER_VLEN_FREE_DEF H5D_VLEN_FREE /* Definitions for vlen free info property */ -#define H5D_XFER_VLEN_FREE_INFO_SIZE sizeof(void *) -#define H5D_XFER_VLEN_FREE_INFO_DEF H5D_VLEN_FREE_INFO -/* Definitions for file driver ID property */ -#define H5D_XFER_VFL_ID_SIZE sizeof(hid_t) -#define H5D_XFER_VFL_ID_DEF H5FD_VFD_DEFAULT -/* Definitions for file driver info property */ -#define H5D_XFER_VFL_INFO_SIZE sizeof(void *) -#define H5D_XFER_VFL_INFO_DEF NULL +#define H5D_XFER_VLEN_FREE_INFO_SIZE sizeof(void *) +#define H5D_XFER_VLEN_FREE_INFO_DEF H5D_VLEN_FREE_INFO /* Definitions for hyperslab vector size property */ /* (Be cautious about increasing the default size, there are arrays allocated * on the stack which depend on it - QAK) */ -#define H5D_XFER_HYPER_VECTOR_SIZE_SIZE sizeof(size_t) -#define H5D_XFER_HYPER_VECTOR_SIZE_DEF H5D_IO_VECTOR_SIZE +#define H5D_XFER_HYPER_VECTOR_SIZE_SIZE sizeof(size_t) +#define H5D_XFER_HYPER_VECTOR_SIZE_DEF H5D_IO_VECTOR_SIZE + +#ifdef H5_HAVE_PARALLEL /* Definitions for I/O transfer mode property */ -#define H5D_XFER_IO_XFER_MODE_SIZE sizeof(H5FD_mpio_xfer_t) -#define H5D_XFER_IO_XFER_MODE_DEF H5FD_MPIO_INDEPENDENT +#define H5D_XFER_IO_XFER_MODE_SIZE sizeof(H5FD_mpio_xfer_t) +#define H5D_XFER_IO_XFER_MODE_DEF H5FD_MPIO_INDEPENDENT /* Definitions for optimization of MPI-IO transfer mode property */ #define H5D_XFER_MPIO_COLLECTIVE_OPT_SIZE sizeof(H5FD_mpio_collective_opt_t) #define H5D_XFER_MPIO_COLLECTIVE_OPT_DEF H5FD_MPIO_COLLECTIVE_IO @@ -106,6 +102,17 @@ /* Definitions for chunk io mode property. */ #define H5D_MPIO_ACTUAL_IO_MODE_SIZE sizeof(H5D_mpio_actual_io_mode_t) #define H5D_MPIO_ACTUAL_IO_MODE_DEF H5D_MPIO_NO_COLLECTIVE +/* Definitions for cause of broken collective io property */ +#define H5D_MPIO_NO_COLLECTIVE_CAUSE_SIZE sizeof(H5D_mpio_no_collective_cause_t) +#define H5D_MPIO_NO_COLLECTIVE_CAUSE_DEF H5D_MPIO_COLLECTIVE +/* Definitions for memory MPI type property */ +#define H5FD_MPI_XFER_MEM_MPI_TYPE_SIZE sizeof(MPI_Datatype) +#define H5FD_MPI_XFER_MEM_MPI_TYPE_DEF MPI_DATATYPE_NULL +/* Definitions for file MPI type property */ +#define H5FD_MPI_XFER_FILE_MPI_TYPE_SIZE sizeof(MPI_Datatype) +#define H5FD_MPI_XFER_FILE_MPI_TYPE_DEF MPI_DATATYPE_NULL +#endif /* H5_HAVE_PARALLEL */ + /* Definitions for EDC property */ #define H5D_XFER_EDC_SIZE sizeof(H5Z_EDC_t) #define H5D_XFER_EDC_DEF H5Z_ENABLE_EDC @@ -118,15 +125,10 @@ /* Definitions for data transform property */ #define H5D_XFER_XFORM_SIZE sizeof(void *) #define H5D_XFER_XFORM_DEF NULL -#define H5D_XFER_XFORM_DEL H5P_dxfr_xform_del -#define H5D_XFER_XFORM_COPY H5P_dxfr_xform_copy -#define H5D_XFER_XFORM_CLOSE H5P_dxfr_xform_close -/* Definitions for memory MPI type property */ -#define H5FD_MPI_XFER_MEM_MPI_TYPE_SIZE sizeof(MPI_Datatype) -#define H5FD_MPI_XFER_MEM_MPI_TYPE_DEF MPI_DATATYPE_NULL -/* Definitions for file MPI type property */ -#define H5FD_MPI_XFER_FILE_MPI_TYPE_SIZE sizeof(MPI_Datatype) -#define H5FD_MPI_XFER_FILE_MPI_TYPE_DEF MPI_DATATYPE_NULL +#define H5D_XFER_XFORM_DEL H5P__dxfr_xform_del +#define H5D_XFER_XFORM_COPY H5P__dxfr_xform_copy +#define H5D_XFER_XFORM_CMP H5P__dxfr_xform_cmp +#define H5D_XFER_XFORM_CLOSE H5P__dxfr_xform_close /******************/ /* Local Typedefs */ @@ -143,15 +145,13 @@ /********************/ /* Property class callbacks */ -static herr_t H5P_dxfr_reg_prop(H5P_genclass_t *pclass); -static herr_t H5P_dxfr_create(hid_t dxpl_id, void *create_data); -static herr_t H5P_dxfr_copy(hid_t dst_dxpl_id, hid_t src_dxpl_id, void *copy_data); -static herr_t H5P_dxfr_close(hid_t dxpl_id, void *close_data); +static herr_t H5P__dxfr_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ -static herr_t H5P_dxfr_xform_del(hid_t prop_id, const char* name, size_t size, void* value); -static herr_t H5P_dxfr_xform_copy(const char* name, size_t size, void* value); -static herr_t H5P_dxfr_xform_close(const char* name, size_t size, void* value); +static herr_t H5P__dxfr_xform_del(hid_t prop_id, const char* name, size_t size, void* value); +static herr_t H5P__dxfr_xform_copy(const char* name, size_t size, void* value); +static int H5P__dxfr_xform_cmp(const void *value1, const void *value2, size_t size); +static herr_t H5P__dxfr_xform_close(const char* name, size_t size, void* value); /*********************/ @@ -161,15 +161,16 @@ static herr_t H5P_dxfr_xform_close(const char* name, size_t size, void* value); /* Data transfer property list class library initialization object */ const H5P_libclass_t H5P_CLS_DXFR[1] = {{ "data transfer", /* Class name for debugging */ + H5P_TYPE_DATASET_XFER, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_DATASET_XFER_g, /* Pointer to class ID */ &H5P_LST_DATASET_XFER_g, /* Pointer to default property list ID */ - H5P_dxfr_reg_prop, /* Default property registration routine */ - H5P_dxfr_create, /* Class creation callback */ + H5P__dxfr_reg_prop, /* Default property registration routine */ + NULL, /* Class creation callback */ NULL, /* Class creation callback info */ - H5P_dxfr_copy, /* Class copy callback */ + NULL, /* Class copy callback */ NULL, /* Class copy callback info */ - H5P_dxfr_close, /* Class close callback */ + NULL, /* Class close callback */ NULL /* Class close callback info */ }}; @@ -181,7 +182,7 @@ const H5P_libclass_t H5P_CLS_DXFR[1] = {{ /*------------------------------------------------------------------------- - * Function: H5P_dxfr_reg_prop + * Function: H5P__dxfr_reg_prop * * Purpose: Register the data transfer property list class's properties * @@ -192,7 +193,7 @@ const H5P_libclass_t H5P_CLS_DXFR[1] = {{ *------------------------------------------------------------------------- */ static herr_t -H5P_dxfr_reg_prop(H5P_genclass_t *pclass) +H5P__dxfr_reg_prop(H5P_genclass_t *pclass) { size_t def_max_temp_buf = H5D_XFER_MAX_TEMP_BUF_DEF; /* Default value for maximum temp buffer size */ void *def_tconv_buf = H5D_XFER_TCONV_BUF_DEF; /* Default value for type conversion buffer */ @@ -203,8 +204,6 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) void *def_vlen_alloc_info = H5D_XFER_VLEN_ALLOC_INFO_DEF; /* Default value for vlen allocation information */ H5MM_free_t def_vlen_free = H5D_XFER_VLEN_FREE_DEF; /* Default value for vlen free function */ void *def_vlen_free_info = H5D_XFER_VLEN_FREE_INFO_DEF; /* Default value for vlen free information */ - hid_t def_vfl_id = H5D_XFER_VFL_ID_DEF; /* Default value for file driver ID */ - void *def_vfl_info = H5D_XFER_VFL_INFO_DEF; /* Default value for file driver info */ size_t def_hyp_vec_size = H5D_XFER_HYPER_VECTOR_SIZE_DEF; /* Default value for vector size */ haddr_t metadata_tag = H5AC_METADATA_TAG_DEF; /* Default value for metadata tag */ #ifdef H5_HAVE_PARALLEL @@ -215,6 +214,7 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) unsigned def_mpio_chunk_opt_ratio = H5D_XFER_MPIO_CHUNK_OPT_RATIO_DEF; H5D_mpio_actual_chunk_opt_mode_t def_mpio_actual_chunk_opt_mode = H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_DEF; H5D_mpio_actual_io_mode_t def_mpio_actual_io_mode = H5D_MPIO_ACTUAL_IO_MODE_DEF; + H5D_mpio_no_collective_cause_t def_mpio_no_collective_cause = H5D_MPIO_NO_COLLECTIVE_CAUSE_DEF; MPI_Datatype btype = H5FD_MPI_XFER_MEM_MPI_TYPE_DEF; /* Default value for MPI buffer type */ MPI_Datatype ftype = H5FD_MPI_XFER_FILE_MPI_TYPE_DEF; /* Default value for MPI file type */ #endif /* H5_HAVE_PARALLEL */ @@ -224,7 +224,7 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) void *def_xfer_xform = H5D_XFER_XFORM_DEF; /* Default value for data transform */ herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC /* Register the max. temp buffer size property */ if(H5P_register_real(pclass, H5D_XFER_MAX_TEMP_BUF_NAME, H5D_XFER_MAX_TEMP_BUF_SIZE, &def_max_temp_buf, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) @@ -266,14 +266,6 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) if(H5P_register_real(pclass, H5D_XFER_VLEN_FREE_INFO_NAME, H5D_XFER_VLEN_FREE_INFO_SIZE, &def_vlen_free_info, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the file driver ID property */ - if(H5P_register_real(pclass, H5D_XFER_VFL_ID_NAME, H5D_XFER_VFL_ID_SIZE, &def_vfl_id, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - - /* Register the file driver info property */ - if(H5P_register_real(pclass, H5D_XFER_VFL_INFO_NAME, H5D_XFER_VFL_INFO_SIZE, &def_vfl_info, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the vector size property */ if(H5P_register_real(pclass, H5D_XFER_HYPER_VECTOR_SIZE_NAME, H5D_XFER_HYPER_VECTOR_SIZE_SIZE, &def_hyp_vec_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") @@ -295,10 +287,18 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) if(H5P_register_real(pclass, H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_NAME, H5D_MPIO_ACTUAL_CHUNK_OPT_MODE_SIZE, &def_mpio_actual_chunk_opt_mode, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - /* Register the actual io mode property. */ + /* Register the actual I/O mode property. */ if(H5P_register_real(pclass, H5D_MPIO_ACTUAL_IO_MODE_NAME, H5D_MPIO_ACTUAL_IO_MODE_SIZE, &def_mpio_actual_io_mode, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + /* Register the local cause of broken collective I/O */ + if(H5P_register_real(pclass, H5D_MPIO_LOCAL_NO_COLLECTIVE_CAUSE_NAME, H5D_MPIO_NO_COLLECTIVE_CAUSE_SIZE, &def_mpio_actual_io_mode, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + + /* Register the global cause of broken collective I/O */ + if(H5P_register_real(pclass, H5D_MPIO_GLOBAL_NO_COLLECTIVE_CAUSE_NAME, H5D_MPIO_NO_COLLECTIVE_CAUSE_SIZE, &def_mpio_actual_io_mode, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + /* Register the MPI memory type property */ if(H5P_register_real(pclass, H5FD_MPI_XFER_MEM_MPI_TYPE_NAME, H5FD_MPI_XFER_MEM_MPI_TYPE_SIZE, &btype, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) @@ -308,7 +308,6 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) if(H5P_register_real(pclass, H5FD_MPI_XFER_FILE_MPI_TYPE_NAME, H5FD_MPI_XFER_FILE_MPI_TYPE_SIZE, &ftype, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") - #endif /* H5_HAVE_PARALLEL */ /* Register the EDC property */ @@ -324,168 +323,52 @@ H5P_dxfr_reg_prop(H5P_genclass_t *pclass) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the data transform property */ - if(H5P_register_real(pclass, H5D_XFER_XFORM_NAME, H5D_XFER_XFORM_SIZE, &def_xfer_xform, NULL, NULL, NULL, H5D_XFER_XFORM_DEL, H5D_XFER_XFORM_COPY, NULL, H5D_XFER_XFORM_CLOSE) < 0) + if(H5P_register_real(pclass, H5D_XFER_XFORM_NAME, H5D_XFER_XFORM_SIZE, &def_xfer_xform, NULL, NULL, NULL, H5D_XFER_XFORM_DEL, H5D_XFER_XFORM_COPY, H5D_XFER_XFORM_CMP, H5D_XFER_XFORM_CLOSE) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_reg_prop() */ +} /* end H5P__dxfr_reg_prop() */ -/*------------------------------------------------------------------------- - * Function: H5P_dxfr_create - * - * Purpose: Callback routine which is called whenever any dataset transfer - * property list is created. This routine performs any generic - * initialization needed on the properties the library put into - * the list. - * Right now, it's just allocating the driver-specific dataset - * transfer information. - * - * Return: Success: Non-negative - * - * Failure: Negative - * - * Programmer: Quincey Koziol - * Thursday, August 2, 2001 - * - *------------------------------------------------------------------------- - */ -/* ARGSUSED */ -static herr_t -H5P_dxfr_create(hid_t dxpl_id, void UNUSED *create_data) -{ - hid_t driver_id; /* VFL driver ID */ - void *driver_info; /* VFL driver info */ - H5P_genplist_t *plist; /* Property list */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - /* Check arguments */ - if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list") - - /* Get the driver information */ - if(H5P_get(plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve VFL driver ID") - if(H5P_get(plist, H5D_XFER_VFL_INFO_NAME, &driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve VFL driver info") - - /* Check if we have a valid driver ID */ - if(driver_id > 0) { - /* Set the driver for the property list */ - if(H5FD_dxpl_open(plist, driver_id, driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") - } /* end if */ - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_create() */ - - -/*------------------------------------------------------------------------- - * Function: H5P_dxfr_copy - * - * Purpose: Callback routine which is called whenever any dataset - * transfer property list is copied. This routine copies - * the properties from the old list to the new list. - * - * Return: Success: Non-negative - * - * Failure: Negative - * - * Programmer: Raymond Lu - * Tuesday, October 2, 2001 - * - *------------------------------------------------------------------------- - */ -/* ARGSUSED */ -static herr_t -H5P_dxfr_copy(hid_t dst_dxpl_id, hid_t src_dxpl_id, void UNUSED *copy_data) -{ - hid_t driver_id; - void* driver_info; - H5P_genplist_t *dst_plist; /* Destination property list */ - H5P_genplist_t *src_plist; /* Source property list */ - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_NOAPI_NOINIT - - if(NULL == (dst_plist = (H5P_genplist_t *)H5I_object(dst_dxpl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") - if(NULL == (src_plist = (H5P_genplist_t *)H5I_object(src_dxpl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") - - /* Get values from old property list */ - if(H5P_get(src_plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve VFL driver ID") - if(H5P_get(src_plist, H5D_XFER_VFL_INFO_NAME, &driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get drver info") - - if(driver_id > 0) { - /* Set the driver for the property list */ - if(H5FD_dxpl_open(dst_plist, driver_id, driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") - } /* end if */ - -done: - FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_copy() */ /*------------------------------------------------------------------------- - * Function: H5P_dxfr_close + * Function: H5P_dxfr_xform_del * - * Purpose: Callback routine which is called whenever any dataset transfer - * property list is closed. This routine performs any generic - * cleanup needed on the properties the library put into the list. - * Right now, it's just freeing the driver-specific dataset - * transfer information. + * Purpose: Frees memory allocated by H5P_dxfr_xform_set * - * Return: Success: Non-negative + * Return: Success: SUCCEED, Failure: FAIL * - * Failure: Negative + * Programmer: Leon Arber larber@uiuc.edu * - * Programmer: Quincey Koziol - * Wednesday, July 11, 2001 + * Date: April 9, 2004 * *------------------------------------------------------------------------- */ /* ARGSUSED */ static herr_t -H5P_dxfr_close(hid_t dxpl_id, void UNUSED *close_data) +H5P__dxfr_xform_del(hid_t UNUSED prop_id, const char UNUSED *name, size_t UNUSED size, void *value) { - hid_t driver_id; /* VFL driver ID */ - void *driver_info; /* VFL driver info */ - H5P_genplist_t *plist; /* Property list */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC - /* Check arguments */ - if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list") + HDassert(value); - if(H5P_get(plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve VFL driver ID") - if(H5P_get(plist, H5D_XFER_VFL_INFO_NAME, &driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve VFL driver info") - if(driver_id > 0) { - /* Close the driver for the property list */ - if(H5FD_dxpl_close(driver_id, driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't reset driver") - } /* end if */ + if(H5Z_xform_destroy(*(H5Z_data_xform_t **)value) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, FAIL, "error closing the parse tree") done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_close() */ +} /* end H5P__dxfr_xform_del() */ /*------------------------------------------------------------------------- - * Function: H5P_dxfr_xform_del + * Function: H5P__dxfr_xform_copy * - * Purpose: Frees memory allocated by H5P_dxfr_xform_set + * Purpose: Creates a copy of the user's data transform string and its + * associated parse tree. * * Return: Success: SUCCEED, Failure: FAIL * @@ -497,56 +380,78 @@ done: */ /* ARGSUSED */ static herr_t -H5P_dxfr_xform_del(hid_t UNUSED prop_id, const char UNUSED *name, size_t UNUSED size, void *value) +H5P__dxfr_xform_copy(const char UNUSED *name, size_t UNUSED size, void *value) { - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC HDassert(value); - if(H5Z_xform_destroy(*(H5Z_data_xform_t **)value) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, FAIL, "error closing the parse tree") + if(H5Z_xform_copy((H5Z_data_xform_t **)value) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, FAIL, "error copying the data transform info") done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_xform_del() */ +} /* end H5P__dxfr_xform_copy() */ /*------------------------------------------------------------------------- - * Function: H5P_dxfr_xform_copy + * Function: H5P__dxfr_xform_cmp * - * Purpose: Creates a copy of the user's data transform string and its - * associated parse tree. - * - * Return: Success: SUCCEED, Failure: FAIL + * Purpose: Compare two data transforms. * - * Programmer: Leon Arber larber@uiuc.edu + * Return: positive if VALUE1 is greater than VALUE2, negative if VALUE2 is + * greater than VALUE1 and zero if VALUE1 and VALUE2 are equal. * - * Date: April 9, 2004 + * Programmer: Quincey Koziol + * Wednesday, August 15, 2012 * *------------------------------------------------------------------------- */ -/* ARGSUSED */ -static herr_t -H5P_dxfr_xform_copy(const char UNUSED *name, size_t UNUSED size, void *value) +static int +H5P__dxfr_xform_cmp(const void *_xform1, const void *_xform2, size_t UNUSED size) { - herr_t ret_value = SUCCEED; + const H5Z_data_xform_t * const *xform1 = (const H5Z_data_xform_t * const *)_xform1; /* Create local aliases for values */ + const H5Z_data_xform_t * const *xform2 = (const H5Z_data_xform_t * const *)_xform2; /* Create local aliases for values */ + const char *pexp1, *pexp2; /* Pointers to transform expressions */ + herr_t ret_value = 0; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC_NOERR - HDassert(value); + /* Sanity check */ + HDassert(xform1); + HDassert(xform2); + HDassert(size == sizeof(H5Z_data_xform_t *)); - if(H5Z_xform_copy((H5Z_data_xform_t **)value) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, FAIL, "error copying the data transform info") + /* Check for a property being set */ + if(*xform1 == NULL && *xform2 != NULL) HGOTO_DONE(-1); + if(*xform1 != NULL && *xform2 == NULL) HGOTO_DONE(1); + + if(*xform1) { + HDassert(*xform2); + + /* Get the transform expressions */ + pexp1 = H5Z_xform_extract_xform_str(*xform1); + pexp2 = H5Z_xform_extract_xform_str(*xform2); + + /* Check for property expressions */ + if(pexp1 == NULL && pexp2 != NULL) HGOTO_DONE(-1); + if(pexp1 != NULL && pexp2 == NULL) HGOTO_DONE(1); + + if(pexp1) { + HDassert(pexp2); + ret_value = HDstrcmp(pexp1, pexp2); + } /* end if */ + } /* end if */ done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_xform_copy() */ +} /* end H5P__dxfr_xform_copy() */ /*------------------------------------------------------------------------- - * Function: H5P_dxfr_xform_close + * Function: H5P__dxfr_xform_close * * Purpose: Frees memory allocated by H5P_dxfr_xform_set * @@ -560,11 +465,11 @@ done: */ /* ARGSUSED */ static herr_t -H5P_dxfr_xform_close(const char UNUSED *name, size_t UNUSED size, void *value) +H5P__dxfr_xform_close(const char UNUSED *name, size_t UNUSED size, void *value) { - herr_t ret_value = SUCCEED; + herr_t ret_value = SUCCEED; /* Return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_STATIC HDassert(value); @@ -573,18 +478,15 @@ H5P_dxfr_xform_close(const char UNUSED *name, size_t UNUSED size, void *value) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5P_dxfr_xform_close() */ +} /* end H5P__dxfr_xform_close() */ /*------------------------------------------------------------------------- * Function: H5Pset_data_transform * - * Purpose: - * Sets data transform expression. - * - * - * Return: Returns a non-negative value if successful; otherwise returns a negative value. + * Purpose: Sets data transform expression. * + * Return: Non-negative on success/Negative on failure * * Programmer: Leon Arber * Monday, March 07, 2004 @@ -606,12 +508,16 @@ H5Pset_data_transform(hid_t plist_id, const char *expression) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "expression cannot be NULL") /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* See if a data transform is already set, and free it if it is */ - if(H5P_get(plist, H5D_XFER_XFORM_NAME, &data_xform_prop) >= 0) - H5Z_xform_destroy(data_xform_prop); + if(H5P_get(plist, H5D_XFER_XFORM_NAME, &data_xform_prop) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "error getting data transform expression") + + /* Destroy previous data transform property */ + if(H5Z_xform_destroy(data_xform_prop) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CLOSEERROR, FAIL, "unable to release data transform expression") /* Create data transform info from expression */ if(NULL == (data_xform_prop = H5Z_xform_create(expression))) @@ -623,9 +529,8 @@ H5Pset_data_transform(hid_t plist_id, const char *expression) done: if(ret_value < 0) { - if(data_xform_prop) - if(H5Z_xform_destroy(data_xform_prop) < 0) - HDONE_ERROR(H5E_PLINE, H5E_CLOSEERROR, FAIL, "unable to release data transform expression") + if(data_xform_prop && H5Z_xform_destroy(data_xform_prop) < 0) + HDONE_ERROR(H5E_PLINE, H5E_CLOSEERROR, FAIL, "unable to release data transform expression") } /* end if */ FUNC_LEAVE_API(ret_value) @@ -635,10 +540,9 @@ done: /*------------------------------------------------------------------------- * Function: H5Pget_data_transform * - * Purpose: - * Gets data transform expression. + * Purpose: Gets data transform expression. * - * Return: Returns a non-negative value if successful; otherwise returns a negative value. + * Return: Non-negative on success/Negative on failure * * Comments: * If `expression' is non-NULL then write up to `size' bytes into that @@ -661,7 +565,7 @@ H5Pget_data_transform(hid_t plist_id, char *expression /*out*/, size_t size) H5P_genplist_t *plist; /* Property list pointer */ H5Z_data_xform_t *data_xform_prop = NULL; /* New data xform property */ size_t len; - char* pexp; + const char* pexp; ssize_t ret_value; /* return value */ FUNC_ENTER_API(FAIL) @@ -675,13 +579,11 @@ H5Pget_data_transform(hid_t plist_id, char *expression /*out*/, size_t size) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "error getting data transform expression") if(NULL == data_xform_prop) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "data transform has not been set") + HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "data transform has not been set") /* Get the data transform string */ - pexp = H5Z_xform_extract_xform_str(data_xform_prop); - - if(!pexp) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "failed to retrieve transform expression") + if(NULL == (pexp = H5Z_xform_extract_xform_str(data_xform_prop))) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "failed to retrieve transform expression") len = HDstrlen(pexp); if(expression) { @@ -694,9 +596,8 @@ H5Pget_data_transform(hid_t plist_id, char *expression /*out*/, size_t size) done: if(ret_value < 0) { - if(data_xform_prop) - if(H5Z_xform_destroy(data_xform_prop) < 0) - HDONE_ERROR(H5E_PLINE, H5E_CLOSEERROR, FAIL, "unable to release data transform expression") + if(data_xform_prop && H5Z_xform_destroy(data_xform_prop) < 0) + HDONE_ERROR(H5E_PLINE, H5E_CLOSEERROR, FAIL, "unable to release data transform expression") } /* end if */ FUNC_LEAVE_API(ret_value) @@ -722,21 +623,19 @@ done: * Programmer: Robb Matzke * Monday, March 16, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE4("e", "iz*x*x", plist_id, size, tconv, bkg); /* Check arguments */ - if (size<=0) + if(size == 0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buffer size must not be zero") /* Get the plist structure */ @@ -744,16 +643,16 @@ H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Update property list */ - if(H5P_set(plist, H5D_XFER_MAX_TEMP_BUF_NAME, &size)<0) + if(H5P_set(plist, H5D_XFER_MAX_TEMP_BUF_NAME, &size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "Can't set transfer buffer size") - if(H5P_set(plist, H5D_XFER_TCONV_BUF_NAME, &tconv)<0) + if(H5P_set(plist, H5D_XFER_TCONV_BUF_NAME, &tconv) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "Can't set transfer type conversion buffer") - if(H5P_set(plist, H5D_XFER_BKGR_BUF_NAME, &bkg)<0) + if(H5P_set(plist, H5D_XFER_BKGR_BUF_NAME, &bkg) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "Can't set background type conversion buffer") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_buffer() */ /*------------------------------------------------------------------------- @@ -768,8 +667,6 @@ done: * Programmer: Robb Matzke * Monday, March 16, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ size_t @@ -783,27 +680,27 @@ H5Pget_buffer(hid_t plist_id, void **tconv/*out*/, void **bkg/*out*/) H5TRACE3("z", "ixx", plist_id, tconv, bkg); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, 0, "can't find object for ID") /* Return values */ - if (tconv) - if(H5P_get(plist, H5D_XFER_TCONV_BUF_NAME, tconv)<0) + if(tconv) + if(H5P_get(plist, H5D_XFER_TCONV_BUF_NAME, tconv) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, 0, "Can't get transfer type conversion buffer") - if (bkg) - if(H5P_get(plist, H5D_XFER_BKGR_BUF_NAME, bkg)<0) + if(bkg) + if(H5P_get(plist, H5D_XFER_BKGR_BUF_NAME, bkg) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, 0, "Can't get background type conversion buffer") /* Get the size */ - if(H5P_get(plist, H5D_XFER_MAX_TEMP_BUF_NAME, &size)<0) + if(H5P_get(plist, H5D_XFER_MAX_TEMP_BUF_NAME, &size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, 0, "Can't set transfer buffer size") /* Set the return value */ - ret_value=size; + ret_value = size; done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_buffer() */ /*------------------------------------------------------------------------- @@ -820,32 +717,30 @@ done: * Programmer: Robb Matzke * Tuesday, March 17, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_preserve(hid_t plist_id, hbool_t status) { - H5T_bkg_t need_bkg; /* Value for background buffer type */ H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + H5T_bkg_t need_bkg; /* Value for background buffer type */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "ib", plist_id, status); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Update property list */ need_bkg = status ? H5T_BKG_YES : H5T_BKG_NO; - if (H5P_set(plist,H5D_XFER_BKGR_BUF_TYPE_NAME,&need_bkg)<0) + if(H5P_set(plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_preserve() */ /*------------------------------------------------------------------------- @@ -860,8 +755,6 @@ done: * Programmer: Robb Matzke * Tuesday, March 17, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ int @@ -875,19 +768,19 @@ H5Pget_preserve(hid_t plist_id) H5TRACE1("Is", "i", plist_id); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Get value */ - if (H5P_get(plist,H5D_XFER_BKGR_BUF_TYPE_NAME,&need_bkg)<0) + if(H5P_get(plist, H5D_XFER_BKGR_BUF_TYPE_NAME, &need_bkg) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") /* Set return value */ - ret_value= need_bkg ? TRUE : FALSE; + ret_value = need_bkg ? TRUE : FALSE; done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_preserve() */ /*------------------------------------------------------------------------- @@ -903,21 +796,19 @@ done: * Programmer: Raymond Lu * Jan 3, 2003 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iZe", plist_id, check); /* Check argument */ - if (check != H5Z_ENABLE_EDC && check != H5Z_DISABLE_EDC) + if(check != H5Z_ENABLE_EDC && check != H5Z_DISABLE_EDC) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid value") /* Get the plist structure */ @@ -925,12 +816,12 @@ H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Update property list */ - if (H5P_set(plist,H5D_XFER_EDC_NAME,&check)<0) + if(H5P_set(plist, H5D_XFER_EDC_NAME, &check) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_edc_check() */ /*------------------------------------------------------------------------- @@ -946,15 +837,13 @@ done: * Programmer: Raymond Lu * Jan 3, 2003 * - * Modifications: - * *------------------------------------------------------------------------- */ H5Z_EDC_t H5Pget_edc_check(hid_t plist_id) { H5P_genplist_t *plist; /* Property list pointer */ - H5Z_EDC_t ret_value; /* return value */ + H5Z_EDC_t ret_value; /* Return value */ FUNC_ENTER_API(H5Z_ERROR_EDC) H5TRACE1("Ze", "i", plist_id); @@ -964,16 +853,12 @@ H5Pget_edc_check(hid_t plist_id) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5Z_ERROR_EDC, "can't find object for ID") /* Update property list */ - if (H5P_get(plist,H5D_XFER_EDC_NAME,&ret_value)<0) + if(H5P_get(plist, H5D_XFER_EDC_NAME, &ret_value) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, H5Z_ERROR_EDC, "unable to set value") - /* check valid value */ - if (ret_value != H5Z_ENABLE_EDC && ret_value != H5Z_DISABLE_EDC) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5Z_ERROR_EDC, "not a valid value") - done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_edc_check() */ /*------------------------------------------------------------------------- @@ -1116,40 +1001,38 @@ done: * Programmer: Robb Matzke * Monday, September 28, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pget_btree_ratios(hid_t plist_id, double *left/*out*/, double *middle/*out*/, - double *right/*out*/) + double *right/*out*/) { + H5P_genplist_t *plist; /* Property list pointer */ double btree_split_ratio[3]; /* B-tree node split ratios */ - H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE4("e", "ixxx", plist_id, left, middle, right); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Get the split ratios */ - if (H5P_get(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&btree_split_ratio)<0) + if(H5P_get(plist, H5D_XFER_BTREE_SPLIT_RATIO_NAME, &btree_split_ratio) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") /* Get values */ - if (left) + if(left) *left = btree_split_ratio[0]; - if (middle) + if(middle) *middle = btree_split_ratio[1]; - if (right) + if(right) *right = btree_split_ratio[2]; done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_btree_ratios() */ /*------------------------------------------------------------------------- @@ -1170,28 +1053,26 @@ done: * Programmer: Robb Matzke * Monday, September 28, 1998 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle, - double right) + double right) { - double split_ratio[3]; /* B-tree node split ratios */ H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + double split_ratio[3]; /* B-tree node split ratios */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE4("e", "iddd", plist_id, left, middle, right); /* Check arguments */ - if (left<0.0 || left>1.0 || middle<0.0 || middle>1.0 || - right<0.0 || right>1.0) + if(left < 0.0 || left > 1.0 || middle < 0.0 || middle > 1.0 || + right < 0.0 || right > 1.0) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "split ratio must satisfy 0.0<=X<=1.0") /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Set values */ @@ -1200,12 +1081,12 @@ H5Pset_btree_ratios(hid_t plist_id, double left, double middle, split_ratio[2] = right; /* Set the split ratios */ - if (H5P_set(plist,H5D_XFER_BTREE_SPLIT_RATIO_NAME,&split_ratio)<0) + if(H5P_set(plist, H5D_XFER_BTREE_SPLIT_RATIO_NAME, &split_ratio) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pset_btree_ratios() */ /*------------------------------------------------------------------------- @@ -1225,28 +1106,26 @@ done: * Programmer: Quincey Koziol * Thursday, July 1, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5P_set_vlen_mem_manager(H5P_genplist_t *plist, H5MM_allocate_t alloc_func, - void *alloc_info, H5MM_free_t free_func, void *free_info) + void *alloc_info, H5MM_free_t free_func, void *free_info) { - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) - assert(plist); + HDassert(plist); /* Update property list */ - if (H5P_set(plist,H5D_XFER_VLEN_ALLOC_NAME,&alloc_func)<0) + if(H5P_set(plist, H5D_XFER_VLEN_ALLOC_NAME, &alloc_func) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - if (H5P_set(plist,H5D_XFER_VLEN_ALLOC_INFO_NAME,&alloc_info)<0) + if(H5P_set(plist, H5D_XFER_VLEN_ALLOC_INFO_NAME, &alloc_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - if (H5P_set(plist,H5D_XFER_VLEN_FREE_NAME,&free_func)<0) + if(H5P_set(plist, H5D_XFER_VLEN_FREE_NAME, &free_func) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") - if (H5P_set(plist,H5D_XFER_VLEN_FREE_INFO_NAME,&free_info)<0) + if(H5P_set(plist, H5D_XFER_VLEN_FREE_INFO_NAME, &free_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") done: @@ -1271,27 +1150,25 @@ done: * Programmer: Quincey Koziol * Thursday, July 1, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t alloc_func, - void *alloc_info, H5MM_free_t free_func, void *free_info) + void *alloc_info, H5MM_free_t free_func, void *free_info) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE5("e", "ix*xx*x", plist_id, alloc_func, alloc_info, free_func, free_info); /* Check arguments */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list") /* Update property list */ - if (H5P_set_vlen_mem_manager(plist,alloc_func,alloc_info,free_func,free_info)<0) + if(H5P_set_vlen_mem_manager(plist, alloc_func, alloc_info, free_func, free_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set values") done: @@ -1309,42 +1186,38 @@ done: * Programmer: Quincey Koziol * Thursday, July 1, 1999 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pget_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t *alloc_func/*out*/, - void **alloc_info/*out*/, - H5MM_free_t *free_func/*out*/, - void **free_info/*out*/) + void **alloc_info/*out*/, H5MM_free_t *free_func/*out*/, void **free_info/*out*/) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE5("e", "ixxxx", plist_id, alloc_func, alloc_info, free_func, free_info); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - if(alloc_func!=NULL) - if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_NAME,alloc_func)<0) + if(alloc_func) + if(H5P_get(plist, H5D_XFER_VLEN_ALLOC_NAME, alloc_func) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") - if(alloc_info!=NULL) - if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_INFO_NAME,alloc_info)<0) + if(alloc_info) + if(H5P_get(plist, H5D_XFER_VLEN_ALLOC_INFO_NAME, alloc_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") - if(free_func!=NULL) - if (H5P_get(plist,H5D_XFER_VLEN_FREE_NAME,free_func)<0) + if(free_func) + if(H5P_get(plist, H5D_XFER_VLEN_FREE_NAME, free_func) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") - if(free_info!=NULL) - if (H5P_get(plist,H5D_XFER_VLEN_FREE_INFO_NAME,free_info)<0) + if(free_info) + if(H5P_get(plist, H5D_XFER_VLEN_FREE_INFO_NAME, free_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_vlen_mem_manager() */ /*------------------------------------------------------------------------- @@ -1366,29 +1239,27 @@ done: * Programmer: Quincey Koziol * Monday, July 9, 2001 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_hyper_vector_size(hid_t plist_id, size_t vector_size) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "iz", plist_id, vector_size); /* Check arguments */ - if (vector_size<1) + if(vector_size < 1) HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "vector size too small") /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Update property list */ - if (H5P_set(plist,H5D_XFER_HYPER_VECTOR_SIZE_NAME,&vector_size)<0) + if(H5P_set(plist, H5D_XFER_HYPER_VECTOR_SIZE_NAME, &vector_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value") done: @@ -1406,34 +1277,32 @@ done: * Programmer: Quincey Koziol * Monday, July 9, 2001 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pget_hyper_vector_size(hid_t plist_id, size_t *vector_size/*out*/) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value=SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "ix", plist_id, vector_size); /* Get the plist structure */ - if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER))) + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Return values */ - if (vector_size) - if (H5P_get(plist,H5D_XFER_HYPER_VECTOR_SIZE_NAME,vector_size)<0) + if(vector_size) + if(H5P_get(plist, H5D_XFER_HYPER_VECTOR_SIZE_NAME, vector_size) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value") done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_hyper_vector_size() */ - #ifdef H5_HAVE_PARALLEL + /*------------------------------------------------------------------------- * Function: H5Pget_mpio_actual_chunk_opt_mode * @@ -1443,6 +1312,7 @@ done: * * Programmer: Jacob Gruber * Wednesday, May 4, 2011 + * *------------------------------------------------------------------------- */ herr_t @@ -1478,6 +1348,7 @@ done: * * Programmer: Jacob Gruber * Wednesday, May 4, 2011 + * *------------------------------------------------------------------------- */ herr_t @@ -1501,5 +1372,44 @@ H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_mpio_actual_io_mode() */ + +/*------------------------------------------------------------------------- + * Function: H5Pget_mpio_no_collective_cause + * + * Purpose: Retrieves cause for the broke collective I/O + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Jonathan Kim + * Aug 3, 2012 + *------------------------------------------------------------------------- + */ +herr_t +H5Pget_mpio_no_collective_cause(hid_t plist_id, H5D_mpio_no_collective_cause_t *local_no_collective_cause, H5D_mpio_no_collective_cause_t *global_no_collective_cause) +{ + H5P_genplist_t *plist; + herr_t ret_value = SUCCEED; /* return value */ + + FUNC_ENTER_API(FAIL) + H5TRACE3("e", "i*Dn*Dn", plist_id, local_no_collective_cause, + global_no_collective_cause); + + /* Get the plist structure */ + if(NULL == (plist = H5P_object_verify(plist_id, H5P_DATASET_XFER))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") + + /* Return values */ + if(local_no_collective_cause) + if(H5P_get(plist, H5D_MPIO_LOCAL_NO_COLLECTIVE_CAUSE_NAME, local_no_collective_cause) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get local value") + if(global_no_collective_cause) + if(H5P_get(plist, H5D_MPIO_GLOBAL_NO_COLLECTIVE_CAUSE_NAME, global_no_collective_cause) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get global value") + +done: + FUNC_LEAVE_API(ret_value) +} /* end H5Pget_mpio_no_collective_cause() */ + + #endif /* H5_HAVE_PARALLEL */ diff --git a/src/H5Pfapl.c b/src/H5Pfapl.c index 7f72c85..9707357 100644 --- a/src/H5Pfapl.c +++ b/src/H5Pfapl.c @@ -145,12 +145,6 @@ /* Local Prototypes */ /********************/ -/* General routines */ -static herr_t H5P_set_family_offset(H5P_genplist_t *plist, hsize_t offset); -static herr_t H5P_get_family_offset(H5P_genplist_t *plist, hsize_t *offset); -static herr_t H5P_set_multi_type(H5P_genplist_t *plist, H5FD_mem_t type); -static herr_t H5P_get_multi_type(H5P_genplist_t *plist, H5FD_mem_t *type); - /* Property class callbacks */ static herr_t H5P_facc_reg_prop(H5P_genclass_t *pclass); static herr_t H5P_facc_create(hid_t fapl_id, void *copy_data); @@ -168,6 +162,7 @@ static herr_t H5P_file_image_info_close(const char *name, size_t size, void *val /* File access property list class library initialization object */ const H5P_libclass_t H5P_CLS_FACC[1] = {{ "file access", /* Class name for debugging */ + H5P_TYPE_FILE_ACCESS, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_FILE_ACCESS_g, /* Pointer to class ID */ &H5P_LST_FILE_ACCESS_g, /* Pointer to default property list ID */ @@ -233,88 +228,88 @@ H5P_facc_reg_prop(H5P_genclass_t *pclass) /* Register the initial metadata cache resize configuration */ if(H5P_register_real(pclass, H5F_ACS_META_CACHE_INIT_CONFIG_NAME, H5F_ACS_META_CACHE_INIT_CONFIG_SIZE, &mdc_initCacheCfg, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the size of raw data chunk cache (elements) */ if(H5P_register_real(pclass, H5F_ACS_DATA_CACHE_NUM_SLOTS_NAME, H5F_ACS_DATA_CACHE_NUM_SLOTS_SIZE, &rdcc_nslots, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the size of raw data chunk cache(bytes) */ if(H5P_register_real(pclass, H5F_ACS_DATA_CACHE_BYTE_SIZE_NAME, H5F_ACS_DATA_CACHE_BYTE_SIZE_SIZE, &rdcc_nbytes, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the preemption for reading chunks */ if(H5P_register_real(pclass, H5F_ACS_PREEMPT_READ_CHUNKS_NAME, H5F_ACS_PREEMPT_READ_CHUNKS_SIZE, &rdcc_w0, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the threshold for alignment */ if(H5P_register_real(pclass, H5F_ACS_ALIGN_THRHD_NAME, H5F_ACS_ALIGN_THRHD_SIZE, &threshold, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the alignment */ if(H5P_register_real(pclass, H5F_ACS_ALIGN_NAME, H5F_ACS_ALIGN_SIZE, &alignment, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the minimum metadata allocation block size */ if(H5P_register_real(pclass, H5F_ACS_META_BLOCK_SIZE_NAME, H5F_ACS_META_BLOCK_SIZE_SIZE, &meta_block_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the maximum sieve buffer size */ if(H5P_register_real(pclass, H5F_ACS_SIEVE_BUF_SIZE_NAME, H5F_ACS_SIEVE_BUF_SIZE_SIZE, &sieve_buf_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the minimum "small data" allocation block size */ if(H5P_register_real(pclass, H5F_ACS_SDATA_BLOCK_SIZE_NAME, H5F_ACS_SDATA_BLOCK_SIZE_SIZE, &sdata_block_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the garbage collection reference */ if(H5P_register_real(pclass, H5F_ACS_GARBG_COLCT_REF_NAME, H5F_ACS_GARBG_COLCT_REF_SIZE, &gc_ref, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file driver ID */ if(H5P_register_real(pclass, H5F_ACS_FILE_DRV_ID_NAME, H5F_ACS_FILE_DRV_ID_SIZE, &driver_id, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file driver info */ if(H5P_register_real(pclass, H5F_ACS_FILE_DRV_INFO_NAME, H5F_ACS_FILE_DRV_INFO_SIZE, &driver_info, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file close degree */ if(H5P_register_real(pclass, H5F_ACS_CLOSE_DEGREE_NAME, H5F_CLOSE_DEGREE_SIZE, &close_degree, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the offset of family driver info */ if(H5P_register_real(pclass, H5F_ACS_FAMILY_OFFSET_NAME, H5F_ACS_FAMILY_OFFSET_SIZE, &family_offset, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the private property of new family file size. It's used by h5repart only. */ if(H5P_register_real(pclass, H5F_ACS_FAMILY_NEWSIZE_NAME, H5F_ACS_FAMILY_NEWSIZE_SIZE, &family_newsize, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the private property of whether convert family to sec2 driver. It's used by h5repart only. */ if(H5P_register_real(pclass, H5F_ACS_FAMILY_TO_SEC2_NAME, H5F_ACS_FAMILY_TO_SEC2_SIZE, &family_to_sec2, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the data type of multi driver info */ if(H5P_register_real(pclass, H5F_ACS_MULTI_TYPE_NAME, H5F_ACS_MULTI_TYPE_SIZE, &mem_type, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the 'use the latest version of the format' flag */ if(H5P_register_real(pclass, H5F_ACS_LATEST_FORMAT_NAME, H5F_ACS_LATEST_FORMAT_SIZE, &latest_format, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the private property of whether to retrieve the file descriptor from the core VFD */ /* (used internally to the library only) */ if(H5P_register_real(pclass, H5F_ACS_WANT_POSIX_FD_NAME, H5F_ACS_WANT_POSIX_FD_SIZE, &want_posix_fd, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the external file cache size */ if(H5P_register_real(pclass, H5F_ACS_EFC_SIZE_NAME, H5F_ACS_EFC_SIZE_SIZE, &efc_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the initial file image info */ if(H5P_register_real(pclass, H5F_ACS_FILE_IMAGE_INFO_NAME, H5F_ACS_FILE_IMAGE_INFO_SIZE, &file_image_info, NULL, NULL, NULL, H5F_ACS_FILE_IMAGE_INFO_DEL, H5F_ACS_FILE_IMAGE_INFO_COPY, NULL, H5F_ACS_FILE_IMAGE_INFO_CLOSE) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") done: FUNC_LEAVE_NOAPI(ret_value) @@ -543,47 +538,40 @@ done: * Programmer: Robb Matzke * Tuesday, June 9, 1998 * - * Modifications: - * - * Raymond Lu - * Tuesday, Oct 23, 2001 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold/*out*/, - hsize_t *alignment/*out*/) + hsize_t *alignment/*out*/) { - H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value = SUCCEED; /* Return value */ + H5P_genplist_t *plist; /* Property list pointer */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE3("e", "ixx", fapl_id, threshold, alignment); /* Get the plist structure */ if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") /* Get values */ - if (threshold) + if(threshold) if(H5P_get(plist, H5F_ACS_ALIGN_THRHD_NAME, threshold) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get threshold"); - if (alignment) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get threshold") + if(alignment) if(H5P_get(plist, H5F_ACS_ALIGN_NAME, alignment) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get alignment"); + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get alignment") done: FUNC_LEAVE_API(ret_value) -} +} /* end H5Pget_alignment() */ /*------------------------------------------------------------------------- * Function: H5P_set_driver * - * Purpose: Set the file driver (DRIVER_ID) for a file access or data - * transfer property list (PLIST_ID) and supply an optional + * Purpose: Set the file driver (DRIVER_ID) for a file access + * property list (PLIST_ID) and supply an optional * struct containing the driver-specific properites * (DRIVER_INFO). The driver properties will be copied into the * property list and the reference count on the driver will be @@ -591,19 +579,11 @@ done: * still use the property list. * * Return: Success: Non-negative - * * Failure: Negative * * Programmer: Robb Matzke * Tuesday, August 3, 1999 * - * Modifications: - * - * Raymond Lu - * Tuesday, Oct 23, 2001 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ herr_t @@ -611,7 +591,7 @@ H5P_set_driver(H5P_genplist_t *plist, hid_t new_driver_id, const void *new_drive { hid_t driver_id; /* VFL driver ID */ void *driver_info; /* VFL driver info */ - herr_t ret_value = SUCCEED; /* Return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -626,29 +606,15 @@ H5P_set_driver(H5P_genplist_t *plist, hid_t new_driver_id, const void *new_drive HGOTO_ERROR(H5E_PLIST, H5E_CANTGET,FAIL,"can't get driver info") /* Close the driver for the property list */ - if(H5FD_fapl_close(driver_id, driver_info)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't reset driver") - - /* Set the driver for the property list */ - if(H5FD_fapl_open(plist, new_driver_id, new_driver_info)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") - } else if(TRUE == H5P_isa_class(plist->plist_id, H5P_DATASET_XFER)) { - /* Get the current driver information */ - if(H5P_get(plist, H5D_XFER_VFL_ID_NAME, &driver_id) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve VFL driver ID") - if(H5P_get(plist, H5D_XFER_VFL_INFO_NAME, &driver_info) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't retrieve VFL driver info") - - /* Close the driver for the property list */ - if(H5FD_dxpl_close(driver_id, driver_info) < 0) + if(H5FD_fapl_close(driver_id, driver_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't reset driver") /* Set the driver for the property list */ - if(H5FD_dxpl_open(plist, new_driver_id, new_driver_info) < 0) + if(H5FD_fapl_open(plist, new_driver_id, new_driver_info) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set driver") - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access or data transfer property list") - } + } /* end if */ + else + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list") done: FUNC_LEAVE_NOAPI(ret_value) @@ -658,8 +624,8 @@ done: /*------------------------------------------------------------------------- * Function: H5Pset_driver * - * Purpose: Set the file driver (DRIVER_ID) for a file access or data - * transfer property list (PLIST_ID) and supply an optional + * Purpose: Set the file driver (DRIVER_ID) for a file access + * property list (PLIST_ID) and supply an optional * struct containing the driver-specific properites * (DRIVER_INFO). The driver properties will be copied into the * property list and the reference count on the driver will be @@ -667,19 +633,11 @@ done: * still use the property list. * * Return: Success: Non-negative - * * Failure: Negative * * Programmer: Robb Matzke * Tuesday, August 3, 1999 * - * Modifications: - * - * Raymond Lu - * Tuesday, Oct 23, 2001 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ herr_t @@ -710,7 +668,7 @@ done: * Function: H5P_get_driver * * Purpose: Return the ID of the low-level file driver. PLIST_ID should - * be a file access property list or data transfer propert list. + * be a file access property list. * * Return: Success: A low-level driver ID which is the same ID * used when the driver was set for the property @@ -722,54 +680,36 @@ done: * Programmer: Robb Matzke * Thursday, February 26, 1998 * - * Modifications: - * Robb Matzke, 1999-08-03 - * Rewritten to use the virtual file layer. - * - * Robb Matzke, 1999-08-05 - * If the driver ID is H5FD_VFD_DEFAULT then substitute the - * current value of H5FD_SEC2. - * - * Quincey Koziol 2000-11-28 - * Added internal function.. - * - * Raymond Lu, 2001-10-23 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ hid_t H5P_get_driver(H5P_genplist_t *plist) { - hid_t ret_value=FAIL; /* Return value */ + hid_t ret_value = FAIL; /* Return value */ FUNC_ENTER_NOAPI(FAIL) /* Get the current driver ID */ - if(TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { + if(TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS)) { if(H5P_get(plist, H5F_ACS_FILE_DRV_ID_NAME, &ret_value) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get driver ID"); - } else if( TRUE == H5P_isa_class(plist->plist_id, H5P_DATASET_XFER) ) { - if(H5P_get(plist, H5D_XFER_VFL_ID_NAME, &ret_value)<0) - HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve VFL driver ID"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access or data transfer property list"); - } - - if (H5FD_VFD_DEFAULT==ret_value) + } /* end if */ + else + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list"); + + if(H5FD_VFD_DEFAULT == ret_value) ret_value = H5_DEFAULT_VFD; done: FUNC_LEAVE_NOAPI(ret_value) -} +} /* end H5P_get_driver() */ /*------------------------------------------------------------------------- * Function: H5Pget_driver * * Purpose: Return the ID of the low-level file driver. PLIST_ID should - * be a file access property list or data transfer propert list. + * be a file access property list. * * Return: Success: A low-level driver ID which is the same ID * used when the driver was set for the property @@ -781,16 +721,6 @@ done: * Programmer: Robb Matzke * Thursday, February 26, 1998 * - * Modifications: - * Robb Matzke, 1999-08-03 - * Rewritten to use the virtual file layer. - * - * Robb Matzke, 1999-08-05 - * If the driver ID is H5FD_VFD_DEFAULT then substitute the current value of - * H5FD_SEC2. - * - * Quincey Koziol 2000-11-28 - * Added internal function.. *------------------------------------------------------------------------- */ hid_t @@ -805,7 +735,9 @@ H5Pget_driver(hid_t plist_id) if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") - ret_value = H5P_get_driver(plist); + /* Get the driver */ + if((ret_value = H5P_get_driver(plist)) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get driver") done: FUNC_LEAVE_API(ret_value) @@ -816,7 +748,7 @@ done: * Function: H5P_get_driver_info * * Purpose: Returns a pointer directly to the file driver-specific - * information of a file access or data transfer property list. + * information of a file access. * * Return: Success: Ptr to *uncopied* driver specific data * structure if any. @@ -829,32 +761,22 @@ done: * Programmer: Robb Matzke * Wednesday, August 4, 1999 * - * Modifications: - * - * Raymond Lu - * Tuesday, Oct 23, 2001 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ void * H5P_get_driver_info(H5P_genplist_t *plist) { - void *ret_value=NULL; + void *ret_value = NULL; /* Return value */ FUNC_ENTER_NOAPI(NULL) /* Get the current driver info */ - if( TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { + if(TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS)) { if(H5P_get(plist, H5F_ACS_FILE_DRV_INFO_NAME, &ret_value) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTGET,NULL,"can't get driver info"); - } else if( TRUE == H5P_isa_class(plist->plist_id, H5P_DATASET_XFER) ) { - if(H5P_get(plist, H5D_XFER_VFL_INFO_NAME, &ret_value)<0) - HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, NULL, "Can't retrieve VFL driver ID"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access or data transfer property list"); - } + HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get driver info") + } /* end if */ + else + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list") done: FUNC_LEAVE_NOAPI(ret_value) @@ -865,7 +787,7 @@ done: * Function: H5Pget_driver_info * * Purpose: Returns a pointer directly to the file driver-specific - * information of a file access or data transfer property list. + * information of a file access. * * Return: Success: Ptr to *uncopied* driver specific data * structure if any. @@ -878,26 +800,20 @@ done: * Programmer: Robb Matzke * Wednesday, August 4, 1999 * - * Modifications: - * - * Raymond Lu - * Tuesday, Oct 23, 2001 - * Changed the file access list design to the new generic - * property list. - * *------------------------------------------------------------------------- */ void * H5Pget_driver_info(hid_t plist_id) { H5P_genplist_t *plist; /* Property list pointer */ - void *ret_value; /* Return value */ + void *ret_value; /* Return value */ FUNC_ENTER_API(NULL) if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a property list") + /* Get the driver info */ if(NULL == (ret_value = H5P_get_driver_info(plist))) HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get driver info") @@ -914,73 +830,35 @@ done: * to retrieve VFD file handle. * * Return: Success: Non-negative value. - * * Failure: Negative value. * * Programmer: Raymond Lu * Sep 17, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value = SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "ih", fapl_id, offset); /* Get the plist structure */ if(H5P_DEFAULT == fapl_id) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list"); - if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); - /* Set values */ - if((ret_value=H5P_set_family_offset(plist, offset)) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set family offset"); - -done: - FUNC_LEAVE_API(ret_value) -} - - -/*------------------------------------------------------------------------- - * Function: H5P_set_family_offset - * - * Purpose: Set offset for family driver. Private function for - * H5Pset_family_offset - * - * Return: Success: Non-negative value. - * - * Failure: Negative value. - * - * Programmer: Raymond Lu - * Sep 17, 2002 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5P_set_family_offset(H5P_genplist_t *plist, hsize_t offset) -{ - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list") + if(NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - if( TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { - if(H5P_set(plist, H5F_ACS_FAMILY_OFFSET_NAME, &offset) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET,FAIL,"can't set offset for family file"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access or data transfer property list"); - } + /* Set value */ + if(H5P_set(plist, H5F_ACS_FAMILY_OFFSET_NAME, &offset) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set offset for family file") done: - FUNC_LEAVE_NOAPI(ret_value) -} + FUNC_LEAVE_API(ret_value) +} /* end H5Pset_family_offset() */ /*------------------------------------------------------------------------- @@ -991,73 +869,37 @@ done: * to retrieve VFD file handle. * * Return: Success: Non-negative value. - * * Failure: Negative value. * * Programmer: Raymond Lu * Sep 17, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value = SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*h", fapl_id, offset); /* Get the plist structure */ if(H5P_DEFAULT == fapl_id) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list"); - if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); - /* Set values */ - if((ret_value=H5P_get_family_offset(plist, offset)) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't get family offset"); - -done: - FUNC_LEAVE_API(ret_value) -} - - -/*------------------------------------------------------------------------- - * Function: H5P_get_family_offset - * - * Purpose: Get offset for family driver. Private function for - * H5Pget_family_offset - * - * Return: Success: Non-negative value. - * - * Failure: Negative value. - * - * Programmer: Raymond Lu - * Sep 17, 2002 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5P_get_family_offset(H5P_genplist_t *plist, hsize_t *offset) -{ - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list") + if(NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - if( TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { + /* Get value */ + if(offset) { if(H5P_get(plist, H5F_ACS_FAMILY_OFFSET_NAME, offset) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET,FAIL,"can't set offset for family file"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access or data transfer property list"); - } + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set offset for family file") + } /* end if */ done: - FUNC_LEAVE_NOAPI(ret_value) -} + FUNC_LEAVE_API(ret_value) +} /* end H5Pget_family_offset() */ /*------------------------------------------------------------------------- @@ -1068,14 +910,11 @@ done: * to retrieve VFD file handle. * * Return: Success: Non-negative value. - * * Failure: Negative value. * * Programmer: Raymond Lu * Sep 17, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t @@ -1089,52 +928,17 @@ H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type) /* Get the plist structure */ if(H5P_DEFAULT == fapl_id) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list"); - if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); - /* Set values */ - if((ret_value=H5P_set_multi_type(plist, type)) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set data type for multi driver"); - -done: - FUNC_LEAVE_API(ret_value) -} - - -/*------------------------------------------------------------------------- - * Function: H5P_set_multi_type - * - * Purpose: Set data type for multi file driver. Private function for - * H5Pset_multi_type. - * - * Return: Success: Non-negative value. - * - * Failure: Negative value. - * - * Programmer: Raymond Lu - * Sep 17, 2002 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5P_set_multi_type(H5P_genplist_t *plist, H5FD_mem_t type) -{ - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list") + if(NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - if( TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { - if(H5P_set(plist, H5F_ACS_MULTI_TYPE_NAME, &type) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET,FAIL,"can't set type for multi driver"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access or data transfer property list"); - } + /* Set value */ + if(H5P_set(plist, H5F_ACS_MULTI_TYPE_NAME, &type) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set type for multi driver") done: - FUNC_LEAVE_NOAPI(ret_value) -} + FUNC_LEAVE_API(ret_value) +} /* end H5Pset_multi_type() */ /*------------------------------------------------------------------------- @@ -1145,73 +949,37 @@ done: * to retrieve VFD file handle. * * Return: Success: Non-negative value. - * * Failure: Negative value. * * Programmer: Raymond Lu * Sep 17, 2002 * - * Modifications: - * *------------------------------------------------------------------------- */ herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type) { H5P_genplist_t *plist; /* Property list pointer */ - herr_t ret_value = SUCCEED; /* return value */ + herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) H5TRACE2("e", "i*Mt", fapl_id, type); /* Get the plist structure */ if(H5P_DEFAULT == fapl_id) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list"); - if(NULL == (plist = H5P_object_verify(fapl_id,H5P_FILE_ACCESS))) - HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID"); - /* Set values */ - if((ret_value=H5P_get_multi_type(plist, type)) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't get data type for multi driver"); - -done: - FUNC_LEAVE_API(ret_value) -} - - -/*------------------------------------------------------------------------- - * Function: H5P_get_multi_type - * - * Purpose: Get data type for multi file driver. Private function for - * H5Pget_multi_type. - * - * Return: Success: Non-negative value. - * - * Failure: Negative value. - * - * Programmer: Raymond Lu - * Sep 17, 2002 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static herr_t -H5P_get_multi_type(H5P_genplist_t *plist, H5FD_mem_t *type) -{ - herr_t ret_value = SUCCEED; - - FUNC_ENTER_NOAPI(FAIL) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "can't modify default property list") + if(NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS))) + HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID") - if( TRUE == H5P_isa_class(plist->plist_id, H5P_FILE_ACCESS) ) { - if(H5P_get(plist, H5F_ACS_MULTI_TYPE_NAME, type) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTSET,FAIL,"can't get type for multi driver"); - } else { - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list"); - } + /* Get value */ + if(type) { + if(H5P_get(plist, H5F_ACS_MULTI_TYPE_NAME, type) < 0) + HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't get type for multi driver") + } /* end if */ done: - FUNC_LEAVE_NOAPI(ret_value) -} + FUNC_LEAVE_API(ret_value) +} /* end H5Pget_multi_type() */ /*------------------------------------------------------------------------- @@ -2493,12 +2261,13 @@ done: herr_t H5P_file_image_info_copy(const char UNUSED *name, size_t UNUSED size, void *value) { - H5FD_file_image_info_t *info; /* Image info struct */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT if(value) { + H5FD_file_image_info_t *info; /* Image info struct */ + info = (H5FD_file_image_info_t *)value; /* verify file image field consistancy */ @@ -2532,16 +2301,17 @@ H5P_file_image_info_copy(const char UNUSED *name, size_t UNUSED size, void *valu else HDmemcpy(info->buffer, old_buffer, info->size); } /* end if */ - } /* end if */ - /* Copy udata if it exists */ - if(info->callbacks.udata) { - void *old_udata = info->callbacks.udata; + /* Copy udata if it exists */ + if(info->callbacks.udata) { + void *old_udata = info->callbacks.udata; + + if(NULL == info->callbacks.udata_copy) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "udata_copy not defined") - if(NULL == info->callbacks.udata_copy) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "udata_copy not defined") + info->callbacks.udata = info->callbacks.udata_copy(old_udata); + } /* end if */ - info->callbacks.udata = info->callbacks.udata_copy(old_udata); } /* end if */ done: @@ -2566,32 +2336,33 @@ done: herr_t H5P_file_image_info_close(const char UNUSED *name, size_t UNUSED size, void *value) { - H5FD_file_image_info_t info; /* Image info struct */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT if(value) { - info = *(H5FD_file_image_info_t *)value; + H5FD_file_image_info_t *info; /* Image info struct */ + + info = (H5FD_file_image_info_t *)value; - if(info.buffer != NULL && info.size > 0) { + if(info->buffer != NULL && info->size > 0) { /* Free buffer */ - if(info.callbacks.image_free) { - if(info.callbacks.image_free(info.buffer, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE, - info.callbacks.udata) < 0) + if(info->callbacks.image_free) { + if(info->callbacks.image_free(info->buffer, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE, + info->callbacks.udata) < 0) HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "image_free callback failed") } /* end if */ else - H5MM_xfree(info.buffer); + H5MM_xfree(info->buffer); } /* end if */ - } /* end if */ - /* Free udata if it exists */ - if(info.callbacks.udata) { - if(NULL == info.callbacks.udata_free) - HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "udata_free not defined") - if(info.callbacks.udata_free(info.callbacks.udata) < 0) - HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "udata_free callback failed") + /* Free udata if it exists */ + if(info->callbacks.udata) { + if(NULL == info->callbacks.udata_free) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "udata_free not defined") + if(info->callbacks.udata_free(info->callbacks.udata) < 0) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTFREE, FAIL, "udata_free callback failed") + } /* end if */ } /* end if */ done: diff --git a/src/H5Pfcpl.c b/src/H5Pfcpl.c index 2e8cf1e..cd6a7cd 100644 --- a/src/H5Pfcpl.c +++ b/src/H5Pfcpl.c @@ -106,6 +106,7 @@ static herr_t H5P_fcrt_reg_prop(H5P_genclass_t *pclass); /* File creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_FCRT[1] = {{ "file create", /* Class name for debugging */ + H5P_TYPE_FILE_CREATE, /* Class type */ &H5P_CLS_GROUP_CREATE_g, /* Parent class ID */ &H5P_CLS_FILE_CREATE_g, /* Pointer to class ID */ &H5P_LST_FILE_CREATE_g, /* Pointer to default property list ID */ @@ -163,49 +164,49 @@ H5P_fcrt_reg_prop(H5P_genclass_t *pclass) /* Register the user block size */ if(H5P_register_real(pclass, H5F_CRT_USER_BLOCK_NAME, H5F_CRT_USER_BLOCK_SIZE, &userblock_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the 1/2 rank for symbol table leaf nodes */ if(H5P_register_real(pclass, H5F_CRT_SYM_LEAF_NAME, H5F_CRT_SYM_LEAF_SIZE, &sym_leaf_k, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the 1/2 rank for btree internal nodes */ if(H5P_register_real(pclass, H5F_CRT_BTREE_RANK_NAME, H5F_CRT_BTREE_RANK_SIZE, btree_k, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the byte number for an address */ if(H5P_register_real(pclass, H5F_CRT_ADDR_BYTE_NUM_NAME, H5F_CRT_ADDR_BYTE_NUM_SIZE, &sizeof_addr, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the byte number for object size */ if(H5P_register_real(pclass, H5F_CRT_OBJ_BYTE_NUM_NAME, H5F_CRT_OBJ_BYTE_NUM_SIZE, &sizeof_size, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the superblock version number */ if(H5P_register_real(pclass, H5F_CRT_SUPER_VERS_NAME, H5F_CRT_SUPER_VERS_SIZE, &superblock_ver, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the shared OH message information */ if(H5P_register_real(pclass,H5F_CRT_SHMSG_NINDEXES_NAME, H5F_CRT_SHMSG_NINDEXES_SIZE, &num_sohm_indexes,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") if(H5P_register_real(pclass,H5F_CRT_SHMSG_INDEX_TYPES_NAME, H5F_CRT_SHMSG_INDEX_TYPES_SIZE, &sohm_index_flags,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") if(H5P_register_real(pclass,H5F_CRT_SHMSG_INDEX_MINSIZE_NAME, H5F_CRT_SHMSG_INDEX_MINSIZE_SIZE, &sohm_index_minsizes,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the shared OH cutoff size information */ if(H5P_register_real(pclass,H5F_CRT_SHMSG_LIST_MAX_NAME, H5F_CRT_SHMSG_LIST_MAX_SIZE, &sohm_list_max,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") if(H5P_register_real(pclass,H5F_CRT_SHMSG_BTREE_MIN_NAME, H5F_CRT_SHMSG_BTREE_MIN_SIZE, &sohm_btree_min,NULL,NULL,NULL,NULL,NULL,NULL,NULL)<0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the file space handling strategy */ if(H5P_register_real(pclass, H5F_CRT_FILE_SPACE_STRATEGY_NAME, H5F_CRT_FILE_SPACE_STRATEGY_SIZE, &file_space_strategy, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the free space section threshold */ if(H5P_register_real(pclass, H5F_CRT_FREE_SPACE_THRESHOLD_NAME, H5F_CRT_FREE_SPACE_THRESHOLD_SIZE, &free_space_threshold, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5P_fcrt_reg_prop() */ diff --git a/src/H5Pfmpl.c b/src/H5Pfmpl.c index 7828fb2..0158bf1 100644 --- a/src/H5Pfmpl.c +++ b/src/H5Pfmpl.c @@ -74,6 +74,7 @@ static herr_t H5P_fmnt_reg_prop(H5P_genclass_t *pclass); /* File mount property list class library initialization object */ const H5P_libclass_t H5P_CLS_FMNT[1] = {{ "file mount", /* Class name for debugging */ + H5P_TYPE_FILE_MOUNT, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_FILE_MOUNT_g, /* Pointer to class ID */ &H5P_LST_FILE_MOUNT_g, /* Pointer to default property list ID */ diff --git a/src/H5Pgcpl.c b/src/H5Pgcpl.c index 983929d..737976e 100644 --- a/src/H5Pgcpl.c +++ b/src/H5Pgcpl.c @@ -68,6 +68,7 @@ static herr_t H5P_gcrt_reg_prop(H5P_genclass_t *pclass); /* Group creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_GCRT[1] = {{ "group create", /* Class name for debugging */ + H5P_TYPE_GROUP_CREATE, /* Class type */ &H5P_CLS_OBJECT_CREATE_g, /* Parent class ID */ &H5P_CLS_GROUP_CREATE_g, /* Pointer to class ID */ &H5P_LST_GROUP_CREATE_g, /* Pointer to default property list ID */ diff --git a/src/H5Pint.c b/src/H5Pint.c index a403443..b2d5860 100644 --- a/src/H5Pint.c +++ b/src/H5Pint.c @@ -132,6 +132,7 @@ hid_t H5P_LST_LINK_ACCESS_g = FAIL; /* Root property list class library initialization object */ const H5P_libclass_t H5P_CLS_ROOT[1] = {{ "root", /* Class name for debugging */ + H5P_TYPE_ROOT, /* Class type */ NULL, /* Parent class ID */ &H5P_CLS_ROOT_g, /* Pointer to class ID */ NULL, /* Pointer to default property list ID */ @@ -148,6 +149,7 @@ const H5P_libclass_t H5P_CLS_ROOT[1] = {{ /* (move to proper source code file when used for real) */ const H5P_libclass_t H5P_CLS_GACC[1] = {{ "group access", /* Class name for debugging */ + H5P_TYPE_GROUP_ACCESS, /* Class type */ &H5P_CLS_LINK_ACCESS_g, /* Parent class ID */ &H5P_CLS_GROUP_ACCESS_g, /* Pointer to class ID */ &H5P_LST_GROUP_ACCESS_g, /* Pointer to default property list ID */ @@ -164,6 +166,7 @@ const H5P_libclass_t H5P_CLS_GACC[1] = {{ /* (move to proper source code file when used for real) */ const H5P_libclass_t H5P_CLS_TCRT[1] = {{ "datatype create", /* Class name for debugging */ + H5P_TYPE_DATATYPE_CREATE, /* Class type */ &H5P_CLS_OBJECT_CREATE_g, /* Parent class ID */ &H5P_CLS_DATATYPE_CREATE_g, /* Pointer to class ID */ &H5P_LST_DATATYPE_CREATE_g, /* Pointer to default property list ID */ @@ -180,6 +183,7 @@ const H5P_libclass_t H5P_CLS_TCRT[1] = {{ /* (move to proper source code file when used for real) */ const H5P_libclass_t H5P_CLS_TACC[1] = {{ "datatype access", /* Class name for debugging */ + H5P_TYPE_DATATYPE_ACCESS, /* Class type */ &H5P_CLS_LINK_ACCESS_g, /* Parent class ID */ &H5P_CLS_DATATYPE_ACCESS_g, /* Pointer to class ID */ &H5P_LST_DATATYPE_ACCESS_g, /* Pointer to default property list ID */ @@ -433,7 +437,7 @@ H5P_init_interface(void) } /* end if */ /* Allocate the new class */ - if(NULL == (new_pclass = H5P_create_class(par_pclass, lib_class->name, 1, lib_class->create_func, lib_class->create_data, lib_class->copy_func, lib_class->copy_data, lib_class->close_func, lib_class->close_data))) + if(NULL == (new_pclass = H5P_create_class(par_pclass, lib_class->name, lib_class->type, lib_class->create_func, lib_class->create_data, lib_class->copy_func, lib_class->copy_data, lib_class->close_func, lib_class->close_data))) HGOTO_ERROR(H5E_PLIST, H5E_CANTINIT, FAIL, "class initialization failed") /* Call routine to register properties for class */ @@ -599,11 +603,11 @@ H5P_copy_pclass(H5P_genclass_t *pclass) */ /* Create the new property list class */ - if(NULL==(new_pclass=H5P_create_class(pclass->parent, pclass->name, 0, pclass->create_func, pclass->create_data, pclass->copy_func, pclass->copy_data, pclass->close_func, pclass->close_data))) + if(NULL == (new_pclass = H5P_create_class(pclass->parent, pclass->name, pclass->type, pclass->create_func, pclass->create_data, pclass->copy_func, pclass->copy_data, pclass->close_func, pclass->close_data))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCREATE, NULL, "unable to create property list class") /* Copy the properties registered for this class */ - if(pclass->nprops>0) { + if(pclass->nprops > 0) { H5SL_node_t *curr_node; /* Current node in skip list */ /* Walk through the properties in the old class */ @@ -1092,7 +1096,7 @@ done: /*-------------------------------------------------------------------------- NAME - H5P_find_prop_plist + H5P__find_prop_plist PURPOSE Internal routine to check for a property in a property list's skip list USAGE @@ -1108,12 +1112,12 @@ done: EXAMPLES REVISION LOG --------------------------------------------------------------------------*/ -static H5P_genprop_t * -H5P_find_prop_plist(H5P_genplist_t *plist, const char *name) +H5P_genprop_t * +H5P__find_prop_plist(H5P_genplist_t *plist, const char *name) { H5P_genprop_t *ret_value; /* Property pointer return value */ - FUNC_ENTER_NOAPI_NOINIT + FUNC_ENTER_PACKAGE HDassert(plist); HDassert(name); @@ -1147,7 +1151,7 @@ H5P_find_prop_plist(H5P_genplist_t *plist, const char *name) done: FUNC_LEAVE_NOAPI(ret_value) -} /* H5P_find_prop_plist() */ +} /* H5P__find_prop_plist() */ /*-------------------------------------------------------------------------- @@ -1448,11 +1452,11 @@ H5P_open_class_path_cb(void *_obj, hid_t UNUSED id, void *_key) PURPOSE Internal routine to create a new property list class. USAGE - H5P_genclass_t H5P_create_class(par_class, name, internal, + H5P_genclass_t H5P_create_class(par_class, name, type, cls_create, create_data, cls_close, close_data) H5P_genclass_t *par_class; IN: Pointer to parent class const char *name; IN: Name of class we are creating - hbool_t internal; IN: Whether this is an internal class or not + H5P_plist_type_t type; IN: Type of class we are creating H5P_cls_create_func_t; IN: The callback function to call when each property list in this class is created. void *create_data; IN: Pointer to user data to pass along to class @@ -1476,7 +1480,7 @@ H5P_open_class_path_cb(void *_obj, hid_t UNUSED id, void *_key) REVISION LOG --------------------------------------------------------------------------*/ H5P_genclass_t * -H5P_create_class(H5P_genclass_t *par_class, const char *name, hbool_t internal, +H5P_create_class(H5P_genclass_t *par_class, const char *name, H5P_plist_type_t type, H5P_cls_create_func_t cls_create, void *create_data, H5P_cls_copy_func_t cls_copy, void *copy_data, H5P_cls_close_func_t cls_close, void *close_data) @@ -1489,7 +1493,7 @@ H5P_create_class(H5P_genclass_t *par_class, const char *name, hbool_t internal, HDassert(name); /* Allow internal classes to break some rules */ /* (This allows the root of the tree to be created with this routine -QAK) */ - if(!internal) + if(type == H5P_TYPE_USER) HDassert(par_class); /* Allocate room for the class */ @@ -1500,11 +1504,11 @@ H5P_create_class(H5P_genclass_t *par_class, const char *name, hbool_t internal, pclass->parent = par_class; if(NULL == (pclass->name = H5MM_xstrdup(name))) HGOTO_ERROR(H5E_PLIST, H5E_CANTALLOC, NULL, "propery list class name allocation failed") + pclass->type = type; pclass->nprops = 0; /* Classes are created without properties initially */ pclass->plists = 0; /* No properties lists of this class yet */ pclass->classes = 0; /* No classes derived from this class yet */ pclass->ref_count = 1; /* This is the first reference to the new class */ - pclass->internal = internal; pclass->deleted = FALSE; /* Not deleted yet... :-) */ pclass->revision = H5P_GET_NEXT_REV; /* Get a revision number for the class */ @@ -2141,7 +2145,7 @@ H5P_register(H5P_genclass_t **ppclass, const char *name, size_t size, */ if(pclass->plists > 0 || pclass->classes > 0) { if(NULL == (new_class = H5P_create_class(pclass->parent, pclass->name, - pclass->internal, pclass->create_func, pclass->create_data, + pclass->type, pclass->create_func, pclass->create_data, pclass->copy_func, pclass->copy_data, pclass->close_func, pclass->close_data))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCOPY, FAIL, "can't copy class") @@ -2711,11 +2715,11 @@ H5P_get_size_plist(H5P_genplist_t *plist, const char *name, size_t *size) HDassert(size); /* Find property */ - if((prop=H5P_find_prop_plist(plist,name)) == NULL) + if(NULL == (prop = H5P__find_prop_plist(plist, name))) HGOTO_ERROR(H5E_PLIST, H5E_NOTFOUND, FAIL, "property doesn't exist") /* Get property size */ - *size=prop->size; + *size = prop->size; done: FUNC_LEAVE_NOAPI(ret_value) @@ -3032,9 +3036,9 @@ H5P_cmp_class(const H5P_genclass_t *pclass1, const H5P_genclass_t *pclass2) if(pclass1->ref_count < pclass2->ref_count) HGOTO_DONE(-1); if(pclass1->ref_count > pclass2->ref_count) HGOTO_DONE(1); - /* Check whether they are internal or not */ - if(pclass1->internal < pclass2->internal) HGOTO_DONE(-1); - if(pclass1->internal > pclass2->internal) HGOTO_DONE(1); + /* Check the property list types */ + if(pclass1->type < pclass2->type) HGOTO_DONE(-1); + if(pclass1->type > pclass2->type) HGOTO_DONE(1); /* Check whether they are deleted or not */ if(pclass1->deleted < pclass2->deleted) HGOTO_DONE(-1); @@ -3438,8 +3442,11 @@ H5P__iterate_plist_pclass_cb(void *_item, void *_key, void *_udata) PURPOSE Internal routine to iterate over the properties in a property list USAGE - int H5P_iterate_plist(plist_id, idx, cb_func, iter_data) - hid_t plist_id; IN: ID of property list to iterate over + int H5P_iterate_plist(plist, iter_all_prop, idx, cb_func, iter_data) + const H5P_genplist_t *plist; IN: Property list to iterate over + hbool_t iter_all_prop; IN: Whether to iterate over all properties + (TRUE), or just non-default (i.e. changed) + properties (FALSE). int *idx; IN/OUT: Index of the property to begin with H5P_iterate_t cb_func; IN: Function pointer to function to be called with each property iterated over. @@ -3484,10 +3491,10 @@ iteration, the function's behavior is undefined. REVISION LOG --------------------------------------------------------------------------*/ int -H5P_iterate_plist(hid_t plist_id, int *idx, H5P_iterate_int_t cb_func, void *udata) +H5P_iterate_plist(const H5P_genplist_t *plist, hbool_t iter_all_prop, int *idx, + H5P_iterate_int_t cb_func, void *udata) { H5P_genclass_t *tclass; /* Temporary class pointer */ - H5P_genplist_t *plist; /* Property list pointer */ H5P_iter_plist_ud_t udata_int; /* User data for skip list iterator */ H5SL_t *seen = NULL; /* Skip list to hold names of properties already seen */ int curr_idx = 0; /* Current iteration index */ @@ -3495,13 +3502,11 @@ H5P_iterate_plist(hid_t plist_id, int *idx, H5P_iterate_int_t cb_func, void *uda FUNC_ENTER_NOAPI_NOINIT + /* Sanity check */ + HDassert(plist); HDassert(idx); HDassert(cb_func); - /* Get the property list object */ - if(NULL == (plist = (H5P_genplist_t *)H5I_object_verify(plist_id, H5I_GENPROP_LST))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list") - /* Create the skip list to hold names of properties already seen */ if(NULL == (seen = H5SL_create(H5SL_TYPE_STR, NULL))) HGOTO_ERROR(H5E_PLIST, H5E_CANTCREATE, FAIL, "can't create skip list for seen properties") @@ -3520,17 +3525,20 @@ H5P_iterate_plist(hid_t plist_id, int *idx, H5P_iterate_int_t cb_func, void *uda if(ret_value != 0) HGOTO_DONE(ret_value); - /* Walk up the class hiearchy */ - tclass = plist->pclass; - while(tclass != NULL) { - /* Iterate over properties in property list class */ - ret_value = H5SL_iterate(tclass->props, H5P__iterate_plist_pclass_cb, &udata_int); - if(ret_value != 0) - HGOTO_DONE(ret_value); + /* Check for iterating over all properties, or just non-default ones */ + if(iter_all_prop) { + /* Walk up the class hiearchy */ + tclass = plist->pclass; + while(tclass != NULL) { + /* Iterate over properties in property list class */ + ret_value = H5SL_iterate(tclass->props, H5P__iterate_plist_pclass_cb, &udata_int); + if(ret_value != 0) + HGOTO_DONE(ret_value); - /* Go up to parent class */ - tclass = tclass->parent; - } /* end while */ + /* Go up to parent class */ + tclass = tclass->parent; + } /* end while */ + } /* end if */ done: /* Set the index we stopped at */ @@ -3601,8 +3609,8 @@ done: PURPOSE Internal routine to iterate over the properties in a property class USAGE - herr_t H5P_iterate_pclass(pclass_id, idx, cb_func, iter_data) - hid_t pclass_id; IN: ID of property class to iterate over + herr_t H5P_iterate_pclass(pclass, idx, cb_func, iter_data) + const H5P_genpclass_t *pclass; IN: Property list class to iterate over int *idx; IN/OUT: Index of the property to begin with H5P_iterate_t cb_func; IN: Function pointer to function to be called with each property iterated over. @@ -3647,22 +3655,20 @@ iteration, the function's behavior is undefined. REVISION LOG --------------------------------------------------------------------------*/ int -H5P_iterate_pclass(hid_t pclass_id, int *idx, H5P_iterate_int_t cb_func, void *udata) +H5P_iterate_pclass(const H5P_genclass_t *pclass, int *idx, + H5P_iterate_int_t cb_func, void *udata) { - H5P_genclass_t *pclass; /* Property list pointer */ H5P_iter_pclass_ud_t udata_int; /* User data for skip list iterator */ int curr_idx = 0; /* Current iteration index */ int ret_value = 0; /* Return value */ FUNC_ENTER_NOAPI_NOINIT + /* Sanity check */ + HDassert(pclass); HDassert(idx); HDassert(cb_func); - /* Get the property list object */ - if(NULL == (pclass = (H5P_genclass_t *)H5I_object_verify(pclass_id, H5I_GENPROP_CLS))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property class") - /* Set up iterator callback info */ udata_int.cb_func = cb_func; udata_int.udata = udata; @@ -4190,13 +4196,13 @@ H5P_copy_prop_plist(hid_t dst_id, hid_t src_id, const char *name) HGOTO_ERROR(H5E_PLIST, H5E_NOTFOUND, FAIL, "property object doesn't exist") /* If the property exists in the destination alread */ - if(H5P_find_prop_plist(dst_plist,name)!=NULL) { + if(NULL != H5P__find_prop_plist(dst_plist, name)) { /* Delete the property from the destination list, calling the 'close' callback if necessary */ if(H5P_remove(dst_id,dst_plist,name) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTDELETE, FAIL, "unable to remove property") /* Get the pointer to the source property */ - prop=H5P_find_prop_plist(src_plist,name); + prop = H5P__find_prop_plist(src_plist, name); /* Make a copy of the source property */ if((new_prop=H5P_dup_prop(prop,H5P_PROP_WITHIN_LIST)) == NULL) @@ -4218,7 +4224,7 @@ H5P_copy_prop_plist(hid_t dst_id, hid_t src_id, const char *name) /* If not, get the information required to do an H5Pinsert2 with the property into the destination list */ else { /* Get the pointer to the source property */ - prop = H5P_find_prop_plist(src_plist, name); + prop = H5P__find_prop_plist(src_plist, name); /* Create property object from parameters */ if(NULL == (new_prop = H5P_create_prop(prop->name, prop->size, H5P_PROP_WITHIN_LIST, prop->value, diff --git a/src/H5Plapl.c b/src/H5Plapl.c index 6c80493..8d8ee15 100644 --- a/src/H5Plapl.c +++ b/src/H5Plapl.c @@ -53,6 +53,7 @@ #define H5L_ACS_ELINK_PREFIX_DEF NULL /*default is no prefix */ #define H5L_ACS_ELINK_PREFIX_DEL H5P_lacc_elink_pref_del #define H5L_ACS_ELINK_PREFIX_COPY H5P_lacc_elink_pref_copy +#define H5L_ACS_ELINK_PREFIX_CMP H5P_lacc_elink_pref_cmp #define H5L_ACS_ELINK_PREFIX_CLOSE H5P_lacc_elink_pref_close /* Definitions for setting fapl of external link access */ @@ -60,6 +61,7 @@ #define H5L_ACS_ELINK_FAPL_DEF H5P_DEFAULT #define H5L_ACS_ELINK_FAPL_DEL H5P_lacc_elink_fapl_del #define H5L_ACS_ELINK_FAPL_COPY H5P_lacc_elink_fapl_copy +#define H5L_ACS_ELINK_FAPL_CMP H5P_lacc_elink_fapl_cmp #define H5L_ACS_ELINK_FAPL_CLOSE H5P_lacc_elink_fapl_close /* Definitions for file access flags for external link traversal */ @@ -70,6 +72,7 @@ #define H5L_ACS_ELINK_CB_SIZE sizeof(H5L_elink_cb_t) #define H5L_ACS_ELINK_CB_DEF {NULL,NULL} + /******************/ /* Local Typedefs */ /******************/ @@ -90,10 +93,11 @@ static herr_t H5P_lacc_reg_prop(H5P_genclass_t *pclass); /* Property list callbacks */ static herr_t H5P_lacc_elink_pref_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P_lacc_elink_pref_copy(const char* name, size_t size, void* value); +static int H5P_lacc_elink_pref_cmp(const void *value1, const void *value2, size_t size); static herr_t H5P_lacc_elink_pref_close(const char* name, size_t size, void* value); - static herr_t H5P_lacc_elink_fapl_del(hid_t prop_id, const char* name, size_t size, void* value); static herr_t H5P_lacc_elink_fapl_copy(const char* name, size_t size, void* value); +static int H5P_lacc_elink_fapl_cmp(const void *value1, const void *value2, size_t size); static herr_t H5P_lacc_elink_fapl_close(const char* name, size_t size, void* value); @@ -104,6 +108,7 @@ static herr_t H5P_lacc_elink_fapl_close(const char* name, size_t size, void* val /* Dataset creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_LACC[1] = {{ "link access", /* Class name for debugging */ + H5P_TYPE_LINK_ACCESS, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_LINK_ACCESS_g, /* Pointer to class ID */ &H5P_LST_LINK_ACCESS_g, /* Pointer to default property list ID */ @@ -162,11 +167,11 @@ H5P_lacc_reg_prop(H5P_genclass_t *pclass) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register property for external link prefix */ - if(H5P_register_real(pclass, H5L_ACS_ELINK_PREFIX_NAME, H5L_ACS_ELINK_PREFIX_SIZE, &elink_prefix, NULL, NULL, NULL, H5L_ACS_ELINK_PREFIX_DEL, H5L_ACS_ELINK_PREFIX_COPY, NULL, H5L_ACS_ELINK_PREFIX_CLOSE) < 0) + if(H5P_register_real(pclass, H5L_ACS_ELINK_PREFIX_NAME, H5L_ACS_ELINK_PREFIX_SIZE, &elink_prefix, NULL, NULL, NULL, H5L_ACS_ELINK_PREFIX_DEL, H5L_ACS_ELINK_PREFIX_COPY, H5L_ACS_ELINK_PREFIX_CMP, H5L_ACS_ELINK_PREFIX_CLOSE) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register fapl for link access */ - if(H5P_register_real(pclass, H5L_ACS_ELINK_FAPL_NAME, H5L_ACS_ELINK_FAPL_SIZE, &def_fapl_id, NULL, NULL, NULL, H5L_ACS_ELINK_FAPL_DEL, H5L_ACS_ELINK_FAPL_COPY, NULL, H5L_ACS_ELINK_FAPL_CLOSE) < 0) + if(H5P_register_real(pclass, H5L_ACS_ELINK_FAPL_NAME, H5L_ACS_ELINK_FAPL_SIZE, &def_fapl_id, NULL, NULL, NULL, H5L_ACS_ELINK_FAPL_DEL, H5L_ACS_ELINK_FAPL_COPY, H5L_ACS_ELINK_FAPL_CMP, H5L_ACS_ELINK_FAPL_CLOSE) < 0) HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register property for external link file access flags */ @@ -257,6 +262,49 @@ done: } /* end H5P_lacc_elink_fapl_copy() */ +/*------------------------------------------------------------------------- + * Function: H5P_lacc_elink_fapl_cmp + * + * Purpose: Callback routine which is called whenever the elink FAPL + * property in the link access property list is + * compared. + * + * Return: zero if VALUE1 and VALUE2 are equal, non zero otherwise. + * + * Programmer: Quincey Koziol + * Wednesday, August 15, 2012 + * + *------------------------------------------------------------------------- + */ +static int +H5P_lacc_elink_fapl_cmp(const void *value1, const void *value2, size_t UNUSED size) +{ + const hid_t *fapl1 = (const hid_t *)value1; + const hid_t *fapl2 = (const hid_t *)value2; + H5P_genplist_t *obj1, *obj2; /* Property lists to compare */ + int ret_value = 0; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Check for comparison with default value */ + if(*fapl1 == 0 && *fapl2 > 0) HGOTO_DONE(1); + if(*fapl1 > 0 && *fapl2 == 0) HGOTO_DONE(-1); + + /* Get the property list objects */ + obj1 = (H5P_genplist_t *)H5I_object(*fapl1); + obj2 = (H5P_genplist_t *)H5I_object(*fapl2); + + /* Check for NULL property lists */ + if(obj1 == NULL && obj2 != NULL) HGOTO_DONE(1); + if(obj1 != NULL && obj2 == NULL) HGOTO_DONE(-1); + if(obj1 && obj2) + ret_value = H5P_cmp_plist(obj1, obj2); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5P_lacc_elink_fapl_cmp() */ + + /*-------------------------------------------------------------------------- * Function: H5P_lacc_elink_fapl_close * @@ -343,6 +391,41 @@ H5P_lacc_elink_pref_copy(const char UNUSED *name, size_t UNUSED size, void *valu /*------------------------------------------------------------------------- + * Function: H5P_lacc_elink_pref_cmp + * + * Purpose: Callback routine which is called whenever the elink prefix + * property in the dataset creation property list is + * compared. + * + * Return: zero if VALUE1 and VALUE2 are equal, non zero otherwise. + * + * Programmer: Mohamad Chaarawi + * Thursday, November 3, 2011 + * + *------------------------------------------------------------------------- + */ +static int +H5P_lacc_elink_pref_cmp(const void *value1, const void *value2, size_t UNUSED size) +{ + const char *pref1 = *(const char * const *)value1; + const char *pref2 = *(const char * const *)value2; + int ret_value = 0; + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + if(NULL == pref1 && NULL != pref2) + HGOTO_DONE(1); + if(NULL != pref1 && NULL == pref2) + HGOTO_DONE(-1); + if(NULL != pref1 && NULL != pref2) + ret_value = HDstrcmp(pref1, pref2); + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5P_lacc_elink_pref_cmp() */ + + +/*------------------------------------------------------------------------- * Function: H5P_lacc_elink_pref_close * * Purpose: Frees memory used to store the external link prefix string @@ -815,3 +898,4 @@ done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_elink_cb() */ + diff --git a/src/H5Plcpl.c b/src/H5Plcpl.c index 60b4e37..b327df9 100644 --- a/src/H5Plcpl.c +++ b/src/H5Plcpl.c @@ -75,6 +75,7 @@ static herr_t H5P_lcrt_reg_prop(H5P_genclass_t *pclass); /* Link creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_LCRT[1] = {{ "link create", /* Class name for debugging */ + H5P_TYPE_LINK_CREATE, /* Class type */ &H5P_CLS_STRING_CREATE_g, /* Parent class ID */ &H5P_CLS_LINK_CREATE_g, /* Pointer to class ID */ &H5P_LST_LINK_CREATE_g, /* Pointer to default property list ID */ @@ -120,7 +121,7 @@ H5P_lcrt_reg_prop(H5P_genclass_t *pclass) /* Register create intermediate groups property */ if(H5P_register_real(pclass, H5L_CRT_INTERMEDIATE_GROUP_NAME, H5L_CRT_INTERMEDIATE_GROUP_SIZE, &intmd_group, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") done: FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Pocpl.c b/src/H5Pocpl.c index 7a52f11..024f79b 100644 --- a/src/H5Pocpl.c +++ b/src/H5Pocpl.c @@ -87,6 +87,7 @@ static int H5P_ocrt_pipeline_cmp(const void *value1, const void *value2, size_t /* Object creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_OCRT[1] = {{ "object create", /* Class name for debugging */ + H5P_TYPE_OBJECT_CREATE, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_OBJECT_CREATE_g, /* Pointer to class ID */ NULL, /* Pointer to default property list ID */ @@ -137,15 +138,15 @@ H5P_ocrt_reg_prop(H5P_genclass_t *pclass) /* Register max. compact attribute storage property */ if(H5P_register_real(pclass, H5O_CRT_ATTR_MAX_COMPACT_NAME, H5O_CRT_ATTR_MAX_COMPACT_SIZE, &attr_max_compact, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register min. dense attribute storage property */ if(H5P_register_real(pclass, H5O_CRT_ATTR_MIN_DENSE_NAME, H5O_CRT_ATTR_MIN_DENSE_SIZE, &attr_min_dense, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register object header flags property */ if(H5P_register_real(pclass, H5O_CRT_OHDR_FLAGS_NAME, H5O_CRT_OHDR_FLAGS_SIZE, &ohdr_flags, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register the pipeline property */ if(H5P_register_real(pclass, H5O_CRT_PIPELINE_NAME, H5O_CRT_PIPELINE_SIZE, &pline, NULL, NULL, NULL, NULL, NULL, H5O_CRT_PIPELINE_CMP, NULL) < 0) diff --git a/src/H5Pocpypl.c b/src/H5Pocpypl.c index 23f8e4b..adea906 100644 --- a/src/H5Pocpypl.c +++ b/src/H5Pocpypl.c @@ -91,6 +91,7 @@ static int H5P_ocpy_merge_comm_dt_list_cmp(const void *value1, const void *value /* Object copy property list class library initialization object */ const H5P_libclass_t H5P_CLS_OCPY[1] = {{ "object copy", /* Class name for debugging */ + H5P_TYPE_OBJECT_COPY, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_OBJECT_COPY_g, /* Pointer to class ID */ &H5P_LST_OBJECT_COPY_g, /* Pointer to default property list ID */ @@ -141,15 +142,15 @@ H5P_ocpy_reg_prop(H5P_genclass_t *pclass) /* Register copy options property */ if(H5P_register_real(pclass, H5O_CPY_OPTION_NAME, H5O_CPY_OPTION_SIZE, &ocpy_option, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register merge named dtype list property */ if(H5P_register_real(pclass, H5O_CPY_MERGE_COMM_DT_LIST_NAME, H5O_CPY_MERGE_COMM_DT_LIST_SIZE, &merge_comm_dtype_list, NULL, NULL, NULL, NULL, NULL, H5O_CPY_MERGE_COMM_DT_LIST_CMP, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") /* Register property for callback when completing the search for a matching named datatype from the named dtype list */ if(H5P_register_real(pclass, H5O_CPY_MCDT_SEARCH_CB_NAME, H5O_CPY_MCDT_SEARCH_CB_SIZE, &mcdt_cb, NULL, NULL, NULL, NULL, NULL, NULL, NULL) < 0) - HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") + HGOTO_ERROR(H5E_PLIST, H5E_CANTINSERT, FAIL, "can't insert property into class") done: FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5Ppkg.h b/src/H5Ppkg.h index 65d314e..803abfd 100644 --- a/src/H5Ppkg.h +++ b/src/H5Ppkg.h @@ -84,23 +84,23 @@ typedef struct H5P_genprop_t { /* Define structure to hold class information */ struct H5P_genclass_t { struct H5P_genclass_t *parent; /* Pointer to parent class */ - char *name; /* Name of property list class */ - size_t nprops; /* Number of properties in class */ + char *name; /* Name of property list class */ + H5P_plist_type_t type; /* Type of property */ + size_t nprops; /* Number of properties in class */ unsigned plists; /* Number of property lists that have been created since the last modification to the class */ unsigned classes; /* Number of classes that have been derived since the last modification to the class */ unsigned ref_count; /* Number of oustanding ID's open on this class object */ - hbool_t internal; /* Whether this class is internal to the library or not */ hbool_t deleted; /* Whether this class has been deleted and is waiting for dependent classes & proplists to close */ unsigned revision; /* Revision number of a particular class (global) */ - H5SL_t *props; /* Skip list containing properties */ + H5SL_t *props; /* Skip list containing properties */ /* Callback function pointers & info */ H5P_cls_create_func_t create_func; /* Function to call when a property list is created */ - void *create_data; /* Pointer to user data to pass along to create callback */ - H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */ - void *copy_data; /* Pointer to user data to pass along to copy callback */ - H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */ - void *close_data; /* Pointer to user data to pass along to close callback */ + void *create_data; /* Pointer to user data to pass along to create callback */ + H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */ + void *copy_data; /* Pointer to user data to pass along to copy callback */ + H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */ + void *close_data; /* Pointer to user data to pass along to close callback */ }; /* Define structure to hold property list information */ @@ -123,6 +123,7 @@ typedef herr_t (*H5P_reg_prop_func_t)(H5P_genclass_t *pclass); */ typedef struct H5P_libclass_t { const char *name; /* Class name */ + H5P_plist_type_t type; /* Class type */ hid_t const * const par_class_id; /* Pointer to global parent class property list class ID */ hid_t * const class_id; /* Pointer to global property list class ID */ @@ -152,7 +153,7 @@ typedef int (*H5P_iterate_int_t)(H5P_genprop_t *prop, void *udata); /* Private functions, not part of the publicly documented API */ H5_DLL H5P_genclass_t *H5P_create_class(H5P_genclass_t *par_class, - const char *name, unsigned internal, + const char *name, H5P_plist_type_t type, H5P_cls_create_func_t cls_create, void *create_data, H5P_cls_copy_func_t cls_copy, void *copy_data, H5P_cls_close_func_t cls_close, void *close_data); @@ -178,10 +179,10 @@ H5_DLL H5P_genclass_t *H5P_get_class(const H5P_genplist_t *plist); H5_DLL herr_t H5P_get_nprops_plist(const H5P_genplist_t *plist, size_t *nprops); H5_DLL int H5P_cmp_class(const H5P_genclass_t *pclass1, const H5P_genclass_t *pclass2); H5_DLL int H5P_cmp_plist(const H5P_genplist_t *plist1, const H5P_genplist_t *plist2); -H5_DLL int H5P_iterate_plist(hid_t plist_id, int *idx, H5P_iterate_int_t iter_func, - void *iter_data); -H5_DLL int H5P_iterate_pclass(hid_t pclass_id, int *idx, H5P_iterate_int_t iter_func, - void *iter_data); +H5_DLL int H5P_iterate_plist(const H5P_genplist_t *plist, hbool_t iter_all_prop, + int *idx, H5P_iterate_int_t iter_func, void *iter_data); +H5_DLL int H5P_iterate_pclass(const H5P_genclass_t *pclass, int *idx, + H5P_iterate_int_t iter_func, void *iter_data); H5_DLL herr_t H5P_copy_prop_plist(hid_t dst_id, hid_t src_id, const char *name); H5_DLL herr_t H5P_copy_prop_pclass(hid_t dst_id, hid_t src_id, const char *name); H5_DLL herr_t H5P_unregister(H5P_genclass_t *pclass, const char *name); @@ -192,6 +193,7 @@ H5_DLL herr_t H5P_close_class(void *_pclass); H5_DLL herr_t H5P_get_filter(const H5Z_filter_info_t *filter, unsigned int *flags, size_t *cd_nelmts, unsigned cd_values[], size_t namelen, char name[], unsigned *filter_config); +H5_DLL H5P_genprop_t *H5P__find_prop_plist(H5P_genplist_t *plist, const char *name); /* Testing functions */ #ifdef H5P_TESTING diff --git a/src/H5Pprivate.h b/src/H5Pprivate.h index ab3f1d0..849a533 100644 --- a/src/H5Pprivate.h +++ b/src/H5Pprivate.h @@ -42,6 +42,27 @@ typedef struct H5P_genplist_t H5P_genplist_t; typedef struct H5P_genclass_t H5P_genclass_t; +typedef enum H5P_plist_type_t { + H5P_TYPE_USER = 0, + H5P_TYPE_ROOT = 1, + H5P_TYPE_OBJECT_CREATE = 2, + H5P_TYPE_FILE_CREATE = 3, + H5P_TYPE_FILE_ACCESS = 4, + H5P_TYPE_DATASET_CREATE = 5, + H5P_TYPE_DATASET_ACCESS = 6, + H5P_TYPE_DATASET_XFER = 7, + H5P_TYPE_FILE_MOUNT = 8, + H5P_TYPE_GROUP_CREATE = 9, + H5P_TYPE_GROUP_ACCESS = 10, + H5P_TYPE_DATATYPE_CREATE = 11, + H5P_TYPE_DATATYPE_ACCESS = 12, + H5P_TYPE_STRING_CREATE = 13, + H5P_TYPE_ATTRIBUTE_CREATE = 14, + H5P_TYPE_OBJECT_COPY = 15, + H5P_TYPE_LINK_CREATE = 16, + H5P_TYPE_LINK_ACCESS = 17, + H5P_TYPE_MAX_TYPE +} H5P_plist_type_t; /*****************************/ /* Library Private Variables */ @@ -100,7 +121,7 @@ H5_DLL size_t H5P_peek_size_t(H5P_genplist_t *plist, const char *name); /* Private DCPL routines */ H5_DLL herr_t H5P_fill_value_defined(H5P_genplist_t *plist, H5D_fill_value_t *status); -H5_DLL herr_t H5P_get_fill_value(H5P_genplist_t *plist, const H5T_t *type, +H5_DLL herr_t H5P_get_fill_value(H5P_genplist_t *plist, H5T_t *type, void *value, hid_t dxpl_id); #endif /* _H5Pprivate_H */ diff --git a/src/H5Ppublic.h b/src/H5Ppublic.h index 654772a..fd75e86 100644 --- a/src/H5Ppublic.h +++ b/src/H5Ppublic.h @@ -153,6 +153,19 @@ typedef enum H5D_mpio_actual_io_mode_t { H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4 } H5D_mpio_actual_io_mode_t; +/* Broken collective IO property */ +typedef enum H5D_mpio_no_collective_cause_t { + H5D_MPIO_COLLECTIVE = 0x00, + H5D_MPIO_SET_INDEPENDENT = 0x01, + H5D_MPIO_DATATYPE_CONVERSION = 0x02, + H5D_MPIO_DATA_TRANSFORMS = 0x04, + H5D_MPIO_SET_MPIPOSIX = 0x08, + H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10, + H5D_MPIO_POINT_SELECTIONS = 0x20, + H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x40, + H5D_MPIO_FILTERS = 0x80 +} H5D_mpio_no_collective_cause_t; + /********************/ /* Public Variables */ /********************/ @@ -399,6 +412,7 @@ H5_DLL herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, voi #ifdef H5_HAVE_PARALLEL H5_DLL herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode); H5_DLL herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode); +H5_DLL herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, H5D_mpio_no_collective_cause_t *local_no_collective_cause, H5D_mpio_no_collective_cause_t *global_no_collective_cause); #endif /* H5_HAVE_PARALLEL */ /* Link creation property list (LCPL) routines */ diff --git a/src/H5Pstrcpl.c b/src/H5Pstrcpl.c index 188fdd2..8573985 100644 --- a/src/H5Pstrcpl.c +++ b/src/H5Pstrcpl.c @@ -73,6 +73,7 @@ static herr_t H5P_strcrt_reg_prop(H5P_genclass_t *pclass); /* String creation property list class library initialization object */ const H5P_libclass_t H5P_CLS_STRCRT[1] = {{ "string create", /* Class name for debugging */ + H5P_TYPE_STRING_CREATE, /* Class type */ &H5P_CLS_ROOT_g, /* Parent class ID */ &H5P_CLS_STRING_CREATE_g, /* Pointer to class ID */ NULL, /* Pointer to default property list ID */ diff --git a/src/H5Shyper.c b/src/H5Shyper.c index d9b306d..d88ac35 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -2784,7 +2784,7 @@ H5S_hyper_offset(const H5S_t *space, hsize_t *offset) FUNC_ENTER_NOAPI(FAIL) - HDassert(space); + HDassert(space && space->extent.rank>0); HDassert(offset); /* Start at linear offset 0 */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index 817b2f2..b758a92 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -643,7 +643,7 @@ H5S_point_copy(H5S_t *dst, const H5S_t *src, hbool_t UNUSED share_selection) } /* end while */ done: - if(ret_value < 0) { + if(ret_value < 0 && dst->select.sel_info.pnt_lst) { /* Traverse the (incomplete?) dst list, freeing all memory */ curr = dst->select.sel_info.pnt_lst->head; while(curr) { diff --git a/src/H5Sselect.c b/src/H5Sselect.c index 91aed1e..9a993a5 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -67,7 +67,7 @@ H5S_select_offset(H5S_t *space, const hssize_t *offset) /* Check args */ HDassert(space); - HDassert(space->extent.rank); + HDassert(0 < space->extent.rank && space->extent.rank <= H5S_MAX_RANK); HDassert(offset); /* Copy the offset over */ diff --git a/src/H5Tarray.c b/src/H5Tarray.c index 9986631..c73b934 100644 --- a/src/H5Tarray.c +++ b/src/H5Tarray.c @@ -194,7 +194,8 @@ H5T__array_create(H5T_t *base, unsigned ndims, const hsize_t dim[/* ndims */]) ret_value->shared->type = H5T_ARRAY; /* Copy the base type of the array */ - ret_value->shared->parent = H5T_copy(base, H5T_COPY_ALL); + if(NULL == (ret_value->shared->parent = H5T_copy(base, H5T_COPY_ALL))) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, NULL, "unable to copy base datatype") /* Set the array parameters */ ret_value->shared->u.array.ndims = ndims; diff --git a/src/H5Zscaleoffset.c b/src/H5Zscaleoffset.c index e6ae53e..1538765 100644 --- a/src/H5Zscaleoffset.c +++ b/src/H5Zscaleoffset.c @@ -45,7 +45,7 @@ static htri_t H5Z_can_apply_scaleoffset(hid_t dcpl_id, hid_t type_id, hid_t spac static enum H5Z_scaleoffset_t H5Z_scaleoffset_get_type(unsigned dtype_class, unsigned dtype_size, unsigned dtype_sign); static herr_t H5Z_scaleoffset_set_parms_fillval(H5P_genplist_t *dcpl_plist, - const H5T_t *type, enum H5Z_scaleoffset_t scale_type, unsigned cd_values[], + H5T_t *type, enum H5Z_scaleoffset_t scale_type, unsigned cd_values[], int need_convert, hid_t dxpl_id); static herr_t H5Z_set_local_scaleoffset(hid_t dcpl_id, hid_t type_id, hid_t space_id); static size_t H5Z_filter_scaleoffset(unsigned flags, size_t cd_nelmts, @@ -804,7 +804,7 @@ done: */ static herr_t H5Z_scaleoffset_set_parms_fillval(H5P_genplist_t *dcpl_plist, - const H5T_t *type, enum H5Z_scaleoffset_t scale_type, + H5T_t *type, enum H5Z_scaleoffset_t scale_type, unsigned cd_values[], int need_convert, hid_t dxpl_id) { herr_t ret_value = SUCCEED; /* Return value */ @@ -861,7 +861,7 @@ static herr_t H5Z_set_local_scaleoffset(hid_t dcpl_id, hid_t type_id, hid_t space_id) { H5P_genplist_t *dcpl_plist; /* Property list pointer */ - const H5T_t *type; /* Datatype */ + H5T_t *type; /* Datatype */ const H5S_t *ds; /* Dataspace */ unsigned flags; /* Filter flags */ size_t cd_nelmts = H5Z_SCALEOFFSET_USER_NPARMS; /* Number of filter parameters */ diff --git a/src/H5config.h.in b/src/H5config.h.in index a2b75df..fdbcd49 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -1,4 +1,4 @@ -/* src/H5config.h.in. Generated from configure.in by autoheader. */ +/* src/H5config.h.in. Generated from configure.ac by autoheader. */ /* Define if building universal (internal helper macro) */ #undef AC_APPLE_UNIVERSAL_BUILD diff --git a/src/H5private.h b/src/H5private.h index d30298f..7dfd349 100644 --- a/src/H5private.h +++ b/src/H5private.h @@ -94,13 +94,13 @@ /* * If a program may include both `time.h' and `sys/time.h' then - * TIME_WITH_SYS_TIME is defined (see AC_HEADER_TIME in configure.in). + * TIME_WITH_SYS_TIME is defined (see AC_HEADER_TIME in configure.ac). * On some older systems, `sys/time.h' includes `time.h' but `time.h' is not * protected against multiple inclusion, so programs should not explicitly * include both files. This macro is useful in programs that use, for example, * `struct timeval' or `struct timezone' as well as `struct tm'. It is best * used in conjunction with `HAVE_SYS_TIME_H', whose existence is checked - * by `AC_CHECK_HEADERS(sys/time.h)' in configure.in. + * by `AC_CHECK_HEADERS(sys/time.h)' in configure.ac. */ #if defined(H5_TIME_WITH_SYS_TIME) # include <sys/time.h> diff --git a/src/H5public.h b/src/H5public.h index b6ee623..193aae1 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -75,10 +75,10 @@ extern "C" { /* Version numbers */ #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 9 /* For minor interface/format changes */ -#define H5_VERS_RELEASE 124 /* For tweaks, bug-fixes, or development */ +#define H5_VERS_RELEASE 128 /* For tweaks, bug-fixes, or development */ #define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.9.124" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.9.128" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/src/H5trace.c b/src/H5trace.c index b711f40..2dab8ec 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -212,6 +212,7 @@ H5_trace(const double *returning, const char *func, const char *type, ...) if('[' == *type) { if('a' == type[1]) { asize_idx = (int)HDstrtol(type + 2, &rest, 10); + HDassert(0 <= asize_idx && asize_idx < (int) NELMTS(asize)); HDassert(']'==*rest); type = rest + 1; } else { @@ -534,6 +535,60 @@ H5_trace(const double *returning, const char *func, const char *type, ...) } /* end else */ break; + case 'n': + if(ptr) { + if(vp) + fprintf(out, "0x%lx", (unsigned long)vp); + else + fprintf(out, "NULL"); + } /* end if */ + else { + H5D_mpio_no_collective_cause_t nocol_cause_mode = (H5D_mpio_no_collective_cause_t)va_arg(ap, int); + + switch(nocol_cause_mode) { + case H5D_MPIO_COLLECTIVE: + fprintf(out, "H5D_MPIO_COLLECTIVE"); + break; + + case H5D_MPIO_SET_INDEPENDENT: + fprintf(out, "H5D_MPIO_SET_INDEPENDENT"); + break; + + case H5D_MPIO_DATATYPE_CONVERSION: + fprintf(out, "H5D_MPIO_DATATYPE_CONVERSION"); + break; + + case H5D_MPIO_DATA_TRANSFORMS: + fprintf(out, "H5D_MPIO_DATA_TRANSFORMS"); + break; + + case H5D_MPIO_SET_MPIPOSIX: + fprintf(out, "H5D_MPIO_SET_MPIPOSIX"); + break; + + case H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES: + fprintf(out, "H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES"); + break; + + case H5D_MPIO_POINT_SELECTIONS: + fprintf(out, "H5D_MPIO_POINT_SELECTIONS"); + break; + + case H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET: + fprintf(out, "H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET"); + break; + + case H5D_MPIO_FILTERS: + fprintf(out, "H5D_MPIO_FILTERS"); + break; + + default: + fprintf(out, "%ld", (long)nocol_cause_mode); + break; + } /* end switch */ + } /* end else */ + break; + case 'o': if(ptr) { if(vp) diff --git a/src/Makefile.in b/src/Makefile.in index fa003a9..a876365 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -36,6 +35,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -56,14 +72,16 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(include_HEADERS) $(srcdir)/H5config.h.in \ $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/libhdf5.settings.in $(top_srcdir)/config/commence.am \ + $(srcdir)/libhdf5.settings.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am \ $(top_srcdir)/config/lt_vers.am COPYING noinst_PROGRAMS = H5detect$(EXEEXT) H5make_libsettings$(EXEEXT) TESTS = subdir = src ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -91,6 +109,12 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(settingsdir)" \ "$(DESTDIR)$(includedir)" LTLIBRARIES = $(lib_LTLIBRARIES) @@ -148,9 +172,10 @@ am_libhdf5_la_OBJECTS = H5.lo H5checksum.lo H5dbg.lo H5system.lo \ H5Zdeflate.lo H5Zfletcher32.lo H5Znbit.lo H5Zshuffle.lo \ H5Zszip.lo H5Zscaleoffset.lo H5Ztrans.lo libhdf5_la_OBJECTS = $(am_libhdf5_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = libhdf5_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(libhdf5_la_LDFLAGS) $(LDFLAGS) -o $@ @@ -164,6 +189,18 @@ H5detect_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ H5make_libsettings_SOURCES = H5make_libsettings.c H5make_libsettings_OBJECTS = H5make_libsettings.$(OBJEXT) H5make_libsettings_LDADD = $(LDADD) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -174,32 +211,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(libhdf5_la_SOURCES) H5detect.c H5make_libsettings.c DIST_SOURCES = $(libhdf5_la_SOURCES) H5detect.c H5make_libsettings.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac DATA = $(settings_DATA) HEADERS = $(include_HEADERS) ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -217,12 +257,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -484,7 +521,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 114 +LT_VERS_REVISION = 118 LT_VERS_AGE = 0 H5detect_CFLAGS = -g $(AM_CFLAGS) @@ -594,6 +631,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -624,6 +665,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/lt_vers.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -635,10 +677,8 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): H5config.h: stamp-h1 - @if test ! -f $@; then \ - rm -f stamp-h1; \ - $(MAKE) $(AM_MAKEFLAGS) stamp-h1; \ - else :; fi + @if test ! -f $@; then rm -f stamp-h1; else :; fi + @if test ! -f $@; then $(MAKE) $(AM_MAKEFLAGS) stamp-h1; else :; fi stamp-h1: $(srcdir)/H5config.h.in $(top_builddir)/config.status @rm -f stamp-h1 @@ -654,7 +694,6 @@ libhdf5.settings: $(top_builddir)/config.status $(srcdir)/libhdf5.settings.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) @$(NORMAL_INSTALL) - test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)" @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ list2=; for p in $$list; do \ if test -f $$p; then \ @@ -662,6 +701,8 @@ install-libLTLIBRARIES: $(lib_LTLIBRARIES) else :; fi; \ done; \ test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ } @@ -677,13 +718,15 @@ uninstall-libLTLIBRARIES: clean-libLTLIBRARIES: -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) - @list='$(lib_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libhdf5.la: $(libhdf5_la_OBJECTS) $(libhdf5_la_DEPENDENCIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libhdf5.la: $(libhdf5_la_OBJECTS) $(libhdf5_la_DEPENDENCIES) $(EXTRA_libhdf5_la_DEPENDENCIES) $(AM_V_CCLD)$(libhdf5_la_LINK) -rpath $(libdir) $(libhdf5_la_OBJECTS) $(libhdf5_la_LIBADD) $(LIBS) clean-noinstPROGRAMS: @@ -694,10 +737,10 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -H5detect$(EXEEXT): $(H5detect_OBJECTS) $(H5detect_DEPENDENCIES) +H5detect$(EXEEXT): $(H5detect_OBJECTS) $(H5detect_DEPENDENCIES) $(EXTRA_H5detect_DEPENDENCIES) @rm -f H5detect$(EXEEXT) $(AM_V_CCLD)$(H5detect_LINK) $(H5detect_OBJECTS) $(H5detect_LDADD) $(LIBS) -H5make_libsettings$(EXEEXT): $(H5make_libsettings_OBJECTS) $(H5make_libsettings_DEPENDENCIES) +H5make_libsettings$(EXEEXT): $(H5make_libsettings_OBJECTS) $(H5make_libsettings_DEPENDENCIES) $(EXTRA_H5make_libsettings_DEPENDENCIES) @rm -f H5make_libsettings$(EXEEXT) $(AM_V_CCLD)$(LINK) $(H5make_libsettings_OBJECTS) $(H5make_libsettings_LDADD) $(LIBS) @@ -973,42 +1016,37 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< H5detect-H5detect.o: H5detect.c @am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -MT H5detect-H5detect.o -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='H5detect.c' object='H5detect-H5detect.o' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='H5detect.c' object='H5detect-H5detect.o' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c H5detect-H5detect.obj: H5detect.c @am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -MT H5detect-H5detect.obj -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='H5detect.c' object='H5detect-H5detect.obj' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='H5detect.c' object='H5detect-H5detect.obj' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) $(CFLAGS) -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi` mostlyclean-libtool: -rm -f *.lo @@ -1017,8 +1055,11 @@ clean-libtool: -rm -rf .libs _libs install-settingsDATA: $(settings_DATA) @$(NORMAL_INSTALL) - test -z "$(settingsdir)" || $(MKDIR_P) "$(DESTDIR)$(settingsdir)" @list='$(settings_DATA)'; test -n "$(settingsdir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(settingsdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(settingsdir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ echo "$$d$$p"; \ @@ -1032,13 +1073,14 @@ uninstall-settingsDATA: @$(NORMAL_UNINSTALL) @list='$(settings_DATA)'; test -n "$(settingsdir)" || list=; \ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ - test -n "$$files" || exit 0; \ - echo " ( cd '$(DESTDIR)$(settingsdir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(settingsdir)" && rm -f $$files + dir='$(DESTDIR)$(settingsdir)'; $(am__uninstall_files_from_dir) install-includeHEADERS: $(include_HEADERS) @$(NORMAL_INSTALL) - test -z "$(includedir)" || $(MKDIR_P) "$(DESTDIR)$(includedir)" @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(includedir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(includedir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ echo "$$d$$p"; \ @@ -1052,9 +1094,7 @@ uninstall-includeHEADERS: @$(NORMAL_UNINSTALL) @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ - test -n "$$files" || exit 0; \ - echo " ( cd '$(DESTDIR)$(includedir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(includedir)" && rm -f $$files + dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir) ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -1105,6 +1145,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -1157,10 +1211,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: -test -z "$(MOSTLYCLEANFILES)" || rm -f $(MOSTLYCLEANFILES) @@ -1250,19 +1309,20 @@ uninstall-am: uninstall-includeHEADERS uninstall-libLTLIBRARIES \ .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-generic clean-libLTLIBRARIES clean-libtool \ - clean-noinstPROGRAMS ctags distclean distclean-compile \ - distclean-generic distclean-hdr distclean-libtool \ - distclean-tags distdir dvi dvi-am html html-am info info-am \ - install install-am install-data install-data-am install-dvi \ - install-dvi-am install-exec install-exec-am install-html \ - install-html-am install-includeHEADERS install-info \ - install-info-am install-libLTLIBRARIES install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-settingsDATA \ - install-strip installcheck installcheck-am installdirs \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ - uninstall-am uninstall-includeHEADERS uninstall-libLTLIBRARIES \ + clean-noinstPROGRAMS cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-hdr \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am \ + install-includeHEADERS install-info install-info-am \ + install-libLTLIBRARIES install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-settingsDATA install-strip \ + installcheck installcheck-am installdirs maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-compile \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags uninstall uninstall-am \ + uninstall-includeHEADERS uninstall-libLTLIBRARIES \ uninstall-settingsDATA @@ -1352,7 +1412,7 @@ trace: $(libhdf5_la_SOURCES) # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -1378,7 +1438,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -1402,7 +1462,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -1412,7 +1472,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1502,7 +1562,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1532,7 +1592,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/test/Makefile.in b/test/Makefile.in index ddc481e..30bfc59 100644 --- a/test/Makefile.in +++ b/test/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -55,16 +71,18 @@ host_triplet = @host@ DIST_COMMON = $(srcdir)/H5srcdir_str.h.in $(srcdir)/Makefile.am \ $(srcdir)/Makefile.in $(srcdir)/testcheck_version.sh.in \ $(srcdir)/testerror.sh.in $(srcdir)/testlibinfo.sh.in \ - $(srcdir)/testlinks_env.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testlinks_env.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING check_PROGRAMS = $(am__EXEEXT_1) error_test$(EXEEXT) \ err_compat$(EXEEXT) tcheck_version$(EXEEXT) testmeta$(EXEEXT) \ links_env$(EXEEXT) @BUILD_ALL_CONDITIONAL_TRUE@noinst_PROGRAMS = $(am__EXEEXT_2) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = test ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -76,9 +94,10 @@ LTLIBRARIES = $(noinst_LTLIBRARIES) libh5test_la_LIBADD = am_libh5test_la_OBJECTS = h5test.lo testframe.lo cache_common.lo libh5test_la_OBJECTS = $(am_libh5test_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am__EXEEXT_1 = testhdf5$(EXEEXT) lheap$(EXEEXT) ohdr$(EXEEXT) \ stab$(EXEEXT) gheap$(EXEEXT) cache$(EXEEXT) cache_api$(EXEEXT) \ cache_tagging$(EXEEXT) pool$(EXEEXT) accum$(EXEEXT) \ @@ -402,6 +421,18 @@ vfd_SOURCES = vfd.c vfd_OBJECTS = vfd.$(OBJEXT) vfd_LDADD = $(LDADD) vfd_DEPENDENCIES = libh5test.la $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -412,22 +443,18 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(libh5test_la_SOURCES) accum.c app_ref.c big.c bittests.c \ btree2.c cache.c cache_api.c cache_tagging.c cmpd_dset.c \ cross_read.c dangle.c dectris_tst.c dsets.c dt_arith.c \ @@ -459,12 +486,19 @@ DIST_SOURCES = $(libh5test_la_SOURCES) accum.c app_ref.c big.c \ set_extent.c space_overflow.c stab.c tcheck_version.c \ $(testhdf5_SOURCES) testmeta.c $(ttsafe_SOURCES) unlink.c \ vfd.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -482,12 +516,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -848,6 +879,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -877,6 +912,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -899,13 +935,15 @@ testlinks_env.sh: $(top_builddir)/config.status $(srcdir)/testlinks_env.sh.in clean-noinstLTLIBRARIES: -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) - @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libh5test.la: $(libh5test_la_OBJECTS) $(libh5test_la_DEPENDENCIES) + @list='$(noinst_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libh5test.la: $(libh5test_la_OBJECTS) $(libh5test_la_DEPENDENCIES) $(EXTRA_libh5test_la_DEPENDENCIES) $(AM_V_CCLD)$(LINK) $(libh5test_la_OBJECTS) $(libh5test_la_LIBADD) $(LIBS) clean-checkPROGRAMS: @@ -925,220 +963,220 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -accum$(EXEEXT): $(accum_OBJECTS) $(accum_DEPENDENCIES) +accum$(EXEEXT): $(accum_OBJECTS) $(accum_DEPENDENCIES) $(EXTRA_accum_DEPENDENCIES) @rm -f accum$(EXEEXT) $(AM_V_CCLD)$(LINK) $(accum_OBJECTS) $(accum_LDADD) $(LIBS) -app_ref$(EXEEXT): $(app_ref_OBJECTS) $(app_ref_DEPENDENCIES) +app_ref$(EXEEXT): $(app_ref_OBJECTS) $(app_ref_DEPENDENCIES) $(EXTRA_app_ref_DEPENDENCIES) @rm -f app_ref$(EXEEXT) $(AM_V_CCLD)$(LINK) $(app_ref_OBJECTS) $(app_ref_LDADD) $(LIBS) -big$(EXEEXT): $(big_OBJECTS) $(big_DEPENDENCIES) +big$(EXEEXT): $(big_OBJECTS) $(big_DEPENDENCIES) $(EXTRA_big_DEPENDENCIES) @rm -f big$(EXEEXT) $(AM_V_CCLD)$(LINK) $(big_OBJECTS) $(big_LDADD) $(LIBS) -bittests$(EXEEXT): $(bittests_OBJECTS) $(bittests_DEPENDENCIES) +bittests$(EXEEXT): $(bittests_OBJECTS) $(bittests_DEPENDENCIES) $(EXTRA_bittests_DEPENDENCIES) @rm -f bittests$(EXEEXT) $(AM_V_CCLD)$(LINK) $(bittests_OBJECTS) $(bittests_LDADD) $(LIBS) -btree2$(EXEEXT): $(btree2_OBJECTS) $(btree2_DEPENDENCIES) +btree2$(EXEEXT): $(btree2_OBJECTS) $(btree2_DEPENDENCIES) $(EXTRA_btree2_DEPENDENCIES) @rm -f btree2$(EXEEXT) $(AM_V_CCLD)$(LINK) $(btree2_OBJECTS) $(btree2_LDADD) $(LIBS) -cache$(EXEEXT): $(cache_OBJECTS) $(cache_DEPENDENCIES) +cache$(EXEEXT): $(cache_OBJECTS) $(cache_DEPENDENCIES) $(EXTRA_cache_DEPENDENCIES) @rm -f cache$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cache_OBJECTS) $(cache_LDADD) $(LIBS) -cache_api$(EXEEXT): $(cache_api_OBJECTS) $(cache_api_DEPENDENCIES) +cache_api$(EXEEXT): $(cache_api_OBJECTS) $(cache_api_DEPENDENCIES) $(EXTRA_cache_api_DEPENDENCIES) @rm -f cache_api$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cache_api_OBJECTS) $(cache_api_LDADD) $(LIBS) -cache_tagging$(EXEEXT): $(cache_tagging_OBJECTS) $(cache_tagging_DEPENDENCIES) +cache_tagging$(EXEEXT): $(cache_tagging_OBJECTS) $(cache_tagging_DEPENDENCIES) $(EXTRA_cache_tagging_DEPENDENCIES) @rm -f cache_tagging$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cache_tagging_OBJECTS) $(cache_tagging_LDADD) $(LIBS) -cmpd_dset$(EXEEXT): $(cmpd_dset_OBJECTS) $(cmpd_dset_DEPENDENCIES) +cmpd_dset$(EXEEXT): $(cmpd_dset_OBJECTS) $(cmpd_dset_DEPENDENCIES) $(EXTRA_cmpd_dset_DEPENDENCIES) @rm -f cmpd_dset$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cmpd_dset_OBJECTS) $(cmpd_dset_LDADD) $(LIBS) -cross_read$(EXEEXT): $(cross_read_OBJECTS) $(cross_read_DEPENDENCIES) +cross_read$(EXEEXT): $(cross_read_OBJECTS) $(cross_read_DEPENDENCIES) $(EXTRA_cross_read_DEPENDENCIES) @rm -f cross_read$(EXEEXT) $(AM_V_CCLD)$(LINK) $(cross_read_OBJECTS) $(cross_read_LDADD) $(LIBS) -dangle$(EXEEXT): $(dangle_OBJECTS) $(dangle_DEPENDENCIES) +dangle$(EXEEXT): $(dangle_OBJECTS) $(dangle_DEPENDENCIES) $(EXTRA_dangle_DEPENDENCIES) @rm -f dangle$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dangle_OBJECTS) $(dangle_LDADD) $(LIBS) -dectris_tst$(EXEEXT): $(dectris_tst_OBJECTS) $(dectris_tst_DEPENDENCIES) +dectris_tst$(EXEEXT): $(dectris_tst_OBJECTS) $(dectris_tst_DEPENDENCIES) $(EXTRA_dectris_tst_DEPENDENCIES) @rm -f dectris_tst$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dectris_tst_OBJECTS) $(dectris_tst_LDADD) $(LIBS) -dsets$(EXEEXT): $(dsets_OBJECTS) $(dsets_DEPENDENCIES) +dsets$(EXEEXT): $(dsets_OBJECTS) $(dsets_DEPENDENCIES) $(EXTRA_dsets_DEPENDENCIES) @rm -f dsets$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dsets_OBJECTS) $(dsets_LDADD) $(LIBS) -dt_arith$(EXEEXT): $(dt_arith_OBJECTS) $(dt_arith_DEPENDENCIES) +dt_arith$(EXEEXT): $(dt_arith_OBJECTS) $(dt_arith_DEPENDENCIES) $(EXTRA_dt_arith_DEPENDENCIES) @rm -f dt_arith$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dt_arith_OBJECTS) $(dt_arith_LDADD) $(LIBS) -dtransform$(EXEEXT): $(dtransform_OBJECTS) $(dtransform_DEPENDENCIES) +dtransform$(EXEEXT): $(dtransform_OBJECTS) $(dtransform_DEPENDENCIES) $(EXTRA_dtransform_DEPENDENCIES) @rm -f dtransform$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dtransform_OBJECTS) $(dtransform_LDADD) $(LIBS) -dtypes$(EXEEXT): $(dtypes_OBJECTS) $(dtypes_DEPENDENCIES) +dtypes$(EXEEXT): $(dtypes_OBJECTS) $(dtypes_DEPENDENCIES) $(EXTRA_dtypes_DEPENDENCIES) @rm -f dtypes$(EXEEXT) $(AM_V_CCLD)$(LINK) $(dtypes_OBJECTS) $(dtypes_LDADD) $(LIBS) -earray$(EXEEXT): $(earray_OBJECTS) $(earray_DEPENDENCIES) +earray$(EXEEXT): $(earray_OBJECTS) $(earray_DEPENDENCIES) $(EXTRA_earray_DEPENDENCIES) @rm -f earray$(EXEEXT) $(AM_V_CCLD)$(LINK) $(earray_OBJECTS) $(earray_LDADD) $(LIBS) -efc$(EXEEXT): $(efc_OBJECTS) $(efc_DEPENDENCIES) +efc$(EXEEXT): $(efc_OBJECTS) $(efc_DEPENDENCIES) $(EXTRA_efc_DEPENDENCIES) @rm -f efc$(EXEEXT) $(AM_V_CCLD)$(LINK) $(efc_OBJECTS) $(efc_LDADD) $(LIBS) -enum$(EXEEXT): $(enum_OBJECTS) $(enum_DEPENDENCIES) +enum$(EXEEXT): $(enum_OBJECTS) $(enum_DEPENDENCIES) $(EXTRA_enum_DEPENDENCIES) @rm -f enum$(EXEEXT) $(AM_V_CCLD)$(LINK) $(enum_OBJECTS) $(enum_LDADD) $(LIBS) -err_compat$(EXEEXT): $(err_compat_OBJECTS) $(err_compat_DEPENDENCIES) +err_compat$(EXEEXT): $(err_compat_OBJECTS) $(err_compat_DEPENDENCIES) $(EXTRA_err_compat_DEPENDENCIES) @rm -f err_compat$(EXEEXT) $(AM_V_CCLD)$(LINK) $(err_compat_OBJECTS) $(err_compat_LDADD) $(LIBS) -error_test$(EXEEXT): $(error_test_OBJECTS) $(error_test_DEPENDENCIES) +error_test$(EXEEXT): $(error_test_OBJECTS) $(error_test_DEPENDENCIES) $(EXTRA_error_test_DEPENDENCIES) @rm -f error_test$(EXEEXT) $(AM_V_CCLD)$(LINK) $(error_test_OBJECTS) $(error_test_LDADD) $(LIBS) -extend$(EXEEXT): $(extend_OBJECTS) $(extend_DEPENDENCIES) +extend$(EXEEXT): $(extend_OBJECTS) $(extend_DEPENDENCIES) $(EXTRA_extend_DEPENDENCIES) @rm -f extend$(EXEEXT) $(AM_V_CCLD)$(LINK) $(extend_OBJECTS) $(extend_LDADD) $(LIBS) -external$(EXEEXT): $(external_OBJECTS) $(external_DEPENDENCIES) +external$(EXEEXT): $(external_OBJECTS) $(external_DEPENDENCIES) $(EXTRA_external_DEPENDENCIES) @rm -f external$(EXEEXT) $(AM_V_CCLD)$(LINK) $(external_OBJECTS) $(external_LDADD) $(LIBS) -farray$(EXEEXT): $(farray_OBJECTS) $(farray_DEPENDENCIES) +farray$(EXEEXT): $(farray_OBJECTS) $(farray_DEPENDENCIES) $(EXTRA_farray_DEPENDENCIES) @rm -f farray$(EXEEXT) $(AM_V_CCLD)$(LINK) $(farray_OBJECTS) $(farray_LDADD) $(LIBS) -fheap$(EXEEXT): $(fheap_OBJECTS) $(fheap_DEPENDENCIES) +fheap$(EXEEXT): $(fheap_OBJECTS) $(fheap_DEPENDENCIES) $(EXTRA_fheap_DEPENDENCIES) @rm -f fheap$(EXEEXT) $(AM_V_CCLD)$(LINK) $(fheap_OBJECTS) $(fheap_LDADD) $(LIBS) -file_image$(EXEEXT): $(file_image_OBJECTS) $(file_image_DEPENDENCIES) +file_image$(EXEEXT): $(file_image_OBJECTS) $(file_image_DEPENDENCIES) $(EXTRA_file_image_DEPENDENCIES) @rm -f file_image$(EXEEXT) $(AM_V_CCLD)$(LINK) $(file_image_OBJECTS) $(file_image_LDADD) $(LIBS) -fillval$(EXEEXT): $(fillval_OBJECTS) $(fillval_DEPENDENCIES) +fillval$(EXEEXT): $(fillval_OBJECTS) $(fillval_DEPENDENCIES) $(EXTRA_fillval_DEPENDENCIES) @rm -f fillval$(EXEEXT) $(AM_V_CCLD)$(LINK) $(fillval_OBJECTS) $(fillval_LDADD) $(LIBS) -filter_fail$(EXEEXT): $(filter_fail_OBJECTS) $(filter_fail_DEPENDENCIES) +filter_fail$(EXEEXT): $(filter_fail_OBJECTS) $(filter_fail_DEPENDENCIES) $(EXTRA_filter_fail_DEPENDENCIES) @rm -f filter_fail$(EXEEXT) $(AM_V_CCLD)$(LINK) $(filter_fail_OBJECTS) $(filter_fail_LDADD) $(LIBS) -flush1$(EXEEXT): $(flush1_OBJECTS) $(flush1_DEPENDENCIES) +flush1$(EXEEXT): $(flush1_OBJECTS) $(flush1_DEPENDENCIES) $(EXTRA_flush1_DEPENDENCIES) @rm -f flush1$(EXEEXT) $(AM_V_CCLD)$(LINK) $(flush1_OBJECTS) $(flush1_LDADD) $(LIBS) -flush2$(EXEEXT): $(flush2_OBJECTS) $(flush2_DEPENDENCIES) +flush2$(EXEEXT): $(flush2_OBJECTS) $(flush2_DEPENDENCIES) $(EXTRA_flush2_DEPENDENCIES) @rm -f flush2$(EXEEXT) $(AM_V_CCLD)$(LINK) $(flush2_OBJECTS) $(flush2_LDADD) $(LIBS) -freespace$(EXEEXT): $(freespace_OBJECTS) $(freespace_DEPENDENCIES) +freespace$(EXEEXT): $(freespace_OBJECTS) $(freespace_DEPENDENCIES) $(EXTRA_freespace_DEPENDENCIES) @rm -f freespace$(EXEEXT) $(AM_V_CCLD)$(LINK) $(freespace_OBJECTS) $(freespace_LDADD) $(LIBS) -gen_bad_ohdr$(EXEEXT): $(gen_bad_ohdr_OBJECTS) $(gen_bad_ohdr_DEPENDENCIES) +gen_bad_ohdr$(EXEEXT): $(gen_bad_ohdr_OBJECTS) $(gen_bad_ohdr_DEPENDENCIES) $(EXTRA_gen_bad_ohdr_DEPENDENCIES) @rm -f gen_bad_ohdr$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_bad_ohdr_OBJECTS) $(gen_bad_ohdr_LDADD) $(LIBS) -gen_bogus$(EXEEXT): $(gen_bogus_OBJECTS) $(gen_bogus_DEPENDENCIES) +gen_bogus$(EXEEXT): $(gen_bogus_OBJECTS) $(gen_bogus_DEPENDENCIES) $(EXTRA_gen_bogus_DEPENDENCIES) @rm -f gen_bogus$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_bogus_OBJECTS) $(gen_bogus_LDADD) $(LIBS) -gen_cross$(EXEEXT): $(gen_cross_OBJECTS) $(gen_cross_DEPENDENCIES) +gen_cross$(EXEEXT): $(gen_cross_OBJECTS) $(gen_cross_DEPENDENCIES) $(EXTRA_gen_cross_DEPENDENCIES) @rm -f gen_cross$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_cross_OBJECTS) $(gen_cross_LDADD) $(LIBS) -gen_deflate$(EXEEXT): $(gen_deflate_OBJECTS) $(gen_deflate_DEPENDENCIES) +gen_deflate$(EXEEXT): $(gen_deflate_OBJECTS) $(gen_deflate_DEPENDENCIES) $(EXTRA_gen_deflate_DEPENDENCIES) @rm -f gen_deflate$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_deflate_OBJECTS) $(gen_deflate_LDADD) $(LIBS) -gen_file_image$(EXEEXT): $(gen_file_image_OBJECTS) $(gen_file_image_DEPENDENCIES) +gen_file_image$(EXEEXT): $(gen_file_image_OBJECTS) $(gen_file_image_DEPENDENCIES) $(EXTRA_gen_file_image_DEPENDENCIES) @rm -f gen_file_image$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_file_image_OBJECTS) $(gen_file_image_LDADD) $(LIBS) -gen_filespace$(EXEEXT): $(gen_filespace_OBJECTS) $(gen_filespace_DEPENDENCIES) +gen_filespace$(EXEEXT): $(gen_filespace_OBJECTS) $(gen_filespace_DEPENDENCIES) $(EXTRA_gen_filespace_DEPENDENCIES) @rm -f gen_filespace$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_filespace_OBJECTS) $(gen_filespace_LDADD) $(LIBS) -gen_filters$(EXEEXT): $(gen_filters_OBJECTS) $(gen_filters_DEPENDENCIES) +gen_filters$(EXEEXT): $(gen_filters_OBJECTS) $(gen_filters_DEPENDENCIES) $(EXTRA_gen_filters_DEPENDENCIES) @rm -f gen_filters$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_filters_OBJECTS) $(gen_filters_LDADD) $(LIBS) -gen_new_array$(EXEEXT): $(gen_new_array_OBJECTS) $(gen_new_array_DEPENDENCIES) +gen_new_array$(EXEEXT): $(gen_new_array_OBJECTS) $(gen_new_array_DEPENDENCIES) $(EXTRA_gen_new_array_DEPENDENCIES) @rm -f gen_new_array$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_new_array_OBJECTS) $(gen_new_array_LDADD) $(LIBS) -gen_new_fill$(EXEEXT): $(gen_new_fill_OBJECTS) $(gen_new_fill_DEPENDENCIES) +gen_new_fill$(EXEEXT): $(gen_new_fill_OBJECTS) $(gen_new_fill_DEPENDENCIES) $(EXTRA_gen_new_fill_DEPENDENCIES) @rm -f gen_new_fill$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_new_fill_OBJECTS) $(gen_new_fill_LDADD) $(LIBS) -gen_new_group$(EXEEXT): $(gen_new_group_OBJECTS) $(gen_new_group_DEPENDENCIES) +gen_new_group$(EXEEXT): $(gen_new_group_OBJECTS) $(gen_new_group_DEPENDENCIES) $(EXTRA_gen_new_group_DEPENDENCIES) @rm -f gen_new_group$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_new_group_OBJECTS) $(gen_new_group_LDADD) $(LIBS) -gen_new_mtime$(EXEEXT): $(gen_new_mtime_OBJECTS) $(gen_new_mtime_DEPENDENCIES) +gen_new_mtime$(EXEEXT): $(gen_new_mtime_OBJECTS) $(gen_new_mtime_DEPENDENCIES) $(EXTRA_gen_new_mtime_DEPENDENCIES) @rm -f gen_new_mtime$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_new_mtime_OBJECTS) $(gen_new_mtime_LDADD) $(LIBS) -gen_new_super$(EXEEXT): $(gen_new_super_OBJECTS) $(gen_new_super_DEPENDENCIES) +gen_new_super$(EXEEXT): $(gen_new_super_OBJECTS) $(gen_new_super_DEPENDENCIES) $(EXTRA_gen_new_super_DEPENDENCIES) @rm -f gen_new_super$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_new_super_OBJECTS) $(gen_new_super_LDADD) $(LIBS) -gen_noencoder$(EXEEXT): $(gen_noencoder_OBJECTS) $(gen_noencoder_DEPENDENCIES) +gen_noencoder$(EXEEXT): $(gen_noencoder_OBJECTS) $(gen_noencoder_DEPENDENCIES) $(EXTRA_gen_noencoder_DEPENDENCIES) @rm -f gen_noencoder$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_noencoder_OBJECTS) $(gen_noencoder_LDADD) $(LIBS) -gen_nullspace$(EXEEXT): $(gen_nullspace_OBJECTS) $(gen_nullspace_DEPENDENCIES) +gen_nullspace$(EXEEXT): $(gen_nullspace_OBJECTS) $(gen_nullspace_DEPENDENCIES) $(EXTRA_gen_nullspace_DEPENDENCIES) @rm -f gen_nullspace$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_nullspace_OBJECTS) $(gen_nullspace_LDADD) $(LIBS) -gen_sizes_lheap$(EXEEXT): $(gen_sizes_lheap_OBJECTS) $(gen_sizes_lheap_DEPENDENCIES) +gen_sizes_lheap$(EXEEXT): $(gen_sizes_lheap_OBJECTS) $(gen_sizes_lheap_DEPENDENCIES) $(EXTRA_gen_sizes_lheap_DEPENDENCIES) @rm -f gen_sizes_lheap$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_sizes_lheap_OBJECTS) $(gen_sizes_lheap_LDADD) $(LIBS) -gen_specmetaread$(EXEEXT): $(gen_specmetaread_OBJECTS) $(gen_specmetaread_DEPENDENCIES) +gen_specmetaread$(EXEEXT): $(gen_specmetaread_OBJECTS) $(gen_specmetaread_DEPENDENCIES) $(EXTRA_gen_specmetaread_DEPENDENCIES) @rm -f gen_specmetaread$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_specmetaread_OBJECTS) $(gen_specmetaread_LDADD) $(LIBS) -gen_udlinks$(EXEEXT): $(gen_udlinks_OBJECTS) $(gen_udlinks_DEPENDENCIES) +gen_udlinks$(EXEEXT): $(gen_udlinks_OBJECTS) $(gen_udlinks_DEPENDENCIES) $(EXTRA_gen_udlinks_DEPENDENCIES) @rm -f gen_udlinks$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gen_udlinks_OBJECTS) $(gen_udlinks_LDADD) $(LIBS) -getname$(EXEEXT): $(getname_OBJECTS) $(getname_DEPENDENCIES) +getname$(EXEEXT): $(getname_OBJECTS) $(getname_DEPENDENCIES) $(EXTRA_getname_DEPENDENCIES) @rm -f getname$(EXEEXT) $(AM_V_CCLD)$(LINK) $(getname_OBJECTS) $(getname_LDADD) $(LIBS) -gheap$(EXEEXT): $(gheap_OBJECTS) $(gheap_DEPENDENCIES) +gheap$(EXEEXT): $(gheap_OBJECTS) $(gheap_DEPENDENCIES) $(EXTRA_gheap_DEPENDENCIES) @rm -f gheap$(EXEEXT) $(AM_V_CCLD)$(LINK) $(gheap_OBJECTS) $(gheap_LDADD) $(LIBS) -hyperslab$(EXEEXT): $(hyperslab_OBJECTS) $(hyperslab_DEPENDENCIES) +hyperslab$(EXEEXT): $(hyperslab_OBJECTS) $(hyperslab_DEPENDENCIES) $(EXTRA_hyperslab_DEPENDENCIES) @rm -f hyperslab$(EXEEXT) $(AM_V_CCLD)$(LINK) $(hyperslab_OBJECTS) $(hyperslab_LDADD) $(LIBS) -istore$(EXEEXT): $(istore_OBJECTS) $(istore_DEPENDENCIES) +istore$(EXEEXT): $(istore_OBJECTS) $(istore_DEPENDENCIES) $(EXTRA_istore_DEPENDENCIES) @rm -f istore$(EXEEXT) $(AM_V_CCLD)$(LINK) $(istore_OBJECTS) $(istore_LDADD) $(LIBS) -lheap$(EXEEXT): $(lheap_OBJECTS) $(lheap_DEPENDENCIES) +lheap$(EXEEXT): $(lheap_OBJECTS) $(lheap_DEPENDENCIES) $(EXTRA_lheap_DEPENDENCIES) @rm -f lheap$(EXEEXT) $(AM_V_CCLD)$(LINK) $(lheap_OBJECTS) $(lheap_LDADD) $(LIBS) -links$(EXEEXT): $(links_OBJECTS) $(links_DEPENDENCIES) +links$(EXEEXT): $(links_OBJECTS) $(links_DEPENDENCIES) $(EXTRA_links_DEPENDENCIES) @rm -f links$(EXEEXT) $(AM_V_CCLD)$(LINK) $(links_OBJECTS) $(links_LDADD) $(LIBS) -links_env$(EXEEXT): $(links_env_OBJECTS) $(links_env_DEPENDENCIES) +links_env$(EXEEXT): $(links_env_OBJECTS) $(links_env_DEPENDENCIES) $(EXTRA_links_env_DEPENDENCIES) @rm -f links_env$(EXEEXT) $(AM_V_CCLD)$(LINK) $(links_env_OBJECTS) $(links_env_LDADD) $(LIBS) -mf$(EXEEXT): $(mf_OBJECTS) $(mf_DEPENDENCIES) +mf$(EXEEXT): $(mf_OBJECTS) $(mf_DEPENDENCIES) $(EXTRA_mf_DEPENDENCIES) @rm -f mf$(EXEEXT) $(AM_V_CCLD)$(LINK) $(mf_OBJECTS) $(mf_LDADD) $(LIBS) -mount$(EXEEXT): $(mount_OBJECTS) $(mount_DEPENDENCIES) +mount$(EXEEXT): $(mount_OBJECTS) $(mount_DEPENDENCIES) $(EXTRA_mount_DEPENDENCIES) @rm -f mount$(EXEEXT) $(AM_V_CCLD)$(LINK) $(mount_OBJECTS) $(mount_LDADD) $(LIBS) -mtime$(EXEEXT): $(mtime_OBJECTS) $(mtime_DEPENDENCIES) +mtime$(EXEEXT): $(mtime_OBJECTS) $(mtime_DEPENDENCIES) $(EXTRA_mtime_DEPENDENCIES) @rm -f mtime$(EXEEXT) $(AM_V_CCLD)$(LINK) $(mtime_OBJECTS) $(mtime_LDADD) $(LIBS) -ntypes$(EXEEXT): $(ntypes_OBJECTS) $(ntypes_DEPENDENCIES) +ntypes$(EXEEXT): $(ntypes_OBJECTS) $(ntypes_DEPENDENCIES) $(EXTRA_ntypes_DEPENDENCIES) @rm -f ntypes$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ntypes_OBJECTS) $(ntypes_LDADD) $(LIBS) -objcopy$(EXEEXT): $(objcopy_OBJECTS) $(objcopy_DEPENDENCIES) +objcopy$(EXEEXT): $(objcopy_OBJECTS) $(objcopy_DEPENDENCIES) $(EXTRA_objcopy_DEPENDENCIES) @rm -f objcopy$(EXEEXT) $(AM_V_CCLD)$(LINK) $(objcopy_OBJECTS) $(objcopy_LDADD) $(LIBS) -ohdr$(EXEEXT): $(ohdr_OBJECTS) $(ohdr_DEPENDENCIES) +ohdr$(EXEEXT): $(ohdr_OBJECTS) $(ohdr_DEPENDENCIES) $(EXTRA_ohdr_DEPENDENCIES) @rm -f ohdr$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ohdr_OBJECTS) $(ohdr_LDADD) $(LIBS) -pool$(EXEEXT): $(pool_OBJECTS) $(pool_DEPENDENCIES) +pool$(EXEEXT): $(pool_OBJECTS) $(pool_DEPENDENCIES) $(EXTRA_pool_DEPENDENCIES) @rm -f pool$(EXEEXT) $(AM_V_CCLD)$(LINK) $(pool_OBJECTS) $(pool_LDADD) $(LIBS) -reserved$(EXEEXT): $(reserved_OBJECTS) $(reserved_DEPENDENCIES) +reserved$(EXEEXT): $(reserved_OBJECTS) $(reserved_DEPENDENCIES) $(EXTRA_reserved_DEPENDENCIES) @rm -f reserved$(EXEEXT) $(AM_V_CCLD)$(LINK) $(reserved_OBJECTS) $(reserved_LDADD) $(LIBS) -set_extent$(EXEEXT): $(set_extent_OBJECTS) $(set_extent_DEPENDENCIES) +set_extent$(EXEEXT): $(set_extent_OBJECTS) $(set_extent_DEPENDENCIES) $(EXTRA_set_extent_DEPENDENCIES) @rm -f set_extent$(EXEEXT) $(AM_V_CCLD)$(LINK) $(set_extent_OBJECTS) $(set_extent_LDADD) $(LIBS) -space_overflow$(EXEEXT): $(space_overflow_OBJECTS) $(space_overflow_DEPENDENCIES) +space_overflow$(EXEEXT): $(space_overflow_OBJECTS) $(space_overflow_DEPENDENCIES) $(EXTRA_space_overflow_DEPENDENCIES) @rm -f space_overflow$(EXEEXT) $(AM_V_CCLD)$(LINK) $(space_overflow_OBJECTS) $(space_overflow_LDADD) $(LIBS) -stab$(EXEEXT): $(stab_OBJECTS) $(stab_DEPENDENCIES) +stab$(EXEEXT): $(stab_OBJECTS) $(stab_DEPENDENCIES) $(EXTRA_stab_DEPENDENCIES) @rm -f stab$(EXEEXT) $(AM_V_CCLD)$(LINK) $(stab_OBJECTS) $(stab_LDADD) $(LIBS) -tcheck_version$(EXEEXT): $(tcheck_version_OBJECTS) $(tcheck_version_DEPENDENCIES) +tcheck_version$(EXEEXT): $(tcheck_version_OBJECTS) $(tcheck_version_DEPENDENCIES) $(EXTRA_tcheck_version_DEPENDENCIES) @rm -f tcheck_version$(EXEEXT) $(AM_V_CCLD)$(LINK) $(tcheck_version_OBJECTS) $(tcheck_version_LDADD) $(LIBS) -testhdf5$(EXEEXT): $(testhdf5_OBJECTS) $(testhdf5_DEPENDENCIES) +testhdf5$(EXEEXT): $(testhdf5_OBJECTS) $(testhdf5_DEPENDENCIES) $(EXTRA_testhdf5_DEPENDENCIES) @rm -f testhdf5$(EXEEXT) $(AM_V_CCLD)$(LINK) $(testhdf5_OBJECTS) $(testhdf5_LDADD) $(LIBS) -testmeta$(EXEEXT): $(testmeta_OBJECTS) $(testmeta_DEPENDENCIES) +testmeta$(EXEEXT): $(testmeta_OBJECTS) $(testmeta_DEPENDENCIES) $(EXTRA_testmeta_DEPENDENCIES) @rm -f testmeta$(EXEEXT) $(AM_V_CCLD)$(LINK) $(testmeta_OBJECTS) $(testmeta_LDADD) $(LIBS) -ttsafe$(EXEEXT): $(ttsafe_OBJECTS) $(ttsafe_DEPENDENCIES) +ttsafe$(EXEEXT): $(ttsafe_OBJECTS) $(ttsafe_DEPENDENCIES) $(EXTRA_ttsafe_DEPENDENCIES) @rm -f ttsafe$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ttsafe_OBJECTS) $(ttsafe_LDADD) $(LIBS) -unlink$(EXEEXT): $(unlink_OBJECTS) $(unlink_DEPENDENCIES) +unlink$(EXEEXT): $(unlink_OBJECTS) $(unlink_DEPENDENCIES) $(EXTRA_unlink_DEPENDENCIES) @rm -f unlink$(EXEEXT) $(AM_V_CCLD)$(LINK) $(unlink_OBJECTS) $(unlink_LDADD) $(LIBS) -vfd$(EXEEXT): $(vfd_OBJECTS) $(vfd_DEPENDENCIES) +vfd$(EXEEXT): $(vfd_OBJECTS) $(vfd_DEPENDENCIES) $(EXTRA_vfd_DEPENDENCIES) @rm -f vfd$(EXEEXT) $(AM_V_CCLD)$(LINK) $(vfd_OBJECTS) $(vfd_LDADD) $(LIBS) @@ -1255,26 +1293,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -1331,6 +1366,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -1380,10 +1429,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -1471,18 +1525,18 @@ uninstall-am: .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ - clean-noinstLTLIBRARIES clean-noinstPROGRAMS ctags distclean \ - distclean-compile distclean-generic distclean-libtool \ - distclean-tags distdir dvi dvi-am html html-am info info-am \ - install install-am install-data install-data-am install-dvi \ - install-dvi-am install-exec install-exec-am install-html \ - install-html-am install-info install-info-am install-man \ - install-pdf install-pdf-am install-ps install-ps-am \ - install-strip installcheck installcheck-am installdirs \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ - mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ - uninstall-am + clean-noinstLTLIBRARIES clean-noinstPROGRAMS cscopelist ctags \ + distclean distclean-compile distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installdirs maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-compile \ + mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ + pdf-am ps ps-am tags uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -1512,7 +1566,7 @@ flush2.chkexe_: flush1.chkexe_ # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -1538,7 +1592,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -1562,7 +1616,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -1572,7 +1626,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1662,7 +1716,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1692,7 +1746,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/test/accum.c b/test/accum.c index c5f6610..e4c1bd8 100644 --- a/test/accum.c +++ b/test/accum.c @@ -1793,15 +1793,17 @@ accum_printf(void) printf("=====================================================\n"); } else { printf("=====================================================\n"); - printf(" accumulator allocated size == %lu\n", (unsigned long)accum->alloc_size); - printf(" accumulated data size == %lu\n", (unsigned long)accum->size); - printf(" accumulator dirty? == %d\n", accum->dirty); + printf(" accumulator allocated size == %zu\n", accum->alloc_size); + printf(" accumulated data size == %zu\n", accum->size); + HDfprintf(stdout, " accumulator dirty? == %t\n", accum->dirty); printf("=====================================================\n"); - printf(" start of accumulated data, loc = %llu\n", accum->loc); - if (accum->dirty) printf(" start of dirty region, loc = %llu\n", accum->loc + accum->dirty_off); - if (accum->dirty) printf(" end of dirty region, loc = %llu\n", accum->loc + accum->dirty_off + accum->dirty_len); - printf(" end of accumulated data, loc = %llu\n", accum->loc + accum->size); - printf(" end of accumulator allocation, loc = %llu\n", accum->loc + accum->alloc_size); + HDfprintf(stdout, " start of accumulated data, loc = %a\n", accum->loc); + if(accum->dirty) { + HDfprintf(stdout, " start of dirty region, loc = %a\n", (haddr_t)(accum->loc + accum->dirty_off)); + HDfprintf(stdout, " end of dirty region, loc = %a\n", (haddr_t)(accum->loc + accum->dirty_off + accum->dirty_len)); + } /* end if */ + HDfprintf(stdout, " end of accumulated data, loc = %a\n", (haddr_t)(accum->loc + accum->size)); + HDfprintf(stdout, " end of accumulator allocation, loc = %a\n", (haddr_t)(accum->loc + accum->alloc_size)); printf("=====================================================\n"); } printf("\n\n"); diff --git a/test/cache.c b/test/cache.c index 0e6cb42..ba51a38 100644 --- a/test/cache.c +++ b/test/cache.c @@ -33532,6 +33532,7 @@ check_notify_cb(void) reset_entries(); file_ptr = setup_cache((size_t)(2 * 1024), (size_t)(1 * 1024)); + if ( !file_ptr ) CACHE_ERROR("setup_cache returned NULL") cache_ptr = file_ptr->shared->cache; base_addr = entries[entry_type]; @@ -33675,8 +33676,7 @@ check_notify_cb(void) } /* end for */ done: - if(file_ptr) - takedown_cache(file_ptr, FALSE, FALSE); + takedown_cache(file_ptr, FALSE, FALSE); if ( pass ) PASSED() diff --git a/test/cache_common.c b/test/cache_common.c index e6dd020..7b26714 100644 --- a/test/cache_common.c +++ b/test/cache_common.c @@ -2031,7 +2031,7 @@ verify_entry_status(H5C_t * cache_ptr, int num_entries, struct expected_entry_status expected[]) { - static char msg[128]; + static char msg[256]; int i; i = 0; diff --git a/test/cache_tagging.c b/test/cache_tagging.c index 9aef651..f644235 100644 --- a/test/cache_tagging.c +++ b/test/cache_tagging.c @@ -740,7 +740,7 @@ check_group_creation_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ int verbose = FALSE; /* verbose file outout */ - haddr_t root_tag; /* Root Group Tag */ + haddr_t root_tag = HADDR_UNDEF; /* Root Group Tag */ haddr_t g_tag; /* Group Tag */ haddr_t sbe_tag; /* Sblock Extension Tag */ @@ -1249,7 +1249,7 @@ check_group_open_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ int verbose = FALSE; /* verbose file output */ - haddr_t root_tag; + haddr_t root_tag = HADDR_UNDEF; haddr_t sbe_tag; haddr_t g_tag; @@ -1633,6 +1633,8 @@ error: * March 3, 2010 * * Modifications: + * Vailin Choi; July 2012 + * Add verify_tag() calls because H5FD_FLMAP_DICHOTOMY is now the default free-list mapping. * *------------------------------------------------------------------------- */ @@ -1756,7 +1758,12 @@ check_attribute_rename_tags(hid_t fcpl, int type) /* verify shared header message stored as a list */ if ( verify_tag(fid, H5AC_SOHM_LIST_ID, H5AC__SOHM_TAG) < 0 ) TEST_ERROR; - /* verify free space header */ + /* + * 3 calls to verify_tag() for verifying free space: + * one freespace header tag for H5FD_MEM_DRAW manager, + * one freespace header tag for H5FD_MEM_SUPER manager + */ + if ( verify_tag(fid, H5AC_FSPACE_HDR_ID, H5AC__FREESPACE_TAG) < 0 ) TEST_ERROR; if ( verify_tag(fid, H5AC_FSPACE_HDR_ID, H5AC__FREESPACE_TAG) < 0 ) TEST_ERROR; /* verify btree header and leaf node belonging to group */ @@ -1799,6 +1806,8 @@ error: * March 3, 2010 * * Modifications: + * Vailin Choi; July 2012 + * Add verify_tag() call because H5FD_FLMAP_DICHOTOMY is now the default free-list mapping. * *------------------------------------------------------------------------- */ @@ -1901,7 +1910,12 @@ check_attribute_delete_tags(hid_t fcpl, int type) /* verify shared header message master table */ if ( verify_tag(fid, H5AC_SOHM_TABLE_ID, H5AC__SOHM_TAG) < 0 ) TEST_ERROR; - /* verify free space */ + /* + * 2 calls to verify_tag() for verifying free space: + * one freespace header tag for H5FD_MEM_DRAW manager, + * one freespace header tag for H5FD_MEM_SUPER manager + */ + if ( verify_tag(fid, H5AC_FSPACE_HDR_ID, H5AC__FREESPACE_TAG) < 0 ) TEST_ERROR; if ( verify_tag(fid, H5AC_FSPACE_HDR_ID, H5AC__FREESPACE_TAG) < 0 ) TEST_ERROR; } /* end if */ @@ -3056,7 +3070,7 @@ check_object_info_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ int verbose = FALSE; /* verbose file output */ - haddr_t root_tag; + haddr_t root_tag = HADDR_UNDEF; haddr_t sbe_tag; haddr_t g_tag; H5O_info_t oinfo; /* Object info struct */ @@ -3170,7 +3184,7 @@ check_object_copy_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ hid_t gid = -1; /* Group Identifier */ int verbose = FALSE; /* verbose file output */ - haddr_t root_tag; + haddr_t root_tag = HADDR_UNDEF; haddr_t sbe_tag; haddr_t g_tag; haddr_t copy_tag; diff --git a/test/dsets.c b/test/dsets.c index ee341c9..3b081da 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -999,8 +999,8 @@ test_conv_buffer(hid_t fid) herr_t status = -1; int j, k, l; - CmpField *cf; - CmpFieldR *cfrR; + CmpField *cf = NULL; + CmpFieldR *cfrR = NULL; hid_t dataset = -1; /* dataset ID */ hid_t space = -1; /* data space ID */ @@ -1014,7 +1014,7 @@ test_conv_buffer(hid_t fid) TESTING("data type conversion buffer size"); - cf = (CmpField *)HDcalloc((size_t)1, sizeof(CmpField)); + if ((cf = (CmpField *)HDcalloc((size_t)1, sizeof(CmpField))) == 0) goto error; /* Populate the data members */ for(j = 0; j < DIM1; j++) @@ -1063,7 +1063,7 @@ test_conv_buffer(hid_t fid) if(H5Tinsert(ctype2, "C", HOFFSET(CmpFieldR, c), arr_type5) < 0) goto error; /* Read should succeed since library will set conversion buffer big enough */ - cfrR = (CmpFieldR *)HDcalloc((size_t)1, sizeof(CmpFieldR)); + if ((cfrR = (CmpFieldR *)HDcalloc((size_t)1, sizeof(CmpFieldR))) == 0) goto error; if(H5Dread(dataset, ctype2, H5S_ALL, H5S_ALL, H5P_DEFAULT, cfrR) < 0) goto error; /* Read should fail since conversion buffer isn't big enough */ @@ -1100,10 +1100,8 @@ test_conv_buffer(hid_t fid) if(H5Tclose(arr_type5) < 0) goto error; if(H5Dclose(dataset) < 0) goto error; - if(cf) - HDfree(cf); - if(cfrR) - HDfree(cfrR); + HDfree(cf); + HDfree(cfrR); puts(" PASSED"); return(0); diff --git a/test/dt_arith.c b/test/dt_arith.c index 0001755..096b83e 100644 --- a/test/dt_arith.c +++ b/test/dt_arith.c @@ -1105,9 +1105,9 @@ test_derived_flt(void) } fails_this_test = 0; - if(buf) free(buf); - if(saved_buf) free(saved_buf); - if(aligned) free(aligned); + free(buf); + free(saved_buf); + free(aligned); buf = NULL; saved_buf = NULL; aligned = NULL; diff --git a/test/dtypes.c b/test/dtypes.c index 3db9bf8..117a21a 100644 --- a/test/dtypes.c +++ b/test/dtypes.c @@ -1127,10 +1127,8 @@ test_compound_5(void) } /* Free memory buffers */ - if(buf) - HDfree(buf); - if(bkg) - HDfree(bkg); + HDfree(buf); + HDfree(bkg); return retval; } @@ -4698,11 +4696,12 @@ test_bitfield_funcs(void) { hid_t type=-1, ntype=-1, super=-1; int size; - char* tag; + char* tag=0; H5T_pad_t inpad; H5T_cset_t cset; H5T_str_t strpad; herr_t ret; + int retval=-1; TESTING("some type functions for bitfield"); @@ -4786,16 +4785,18 @@ test_bitfield_funcs(void) goto error; } /* end if */ - H5Tclose(type); - H5Tclose(ntype); - PASSED(); - reset_hdf5(); - return 0; + retval = 0; error: + + if (retval == -1) retval = 1; + + HDfree(tag); + H5Tclose(ntype); H5Tclose(type); + if (retval == 0) PASSED(); reset_hdf5(); - return 1; + return retval; } @@ -7049,11 +7050,13 @@ error: */ int test_utf_ascii_conv(void) { - hid_t fid; - hid_t did; - hid_t utf8_vtid, ascii_vtid; - hid_t utf8_tid, ascii_tid; - hid_t sid; + hid_t fid = -1; + hid_t did = -1; + hid_t utf8_vtid = -1; + hid_t ascii_vtid = -1; + hid_t utf8_tid = -1; + hid_t ascii_tid = -1; + hid_t sid = -1; const char *utf8_w = "foo!"; char *ascii_r = NULL; const char *ascii_w = "bar!"; diff --git a/test/file_image.c b/test/file_image.c index 73c901e..9d7a48c 100644 --- a/test/file_image.c +++ b/test/file_image.c @@ -86,15 +86,16 @@ typedef struct { static int test_properties(void) { - hid_t fapl_1; - hid_t fapl_2; - char *buffer; + hid_t fapl_1 = -1; + hid_t fapl_2 = -1; + char *buffer = 0; int count = 10; - void *temp; - char *temp2; + void *temp = 0; + char *temp2 = 0; int i; size_t size; size_t temp_size; + int retval = 1; TESTING("File image property list functions"); @@ -145,18 +146,21 @@ test_properties(void) VERIFY(temp2 != temp, "Retrieved buffer is the same as previously retrieved buffer"); VERIFY(0 == HDmemcmp(temp2, buffer, size),"Buffers contain different data"); + retval = 0; + +error: + /* Close everything */ - if(H5Pclose(fapl_1) < 0) FAIL_STACK_ERROR - if(H5Pclose(fapl_2) < 0) FAIL_STACK_ERROR + if(H5Pclose(fapl_1) < 0) retval = 1; + if(H5Pclose(fapl_2) < 0) retval = 1; HDfree(buffer); HDfree(temp); HDfree(temp2); - PASSED(); - return 0; + if(retval == 0) + PASSED(); -error: - return 1; + return retval; } /* end test_properties() */ /****************************************************************************** diff --git a/test/freespace.c b/test/freespace.c index 6960e6d..c0df4c8 100644 --- a/test/freespace.c +++ b/test/freespace.c @@ -1522,8 +1522,10 @@ test_fs_sect_merge(hid_t fapl) /* Free the section node(s) */ if(TEST_sect_free((H5FS_section_info_t *)sect_node1) < 0) TEST_ERROR + sect_node1 = NULL; if(TEST_sect_free((H5FS_section_info_t *)sect_node2) < 0) TEST_ERROR + sect_node2 = NULL; /* Close the free space manager */ if(H5FS_close(f, H5P_DATASET_XFER_DEFAULT, frsp) < 0) diff --git a/test/h5test.c b/test/h5test.c index 7faba81..ea30fad 100644 --- a/test/h5test.c +++ b/test/h5test.c @@ -735,6 +735,8 @@ h5_set_info_object(void) valp = envp = next = HDstrdup(envp); + if (!valp) return 0; + /* create an INFO object if not created yet */ if (h5_io_info_g == MPI_INFO_NULL) MPI_Info_create(&h5_io_info_g); @@ -761,6 +763,8 @@ h5_set_info_object(void) while (*namep && (*namep == ' ' || *namep == '\t')) namep++; + if (!*namep) continue; /* was all white space, so move to next k/v pair */ + /* eat up any ending white spaces */ endp = &namep[strlen(namep) - 1]; @@ -127,12 +127,19 @@ static unsigned test_mf_fs_drivers(hid_t fapl); /* * Verify statistics for the free-space manager + * + * Modifications: + * Vailin Choi; July 2012 + * To ensure "f" and "frsp" are valid pointers */ static int check_stats(const H5F_t *f, const H5FS_t *frsp, frspace_state_t *state) { H5FS_stat_t frspace_stats; /* Statistics about the heap */ + HDassert(f); + HDassert(frsp); + /* Get statistics for free-space and verify they are correct */ if(H5FS_stat_info(f, frsp, &frspace_stats) < 0) FAIL_STACK_ERROR @@ -1071,6 +1078,10 @@ error: * The block is allocated from file allocation * Deallocate the block which will be returned to free-space manager * (the space is shrunk and freed since it is at end of file) + * + * Modifications: + * Vailin Choi; July 2012 + * Initialize the new field "allow_eoa_shrink_only" for user data. */ static unsigned test_mf_fs_alloc_free(hid_t fapl) @@ -1136,6 +1147,7 @@ test_mf_fs_alloc_free(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1222,6 +1234,7 @@ test_mf_fs_alloc_free(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1306,6 +1319,7 @@ test_mf_fs_alloc_free(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1421,6 +1435,10 @@ error: * Try to extend the allocated block by 50 from the free-space_manager: * Fail: section A does not adjoin section B (70+20 != address of section B) even though * the requested-size (50) equal to size of section B (50) + * + * Modifications: + * Vailin Choi; July 2012 + * Initialize the new field "allow_eoa_shrink_only" for user data. */ static unsigned test_mf_fs_extend(hid_t fapl) @@ -1487,6 +1505,7 @@ test_mf_fs_extend(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node1, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1604,6 +1623,7 @@ test_mf_fs_extend(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node1, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1716,6 +1736,7 @@ test_mf_fs_extend(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node1, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1828,6 +1849,7 @@ test_mf_fs_extend(hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A of size=20 to free-space */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node1, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -1957,6 +1979,10 @@ error: * which will absorb meta_aggr to the section: * section size + remaining size of aggregator is > aggr->alloc_size, * section is allowed to absorb an aggregator (allow_sect_absorb is true) + * + * Modifications: + * Vailin Choi; July 2012 + * Initialize the new field "allow_eoa_shrink_only" for user data. */ static unsigned test_mf_fs_absorb(const char *env_h5_drvr, hid_t fapl) @@ -2020,6 +2046,7 @@ test_mf_fs_absorb(const char *env_h5_drvr, hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* When adding, meta_aggr is absorbed onto the beginning of the section */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -2092,6 +2119,7 @@ test_mf_fs_absorb(const char *env_h5_drvr, hid_t fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* When adding, meta_aggr is absorbed onto the end of the section */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -3133,7 +3161,7 @@ test_mf_aggr_alloc7(const char *env_h5_drvr, hid_t fapl) /* sdata_aggr info is reset to 0 */ H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); - if (sdata_addr != 0) TEST_ERROR + if (sdata_addr != HADDR_UNDEF) TEST_ERROR if (sdata_size != 0) TEST_ERROR /* Verify that meta_aggr's unused space of 1968 is freed to free-space */ @@ -3481,15 +3509,18 @@ error: * * Test 2: H5MF_alloc() block A from meta_aggr * H5MF_alloc() block B from sdata_aggr - * H5MF_try_shrink() block B should merge it onto the end of meta_aggr - * because H5F_FS_MERGE_METADATA|H5F_FS_MERGE_RAWDATA is on for - * sec2 driver's FLMAP_SINGLE + * H5MF_try_shrink() block B should merge it back to the end of sdata_aggr + * because sec2 driver is FLMAP_DICHOTOMY by default * * Test 3: H5MF_alloc() block A from meta_aggr * H5MF_alloc() block B from meta_aggr * H5MF_alloc() block C from meta_aggr * H5MF_try_shrink() block B should fail since it does not adjoin the * beginning nor the end of meta_aggr + * + * Modifications: + * Vailin Choi; July 2012 + * Changes due to the switch to H5FD_FLMAP_DICHOTOMY */ static unsigned test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) @@ -3501,7 +3532,7 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) H5FD_mem_t type, stype; haddr_t addr1, addr2, addr3, saddr1; haddr_t ma_addr=HADDR_UNDEF, new_ma_addr=HADDR_UNDEF; - haddr_t sdata_addr=HADDR_UNDEF, new_sdata_addr=HADDR_UNDEF; + haddr_t new_sdata_addr=HADDR_UNDEF; hsize_t ma_size=0, new_ma_size=0; hsize_t sdata_size=0, new_sdata_size=0; hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ @@ -3593,20 +3624,20 @@ test_mf_aggr_absorb(const char *env_h5_drvr, hid_t fapl) stype = H5FD_MEM_DRAW; saddr1 = H5MF_alloc(f, stype, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE50); - H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); + H5MF_aggr_query(f, &(f->shared->sdata_aggr), NULL, &sdata_size); /* should succeed */ if(H5MF_try_shrink(f, stype, H5P_DATASET_XFER_DEFAULT, saddr1, (hsize_t)TEST_BLOCK_SIZE50) <= 0) TEST_ERROR H5MF_aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); - if (new_sdata_addr != sdata_addr) TEST_ERROR - if (new_sdata_size != sdata_size) TEST_ERROR + if (new_sdata_addr != saddr1) TEST_ERROR + if (new_sdata_size != sdata_size + TEST_BLOCK_SIZE50) TEST_ERROR /* meta_aggr info should be updated because the block is absorbed into the meta_aggr */ H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); if (new_ma_addr != ma_addr) TEST_ERROR - if (new_ma_size != (ma_size+TEST_BLOCK_SIZE50)) TEST_ERROR + if (new_ma_size != (ma_size)) TEST_ERROR H5MF_xfree(f, type, H5P_DATASET_XFER_DEFAULT, addr1, (hsize_t)TEST_BLOCK_SIZE30); @@ -4004,6 +4035,10 @@ error: * Allocate a block of size=40 * The free-space manager is unable to fulfill the request * The block is allocated from file allocation and should be aligned + * + * Modifications: + * Vailin Choi; July 2012 + * Initialize the new field "allow_eoa_shrink_only" for user data. */ static unsigned test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) @@ -4063,6 +4098,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -4132,6 +4168,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -4221,6 +4258,7 @@ test_mf_align_fs(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) udata.dxpl_id = H5P_DATASET_XFER_DEFAULT; udata.alloc_type = type; udata.allow_sect_absorb = TRUE; + udata.allow_eoa_shrink_only = FALSE; /* Add section A to free-space manager */ if (H5FS_sect_add(f, H5P_DATASET_XFER_DEFAULT, f->shared->fs_man[type], (H5FS_section_info_t *)sect_node, H5FS_ADD_RETURNED_SPACE, &udata)) @@ -4602,8 +4640,7 @@ error: * request-size < aggr->alloc_size * fragment size > (aggr->alloc_size - request-size) * Result: - * A block of aggr->alloc_size + (fragment size - (aggr->alloc_size - request-size)) - * is extended from file allocation for the aggregator + * A block of (fragment size + request-size) is extended from file allocation for the aggregator * The second block of 50 is allocated from the aggregator and should be aligned * Fragment from alignment of aggregator allocation is freed to free-space:[4126, 4066] * There is space of 2018 left in meta_aggr @@ -4628,12 +4665,14 @@ error: * Result: * A block of meta_aggr->alloc_size is allocated from file allocation for the aggregator * Fragment from alignment of file allocation is freed to free-space:[14336, 2048] - * Since this fragment adjoins sdata_aggr and fulfills "absorb" condition, - * the space left in sdata_aggr is absorbed into the fragment and freed to free-space: [12318, 2018] - * other_aggr is reset to 0 + * other_aggr is [12318, 2018] * The third block of 80 is allocated from the aggregator and should be aligned * There is space of 1968 left in meta_aggr * EOA is at 18432 + * + * Modifications: + * Vailin Choi; July 2012 + * Changes due to the switch to H5FD_FLMAP_DICHOTOMY */ static unsigned test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) @@ -4644,7 +4683,7 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) h5_stat_size_t file_size; /* File size */ H5FD_mem_t type, stype; haddr_t addr1, addr2, addr3, saddr1; - frspace_state_t state; + frspace_state_t state[H5FD_MEM_NTYPES]; haddr_t ma_addr=HADDR_UNDEF, sdata_addr=HADDR_UNDEF; hsize_t ma_size=0, sdata_size=0, mis_align=0; hsize_t alignment=0, tmp=0; @@ -4697,11 +4736,11 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if (addr1 % alignment) TEST_ERROR /* fragment for alignment of block 30 is freed to free-space */ - HDmemset(&state, 0, sizeof(frspace_state_t)); + HDmemset(&state, 0, sizeof(frspace_state_t) * H5FD_MEM_NTYPES); if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -4721,9 +4760,9 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 50 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -4754,9 +4793,9 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 30 for sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } /* Verify that the allocated block is aligned */ @@ -4773,12 +4812,13 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) * For alignment = 1024, alloc_size = 2048: * fragment for unused space in meta_aggr is freed to free-space * For alignment = 4096, alloc_size = 2048: - * fragment from alignment of file allocation absorbs sdata_aggr's remaining space + * fragment from alignment of ma_addr is freed + * block 30 is allocated from ma_addr */ mis_align = 0; if ((alignment == TEST_ALIGN1024) && (tmp = (ma_addr % alignment))) mis_align = alignment - tmp; - else if ((alignment == TEST_ALIGN4096) && (tmp = (sdata_addr % alignment))) + else if ((alignment == TEST_ALIGN4096) && (tmp = ((sdata_addr + sdata_size) % alignment))) mis_align = alignment - tmp; /* Allocate a block of 80 from meta_aggr */ @@ -4789,9 +4829,9 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 80 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -4800,8 +4840,15 @@ test_mf_align_alloc2(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) TEST_ERROR /* Verify total size of free space after all the allocations */ - if(check_stats(f, f->shared->fs_man[type], &state)) - TEST_ERROR + if(f->shared->fs_man[type]) { + if(check_stats(f, f->shared->fs_man[type], &(state[type]))) + TEST_ERROR + } + + if(f->shared->fs_man[stype]) { + if(check_stats(f, f->shared->fs_man[stype], &(state[stype]))) + TEST_ERROR + } H5MF_xfree(f, type, H5P_DATASET_XFER_DEFAULT, addr1, (hsize_t)TEST_BLOCK_SIZE30); H5MF_xfree(f, type, H5P_DATASET_XFER_DEFAULT, addr2, (hsize_t)TEST_BLOCK_SIZE50); @@ -4961,6 +5008,11 @@ error: * The meta_aggr is updated to point to the new space * The block of 1034 is allocated from the new block and should be aligned * There is space of 1014 left in meta_aggr + * + * Modifications: + * Vailin Choi; July 2012 + * Changes due to the switch to H5FD_FLMAP_DICHOTOMY + * */ static unsigned test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) @@ -4972,7 +5024,7 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) H5FD_mem_t type, stype; haddr_t addr1, addr2, addr3; haddr_t saddr1, saddr2, saddr3; - frspace_state_t state; + frspace_state_t state[H5FD_MEM_NTYPES]; haddr_t ma_addr=HADDR_UNDEF, sdata_addr=HADDR_UNDEF; hsize_t ma_size=0, sdata_size=0, mis_align=0; hsize_t alignment=0, tmp=0; @@ -5026,11 +5078,11 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if (addr1 % alignment) TEST_ERROR /* fragment for alignment of block 30 is freed to free-space */ - HDmemset(&state, 0, sizeof(frspace_state_t)); + HDmemset(&state, 0, sizeof(frspace_state_t) * H5FD_MEM_NTYPES); if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -5050,9 +5102,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 50 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -5085,9 +5137,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 30 for sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5106,9 +5158,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 50 for sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5127,9 +5179,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 80 for sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5149,9 +5201,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 1034 for meta_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } /* calculate unused space in meta_aggr that is freed to free-space after block 1034 */ @@ -5161,9 +5213,9 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for unused space in meta_aggr after block 1034 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -5172,8 +5224,15 @@ test_mf_align_alloc3(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) TEST_ERROR /* Verify total size of free space after all allocations */ - if(check_stats(f, f->shared->fs_man[type], &state)) - TEST_ERROR + if(f->shared->fs_man[type]) { + if(check_stats(f, f->shared->fs_man[type], &(state[type]))) + TEST_ERROR + } + + if(f->shared->fs_man[stype]) { + if(check_stats(f, f->shared->fs_man[stype], &(state[stype]))) + TEST_ERROR + } if(H5Fclose(file) < 0) FAIL_STACK_ERROR @@ -5377,8 +5436,10 @@ test_mf_align_alloc4(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if (addr3 % alignment) TEST_ERROR /* Verify total size of free space after all allocations */ - if(check_stats(f, f->shared->fs_man[type], &state)) - TEST_ERROR + if(f->shared->fs_man[type]) { + if(check_stats(f, f->shared->fs_man[type], &state)) + TEST_ERROR + } if(H5Fclose(file) < 0) FAIL_STACK_ERROR @@ -5464,6 +5525,10 @@ error: * sdata_aggr is reset to 0 * EOA is 14346 * meta_aggr and sdata_aggr are all 0 + * + * Modifications: + * Vailin Choi; July 2012 + * Changes due to the switch to H5FD_FLMAP_DICHOTOMY */ static unsigned test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) @@ -5474,7 +5539,7 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) h5_stat_size_t file_size; H5FD_mem_t type, stype; haddr_t addr1, addr2, saddr1; - frspace_state_t state; + frspace_state_t state[H5FD_MEM_NTYPES]; haddr_t ma_addr=HADDR_UNDEF, new_ma_addr=HADDR_UNDEF; haddr_t sdata_addr=HADDR_UNDEF, new_sdata_addr=HADDR_UNDEF; hsize_t ma_size=0, new_ma_size=0, sdata_size=0, new_sdata_size=0; @@ -5533,18 +5598,16 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if ((addr1 + TEST_BLOCK_SIZE30) != ma_addr) TEST_ERROR /* fragment for alignment of block 30 is freed to free-space */ - HDmemset(&state, 0, sizeof(frspace_state_t)); + HDmemset(&state, 0, sizeof(frspace_state_t) * H5FD_MEM_NTYPES); if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } /* calculate fragment for alignment of block 30 from sdata_aggr */ mis_align = 0; - if ((alignment == TEST_ALIGN1024) && (tmp = (ma_addr + ma_size) % alignment)) - mis_align = alignment - tmp; - else if ((alignment == TEST_ALIGN4096) && (tmp = (ma_addr % alignment))) + if ((tmp = (ma_addr + ma_size) % alignment)) mis_align = alignment - tmp; /* Allocate a block of 30 from sdata_aggr */ @@ -5556,9 +5619,9 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment of alignment for block 30 in sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5566,9 +5629,7 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* calculate fragment for alignment of block 2058 from meta_aggr */ mis_align = 0; - if ((alignment == TEST_ALIGN1024) && (tmp = (sdata_addr + sdata_size) % alignment)) - mis_align = alignment - tmp; - else if ((alignment == TEST_ALIGN4096) && (tmp = (sdata_addr % alignment))) + if ((tmp = (sdata_addr + sdata_size) % alignment)) mis_align = alignment - tmp; /* Allocate a block of 2058 from meta_aggr */ @@ -5579,27 +5640,30 @@ test_mf_align_alloc5(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 2058 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } /* Verify total size of free space after all allocations */ - if(check_stats(f, f->shared->fs_man[type], &state)) - TEST_ERROR + if(f->shared->fs_man[type]) { + if(check_stats(f, f->shared->fs_man[type], &(state[type]))) + TEST_ERROR + } + + if(f->shared->fs_man[stype]) { + if(check_stats(f, f->shared->fs_man[stype], &(state[stype]))) + TEST_ERROR + } /* nothing is changed in meta_aggr */ H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); - if (alignment == TEST_ALIGN1024 && (new_ma_addr != ma_addr || new_ma_size != ma_size)) - TEST_ERROR - else if (alignment == TEST_ALIGN4096 && (new_ma_addr != 0 || new_ma_size != 0)) + if (new_ma_addr != ma_addr || new_ma_size != ma_size) TEST_ERROR /* nothing is changed in sdata_aggr */ H5MF_aggr_query(f, &(f->shared->sdata_aggr), &new_sdata_addr, &new_sdata_size); - if (alignment == TEST_ALIGN1024 && (new_sdata_addr != sdata_addr || new_sdata_size != sdata_size)) - TEST_ERROR - else if (alignment == TEST_ALIGN4096 && ((new_sdata_addr != 0 || new_sdata_size != 0))) + if (new_sdata_addr != sdata_addr || new_sdata_size != sdata_size) TEST_ERROR if(H5Fclose(file) < 0) @@ -5691,21 +5755,16 @@ error: * Result: * A block of sdata_aggr->alloc_size is allocated from file allocation * Fragment from alignment of file allocation is freed to free-space: [6144, 2048] - * This fragment adjoins meta_aggr and fulfills "absorb" condition, - * the remaining space left in meta_aggr is absorbed into the fragment and - * freed to free-space:[4126, 2018] - * meta_aggr is reset to 0 * The first block of 30 is allocated from the aggregator and should be aligned * There is space of 2018 left in sdata_aggr - * EOA is 5120 + * EOA is 10240 * * Allocate second block (50) from sdata_aggr: - * (request-size+fragment size) is <= sdata_aggr->size + * (request-size+fragment size) is > sdata_aggr->size * request-size < sdata_aggr->alloc_size * fragment size > (sdata_aggr->alloc_size - request-size) * Result: - * A block of sdata_aggr->alloc_size + (fragment size - (sdata_aggr->alloc_size - request-size)) - * is extended from file allocation for the aggregator + * A block of (fragment size + request-size) is extended from file allocation for the aggregator * The second block of 50 is allocated from sdata_aggr and should be aligned * Fragment from alignment of aggregator allocation is freed to free-space:[8222, 4066] * There is space of 2018 left in sdata_aggr @@ -5716,8 +5775,7 @@ error: * request-size < sdata_aggr->alloc_size * fragment size > (sdata_aggr->alloc_size - request-size) * Result: - * A block of sdata_aggr->alloc_size+(fragment size-(sdata_aggr->alloc_size-request-size)) - * is extended from file allocation for sdata_aggr + * A block of (fragment size + request-size) is extended from file allocation for sdata_aggr * The third block of 80 is allocated from sdata_aggr and should be aligned * Fragment from alignment of aggregator allocation is freed to free-space:[12338, 4046] * There is space of 2018 left in sdata_aggr @@ -5734,6 +5792,10 @@ error: * Fragment from alignment of file allocation is freed to free-space:[16464, 4016] * EOA is at 22538 * meta_aggr is unchanged + * + * Modifications: + * Vailin Choi; July 2012 + * Changes due to the switch to H5FD_FLMAP_DICHOTOMY */ static unsigned test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) @@ -5745,7 +5807,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) H5FD_mem_t type, stype; haddr_t addr1, addr2; haddr_t saddr1, saddr2, saddr3; - frspace_state_t state; + frspace_state_t state[H5FD_MEM_NTYPES]; haddr_t ma_addr=HADDR_UNDEF, new_ma_addr=HADDR_UNDEF, sdata_addr=HADDR_UNDEF; hsize_t ma_size=0, new_ma_size=0, sdata_size=0; hsize_t alignment=0, mis_align=0, tmp=0; @@ -5798,11 +5860,11 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) if (addr1 % alignment) TEST_ERROR /* fragment for alignment of block 30 in meta_aggr is freed to free-space */ - HDmemset(&state, 0, sizeof(frspace_state_t)); + HDmemset(&state, 0, sizeof(frspace_state_t) * H5FD_MEM_NTYPES); if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &ma_addr, &ma_size); @@ -5811,9 +5873,7 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* calculate fragment for alignment of block 30 in sdata_aggr */ mis_align = 0; - if ((alignment == TEST_ALIGN1024) && (tmp = (ma_addr + ma_size) % alignment)) - mis_align = alignment - tmp; - else if ((alignment == TEST_ALIGN4096) && (tmp = (ma_addr % alignment))) + if ((tmp = (ma_addr + ma_size) % alignment)) mis_align = alignment - tmp; /* Allocate a block of 30 from sdata_aggr */ @@ -5825,9 +5885,9 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 30 in sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5846,9 +5906,9 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 50 in sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5867,9 +5927,9 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 80 in sdata_aggr is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[stype].tot_space += mis_align; + state[stype].tot_sect_count += 1; + state[stype].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); @@ -5889,24 +5949,30 @@ test_mf_align_alloc6(const char *env_h5_drvr, hid_t fapl, hid_t new_fapl) /* fragment for alignment of block 2058 is freed to free-space */ if (mis_align) { - state.tot_space += mis_align; - state.tot_sect_count += 1; - state.serial_sect_count += 1; + state[type].tot_space += mis_align; + state[type].tot_sect_count += 1; + state[type].serial_sect_count += 1; } H5MF_aggr_query(f, &(f->shared->meta_aggr), &new_ma_addr, &new_ma_size); H5MF_aggr_query(f, &(f->shared->sdata_aggr), &sdata_addr, &sdata_size); - if (alignment == TEST_ALIGN1024 && (new_ma_addr != ma_addr || new_ma_size != ma_size)) - TEST_ERROR - else if (alignment == TEST_ALIGN4096 && (new_ma_addr != 0 || new_ma_size != 0)) + if (new_ma_addr != ma_addr && new_ma_size != ma_size) TEST_ERROR - if (sdata_addr != 0 || sdata_size != 0) + if (sdata_addr != HADDR_UNDEF || sdata_size != 0) TEST_ERROR - if(check_stats(f, f->shared->fs_man[type], &state)) - TEST_ERROR + if(f->shared->fs_man[type]) { + if(check_stats(f, f->shared->fs_man[type], &(state[type]))) + TEST_ERROR + } + + + if(f->shared->fs_man[stype]) { + if(check_stats(f, f->shared->fs_man[stype], &(state[stype]))) + TEST_ERROR + } if(H5Fclose(file) < 0) FAIL_STACK_ERROR @@ -7282,6 +7348,100 @@ error: return(1); } /* test_filespace_drivers() */ +/* + * To verify that file space is allocated from the corresponding free-space manager + * because H5FD_FLMAP_DICHOTOMY is used as the default free-list mapping. + * + * (1) Allocate the first block (size 30) of type H5FD_MEM_SUPER + * (2) Allocate the second block (size 50) of type H5FD_MEM_SUPER + * + * (3) Allocate the first block (size 30) of type H5FD_MEM_DRAW + * + * (4) Free the first block (size 30) of type H5FD_MEM_SUPER + * + * (5) Allocate the second block (size 30) of type H5FD_MEM_DRAW + * (6) Verify that this second block is not the freed block from (3) + * + * (7) Allocate the second block (size 30) of type H5FD_MEM_DRAW + * (8) Free the first block (size 30) of type H5FD_MEM_DRAW + * + * (9) Allocate the third block (size 30) of type H5FD_MEM_SUPER + * (10) Verify that this third block is not freed block from (8) + */ +static unsigned +test_dichotomy(const char *env_h5_drvr, hid_t fapl) +{ + hid_t file = -1; /* File ID */ + char filename[FILENAME_LEN]; /* Filename to use */ + H5F_t *f = NULL; /* Internal file object pointer */ + H5FD_mem_t type, stype; + haddr_t addr1, addr2, addr3, saddr1, saddr2; + hbool_t contig_addr_vfd; /* Whether VFD used has a contigous address space */ + + TESTING("Allocation from raw or metadata free-space manager"); + + /* Skip test when using VFDs that don't use the metadata aggregator */ + contig_addr_vfd = (hbool_t)(HDstrcmp(env_h5_drvr, "split") && HDstrcmp(env_h5_drvr, "multi")); + if(contig_addr_vfd) { + /* Set the filename to use for this test (dependent on fapl) */ + h5_fixname(FILENAME[0], fapl, filename, sizeof(filename)); + + /* Create the file to work on */ + if((file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + FAIL_STACK_ERROR + + /* Get a pointer to the internal file object */ + if(NULL == (f = (H5F_t *)H5I_object(file))) + FAIL_STACK_ERROR + + /* Allocate the first block of type H5FD_MEM_SUPER */ + type = H5FD_MEM_SUPER; + addr1 = H5MF_alloc(f, type, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE30); + + /* Allocate the second block of type H5FD_MEM_SUPER */ + addr2 = H5MF_alloc(f, type, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE50); + + /* Allocate the first block of type H5FD_MEM_DRAW */ + stype = H5FD_MEM_DRAW; + saddr1 = H5MF_alloc(f, stype, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE30); + + /* Free the first block of type H5FD_MEM_SUPER */ + H5MF_xfree(f, type, H5P_DATASET_XFER_DEFAULT, addr1, (hsize_t)TEST_BLOCK_SIZE30); + + /* Allocate the second block of type H5FD_MEM_DRAW */ + saddr2 = H5MF_alloc(f, stype, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE30); + + /* Verify that saddr1 is not addr1 */ + if(saddr2 == addr1) TEST_ERROR + + /* Free the first block of type H5FD_MEM_DRAW */ + H5MF_xfree(f, stype, H5P_DATASET_XFER_DEFAULT, saddr1, (hsize_t)TEST_BLOCK_SIZE30); + + /* Allocate the third block of type H5FD_MEM_SUPER */ + addr3 = H5MF_alloc(f, type, H5P_DATASET_XFER_DEFAULT, (hsize_t)TEST_BLOCK_SIZE30); + + /* Verify that addr3 is not saddr1 */ + if(addr3 == saddr1) TEST_ERROR + + if(H5Fclose(file) < 0) + FAIL_STACK_ERROR + + PASSED() + } /* end if */ + else { + SKIPPED(); + puts(" Current VFD doesn't support metadata aggregator"); + } /* end else */ + + return(0); + +error: + H5E_BEGIN_TRY { + H5Fclose(file); + } H5E_END_TRY; + return(1); +} /* test_dichotomy() */ + int main(void) { @@ -7324,6 +7484,7 @@ main(void) nerrors += test_mf_fs_alloc_free(fapl); nerrors += test_mf_fs_extend(fapl); nerrors += test_mf_fs_absorb(env_h5_drvr, fapl); + nerrors += test_dichotomy(env_h5_drvr, new_fapl); /* interaction with meta/sdata aggregator */ nerrors += test_mf_aggr_alloc1(env_h5_drvr, fapl); diff --git a/test/ntypes.c b/test/ntypes.c index 165d21b..0af3a3f 100644 --- a/test/ntypes.c +++ b/test/ntypes.c @@ -1776,6 +1776,7 @@ test_vl_dtype(hid_t file) } /* end for */ HDfree(tmp); + tmp = NULL; } /* end for */ } /* end for */ diff --git a/test/objcopy.c b/test/objcopy.c index 6b56b66..d7da8f3 100644 --- a/test/objcopy.c +++ b/test/objcopy.c @@ -10343,7 +10343,7 @@ test_copy_cdt_merge_all_suggs(hid_t fcpl_src, hid_t fcpl_dst, hid_t src_fapl, hid_t did = -1; /* Dataset ID */ hid_t exp_did = -1; /* Dataset ID */ hid_t tid_short = -1; /* Datatype ID */ - hid_t exp_tid; /* Expected datatype ID */ + hid_t exp_tid = -1; /* Expected datatype ID */ hid_t ocpypl_id = -1; /* Object copy plist ID */ unsigned int i; /* Local index variables */ hsize_t dim1d[1]; /* Dataset dimensions */ diff --git a/test/testcheck_version.sh.in b/test/testcheck_version.sh.in index a2c812d..ed9845e 100644 --- a/test/testcheck_version.sh.in +++ b/test/testcheck_version.sh.in @@ -19,6 +19,8 @@ # Programmer: Albert Cheng # Sep 28, 2009 +srcdir=@srcdir@ + # Variables filled in by the configure process. # Determine the configure options of the hdf5 library and executables. Shared_Lib=@enable_shared@ @@ -215,11 +217,6 @@ h5libsettings=../src/libhdf5.settings PURPOSE -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # Figure out library version numbers from the header file. h5versmajor=`grep '#define H5_VERS_MAJOR' $srcdir/../src/H5public.h | cut -f2` h5versminor=`grep '#define H5_VERS_MINOR' $srcdir/../src/H5public.h | cut -f2` diff --git a/test/testerror.sh.in b/test/testerror.sh.in index 440be4f..b68fa7e 100644 --- a/test/testerror.sh.in +++ b/test/testerror.sh.in @@ -15,6 +15,8 @@ # # Tests for test_error and err_compat +srcdir=@srcdir@ + # Determine backward compatibility options eneabled DEPRECATED_SYMBOLS="@DEPRECATED_SYMBOLS@" @@ -24,11 +26,6 @@ DIFF='diff -c' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - test -d ./testfiles || mkdir ./testfiles # Print a line-line message left justified in a field of 70 characters diff --git a/test/testlibinfo.sh.in b/test/testlibinfo.sh.in index 91eda16..fba1794 100644 --- a/test/testlibinfo.sh.in +++ b/test/testlibinfo.sh.in @@ -27,6 +27,8 @@ # Programmer: Albert Cheng # Sep 18, 2009 +srcdir=@srcdir@ + # Determine the configure options of the hdf5 library and executables. Shared_Lib=@enable_shared@ diff --git a/test/testlinks_env.sh.in b/test/testlinks_env.sh.in index 5a7e045..7120430 100644 --- a/test/testlinks_env.sh.in +++ b/test/testlinks_env.sh.in @@ -15,12 +15,9 @@ # # Test for external link with environment variable: HDF5_EXT_PREFIX -nerrors=0 +srcdir=@srcdir@ -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi +nerrors=0 ############################################################################## ############################################################################## @@ -35,6 +32,7 @@ TEST_BIN=`pwd`/$TEST_NAME # The path of the test binary ENVCMD="env HDF5_EXT_PREFIX=.:tmp" # The environment variable & value # # Run the test +echo "$ENVCMD $RUNSERIAL $TEST_BIN" $ENVCMD $RUNSERIAL $TEST_BIN exitcode=$? if [ $exitcode -eq 0 ]; then diff --git a/test/tfile.c b/test/tfile.c index 53ca035..8ee0b64 100644 --- a/test/tfile.c +++ b/test/tfile.c @@ -1340,6 +1340,11 @@ test_file_perm2(void) ** This test checks the free space available in a file in various ** situations. ** +** Modifications: +** Vailin Choi; July 2012 +** Remove datasets in reverse order so that all file spaces are shrunk. +** (A change due to H5FD_FLMAP_DICHOTOMY.) +** *****************************************************************/ static void test_file_freespace(void) @@ -1351,6 +1356,7 @@ test_file_freespace(void) hid_t dspace; /* Dataspace ID */ hid_t dset; /* Dataset ID */ hid_t dcpl; /* Dataset creation property list */ + int k; /* Local index variable */ unsigned u; /* Local index variable */ char name[32]; /* Dataset name */ herr_t ret; @@ -1410,11 +1416,11 @@ test_file_freespace(void) /* Check that there is the right amount of free space in the file */ free_space = H5Fget_freespace(file); CHECK(free_space, FAIL, "H5Fget_freespace"); - VERIFY(free_space, 2008, "H5Fget_freespace"); + VERIFY(free_space, 2360, "H5Fget_freespace"); /* Delete datasets in file */ - for(u = 0; u < 10; u++) { - sprintf(name, "Dataset %u", u); + for(k = 9; k >= 0; k--) { + sprintf(name, "Dataset %u", (unsigned)k); ret = H5Ldelete(file, name, H5P_DEFAULT); CHECK(ret, FAIL, "H5Ldelete"); } /* end for */ diff --git a/test/tsohm.c b/test/tsohm.c index 62154b1..fddb552 100644 --- a/test/tsohm.c +++ b/test/tsohm.c @@ -2463,11 +2463,11 @@ static void test_sohm_size2(int close_reopen) * this happens because it's hard to predict exactly how much space this * will take. */ - if((mult_index_med.attrs2 - mult_index_med.attrs1) != - (list_index_med.attrs2 - list_index_med.attrs1)) + if((mult_index_med.attrs2 - mult_index_med.attrs1) > + (list_index_med.attrs2 - list_index_med.attrs1) * OVERHEAD_ALLOWED) VERIFY(0, 1, "h5_get_file_size"); - if((mult_index_btree.attrs2 - mult_index_btree.attrs1) != - (btree_index.attrs2 - btree_index.attrs1)) + if((mult_index_btree.attrs2 - mult_index_btree.attrs1) > + (btree_index.attrs2 - btree_index.attrs1) * OVERHEAD_ALLOWED) VERIFY(0, 1, "h5_get_file_size"); /* The final file size for both of the multiple index files should be diff --git a/test/tunicode.c b/test/tunicode.c index 3b949e9..0386352 100644 --- a/test/tunicode.c +++ b/test/tunicode.c @@ -161,6 +161,7 @@ void test_strpad(hid_t UNUSED fid, const char *string) /* Create a src_type that holds the UTF-8 string and its final NULL */ big_len = length + 1; /* +1 byte for final NULL */ + HDassert((2*big_len)<=sizeof(cmpbuf)); src_type = mkstr(big_len, H5T_STR_NULLTERM); CHECK(src_type, FAIL, "mkstr"); /* Create a dst_type that holds half of the UTF-8 string and a final @@ -224,6 +225,7 @@ void test_strpad(hid_t UNUSED fid, const char *string) /* Create a src_type that holds the UTF-8 string */ big_len = length; + HDassert((2*big_len)<=sizeof(cmpbuf)); src_type = mkstr(big_len, H5T_STR_NULLPAD); CHECK(src_type, FAIL, "mkstr"); /* Create a dst_type that holds half of the UTF-8 string */ diff --git a/testpar/Makefile.in b/testpar/Makefile.in index a9a4135..5b44e6e 100644 --- a/testpar/Makefile.in +++ b/testpar/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # hdf5 Parallel Library Test Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,13 +67,15 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testph5.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testph5.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) $(am__EXEEXT_2) +TESTS = subdir = testpar ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -71,9 +89,10 @@ t_cache_SOURCES = t_cache.c t_cache_OBJECTS = t_cache.$(OBJEXT) t_cache_LDADD = $(LDADD) t_cache_DEPENDENCIES = $(LIBH5TEST) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = t_mpi_SOURCES = t_mpi.c t_mpi_OBJECTS = t_mpi.$(OBJEXT) t_mpi_LDADD = $(LDADD) @@ -102,6 +121,18 @@ am_testphdf5_OBJECTS = testphdf5.$(OBJEXT) t_dset.$(OBJEXT) \ testphdf5_OBJECTS = $(am_testphdf5_OBJECTS) testphdf5_LDADD = $(LDADD) testphdf5_DEPENDENCIES = $(LIBH5TEST) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -112,33 +143,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = t_cache.c t_mpi.c t_pflush1.c t_pflush2.c \ t_posix_compliant.c t_shapesame.c $(testphdf5_SOURCES) DIST_SOURCES = t_cache.c t_mpi.c t_pflush1.c t_pflush2.c \ t_posix_compliant.c t_shapesame.c $(testphdf5_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= -am__EXEEXT_2 = +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -156,12 +189,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -451,6 +481,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -480,6 +514,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -500,25 +535,25 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -t_cache$(EXEEXT): $(t_cache_OBJECTS) $(t_cache_DEPENDENCIES) +t_cache$(EXEEXT): $(t_cache_OBJECTS) $(t_cache_DEPENDENCIES) $(EXTRA_t_cache_DEPENDENCIES) @rm -f t_cache$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_cache_OBJECTS) $(t_cache_LDADD) $(LIBS) -t_mpi$(EXEEXT): $(t_mpi_OBJECTS) $(t_mpi_DEPENDENCIES) +t_mpi$(EXEEXT): $(t_mpi_OBJECTS) $(t_mpi_DEPENDENCIES) $(EXTRA_t_mpi_DEPENDENCIES) @rm -f t_mpi$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_mpi_OBJECTS) $(t_mpi_LDADD) $(LIBS) -t_pflush1$(EXEEXT): $(t_pflush1_OBJECTS) $(t_pflush1_DEPENDENCIES) +t_pflush1$(EXEEXT): $(t_pflush1_OBJECTS) $(t_pflush1_DEPENDENCIES) $(EXTRA_t_pflush1_DEPENDENCIES) @rm -f t_pflush1$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_pflush1_OBJECTS) $(t_pflush1_LDADD) $(LIBS) -t_pflush2$(EXEEXT): $(t_pflush2_OBJECTS) $(t_pflush2_DEPENDENCIES) +t_pflush2$(EXEEXT): $(t_pflush2_OBJECTS) $(t_pflush2_DEPENDENCIES) $(EXTRA_t_pflush2_DEPENDENCIES) @rm -f t_pflush2$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_pflush2_OBJECTS) $(t_pflush2_LDADD) $(LIBS) -t_posix_compliant$(EXEEXT): $(t_posix_compliant_OBJECTS) $(t_posix_compliant_DEPENDENCIES) +t_posix_compliant$(EXEEXT): $(t_posix_compliant_OBJECTS) $(t_posix_compliant_DEPENDENCIES) $(EXTRA_t_posix_compliant_DEPENDENCIES) @rm -f t_posix_compliant$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_posix_compliant_OBJECTS) $(t_posix_compliant_LDADD) $(LIBS) -t_shapesame$(EXEEXT): $(t_shapesame_OBJECTS) $(t_shapesame_DEPENDENCIES) +t_shapesame$(EXEEXT): $(t_shapesame_OBJECTS) $(t_shapesame_DEPENDENCIES) $(EXTRA_t_shapesame_DEPENDENCIES) @rm -f t_shapesame$(EXEEXT) $(AM_V_CCLD)$(LINK) $(t_shapesame_OBJECTS) $(t_shapesame_LDADD) $(LIBS) -testphdf5$(EXEEXT): $(testphdf5_OBJECTS) $(testphdf5_DEPENDENCIES) +testphdf5$(EXEEXT): $(testphdf5_OBJECTS) $(testphdf5_DEPENDENCIES) $(EXTRA_testphdf5_DEPENDENCIES) @rm -f testphdf5$(EXEEXT) $(AM_V_CCLD)$(LINK) $(testphdf5_OBJECTS) $(testphdf5_LDADD) $(LIBS) @@ -548,26 +583,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -624,6 +656,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -673,10 +719,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -763,8 +814,8 @@ uninstall-am: .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-checkPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-checkPROGRAMS clean-generic clean-libtool \ + cscopelist ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-data \ install-data-am install-dvi install-dvi-am install-exec \ @@ -792,7 +843,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -818,7 +869,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -842,7 +893,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -852,7 +903,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -942,7 +993,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -972,7 +1023,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/testpar/t_dset.c b/testpar/t_dset.c index 456c01e..eac92a1 100644 --- a/testpar/t_dset.c +++ b/testpar/t_dset.c @@ -3048,6 +3048,690 @@ actual_io_mode_tests(void) { return; } +/* + * Function: test_no_collective_cause_mode + * + * Purpose: + * tests cases for broken collective I/O and checks that the + * H5Pget_mpio_no_collective_cause properties in the DXPL have the correct values. + * + * Input: + * selection_mode: various mode to cause broken collective I/O + * Note: Originally, each TEST case is supposed to be used alone. + * After some discussion, this is updated to take multiple TEST cases + * with '|'. However there is no error check for any of combined + * test cases, so a tester is responsible to understand and feed + * proper combination of TESTs if needed. + * + * + * TEST_COLLECTIVE: + * Test for regular collective I/O without cause of breaking. + * Just to test normal behavior. + * + * TEST_SET_INDEPENDENT: + * Test for Independent I/O as the cause of breaking collective I/O. + * + * TEST_DATATYPE_CONVERSION: + * Test for Data Type Conversion as the cause of breaking collective I/O. + * + * TEST_DATA_TRANSFORMS: + * Test for Data Transfrom feature as the cause of breaking collective I/O. + * + * TEST_SET_MPIPOSIX: + * Test for MPI Posix as the cause of breaking collective I/O. + * + * TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES: + * Test for NULL dataspace as the cause of breaking collective I/O. + * + * TEST_POINT_SELECTIONS: + * Test for selecting elements of dataspce as the cause of breaking collective I/O. + * + * TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT: + * Test for Compact layout as the cause of breaking collective I/O. + * + * TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL: + * Test for Externl-File storage as the cause of breaking collective I/O. + * + * TEST_FILTERS: + * Test for using filter (checksum) as the cause of breaking collective I/O. + * Note: TEST_FILTERS mode will not work until H5Dcreate and H5write is supported for mpio and filter feature. Use test_no_collective_cause_mode_filter() function instead. + * + * + * Programmer: Jonathan Kim + * Date: Aug, 2012 + */ +#define DSET_NOCOLCAUSE "nocolcause" +#define NELM 2 +#define FILE_EXTERNAL "nocolcause_extern.data" +#undef H5_HAVE_FILTER_FLETCHER32 +static void +test_no_collective_cause_mode(int selection_mode) +{ + int no_collective_cause_local_write = 0; + int no_collective_cause_local_read = 0; + int no_collective_cause_local_expected = 0; + int no_collective_cause_global_write = 0; + int no_collective_cause_global_read = 0; + int no_collective_cause_global_expected = 0; + hsize_t coord[NELM][RANK]; + + const char * filename; + const char * test_name; + hbool_t is_chunked=1; + hbool_t is_independent=0; + int mpi_size = -1; + int mpi_rank = -1; + int length; + int * buffer; + int i; + MPI_Comm mpi_comm = MPI_COMM_NULL; + MPI_Info mpi_info = MPI_INFO_NULL; + hid_t fid = -1; + hid_t sid = -1; + hid_t dataset = -1; + hid_t data_type = H5T_NATIVE_INT; + hid_t fapl = -1; + hid_t dcpl = -1; + hid_t dxpl_write = -1; + hid_t dxpl_read = -1; + hsize_t dims[RANK]; + hid_t mem_space = -1; + hid_t file_space = -1; + hsize_t chunk_dims[RANK]; + hbool_t use_gpfs = FALSE; + herr_t ret; +#ifdef H5_HAVE_FILTER_FLETCHER32 + H5Z_filter_t filter_info; +#endif + /* set to global value as default */ + int l_facc_type = facc_type; + + /* Create the dataset creation plist */ + dcpl = H5Pcreate(H5P_DATASET_CREATE); + VRFY((dcpl >= 0), "dataset creation plist created successfully"); + + if (selection_mode & TEST_SET_MPIPOSIX) { + l_facc_type = FACC_MPIPOSIX; + } + else { + if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT) { + ret = H5Pset_layout (dcpl, H5D_COMPACT); + VRFY((ret >= 0),"set COMPACT layout succeeded"); + is_chunked = 0; + } + + if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) { + ret = H5Pset_external (dcpl, FILE_EXTERNAL, (off_t) 0, H5F_UNLIMITED); + VRFY((ret >= 0),"set EXTERNAL file layout succeeded"); + is_chunked = 0; + } + +#ifdef H5_HAVE_FILTER_FLETCHER32 + if (selection_mode & TEST_FILTERS) { + ret = H5Zfilter_avail(H5Z_FILTER_FLETCHER32); + VRFY ((ret >=0 ), "Fletcher32 filter is available.\n"); + + ret = H5Zget_filter_info (H5Z_FILTER_FLETCHER32, &filter_info); + VRFY ( ( (filter_info & H5Z_FILTER_CONFIG_ENCODE_ENABLED) || (filter_info & H5Z_FILTER_CONFIG_DECODE_ENABLED) ) , "Fletcher32 filter encoding and decoding available.\n"); + + ret = H5Pset_fletcher32(dcpl); + VRFY((ret >= 0),"set filter (flecher32) succeeded"); + } +#endif /* H5_HAVE_FILTER_FLETCHER32 */ + } + + if (selection_mode & TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES) { + sid = H5Screate(H5S_NULL); + VRFY((sid >= 0), "H5Screate_simple succeeded"); + is_chunked = 0; + } + else { + /* Create the basic Space */ + dims[0] = dim0; + dims[1] = dim1; + sid = H5Screate_simple (RANK, dims, NULL); + VRFY((sid >= 0), "H5Screate_simple succeeded"); + } + + /* Set up MPI parameters */ + MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); + MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); + + + HDassert(mpi_size >= 1); + + mpi_comm = MPI_COMM_WORLD; + mpi_info = MPI_INFO_NULL; + + filename = (const char *)GetTestParameters(); + HDassert(filename != NULL); + + /* Setup the file access template */ + fapl = create_faccess_plist(mpi_comm, mpi_info, l_facc_type, use_gpfs); + VRFY((fapl >= 0), "create_faccess_plist() succeeded"); + + /* Create the file */ + fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + + VRFY((fid >= 0), "H5Fcreate succeeded"); + + /* If we are not testing contiguous datasets */ + if(is_chunked) { + /* Set up chunk information. */ + chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[1] = dims[1]; + ret = H5Pset_chunk(dcpl, 2, chunk_dims); + VRFY((ret >= 0),"chunk creation property list succeeded"); + } + + + /* Create the dataset */ + dataset = H5Dcreate2(fid, "nocolcause", data_type, sid, H5P_DEFAULT, + dcpl, H5P_DEFAULT); + VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded"); + + + /* + * Set expected causes and some tweaks based on the type of test + */ + if (selection_mode & TEST_DATATYPE_CONVERSION) { + test_name = "Broken Collective I/O - Datatype Conversion"; + no_collective_cause_local_expected |= H5D_MPIO_DATATYPE_CONVERSION; + no_collective_cause_global_expected |= H5D_MPIO_DATATYPE_CONVERSION; + /* set different sign to trigger type conversion */ + data_type = H5T_NATIVE_UINT; + } + + if (selection_mode & TEST_DATA_TRANSFORMS) { + test_name = "Broken Collective I/O - DATA Transfroms"; + no_collective_cause_local_expected |= H5D_MPIO_DATA_TRANSFORMS; + no_collective_cause_global_expected |= H5D_MPIO_DATA_TRANSFORMS; + } + + if (selection_mode & TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES) { + test_name = "Broken Collective I/O - No Simple or Scalar DataSpace"; + no_collective_cause_local_expected |= H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES; + no_collective_cause_global_expected |= H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES; + } + + if (selection_mode & TEST_POINT_SELECTIONS ) { + test_name = "Broken Collective I/O - Point Selection"; + no_collective_cause_local_expected |= H5D_MPIO_POINT_SELECTIONS; + no_collective_cause_global_expected |= H5D_MPIO_POINT_SELECTIONS; + } + + if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT || + selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) { + test_name = "Broken Collective I/O - No CONTI or CHUNKED Dataset"; + no_collective_cause_local_expected |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; + no_collective_cause_global_expected |= H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET; + } + +#ifdef H5_HAVE_FILTER_FLETCHER32 + if (selection_mode & TEST_FILTERS) { + test_name = "Broken Collective I/O - Filter is required"; + no_collective_cause_local_expected |= H5D_MPIO_FILTERS; + no_collective_cause_global_expected |= H5D_MPIO_FILTERS; + } +#endif /* H5_HAVE_FILTER_FLETCHER32 */ + + if (selection_mode & TEST_SET_MPIPOSIX) { + test_name = "Broken Collective I/O - MPIO POSIX"; + no_collective_cause_local_expected |= H5D_MPIO_SET_MPIPOSIX; + no_collective_cause_global_expected |= H5D_MPIO_SET_MPIPOSIX; + } + + if (selection_mode & TEST_COLLECTIVE) { + test_name = "Broken Collective I/O - Not Broken"; + no_collective_cause_local_expected = H5D_MPIO_COLLECTIVE; + no_collective_cause_global_expected = H5D_MPIO_COLLECTIVE; + } + + if (selection_mode & TEST_SET_INDEPENDENT) { + test_name = "Broken Collective I/O - Independent"; + no_collective_cause_local_expected = H5D_MPIO_SET_INDEPENDENT; + no_collective_cause_global_expected = H5D_MPIO_SET_INDEPENDENT; + /* switch to independent io */ + is_independent = 1; + } + + /* Add MPIPOSIX cause to expected cause if MPI_POSIX driver is in use '-p'. + * Exception to the independent cause.*/ + if (facc_type == FACC_MPIPOSIX && !(selection_mode & TEST_SET_INDEPENDENT)) { + no_collective_cause_local_expected |= H5D_MPIO_SET_MPIPOSIX; + no_collective_cause_global_expected |= H5D_MPIO_SET_MPIPOSIX; + } + + /* use all spaces for certain tests */ + if (selection_mode & TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES || + selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) { + file_space = H5S_ALL; + mem_space = H5S_ALL; + } + else { + /* Get the file dataspace */ + file_space = H5Dget_space(dataset); + VRFY((file_space >= 0), "H5Dget_space succeeded"); + + /* Create the memory dataspace */ + mem_space = H5Screate_simple (RANK, dims, NULL); + VRFY((mem_space >= 0), "mem_space created"); + } + + if (selection_mode & TEST_POINT_SELECTIONS) { + coord[0][0] = 0; coord[0][1] = 0; + coord[1][0] = 1; coord[1][1] = 1; + ret = H5Sselect_elements (file_space, H5S_SELECT_SET, NELM, (const hsize_t *)coord); + VRFY((ret >= 0), "H5Sselect_elements succeeded"); + + ret = H5Sselect_elements (mem_space, H5S_SELECT_SET, NELM, (const hsize_t *)coord); + VRFY((ret >= 0), "H5Sselect_elements succeeded"); + } + + + /* Get the number of elements in the selection */ + length = dim0 * dim1; + + /* Allocate and initialize the buffer */ + buffer = (int *)HDmalloc(sizeof(int) * length); + VRFY((buffer != NULL), "malloc of buffer succeeded"); + for(i = 0; i < length; i++) + buffer[i] = i; + + /* Set up the dxpl for the write */ + dxpl_write = H5Pcreate(H5P_DATASET_XFER); + VRFY((dxpl_write >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded"); + + if(is_independent) { + /* Set Independent I/O */ + ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_INDEPENDENT); + VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); + } + else { + /* Set Collective I/O */ + ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_COLLECTIVE); + VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); + + } + + if (selection_mode & TEST_DATA_TRANSFORMS) { + ret = H5Pset_data_transform (dxpl_write, "x+1"); + VRFY((ret >= 0), "H5Pset_data_transform succeeded"); + } + + /*--------------------- + * Test Write access + *---------------------*/ + + /* Write */ + ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl_write, buffer); + if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout); + VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded"); + + + /* Get the cause of broken collective I/O */ + ret = H5Pget_mpio_no_collective_cause (dxpl_write, &no_collective_cause_local_write, &no_collective_cause_global_write); + VRFY((ret >= 0), "retriving no collective cause succeeded" ); + + /* Wait for file to be written */ + MPI_Barrier(MPI_COMM_WORLD); + + /*--------------------- + * Test Read access + *---------------------*/ + + /* Make a copy of the dxpl to test the read operation */ + dxpl_read = H5Pcopy(dxpl_write); + VRFY((dxpl_read >= 0), "H5Pcopy succeeded"); + + /* Read */ + ret = H5Dread(dataset, data_type, mem_space, file_space, dxpl_read, buffer); + + if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout); + VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded"); + + /* Get the cause of broken collective I/O */ + ret = H5Pget_mpio_no_collective_cause (dxpl_read, &no_collective_cause_local_read, &no_collective_cause_global_read); + VRFY((ret >= 0), "retriving no collective cause succeeded" ); + + /* Check write vs read */ + VRFY((no_collective_cause_local_read == no_collective_cause_local_write), + "reading and writing are the same for local cause of Broken Collective I/O"); + VRFY((no_collective_cause_global_read == no_collective_cause_global_write), + "reading and writing are the same for global cause of Broken Collective I/O"); + + /* Test values */ + if(no_collective_cause_local_expected != (unsigned) -1 && no_collective_cause_global_expected != (unsigned) -1) { + char message[100]; + sprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name); + VRFY((no_collective_cause_local_write == no_collective_cause_local_expected), message); + sprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name); + VRFY((no_collective_cause_global_write == no_collective_cause_global_expected), message); + } else { + HDfprintf(stderr, "%s %d -> (%d,%d)\n", test_name, mpi_rank, + test_no_collective_cause_mode, no_collective_cause_local_write); + } + + + /* clean up external file */ + if (selection_mode & TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL) + HDremove(FILE_EXTERNAL); + + /* Release some resources */ + if (sid) + H5Sclose(sid); + if (fapl) + H5Pclose(fapl); + if (dcpl) + H5Pclose(dcpl); + if (dxpl_write) + H5Pclose(dxpl_write); + if (dxpl_read) + H5Pclose(dxpl_read); + if (dataset) + H5Dclose(dataset); + if (mem_space) + H5Sclose(mem_space); + if (file_space) + H5Sclose(file_space); + if (fid) + H5Fclose(fid); + HDfree(buffer); + + return; +} + + +/* + * Function: test_no_collective_cause_mode_filter + * + * Purpose: + * Test specific for using filter as a caus of broken collective I/O and + * checks that the H5Pget_mpio_no_collective_cause properties in the DXPL + * have the correct values. + * + * NOTE: + * This is a temprary function. + * test_no_collective_cause_mode(TEST_FILTERS) will replace this when + * H5Dcreate and H5write support for mpio and filter feature. + * + * Input: + * TEST_FILTERS_READ: + * Test for using filter (checksum) as the cause of breaking collective I/O. + * + * Programmer: Jonathan Kim + * Date: Aug, 2012 + */ +static void +test_no_collective_cause_mode_filter(int selection_mode) +{ + int no_collective_cause_local_read = 0; + int no_collective_cause_local_expected = 0; + int no_collective_cause_global_read = 0; + int no_collective_cause_global_expected = 0; + + const char * filename; + const char * test_name; + hbool_t is_chunked=1; + int mpi_size = -1; + int mpi_rank = -1; + int length; + int * buffer; + int i; + MPI_Comm mpi_comm = MPI_COMM_NULL; + MPI_Info mpi_info = MPI_INFO_NULL; + hid_t fid = -1; + hid_t sid = -1; + hid_t dataset = -1; + hid_t data_type = H5T_NATIVE_INT; + hid_t fapl_write = -1; + hid_t fapl_read = -1; + hid_t dcpl = -1; + hid_t dxpl = -1; + hsize_t dims[RANK]; + hid_t mem_space = -1; + hid_t file_space = -1; + hsize_t chunk_dims[RANK]; + hbool_t use_gpfs = FALSE; + herr_t ret; +#ifdef H5_HAVE_FILTER_FLETCHER32 + H5Z_filter_t filter_info; +#endif + + + /* Create the dataset creation plist */ + dcpl = H5Pcreate(H5P_DATASET_CREATE); + VRFY((dcpl >= 0), "dataset creation plist created successfully"); + + if (selection_mode == TEST_FILTERS_READ ) { +#ifdef H5_HAVE_FILTER_FLETCHER32 + ret = H5Zfilter_avail(H5Z_FILTER_FLETCHER32); + VRFY ((ret >=0 ), "Fletcher32 filter is available.\n"); + + ret = H5Zget_filter_info (H5Z_FILTER_FLETCHER32, (unsigned int *) &filter_info); + VRFY ( ( (filter_info & H5Z_FILTER_CONFIG_ENCODE_ENABLED) || (filter_info & H5Z_FILTER_CONFIG_DECODE_ENABLED) ) , "Fletcher32 filter encoding and decoding available.\n"); + + ret = H5Pset_fletcher32(dcpl); + VRFY((ret >= 0),"set filter (flecher32) succeeded"); +#endif /* H5_HAVE_FILTER_FLETCHER32 */ + } + else { + VRFY(0, "Unexpected mode, only test for TEST_FILTERS_READ."); + } + + /* Create the basic Space */ + dims[0] = dim0; + dims[1] = dim1; + sid = H5Screate_simple (RANK, dims, NULL); + VRFY((sid >= 0), "H5Screate_simple succeeded"); + + /* Set up MPI parameters */ + MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); + MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); + + + HDassert(mpi_size >= 1); + + mpi_comm = MPI_COMM_WORLD; + mpi_info = MPI_INFO_NULL; + + filename = (const char *)GetTestParameters(); + HDassert(filename != NULL); + + /* Setup the file access template */ + fapl_write = create_faccess_plist(mpi_comm, mpi_info, FACC_DEFAULT, use_gpfs); + VRFY((fapl_write >= 0), "create_faccess_plist() succeeded"); + + fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_write); + VRFY((fid >= 0), "H5Fcreate succeeded"); + + /* If we are not testing contiguous datasets */ + if(is_chunked) { + /* Set up chunk information. */ + chunk_dims[0] = dims[0]/mpi_size; + chunk_dims[1] = dims[1]; + ret = H5Pset_chunk(dcpl, 2, chunk_dims); + VRFY((ret >= 0),"chunk creation property list succeeded"); + } + + + /* Create the dataset */ + dataset = H5Dcreate2(fid, DSET_NOCOLCAUSE, data_type, sid, H5P_DEFAULT, + dcpl, H5P_DEFAULT); + VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded"); + +#ifdef H5_HAVE_FILTER_FLETCHER32 + /* Set expected cause */ + test_name = "Broken Collective I/O - Filter is required"; + no_collective_cause_local_expected = H5D_MPIO_FILTERS; + no_collective_cause_global_expected = H5D_MPIO_FILTERS; +#endif + + /* Ignore above expected cause and reset cause to MPIPOSIX if + * the MPI_POSIX driver is in use.*/ + if (facc_type == FACC_MPIPOSIX) { + no_collective_cause_local_expected = H5D_MPIO_SET_MPIPOSIX; + no_collective_cause_global_expected = H5D_MPIO_SET_MPIPOSIX; + } + + /* Get the file dataspace */ + file_space = H5Dget_space(dataset); + VRFY((file_space >= 0), "H5Dget_space succeeded"); + + /* Create the memory dataspace */ + mem_space = H5Screate_simple (RANK, dims, NULL); + VRFY((mem_space >= 0), "mem_space created"); + + /* Get the number of elements in the selection */ + length = dim0 * dim1; + + /* Allocate and initialize the buffer */ + buffer = (int *)HDmalloc(sizeof(int) * length); + VRFY((buffer != NULL), "malloc of buffer succeeded"); + for(i = 0; i < length; i++) + buffer[i] = i; + + /* Set up the dxpl for the write */ + dxpl = H5Pcreate(H5P_DATASET_XFER); + VRFY((dxpl >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded"); + + if (selection_mode == TEST_FILTERS_READ) { + /* To test read in collective I/O mode , write in independent mode + * because write fails with mpio + filter */ + ret = H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_INDEPENDENT); + VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); + } + else { + /* To test write in collective I/O mode. */ + ret = H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE); + VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); + } + + + /* Write */ + ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl, buffer); + + if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout); + VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded"); + + + /* Make a copy of the dxpl to test the read operation */ + dxpl = H5Pcopy(dxpl); + VRFY((dxpl >= 0), "H5Pcopy succeeded"); + + if (dataset) + H5Dclose(dataset); + if (fapl_write) + H5Pclose(fapl_write); + if (fid) + H5Fclose(fid); + + /* Wait for file to be written */ + MPI_Barrier(MPI_COMM_WORLD); + + /*--------------------- + * Test Read access + *---------------------*/ + + /* Setup the file access template */ + fapl_read = create_faccess_plist(mpi_comm, mpi_info, facc_type, use_gpfs); + VRFY((fapl_read >= 0), "create_faccess_plist() succeeded"); + + fid = H5Fopen (filename, H5F_ACC_RDONLY, fapl_read); + dataset = H5Dopen (fid, DSET_NOCOLCAUSE, H5P_DEFAULT); + + /* Set collective I/O properties in the dxpl. */ + ret = H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE); + VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded"); + + /* Read */ + ret = H5Dread(dataset, data_type, mem_space, file_space, dxpl, buffer); + + if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout); + VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded"); + + /* Get the cause of broken collective I/O */ + ret = H5Pget_mpio_no_collective_cause (dxpl, &no_collective_cause_local_read, &no_collective_cause_global_read); + VRFY((ret >= 0), "retriving no collective cause succeeded" ); + + /* Test values */ + if(no_collective_cause_local_expected != (unsigned) -1 && no_collective_cause_global_expected != (unsigned) -1) { + char message[100]; + sprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name); + VRFY((no_collective_cause_local_read == no_collective_cause_local_expected), message); + sprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name); + VRFY((no_collective_cause_global_read == no_collective_cause_global_expected), message); + } else { + HDfprintf(stderr, "%s %d -> (%d,%d)\n", test_name, mpi_rank, + test_no_collective_cause_mode_filter, no_collective_cause_local_read); + } + + /* Release some resources */ + if (sid) + H5Sclose(sid); + if (fapl_read) + H5Pclose(fapl_read); + if (dcpl) + H5Pclose(dcpl); + if (dxpl) + H5Pclose(dxpl); + if (dataset) + H5Dclose(dataset); + if (mem_space) + H5Sclose(mem_space); + if (file_space) + H5Sclose(file_space); + if (fid) + H5Fclose(fid); + HDfree(buffer); + return; +} + +/* Function: no_collective_cause_tests + * + * Purpose: Tests cases for broken collective IO. + * + * Programmer: Jonathan Kim + * Date: Aug, 2012 + */ +void +no_collective_cause_tests(void) +{ + int mpi_size = -1; + int mpi_rank = -1; + MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); + MPI_Comm_size(MPI_COMM_WORLD, &mpi_rank); + + /* + * Test individual cause + */ + test_no_collective_cause_mode (TEST_COLLECTIVE); + test_no_collective_cause_mode (TEST_SET_INDEPENDENT); + test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION); + test_no_collective_cause_mode (TEST_DATA_TRANSFORMS); + test_no_collective_cause_mode (TEST_SET_MPIPOSIX); + test_no_collective_cause_mode (TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES); + test_no_collective_cause_mode (TEST_POINT_SELECTIONS); + test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT); + test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL); +#ifdef H5_HAVE_FILTER_FLETCHER32 + /* TODO: use this instead of below TEST_FILTERS_READ when H5Dcreate and + * H5Dwrite is ready for mpio + filter feature. + */ + /* test_no_collective_cause_mode (TEST_FILTERS); */ + test_no_collective_cause_mode_filter (TEST_FILTERS_READ); +#endif + + /* + * Test combined causes + */ + test_no_collective_cause_mode (TEST_SET_MPIPOSIX | TEST_DATATYPE_CONVERSION); + test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS); + test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS | TEST_POINT_SELECTIONS); + + return; +} + /* * Test consistency semantics of atomic mode */ @@ -3088,8 +3772,12 @@ dataset_atomicity(void) dim0 = 64; dim1 = 32; filename = GetTestParameters(); + if (facc_type != FACC_MPIO) { + printf("Atomicity tests will not work without the MPIO VFD\n"); + return; + } if(VERBOSE_MED) - printf("Independent write test on file %s\n", filename); + printf("atomic writes to file %s\n", filename); /* set up MPI parameters */ MPI_Comm_size(MPI_COMM_WORLD,&mpi_size); diff --git a/testpar/testph5.sh.in b/testpar/testph5.sh.in index f78cfac..83327ca 100644 --- a/testpar/testph5.sh.in +++ b/testpar/testph5.sh.in @@ -25,11 +25,6 @@ TEST_APP_BIN=`pwd`/$TEST_APP # The path of the tool binary nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". # diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c index f27d09b..a4df46e 100644 --- a/testpar/testphdf5.c +++ b/testpar/testphdf5.c @@ -506,6 +506,10 @@ int main(int argc, char **argv) "test actual io mode proprerty", PARATESTFILE); + AddTest("nocolcause", no_collective_cause_tests, NULL, + "test cause for broken collective io", + PARATESTFILE); + if((mpi_size < 2) && MAINPROCESS) { printf("File Image Ops daisy chain test needs at least 2 processes.\n"); printf("File Image Ops daisy chain test will be skipped \n"); @@ -513,16 +517,6 @@ int main(int argc, char **argv) AddTest((mpi_size < 2)? "-fiodc" : "fiodc", file_image_daisy_chain_test, NULL, "file image ops daisy chain", NULL); - /* Display testing information */ - TestInfo(argv[0]); - - /* setup file access property list */ - fapl = H5Pcreate (H5P_FILE_ACCESS); - H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL); - - /* Parse command line arguments */ - TestParseCmdLine(argc, argv); - if((mpi_size < 2)&& MAINPROCESS ) { printf("Atomicity tests need at least 2 processes to participate\n"); printf("8 is more recommended.. Atomicity tests will be skipped \n"); @@ -535,6 +529,16 @@ int main(int argc, char **argv) "dataset atomic updates", PARATESTFILE); } + /* Display testing information */ + TestInfo(argv[0]); + + /* setup file access property list */ + fapl = H5Pcreate (H5P_FILE_ACCESS); + H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL); + + /* Parse command line arguments */ + TestParseCmdLine(argc, argv); + if (facc_type == FACC_MPIPOSIX && MAINPROCESS){ printf("===================================\n" " Using MPIPOSIX driver\n" diff --git a/testpar/testphdf5.h b/testpar/testphdf5.h index da11c62..29ad411 100644 --- a/testpar/testphdf5.h +++ b/testpar/testphdf5.h @@ -175,6 +175,21 @@ enum H5TEST_COLL_CHUNK_API {API_NONE=0,API_LINK_HARD, #define TEST_ACTUAL_IO_LINK_CHUNK 9 #define TEST_ACTUAL_IO_CONTIGUOUS 10 +/* Definitions of the selection mode for the no_collective_cause_tests function. */ +#define TEST_COLLECTIVE 0x001 +#define TEST_SET_INDEPENDENT 0x002 +#define TEST_DATATYPE_CONVERSION 0x004 +#define TEST_DATA_TRANSFORMS 0x008 +#define TEST_SET_MPIPOSIX 0x010 +#define TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES 0x020 +#define TEST_POINT_SELECTIONS 0x040 +#define TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT 0x080 +#define TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL 0x100 +#define TEST_FILTERS 0x200 +/* TEST_FILTERS will take place of this after supporting mpio + filter for + * H5Dcreate and H5Dwrite */ +#define TEST_FILTERS_READ 0x400 + /* Don't erase these lines, they are put here for debugging purposes */ /* #define MSPACE1_RANK 1 @@ -239,6 +254,7 @@ void extend_readInd(void); void extend_readAll(void); void none_selection_chunk(void); void actual_io_mode_tests(void); +void no_collective_cause_tests(void); void test_chunk_alloc(void); void test_filter_read(void); void compact_dataset(void); diff --git a/tools/Makefile.in b/tools/Makefile.in index 70cc001..70e11ae 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # Tools HDF5 Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,24 +67,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = tools ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -78,6 +101,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -85,8 +113,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ @@ -114,7 +144,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -132,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -411,6 +438,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -439,6 +470,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -456,12 +488,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -471,7 +503,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -485,37 +521,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -524,6 +529,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -587,6 +596,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -622,13 +645,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -664,10 +684,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -747,21 +772,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs installdirs-am \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags tags-recursive uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am tags \ + tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -779,7 +806,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -805,7 +832,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -829,7 +856,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -839,7 +866,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -929,7 +956,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -959,7 +986,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt index 94eb732..95341a2 100644 --- a/tools/h5copy/CMakeLists.txt +++ b/tools/h5copy/CMakeLists.txt @@ -375,7 +375,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am index dd0c5c3..47e8685 100644 --- a/tools/h5copy/Makefile.am +++ b/tools/h5copy/Makefile.am @@ -25,7 +25,8 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG=h5copygentest -TEST_SCRIPT=$(srcdir)/testh5copy.sh +TEST_SCRIPT=testh5copy.sh + check_SCRIPTS=$(TEST_SCRIPT) SCRIPT_DEPEND=h5copy$(EXEEXT) diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index b71ee70..da9d0b7 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5copy.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5copy$(EXEEXT) check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5copy ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = testh5copy.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5copygentest$(EXEEXT) @@ -73,9 +91,10 @@ h5copy_SOURCES = h5copy.c h5copy_OBJECTS = h5copy.$(OBJEXT) h5copy_LDADD = $(LDADD) h5copy_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5copy_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5copy_LDFLAGS) $(LDFLAGS) -o $@ @@ -83,6 +102,18 @@ am_h5copygentest_OBJECTS = h5copygentest.$(OBJEXT) h5copygentest_OBJECTS = $(am_h5copygentest_OBJECTS) h5copygentest_LDADD = $(LDADD) h5copygentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -93,30 +124,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5copy.c $(h5copygentest_SOURCES) DIST_SOURCES = h5copy.c $(h5copygentest_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -134,12 +168,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -406,7 +437,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG = h5copygentest -TEST_SCRIPT = $(srcdir)/testh5copy.sh +TEST_SCRIPT = testh5copy.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5copy$(EXEEXT) @@ -430,6 +461,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -459,6 +494,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -468,10 +504,15 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +testh5copy.sh: $(top_builddir)/config.status $(srcdir)/testh5copy.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -520,10 +561,10 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) +h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) $(EXTRA_h5copy_DEPENDENCIES) @rm -f h5copy$(EXEEXT) $(AM_V_CCLD)$(h5copy_LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS) -h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) +h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) $(EXTRA_h5copygentest_DEPENDENCIES) @rm -f h5copygentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5copygentest_OBJECTS) $(h5copygentest_LDADD) $(LIBS) @@ -539,26 +580,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -615,6 +653,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -667,10 +719,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -757,7 +814,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -786,7 +843,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -812,7 +869,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -836,7 +893,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -846,7 +903,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -936,7 +993,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -966,7 +1023,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh.in index 0529d53..c7acd9a 100644 --- a/tools/h5copy/testh5copy.sh +++ b/tools/h5copy/testh5copy.sh.in @@ -19,10 +19,7 @@ # Thursday, July 20, 2006 # -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi +srcdir=@srcdir@ # source dirs SRC_TOOLS="$srcdir/.." @@ -76,6 +73,9 @@ H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes @@ -105,17 +105,26 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile." - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } + # Print a "SKIP" message SKIP() { TESTING $H5COPY $@ diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index 3357b97..994a6f2 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -202,6 +202,7 @@ IF (BUILD_TESTING) ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_56.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_57.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_58.txt + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_59.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_500.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_501.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_502.txt @@ -702,6 +703,8 @@ IF (BUILD_TESTING) h5diff_57.out.err h5diff_58.out h5diff_58.out.err + h5diff_59.out + h5diff_59.out.err h5diff_500.out h5diff_500.out.err h5diff_501.out @@ -960,6 +963,10 @@ ADD_H5_TEST (h5diff_57 0 -v ${FILE4} ${FILE4} dset7a dset7b) # 5.8 (region reference) ADD_H5_TEST (h5diff_58 1 -v ${FILE7} ${FILE8} refreg) +# test for both dset and attr with same type but with different size +# ( HDDFV-7942 ) +ADD_H5_TEST (h5diff_59 0 -v ${FILE4} ${FILE4} dset11a dset11b) + # ############################################################################## # # Error messages # ############################################################################## @@ -1429,7 +1436,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS @@ -1442,7 +1449,7 @@ INSTALL ( IF (H5_HAVE_PARALLEL) - INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) + #INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am index 0b8816f..190c083 100644 --- a/tools/h5diff/Makefile.am +++ b/tools/h5diff/Makefile.am @@ -27,7 +27,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # is enabled. if BUILD_PARALLEL_CONDITIONAL H5PDIFF=ph5diff - TEST_SCRIPT_PARA=$(srcdir)/testph5diff.sh + TEST_SCRIPT_PARA=testph5diff.sh endif # Our main target, h5diff @@ -38,7 +38,7 @@ h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # Test programs and scripts TEST_PROG=h5diffgentest -TEST_SCRIPT=$(srcdir)/testh5diff.sh +TEST_SCRIPT=testh5diff.sh check_PROGRAMS=$(TEST_PROG) check_SCRIPTS=$(TEST_SCRIPT) $(TEST_SCRIPT_PARA) diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 25884b2..4676341 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5diff.sh.in $(srcdir)/testph5diff.sh.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5diff$(EXEEXT) $(am__EXEEXT_1) check_PROGRAMS = $(am__EXEEXT_2) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_2) $(TEST_SCRIPT) subdir = tools/h5diff ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = testh5diff.sh testph5diff.sh CONFIG_CLEAN_VPATH_FILES = @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT) am__installdirs = "$(DESTDIR)$(bindir)" @@ -74,9 +92,10 @@ am_h5diff_OBJECTS = h5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) h5diff_OBJECTS = $(am_h5diff_OBJECTS) h5diff_LDADD = $(LDADD) h5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5diff_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5diff_LDFLAGS) $(LDFLAGS) -o $@ @@ -88,6 +107,18 @@ am_ph5diff_OBJECTS = ph5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) ph5diff_OBJECTS = $(am_ph5diff_OBJECTS) ph5diff_LDADD = $(LDADD) ph5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -98,32 +129,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) DIST_SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -141,12 +175,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -415,14 +446,14 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Always build and test h5diff but build and test ph5diff only if parallel # is enabled. @BUILD_PARALLEL_CONDITIONAL_TRUE@H5PDIFF = ph5diff -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh +@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = testph5diff.sh # Add h5diff specific linker flags here h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # Test programs and scripts TEST_PROG = h5diffgentest -TEST_SCRIPT = $(srcdir)/testh5diff.sh +TEST_SCRIPT = testh5diff.sh check_SCRIPTS = $(TEST_SCRIPT) $(TEST_SCRIPT_PARA) # The parallel test script testph5diff.sh actually depends on testh5diff.sh. SCRIPT_DEPEND = h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh @@ -446,6 +477,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -475,6 +510,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -484,10 +520,17 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +testh5diff.sh: $(top_builddir)/config.status $(srcdir)/testh5diff.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +testph5diff.sh: $(top_builddir)/config.status $(srcdir)/testph5diff.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -536,13 +579,13 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) +h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) $(EXTRA_h5diff_DEPENDENCIES) @rm -f h5diff$(EXEEXT) $(AM_V_CCLD)$(h5diff_LINK) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS) -h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) +h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) $(EXTRA_h5diffgentest_DEPENDENCIES) @rm -f h5diffgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5diffgentest_OBJECTS) $(h5diffgentest_LDADD) $(LIBS) -ph5diff$(EXEEXT): $(ph5diff_OBJECTS) $(ph5diff_DEPENDENCIES) +ph5diff$(EXEEXT): $(ph5diff_OBJECTS) $(ph5diff_DEPENDENCIES) $(EXTRA_ph5diff_DEPENDENCIES) @rm -f ph5diff$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ph5diff_OBJECTS) $(ph5diff_LDADD) $(LIBS) @@ -560,26 +603,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -636,6 +676,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -688,10 +742,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -778,7 +837,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -807,7 +866,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -833,7 +892,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -857,7 +916,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -867,7 +926,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -957,7 +1016,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -987,7 +1046,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index c370f79..7c69154 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -759,6 +759,7 @@ int test_datatypes(const char *fname) { hid_t fid1; + hid_t dset; hsize_t dims[2]={3,2}; herr_t status; char buf1a[3][2] = {{1,1},{1,1},{1,1}}; @@ -790,6 +791,9 @@ int test_datatypes(const char *fname) unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; + unsigned short buf11a[3][2] = {{204,205},{2,3},{1,1}}; + unsigned int buf11b[3][2] = {{204,205},{2,3},{1,1}}; + /*------------------------------------------------------------------------- * Create a file @@ -880,6 +884,19 @@ int test_datatypes(const char *fname) write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); + /*------------------------------------------------------------------------- + * Same type class, different size + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset11a",H5T_STD_U16LE,buf11a); + dset=H5Dopen2 (fid1, "dset11a", H5P_DEFAULT); + write_attr(dset,2,dims,"attr",H5T_STD_U16LE,buf11a); + H5Dclose (dset); + + write_dset(fid1,2,dims,"dset11b",H5T_STD_U32LE,buf11b); + dset=H5Dopen2 (fid1, "dset11b", H5P_DEFAULT); + write_attr(dset,2,dims,"attr",H5T_STD_U32LE,buf11b); + H5Dclose (dset); /*------------------------------------------------------------------------- * Close diff --git a/tools/h5diff/testfiles/h5diff_59.txt b/tools/h5diff/testfiles/h5diff_59.txt new file mode 100644 index 0000000..aeefa3a --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_59.txt @@ -0,0 +1,11 @@ +dataset: </dset11a> and </dset11b> +Warning: different storage datatype +</dset11a> has file datatype H5T_STD_U16LE +</dset11b> has file datatype H5T_STD_U32LE +Warning: different storage datatype +<attr> has file datatype H5T_STD_U16LE +<attr> has file datatype H5T_STD_U32LE +attribute: <attr of </dset11a>> and <attr of </dset11b>> +0 differences found +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_dtypes.h5 b/tools/h5diff/testfiles/h5diff_dtypes.h5 Binary files differindex 7c3cd9d..ffa5264 100644 --- a/tools/h5diff/testfiles/h5diff_dtypes.h5 +++ b/tools/h5diff/testfiles/h5diff_dtypes.h5 diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh.in index a208acf..3455287 100755..100644 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh.in @@ -29,7 +29,7 @@ # Added test 400 - 425 (links with --follow-symlinks option) # Added test 450 - 459 (dangling links) - +srcdir=@srcdir@ TESTNAME=h5diff EXIT_SUCCESS=0 @@ -41,6 +41,9 @@ H5DIFF_BIN=`pwd`/$H5DIFF # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes @@ -48,11 +51,6 @@ h5haveexitcode=yes # default is yes pmode= # default to run h5diff tests mydomainname=`domainname 2>/dev/null` -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -231,6 +229,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_55.txt $SRC_H5DIFF_TESTFILES/h5diff_56.txt $SRC_H5DIFF_TESTFILES/h5diff_57.txt $SRC_H5DIFF_TESTFILES/h5diff_58.txt +$SRC_H5DIFF_TESTFILES/h5diff_59.txt $SRC_H5DIFF_TESTFILES/h5diff_500.txt $SRC_H5DIFF_TESTFILES/h5diff_501.txt $SRC_H5DIFF_TESTFILES/h5diff_502.txt @@ -318,12 +317,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - $CP -f $tstfile $TESTDIR - if [ $? -ne 0 ]; then - echo "Error: FAILED to copy $tstfile ." + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." - # Comment out this to CREATE expected file - exit $EXIT_FAILURE + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done @@ -615,6 +622,10 @@ TOOLTEST h5diff_57.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset7a dset7b # 5.8 (region reference) TOOLTEST h5diff_58.txt -v h5diff_dset1.h5 h5diff_dset2.h5 refreg +# test for both dset and attr with same type but with different size +# ( HDDFV-7942 ) +TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b + # ############################################################################## # # Error messages # ############################################################################## @@ -825,14 +836,7 @@ TOOLTEST h5diff_221.txt -c non_comparables1.h5 non_comparables2.h5 /g2 # entire file # All the comparables should display differences. -if test -n "$pmode"; then - # parallel mode: - # skip due to ph5diff hangs on koala (linux64-LE) and ember intermittently. - # (HDFFV-8003 - TBD) - SKIP -c non_comparables1.h5 non_comparables2.h5 -else - TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5 -fi +TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5 # non-comparable test for common objects (same name) with different object types # (HDFFV-7644) diff --git a/tools/h5diff/testph5diff.sh b/tools/h5diff/testph5diff.sh.in index c619ab5..ca212a1 100755..100644 --- a/tools/h5diff/testph5diff.sh +++ b/tools/h5diff/testph5diff.sh.in @@ -14,16 +14,13 @@ # access to either file, you may request a copy from help@hdfgroup.org. # -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi +srcdir=@srcdir@ TESTNAME=ph5diff EXIT_SUCCESS=0 EXIT_FAILURE=1 -TOOL=${srcdir}/testh5diff.sh +TOOL=testh5diff.sh nerrors=0 diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 02327b4..0327949 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -781,16 +781,6 @@ IF (BUILD_TESTING) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_XML_H5_TEST file) - # -------------------------------------------------------------------- - # Determine which filters are available - # -------------------------------------------------------------------- - SET (USE_FILTER_SZIP H5_HAVE_FILTER_SZIP) - SET (USE_FILTER_DEFLATE H5_HAVE_FILTER_DEFLATE) - SET (USE_FILTER_SHUFFLE H5_HAVE_FILTER_SHUFFLE) - SET (USE_FILTER_FLETCHER32 H5_HAVE_FILTER_FLETCHER32) - SET (USE_FILTER_NBIT H5_HAVE_FILTER_NBIT) - SET (USE_FILTER_SCALEOFFSET H5_HAVE_FILTER_SCALEOFFSET) - ############################################################################## ############################################################################## ### T H E T E S T S HDF5_ENABLE_USING_MEMCHECKER ### @@ -1280,53 +1270,25 @@ IF (BUILD_TESTING) # tests for filters # SZIP - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SZIP) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SZIP) - ADD_SKIP_H5_TEST (tszip 0 ${TESTTYPE} --enable-error-stack -H -p -d szip tfilters.h5) + ADD_H5_TEST (tszip 0 --enable-error-stack -H -p -d szip tfilters.h5) # deflate - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_DEFLATE) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_DEFLATE) - ADD_SKIP_H5_TEST (tdeflate 0 ${TESTTYPE} --enable-error-stack -H -p -d deflate tfilters.h5) + ADD_H5_TEST (tdeflate 0 --enable-error-stack -H -p -d deflate tfilters.h5) # shuffle - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SHUFFLE) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SHUFFLE) - ADD_SKIP_H5_TEST (tshuffle 0 ${TESTTYPE} --enable-error-stack -H -p -d shuffle tfilters.h5) + ADD_H5_TEST (tshuffle 0 --enable-error-stack -H -p -d shuffle tfilters.h5) # fletcher32 - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_FLETCHER32) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_FLETCHER32) - ADD_SKIP_H5_TEST (tfletcher32 0 ${TESTTYPE} --enable-error-stack -H -p -d fletcher32 tfilters.h5) + ADD_H5_TEST (tfletcher32 0 --enable-error-stack -H -p -d fletcher32 tfilters.h5) # nbit - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_NBIT) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_NBIT) - ADD_SKIP_H5_TEST (tnbit 0 ${TESTTYPE} --enable-error-stack -H -p -d nbit tfilters.h5) + ADD_H5_TEST (tnbit 0 --enable-error-stack -H -p -d nbit tfilters.h5) # scaleoffset - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SCALEOFFSET) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SCALEOFFSET) - ADD_SKIP_H5_TEST (tscaleoffset 0 ${TESTTYPE} --enable-error-stack -H -p -d scaleoffset tfilters.h5) + ADD_H5_TEST (tscaleoffset 0 --enable-error-stack -H -p -d scaleoffset tfilters.h5) # all - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) - ADD_SKIP_H5_TEST (tallfilters 0 ${TESTTYPE} --enable-error-stack -H -p -d all tfilters.h5) + ADD_H5_TEST (tallfilters 0 --enable-error-stack -H -p -d all tfilters.h5) # user defined ADD_H5_TEST (tuserfilter 0 --enable-error-stack -H -p -d myfilter tfilters.h5) @@ -1938,7 +1900,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5dump ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5dump ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 0c45a72..6b4a6e6 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,14 +69,16 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/testh5dump.sh.in $(srcdir)/testh5dumppbits.sh.in \ - $(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) binread$(EXEEXT) bin_PROGRAMS = h5dump$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5dump ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -74,9 +92,10 @@ binread_SOURCES = binread.c binread_OBJECTS = binread.$(OBJEXT) binread_LDADD = $(LDADD) binread_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am_h5dump_OBJECTS = h5dump.$(OBJEXT) h5dump_ddl.$(OBJEXT) \ h5dump_xml.$(OBJEXT) h5dump_OBJECTS = $(am_h5dump_OBJECTS) @@ -89,6 +108,18 @@ h5dumpgentest_SOURCES = h5dumpgentest.c h5dumpgentest_OBJECTS = h5dumpgentest.$(OBJEXT) h5dumpgentest_LDADD = $(LDADD) h5dumpgentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -99,30 +130,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = binread.c $(h5dump_SOURCES) h5dumpgentest.c DIST_SOURCES = binread.c $(h5dump_SOURCES) h5dumpgentest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -140,12 +174,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -437,6 +468,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -466,6 +501,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -483,8 +519,11 @@ testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -533,13 +572,13 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -binread$(EXEEXT): $(binread_OBJECTS) $(binread_DEPENDENCIES) +binread$(EXEEXT): $(binread_OBJECTS) $(binread_DEPENDENCIES) $(EXTRA_binread_DEPENDENCIES) @rm -f binread$(EXEEXT) $(AM_V_CCLD)$(LINK) $(binread_OBJECTS) $(binread_LDADD) $(LIBS) -h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) +h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) $(EXTRA_h5dump_DEPENDENCIES) @rm -f h5dump$(EXEEXT) $(AM_V_CCLD)$(h5dump_LINK) $(h5dump_OBJECTS) $(h5dump_LDADD) $(LIBS) -h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) +h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) $(EXTRA_h5dumpgentest_DEPENDENCIES) @rm -f h5dumpgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5dumpgentest_OBJECTS) $(h5dumpgentest_LDADD) $(LIBS) @@ -558,26 +597,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -634,6 +670,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -686,10 +736,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -777,7 +832,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -806,7 +861,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -832,7 +887,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -856,7 +911,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -866,7 +921,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -956,7 +1011,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -986,7 +1041,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 23fd1d9..2921fb9 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -233,23 +233,23 @@ usage(const char *prog) HDfflush(rawoutstream); HDfprintf(rawoutstream, "usage: %s [OPTIONS] files\n", prog); HDfprintf(rawoutstream, " OPTIONS\n"); - HDfprintf(rawoutstream, " -h, --help Print a usage message and exit\n"); - HDfprintf(rawoutstream, " -n, --contents Print a list of the file contents and exit\n"); + HDfprintf(rawoutstream, " -h, --help Print a usage message and exit\n"); + HDfprintf(rawoutstream, " -n, --contents Print a list of the file contents and exit\n"); HDfprintf(rawoutstream, " Optional value 1 also prints attributes.\n"); - HDfprintf(rawoutstream, " -B, --superblock Print the content of the super block\n"); - HDfprintf(rawoutstream, " -H, --header Print the header only; no data is displayed\n"); - HDfprintf(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n"); - HDfprintf(rawoutstream, " -i, --object-ids Print the object ids\n"); - HDfprintf(rawoutstream, " -r, --string Print 1-byte integer datasets as ASCII\n"); - HDfprintf(rawoutstream, " -e, --escape Escape non printing characters\n"); - HDfprintf(rawoutstream, " -V, --version Print version number and exit\n"); + HDfprintf(rawoutstream, " -B, --superblock Print the content of the super block\n"); + HDfprintf(rawoutstream, " -H, --header Print the header only; no data is displayed\n"); + HDfprintf(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n"); + HDfprintf(rawoutstream, " -i, --object-ids Print the object ids\n"); + HDfprintf(rawoutstream, " -r, --string Print 1-byte integer datasets as ASCII\n"); + HDfprintf(rawoutstream, " -e, --escape Escape non printing characters\n"); + HDfprintf(rawoutstream, " -V, --version Print version number and exit\n"); HDfprintf(rawoutstream, " -a P, --attribute=P Print the specified attribute\n"); HDfprintf(rawoutstream, " If an attribute name contains a slash (/), escape the\n"); HDfprintf(rawoutstream, " slash with a preceding backslash (\\).\n"); HDfprintf(rawoutstream, " (See example section below.)\n"); HDfprintf(rawoutstream, " -d P, --dataset=P Print the specified dataset\n"); - HDfprintf(rawoutstream, " -y, --noindex Do not print array indices with the data\n"); - HDfprintf(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n"); + HDfprintf(rawoutstream, " -y, --noindex Do not print array indices with the data\n"); + HDfprintf(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n"); HDfprintf(rawoutstream, " -f D, --filedriver=D Specify which driver to open the file with\n"); HDfprintf(rawoutstream, " -g P, --group=P Print the specified group and all members\n"); HDfprintf(rawoutstream, " -l P, --soft-link=P Print the value(s) of the specified soft link\n"); @@ -270,17 +270,17 @@ usage(const char *prog) " the data value and length is the number of bits of\n" " the mask.\n" ); - HDfprintf(rawoutstream, " -R, --region Print dataset pointed by region references\n"); - HDfprintf(rawoutstream, " -x, --xml Output in XML using Schema\n"); - HDfprintf(rawoutstream, " -u, --use-dtd Output in XML using DTD\n"); + HDfprintf(rawoutstream, " -R, --region Print dataset pointed by region references\n"); + HDfprintf(rawoutstream, " -x, --xml Output in XML using Schema\n"); + HDfprintf(rawoutstream, " -u, --use-dtd Output in XML using DTD\n"); HDfprintf(rawoutstream, " -D U, --xml-dtd=U Use the DTD or schema at U\n"); - HDfprintf(rawoutstream, " -X S, --xml-ns=S (XML Schema) Use qualified names n the XML\n"); + HDfprintf(rawoutstream, " -X S, --xml-ns=S (XML Schema) Use qualified names n the XML\n"); HDfprintf(rawoutstream, " \":\": no namespace, default: \"hdf5:\"\n"); HDfprintf(rawoutstream, " E.g., to dump a file called `-f', use h5dump -- -f\n"); HDfprintf(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n"); HDfprintf(rawoutstream, " occur.\n"); HDfprintf(rawoutstream, " --no-compact-subset Disable compact form of subsetting and allow the use\n"); - HDfprintf(rawoutstream, " of \"[\" in datset names.\n"); + HDfprintf(rawoutstream, " of \"[\" in dataset names.\n"); HDfprintf(rawoutstream, "\n"); HDfprintf(rawoutstream, " Subsetting is available by using the following options with a dataset\n"); HDfprintf(rawoutstream, " attribute. Subsetting is done by selecting a hyperslab from the data.\n"); @@ -294,7 +294,8 @@ usage(const char *prog) HDfprintf(rawoutstream, " -c COUNT, --count=COUNT Number of blocks to include in selection\n"); HDfprintf(rawoutstream, " -k BLOCK, --block=BLOCK Size of block in hyperslab\n"); HDfprintf(rawoutstream, " START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the\n"); - HDfprintf(rawoutstream, " number of dimensions in the dataspace being queried\n"); + HDfprintf(rawoutstream, " number of dimensions in the dataspace being queried\n"); + HDfprintf(rawoutstream, " (Alternate compact form of subsetting is described in the Reference Manual)\n"); HDfprintf(rawoutstream, "\n"); HDfprintf(rawoutstream, " D - is the file driver to use in opening the file. Acceptable values\n"); HDfprintf(rawoutstream, " are \"sec2\", \"family\", \"split\", \"multi\", \"direct\", and \"stream\". Without\n"); diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index fa71558..2373f6f 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -15,13 +15,7 @@ # # Tests for the h5dump tool -# Determine which filters are available -USE_FILTER_SZIP="@USE_FILTER_SZIP@" -USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" -USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" -USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@" -USE_FILTER_NBIT="@USE_FILTER_NBIT@" -USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@" +srcdir=@srcdir@ TESTNAME=h5dump EXIT_SUCCESS=0 @@ -40,14 +34,13 @@ H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -351,18 +344,25 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } - # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". # @@ -871,54 +871,19 @@ TOOLTEST texceedsubblock.ddl --enable-error-stack -d 1d -k 1,3 taindices.h5 # tests for filters # SZIP -option="--enable-error-stack -H -p -d szip tfilters.h5" -if test $USE_FILTER_SZIP != "yes"; then - SKIP $option -else -TOOLTEST tszip.ddl $option -fi +TOOLTEST tszip.ddl --enable-error-stack -H -p -d szip tfilters.h5 # deflate -option="--enable-error-stack -H -p -d deflate tfilters.h5" -if test $USE_FILTER_DEFLATE != "yes"; then - SKIP $option -else - TOOLTEST tdeflate.ddl $option -fi +TOOLTEST tdeflate.ddl --enable-error-stack -H -p -d deflate tfilters.h5 # shuffle -option="--enable-error-stack -H -p -d shuffle tfilters.h5" -if test $USE_FILTER_SHUFFLE != "yes"; then - SKIP $option -else - TOOLTEST tshuffle.ddl $option -fi +TOOLTEST tshuffle.ddl --enable-error-stack -H -p -d shuffle tfilters.h5 # fletcher32 -option="--enable-error-stack -H -p -d fletcher32 tfilters.h5" -if test $USE_FILTER_FLETCHER32 != "yes"; then - SKIP $option -else - TOOLTEST tfletcher32.ddl $option -fi +TOOLTEST tfletcher32.ddl --enable-error-stack -H -p -d fletcher32 tfilters.h5 # nbit -option="--enable-error-stack -H -p -d nbit tfilters.h5" -if test $USE_FILTER_NBIT != "yes"; then - SKIP $option -else - TOOLTEST tnbit.ddl $option -fi +TOOLTEST tnbit.ddl --enable-error-stack -H -p -d nbit tfilters.h5 # scaleoffset -option="--enable-error-stack -H -p -d scaleoffset tfilters.h5" -if test $USE_FILTER_SCALEOFFSET != "yes"; then - SKIP $option -else - TOOLTEST tscaleoffset.ddl $option -fi +TOOLTEST tscaleoffset.ddl --enable-error-stack -H -p -d scaleoffset tfilters.h5 # all -option="--enable-error-stack -H -p -d all tfilters.h5" -if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes"; then - SKIP $option -else - TOOLTEST tallfilters.ddl $option -fi +TOOLTEST tallfilters.ddl --enable-error-stack -H -p -d all tfilters.h5 # user defined TOOLTEST tuserfilter.ddl --enable-error-stack -H -p -d myfilter tfilters.h5 diff --git a/tools/h5dump/testh5dumppbits.sh.in b/tools/h5dump/testh5dumppbits.sh.in index 991fe7a..a390766 100644 --- a/tools/h5dump/testh5dumppbits.sh.in +++ b/tools/h5dump/testh5dumppbits.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool with packed bits type files +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -40,14 +42,13 @@ H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -77,6 +78,8 @@ test -d $TESTDIR || mkdir $TESTDIR # -------------------------------------------------------------------- LIST_HDF5_TEST_FILES=" $SRC_H5DUMP_TESTFILES/packedbits.h5 +$SRC_H5DUMP_TESTFILES/tarray1.h5 +$SRC_H5DUMP_TESTFILES/tcompound.h5 " LIST_OTHER_TEST_FILES=" @@ -165,18 +168,25 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } - # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". # diff --git a/tools/h5dump/testh5dumpxml.sh.in b/tools/h5dump/testh5dumpxml.sh.in index 4e6081b..374f504 100644 --- a/tools/h5dump/testh5dumpxml.sh.in +++ b/tools/h5dump/testh5dumpxml.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool +srcdir=@srcdir@ + TESTNAME=h5dumpxml EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -27,14 +29,13 @@ DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -195,12 +196,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index a655bf2..bc47244 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -273,7 +273,9 @@ IF (BUILD_TESTING) # -------------------------------------------------------------------- # Determine if filter is available for h5diff # -------------------------------------------------------------------- - SET (USE_FILTER_DEFLATE H5_HAVE_FILTER_DEFLATE) + IF (H5_HAVE_FILTER_DEFLATE) + SET (USE_FILTER_DEFLATE "true") + ENDIF (H5_HAVE_FILTER_DEFLATE) ############################################################################## ############################################################################## @@ -379,7 +381,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5import ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5import ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5import/Makefile.am b/tools/h5import/Makefile.am index 49f4f71..167dbc9 100644 --- a/tools/h5import/Makefile.am +++ b/tools/h5import/Makefile.am @@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG=h5importtest -TEST_SCRIPT=$(srcdir)/h5importtestutil.sh +TEST_SCRIPT=h5importtestutil.sh check_PROGRAMS=$(TEST_PROG) check_SCRIPT=h5importtestutil.sh diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index b2a90ff..16e8901 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/h5importtestutil.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5import$(EXEEXT) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5import ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = h5importtestutil.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5importtest$(EXEEXT) @@ -73,9 +91,10 @@ h5import_SOURCES = h5import.c h5import_OBJECTS = h5import.$(OBJEXT) h5import_LDADD = $(LDADD) h5import_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5import_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5import_LDFLAGS) $(LDFLAGS) -o $@ @@ -83,6 +102,18 @@ h5importtest_SOURCES = h5importtest.c h5importtest_OBJECTS = h5importtest.$(OBJEXT) h5importtest_LDADD = $(LDADD) h5importtest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -93,30 +124,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5import.c h5importtest.c DIST_SOURCES = h5import.c h5importtest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -134,12 +168,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -403,7 +434,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG = h5importtest -TEST_SCRIPT = $(srcdir)/h5importtestutil.sh +TEST_SCRIPT = h5importtestutil.sh check_SCRIPT = h5importtestutil.sh SCRIPT_DEPEND = h5import$(EXEEXT) @@ -424,6 +455,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -453,6 +488,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -462,10 +498,15 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +h5importtestutil.sh: $(top_builddir)/config.status $(srcdir)/h5importtestutil.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -514,10 +555,10 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) +h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) $(EXTRA_h5import_DEPENDENCIES) @rm -f h5import$(EXEEXT) $(AM_V_CCLD)$(h5import_LINK) $(h5import_OBJECTS) $(h5import_LDADD) $(LIBS) -h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) +h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) $(EXTRA_h5importtest_DEPENDENCIES) @rm -f h5importtest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5importtest_OBJECTS) $(h5importtest_LDADD) $(LIBS) @@ -533,26 +574,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -609,6 +647,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -661,10 +713,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -751,7 +808,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -780,7 +837,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -806,7 +863,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -830,7 +887,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -840,7 +897,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -930,7 +987,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -960,7 +1017,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5import/h5importtestutil.sh b/tools/h5import/h5importtestutil.sh.in index 45a360a..ba0743b 100755..100644 --- a/tools/h5import/h5importtestutil.sh +++ b/tools/h5import/h5importtestutil.sh.in @@ -16,6 +16,8 @@ # HDF Utilities Test script # Usage: h5importtestutil.sh [machine-type] +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -24,15 +26,13 @@ EXIT_SUCCESS=0 EXIT_FAILURE=1 CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' # initialize errors variable nerrors=0 -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -128,12 +128,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt index d0bf30f..b44e734 100644 --- a/tools/h5jam/CMakeLists.txt +++ b/tools/h5jam/CMakeLists.txt @@ -535,7 +535,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5jam ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5jam ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index 31190ec..ff8b089 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,14 +68,16 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5jam.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5jam.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5jam$(EXEEXT) h5unjam$(EXEEXT) check_PROGRAMS = tellub$(EXEEXT) h5jamgentest$(EXEEXT) getub$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(TEST_SCRIPT) subdir = tools/h5jam ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -72,9 +90,10 @@ getub_SOURCES = getub.c getub_OBJECTS = getub.$(OBJEXT) getub_LDADD = $(LDADD) getub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5jam_SOURCES = h5jam.c h5jam_OBJECTS = h5jam.$(OBJEXT) h5jam_LDADD = $(LDADD) @@ -97,6 +116,18 @@ tellub_SOURCES = tellub.c tellub_OBJECTS = tellub.$(OBJEXT) tellub_LDADD = $(LDADD) tellub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -107,30 +138,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c DIST_SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -148,12 +182,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -440,6 +471,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -469,6 +504,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -482,8 +518,11 @@ testh5jam.sh: $(top_builddir)/config.status $(srcdir)/testh5jam.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -532,19 +571,19 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) +getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) $(EXTRA_getub_DEPENDENCIES) @rm -f getub$(EXEEXT) $(AM_V_CCLD)$(LINK) $(getub_OBJECTS) $(getub_LDADD) $(LIBS) -h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) +h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) $(EXTRA_h5jam_DEPENDENCIES) @rm -f h5jam$(EXEEXT) $(AM_V_CCLD)$(h5jam_LINK) $(h5jam_OBJECTS) $(h5jam_LDADD) $(LIBS) -h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) +h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) $(EXTRA_h5jamgentest_DEPENDENCIES) @rm -f h5jamgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5jamgentest_OBJECTS) $(h5jamgentest_LDADD) $(LIBS) -h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) +h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) $(EXTRA_h5unjam_DEPENDENCIES) @rm -f h5unjam$(EXEEXT) $(AM_V_CCLD)$(h5unjam_LINK) $(h5unjam_OBJECTS) $(h5unjam_LDADD) $(LIBS) -tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) +tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) $(EXTRA_tellub_DEPENDENCIES) @rm -f tellub$(EXEEXT) $(AM_V_CCLD)$(LINK) $(tellub_OBJECTS) $(tellub_LDADD) $(LIBS) @@ -563,26 +602,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -639,6 +675,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -691,10 +741,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -782,7 +837,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -811,7 +866,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -837,7 +892,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -861,7 +916,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -871,7 +926,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -961,7 +1016,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -991,7 +1046,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5jam/testh5jam.sh.in b/tools/h5jam/testh5jam.sh.in index f359926..b2c6bec 100644 --- a/tools/h5jam/testh5jam.sh.in +++ b/tools/h5jam/testh5jam.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5jam/h5unjam tools +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -36,15 +38,13 @@ CMP='cmp -s' DIFF='diff -c' AWK='awk' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -103,12 +103,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt index 81a6787..e2b3285 100644 --- a/tools/h5ls/CMakeLists.txt +++ b/tools/h5ls/CMakeLists.txt @@ -434,7 +434,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5ls ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5ls ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 1a33335..7aa4329 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,13 +68,15 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5ls.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5ls.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5ls$(EXEEXT) -TESTS = $(check_SCRIPTS) +TESTS = $(TEST_SCRIPT) subdir = tools/h5ls ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -71,12 +89,25 @@ h5ls_SOURCES = h5ls.c h5ls_OBJECTS = h5ls.$(OBJEXT) h5ls_LDADD = $(LDADD) h5ls_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5ls_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5ls_LDFLAGS) $(LDFLAGS) -o $@ +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -87,30 +118,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5ls.c DIST_SOURCES = h5ls.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -128,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -417,6 +448,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -446,6 +481,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -459,8 +495,11 @@ testh5ls.sh: $(top_builddir)/config.status $(srcdir)/testh5ls.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -500,7 +539,7 @@ clean-binPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5ls$(EXEEXT): $(h5ls_OBJECTS) $(h5ls_DEPENDENCIES) +h5ls$(EXEEXT): $(h5ls_OBJECTS) $(h5ls_DEPENDENCIES) $(EXTRA_h5ls_DEPENDENCIES) @rm -f h5ls$(EXEEXT) $(AM_V_CCLD)$(h5ls_LINK) $(h5ls_OBJECTS) $(h5ls_LDADD) $(LIBS) @@ -515,26 +554,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -591,6 +627,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -643,10 +693,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -731,8 +786,8 @@ uninstall-am: uninstall-binPROGRAMS .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-binPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-binPROGRAMS clean-generic clean-libtool cscopelist \ + ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ @@ -761,7 +816,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -787,7 +842,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -811,7 +866,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -821,7 +876,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -911,7 +966,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -941,7 +996,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5ls/testh5ls.sh.in b/tools/h5ls/testh5ls.sh.in index 110c651..0904f96 100644 --- a/tools/h5ls/testh5ls.sh.in +++ b/tools/h5ls/testh5ls.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5ls tool +srcdir=@srcdir@ + TESTNAME=h5ls EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -26,19 +28,20 @@ CMP='cmp -s' DIFF='diff -c' CP='cp' NLINES=20 # Max. lines of output to display if test fails +DIRNAME='dirname' +LS='ls' +AWK='awk' WORDS_BIGENDIAN="@WORDS_BIGENDIAN@" nerrors=0 verbose=yes h5haveexitcode=yes # default is yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi + # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" + # testfiles source dirs for tools SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" @@ -167,12 +170,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index 936559e..3ee1cba 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -899,7 +899,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 0d749d3..389339f 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,15 +68,17 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5repack.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/h5repack.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am noinst_PROGRAMS = testh5repack_detect_szip$(EXEEXT) check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5repack$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5repack ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -78,9 +96,10 @@ am_h5repack_OBJECTS = $(am__objects_1) h5repack_main.$(OBJEXT) h5repack_OBJECTS = $(am_h5repack_OBJECTS) h5repack_LDADD = $(LDADD) h5repack_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5repack_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5repack_LDFLAGS) $(LDFLAGS) -o $@ @@ -95,6 +114,18 @@ testh5repack_detect_szip_OBJECTS = \ testh5repack_detect_szip_LDADD = $(LDADD) testh5repack_detect_szip_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) \ $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -105,32 +136,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ $(testh5repack_detect_szip_SOURCES) DIST_SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ $(testh5repack_detect_szip_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -148,12 +182,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -451,6 +482,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -480,6 +515,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -493,8 +529,11 @@ h5repack.sh: $(top_builddir)/config.status $(srcdir)/h5repack.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -552,13 +591,13 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) +h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) $(EXTRA_h5repack_DEPENDENCIES) @rm -f h5repack$(EXEEXT) $(AM_V_CCLD)$(h5repack_LINK) $(h5repack_OBJECTS) $(h5repack_LDADD) $(LIBS) -h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) +h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) $(EXTRA_h5repacktst_DEPENDENCIES) @rm -f h5repacktst$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5repacktst_OBJECTS) $(h5repacktst_LDADD) $(LIBS) -testh5repack_detect_szip$(EXEEXT): $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_DEPENDENCIES) +testh5repack_detect_szip$(EXEEXT): $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_DEPENDENCIES) $(EXTRA_testh5repack_detect_szip_DEPENDENCIES) @rm -f testh5repack_detect_szip$(EXEEXT) $(AM_V_CCLD)$(LINK) $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_LDADD) $(LIBS) @@ -582,26 +621,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -658,6 +694,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -710,10 +760,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -801,7 +856,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool clean-noinstPROGRAMS ctags distclean \ + clean-libtool clean-noinstPROGRAMS cscopelist ctags distclean \ distclean-compile distclean-generic distclean-libtool \ distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-binPROGRAMS install-data \ @@ -834,7 +889,7 @@ h5repack.sh.chkexe_: h5repacktst.chkexe_ # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -860,7 +915,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -884,7 +939,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -894,7 +949,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -984,7 +1039,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1014,7 +1069,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index e05b03f..2614dd6 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -20,6 +20,8 @@ # Added $FILEN variables for file names # +srcdir=@srcdir@ + USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" @@ -42,6 +44,9 @@ H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary GREP='grep' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' H5DETECTSZIP=testh5repack_detect_szip H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP @@ -50,15 +55,10 @@ H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -# -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" + # testfiles source dirs for tools SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" @@ -137,12 +137,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 957d3c8..cf55d7f 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -1541,7 +1541,7 @@ static void print_dataset_info(hid_t dcpl_id, printf(FORMAT_OBJ,"dset",objname ); else { - char str[255], temp[20]; + char str[255], temp[28]; HDstrcpy(str,"dset "); HDstrcat(str,strfilter); sprintf(temp," (%.3f:1)",ratio); diff --git a/tools/h5repack/h5repack_opttable.c b/tools/h5repack/h5repack_opttable.c index 4ec7fcf..00e4bea 100644 --- a/tools/h5repack/h5repack_opttable.c +++ b/tools/h5repack/h5repack_opttable.c @@ -388,7 +388,7 @@ pack_info_t* options_get_object( const char *path, pack_opttbl_t *table ) { unsigned int i; - const char tbl_path[MAX_NC_NAME]; + const char tbl_path[MAX_NC_NAME+1]; /* +1 for start with "/" case */ for ( i = 0; i < table->nelems; i++) diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt index e8d75e3..3518cfd 100644 --- a/tools/h5stat/CMakeLists.txt +++ b/tools/h5stat/CMakeLists.txt @@ -206,7 +206,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5stat ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5stat ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 403446c..389e460 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,14 +69,16 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5stat.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5stat.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5stat$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5stat ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -74,9 +92,10 @@ h5stat_SOURCES = h5stat.c h5stat_OBJECTS = h5stat.$(OBJEXT) h5stat_LDADD = $(LDADD) h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5stat_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5stat_LDFLAGS) $(LDFLAGS) -o $@ @@ -105,7 +124,25 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } SCRIPTS = $(bin_SCRIPTS) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -116,30 +153,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5stat.c h5stat_gentest.c DIST_SOURCES = h5stat.c h5stat_gentest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -157,12 +197,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -459,6 +496,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -488,6 +529,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -501,8 +543,11 @@ testh5stat.sh: $(top_builddir)/config.status $(srcdir)/testh5stat.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -551,16 +596,19 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES) +h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES) $(EXTRA_h5stat_DEPENDENCIES) @rm -f h5stat$(EXEEXT) $(AM_V_CCLD)$(h5stat_LINK) $(h5stat_OBJECTS) $(h5stat_LDADD) $(LIBS) -h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES) +h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES) $(EXTRA_h5stat_gentest_DEPENDENCIES) @rm -f h5stat_gentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5stat_gentest_OBJECTS) $(h5stat_gentest_LDADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ @@ -588,9 +636,7 @@ uninstall-binSCRIPTS: @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 's,.*/,,;$(transform)'`; \ - test -n "$$list" || exit 0; \ - echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(bindir)" && rm -f $$files + dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -604,26 +650,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -680,6 +723,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -732,10 +789,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -824,7 +886,7 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-binSCRIPTS install-data \ @@ -854,7 +916,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -880,7 +942,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -904,7 +966,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -914,7 +976,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1004,7 +1066,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1034,7 +1096,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5stat/testh5stat.sh.in b/tools/h5stat/testh5stat.sh.in index c594a97..74071d0 100644 --- a/tools/h5stat/testh5stat.sh.in +++ b/tools/h5stat/testh5stat.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -33,15 +35,13 @@ STAT_BIN=`pwd`/$STAT # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -106,12 +106,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 6d48d5f..21420ce 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -40,6 +40,7 @@ H5_SET_LIB_OPTIONS ( HDF5_TOOLS_LIB_NAME_RELEASE HDF5_TOOLS_LIB_NAME_DEBUG ) +#SET_TARGET_PROPERTIES (hdf5_tools PROPERTIES COMPILE_DEFINITIONS H5DIFF_DEBUG) SET_TARGET_PROPERTIES (hdf5_tools PROPERTIES FOLDER libraries/tools) ############################################################################## diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index beeb42f..6a76e1d 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,13 +68,14 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = tools/lib ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -72,10 +89,23 @@ am_libh5tools_la_OBJECTS = h5tools.lo h5tools_dump.lo h5tools_str.lo \ h5diff_dset.lo h5diff_util.lo h5trav.lo h5tools_filters.lo \ h5tools_ref.lo h5tools_type.lo libh5tools_la_OBJECTS = $(am_libh5tools_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am__EXEEXT_1 = +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -86,30 +116,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(libh5tools_la_SOURCES) DIST_SOURCES = $(libh5tools_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -127,12 +160,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -419,6 +449,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -448,6 +482,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -460,13 +495,15 @@ $(am__aclocal_m4_deps): clean-noinstLTLIBRARIES: -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) - @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) + @list='$(noinst_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) $(EXTRA_libh5tools_la_DEPENDENCIES) $(AM_V_CCLD)$(LINK) $(libh5tools_la_OBJECTS) $(libh5tools_la_LIBADD) $(LIBS) clean-checkPROGRAMS: @@ -501,26 +538,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -577,6 +611,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -626,10 +674,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -716,17 +769,18 @@ uninstall-am: .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ - clean-noinstLTLIBRARIES ctags distclean distclean-compile \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags uninstall uninstall-am + clean-noinstLTLIBRARIES cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-libtool \ + distclean-tags distdir dvi dvi-am html html-am info info-am \ + install install-am install-data install-data-am install-dvi \ + install-dvi-am install-exec install-exec-am install-html \ + install-html-am install-info install-info-am install-man \ + install-pdf install-pdf-am install-ps install-ps-am \ + install-strip installcheck installcheck-am installdirs \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ + uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -744,7 +798,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -770,7 +824,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -794,7 +848,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -804,7 +858,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -894,7 +948,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -924,7 +978,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index bcd63f1..f2eb3ab 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -21,23 +21,6 @@ #include "h5diff.h" #include "ph5diff.h" -/* - * Debug printf macros. The prefix allows output filtering by test scripts. - */ -#ifdef H5DIFF_DEBUG -#define h5diffdebug(x) HDfprintf(stderr, "h5diff debug: " x) -#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2) -#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5) -#else -#define h5diffdebug(x) -#define h5diffdebug2(x1, x2) -#define h5diffdebug3(x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) -#endif - /*------------------------------------------------------------------------- * Function: print_objname @@ -369,6 +352,7 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch trav_table_t *table; size_t idx; + h5difftrace("build_match_list start\n"); /* init */ trav_table_init( &table ); @@ -378,6 +362,7 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch * All the objects belong to given groups are the cadidates. * So prepare to compare paths without the group names. */ + /* if obj1 is not root */ if (HDstrcmp (objname1,"/") != 0) path1_offset = HDstrlen(objname1); @@ -390,7 +375,6 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch */ while(curr1 < info1->nused && curr2 < info2->nused) { - path1_lp = (info1->paths[curr1].path) + path1_offset; path2_lp = (info2->paths[curr2].path) + path2_offset; type1_l = info1->paths[curr1].type; @@ -399,7 +383,8 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch /* criteria is string compare */ cmp = HDstrcmp(path1_lp, path2_lp); - if(cmp == 0) { + if(cmp == 0) + { if(!is_exclude_path(path1_lp, type1_l, options)) { infile[0] = 1; @@ -470,29 +455,9 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch } /* end while */ free_exclude_path_list (options); - /*------------------------------------------------------ - * print the list - */ - if(options->m_verbose) - { - parallel_print("\n"); - /* if given objects is group under root */ - if (HDstrcmp (objname1,"/") || HDstrcmp (objname2,"/")) - parallel_print("group1 group2\n"); - else - parallel_print("file1 file2\n"); - parallel_print("---------------------------------------\n"); - for(i = 0; i < table->nobjs; i++) - { - char c1, c2; - c1 = (table->objs[i].flags[0]) ? 'x' : ' '; - c2 = (table->objs[i].flags[1]) ? 'x' : ' '; - parallel_print("%5c %6c %-15s\n", c1, c2, table->objs[i].name); - } /* end for */ - parallel_print ("\n"); - } /* end if */ *table_out = table; + h5difftrace("build_match_list finish\n"); } @@ -653,6 +618,7 @@ hsize_t h5diff(const char *fname1, int l_ret2 = -1; const char * obj1fullname = NULL; const char * obj2fullname = NULL; + int both_objs_grp = 0; /* init to group type */ h5trav_type_t obj1type = H5TRAV_TYPE_GROUP; h5trav_type_t obj2type = H5TRAV_TYPE_GROUP; @@ -675,6 +641,7 @@ hsize_t h5diff(const char *fname1, /* list for common objects */ trav_table_t *match_list = NULL; + h5difftrace("h5diff start\n"); /* init filenames */ HDmemset(filenames, 0, MAX_FILENAME * 2); /* init link info struct */ @@ -723,6 +690,7 @@ hsize_t h5diff(const char *fname1, trav_info_init(fname1, file1_id, &info1_obj); trav_info_init(fname2, file2_id, &info2_obj); + h5difftrace("trav_info_init initialized\n"); /* if any object is specified */ if (objname1) { @@ -751,6 +719,7 @@ hsize_t h5diff(const char *fname1, /*---------------------------------------------------------- * check if obj1 is root, group, single object or symlink */ + h5difftrace("h5diff check if obj1 is root, group, single object or symlink\n"); if(!HDstrcmp((char *)obj1fullname, "/")) { obj1type = H5TRAV_TYPE_GROUP; @@ -778,6 +747,7 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo1.type == H5L_TYPE_HARD) { + int idx = 0; /* optional data pass */ info1_obj->opts = (diff_opt_t*)options; @@ -789,6 +759,9 @@ hsize_t h5diff(const char *fname1, } obj1type = oinfo1.type; trav_info_add(info1_obj, obj1fullname, obj1type); + idx = info1_obj->nused - 1; + info1_obj->paths[idx].objno = oinfo1.addr; + info1_obj->paths[idx].fileno = oinfo1.fileno; } else if (src_linfo1.type == H5L_TYPE_SOFT) { @@ -805,6 +778,7 @@ hsize_t h5diff(const char *fname1, /*---------------------------------------------------------- * check if obj2 is root, group, single object or symlink */ + h5difftrace("h5diff check if obj2 is root, group, single object or symlink\n"); if(!HDstrcmp(obj2fullname, "/")) { obj2type = H5TRAV_TYPE_GROUP; @@ -832,6 +806,7 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo2.type == H5L_TYPE_HARD) { + int idx = 0; /* optional data pass */ info2_obj->opts = (diff_opt_t*)options; @@ -843,6 +818,9 @@ hsize_t h5diff(const char *fname1, } obj2type = oinfo2.type; trav_info_add(info2_obj, obj2fullname, obj2type); + idx = info2_obj->nused - 1; + info2_obj->paths[idx].objno = oinfo2.addr; + info2_obj->paths[idx].fileno = oinfo2.fileno; } else if (src_linfo2.type == H5L_TYPE_SOFT) { @@ -859,11 +837,14 @@ hsize_t h5diff(const char *fname1, /* if no object specified */ else { + h5difftrace("h5diff no object specified\n"); /* set root group */ obj1fullname = (char*)HDcalloc(2, sizeof(char)); HDstrcat((char *)obj1fullname, "/"); + obj1type = H5TRAV_TYPE_GROUP; obj2fullname = (char*)HDcalloc(2, sizeof(char)); HDstrcat((char *)obj2fullname, "/"); + obj2type = H5TRAV_TYPE_GROUP; } @@ -883,9 +864,11 @@ hsize_t h5diff(const char *fname1, /*------------------------------- * check symbolic link (object1) */ + h5difftrace("h5diff check symbolic link (object1)\n"); /* dangling link */ if (l_ret1 == 0) { + h5difftrace("h5diff ... dangling link\n"); if (options->no_dangle_links) { /* treat dangling link is error */ @@ -913,15 +896,27 @@ hsize_t h5diff(const char *fname1, goto out; } else if(l_ret1 != 2) /* symbolic link */ + { obj1type = trg_linfo1.trg_type; + h5difftrace("h5diff ... ... trg_linfo1.trg_type == H5L_TYPE_HARD\n"); + if (info1_lp != NULL) { + int idx = info1_lp->nused - 1; + h5difftrace("h5diff ... ... ... info1_obj not null\n"); + info1_lp->paths[idx].type = trg_linfo1.trg_type; + info1_lp->paths[idx].objno = trg_linfo1.objno; + info1_lp->paths[idx].fileno = trg_linfo1.fileno; + } + h5difftrace("h5diff check symbolic link (object1) finished\n"); + } /*------------------------------- * check symbolic link (object2) */ - + h5difftrace("h5diff check symbolic link (object2)\n"); /* dangling link */ if (l_ret2 == 0) { + h5difftrace("h5diff ... dangling link\n"); if (options->no_dangle_links) { /* treat dangling link is error */ @@ -949,11 +944,21 @@ hsize_t h5diff(const char *fname1, goto out; } else if(l_ret2 != 2) /* symbolic link */ + { obj2type = trg_linfo2.trg_type; + if (info2_lp != NULL) { + int idx = info2_lp->nused - 1; + h5difftrace("h5diff ... ... ... info2_obj not null\n"); + info2_lp->paths[idx].type = trg_linfo2.trg_type; + info2_lp->paths[idx].objno = trg_linfo2.objno; + info2_lp->paths[idx].fileno = trg_linfo2.fileno; + } + h5difftrace("h5diff check symbolic link (object1) finished\n"); + } } /* end of if follow symlinks */ /* - * If verbose options is not used, don't need to traverse thorugh the list + * If verbose options is not used, don't need to traverse through the list * of objects in the group to display objects information, * So use h5tools_is_obj_same() to improve performance by skipping * comparing details of same objects. @@ -961,26 +966,26 @@ hsize_t h5diff(const char *fname1, if(!(options->m_verbose || options->m_report)) { + h5difftrace("h5diff NOT (options->m_verbose || options->m_report)\n"); /* if no danglink links */ if ( l_ret1 > 0 && l_ret2 > 0 ) - if (h5tools_is_obj_same(file1_id,obj1fullname,file2_id,obj2fullname)!=0) + if (h5tools_is_obj_same(file1_id, obj1fullname, file2_id, obj2fullname)!=0) goto out; } - - /* if both obj1 and obj2 are group */ - if (obj1type == H5TRAV_TYPE_GROUP && obj2type == H5TRAV_TYPE_GROUP) + both_objs_grp = (obj1type == H5TRAV_TYPE_GROUP && obj2type == H5TRAV_TYPE_GROUP); + if (both_objs_grp) { - - /* - * traverse group1 + h5difftrace("h5diff both_objs_grp TRUE\n"); + /* + * traverse group1 */ trav_info_init(fname1, file1_id, &info1_grp); /* optional data pass */ info1_grp->opts = (diff_opt_t*)options; - if(h5trav_visit(file1_id,obj1fullname,TRUE,TRUE, - trav_grp_objs,trav_grp_symlinks, info1_grp) < 0) + if(h5trav_visit(file1_id, obj1fullname, TRUE, TRUE, + trav_grp_objs, trav_grp_symlinks, info1_grp) < 0) { parallel_print("Error: Could not get file contents\n"); options->err_stat = 1; @@ -988,59 +993,71 @@ hsize_t h5diff(const char *fname1, } info1_lp = info1_grp; - /* - * traverse group2 + /* + * traverse group2 */ trav_info_init(fname2, file2_id, &info2_grp); /* optional data pass */ info2_grp->opts = (diff_opt_t*)options; - if(h5trav_visit(file2_id,obj2fullname,TRUE,TRUE, - trav_grp_objs,trav_grp_symlinks, info2_grp) < 0) + if(h5trav_visit(file2_id, obj2fullname, TRUE, TRUE, + trav_grp_objs, trav_grp_symlinks, info2_grp) < 0) { parallel_print("Error: Could not get file contents\n"); options->err_stat = 1; goto out; } /* end if */ info2_lp = info2_grp; - + } #ifdef H5_HAVE_PARALLEL - if(g_Parallel) + if(g_Parallel) + { + if((HDstrlen(fname1) > MAX_FILENAME) || (HDstrlen(fname2) > MAX_FILENAME)) { - if((HDstrlen(fname1) > MAX_FILENAME) || - (HDstrlen(fname2) > MAX_FILENAME)) - { - HDfprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); - MPI_Abort(MPI_COMM_WORLD, 0); - } /* end if */ + HDfprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); + MPI_Abort(MPI_COMM_WORLD, 0); + } /* end if */ - HDstrcpy(filenames[0], fname1); - HDstrcpy(filenames[1], fname2); + HDstrcpy(filenames[0], fname1); + HDstrcpy(filenames[1], fname2); - /* Alert the worker tasks that there's going to be work. */ - for(i = 1; i < g_nTasks; i++) - MPI_Send(filenames, (MAX_FILENAME * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); - } /* end if */ -#endif - build_match_list (obj1fullname, info1_lp, obj2fullname, info2_lp, - &match_list, options); - nfound = diff_match(file1_id, obj1fullname, info1_lp, - file2_id, obj2fullname, info2_lp, - match_list, options); - } - else - { -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Only single object diff, parallel workers won't be needed */ - phdiff_dismiss_workers(); + /* Alert the worker tasks that there's going to be work. */ + for(i = 1; i < g_nTasks; i++) + MPI_Send(filenames, (MAX_FILENAME * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); + } /* end if */ #endif - nfound = diff_compare(file1_id, fname1, obj1fullname, info1_lp, - file2_id, fname2, obj2fullname, info2_lp, - options); + /* process the objects */ + build_match_list (obj1fullname, info1_lp, obj2fullname, info2_lp, + &match_list, options); + if (both_objs_grp) + { + /*------------------------------------------------------ + * print the list + */ + if(options->m_verbose) + { + parallel_print("\n"); + /* if given objects is group under root */ + if (HDstrcmp (obj1fullname,"/") || HDstrcmp (obj2fullname,"/")) + parallel_print("group1 group2\n"); + else + parallel_print("file1 file2\n"); + parallel_print("---------------------------------------\n"); + for(i = 0; i < match_list->nobjs; i++) + { + char c1, c2; + c1 = (match_list->objs[i].flags[0]) ? 'x' : ' '; + c2 = (match_list->objs[i].flags[1]) ? 'x' : ' '; + parallel_print("%5c %6c %-15s\n", c1, c2, match_list->objs[i].name); + } /* end for */ + parallel_print ("\n"); + } /* end if */ } + nfound = diff_match(file1_id, obj1fullname, info1_lp, + file2_id, obj2fullname, info2_lp, + match_list, options); out: #ifdef H5_HAVE_PARALLEL @@ -1077,6 +1094,7 @@ out: H5Fclose(file1_id); H5Fclose(file2_id); } H5E_END_TRY; + h5difftrace("h5diff finish\n"); return nfound; } @@ -1125,6 +1143,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, size_t idx2 = 0; + h5difftrace("diff_match start\n"); /* * if not root, prepare object name to be pre-appended to group path to * make full path @@ -1142,7 +1161,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, *------------------------------------------------------------------------- */ - /* not valid compare nused when --exclude-path option is used */ + /* not valid compare used when --exclude-path option is used */ if (!options->exclude_path) { /* number of different objects */ @@ -1222,7 +1241,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, { int workerFound = 0; - h5diffdebug("beginning of big else block\n"); + h5difftrace("Beginning of big else block\n"); /* We're in parallel mode */ /* Since the data type of diff value is hsize_t which can * be arbitary large such that there is no MPI type that @@ -1247,7 +1266,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, args.argdata.type[1] = info2->paths[idx2].type; args.argdata.is_same_trgobj = table->objs[i].is_same_trgobj; - h5diffdebug2("busyTasks=%d\n", busyTasks); /* if there are any outstanding print requests, let's handle one. */ if(busyTasks > 0) { @@ -1319,7 +1337,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, } /* end if */ } /* end for */ - h5diffdebug2("workerfound is %d \n", workerFound); if(!workerFound) { /* if they were all busy, we've got to wait for one free up @@ -1395,7 +1412,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, HDfree (obj2_fullpath); } /* end if */ } /* end for */ - h5diffdebug("done with for loop\n"); + h5difftrace("done with for loop\n"); #ifdef H5_HAVE_PARALLEL if(g_Parallel) @@ -1411,14 +1428,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, options->not_cmp = options->not_cmp | nFoundbyWorker.not_cmp; busyTasks--; } /* end if */ - else if(Status.MPI_TAG == MPI_TAG_TOK_RETURN) - { - MPI_Recv(&nFoundbyWorker, sizeof(nFoundbyWorker), MPI_BYTE, Status.MPI_SOURCE, MPI_TAG_DONE, MPI_COMM_WORLD, &Status); - nfound += nFoundbyWorker.nfound; - options->not_cmp = options->not_cmp | nFoundbyWorker.not_cmp; - busyTasks--; - havePrintToken = 1; - } /* end else-if */ else if(Status.MPI_TAG == MPI_TAG_TOK_REQUEST) { MPI_Recv(NULL, 0, MPI_BYTE, Status.MPI_SOURCE, MPI_TAG_TOK_REQUEST, MPI_COMM_WORLD, &Status); @@ -1490,7 +1499,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, /* Print any final data waiting in our queue */ print_incoming_data(); } /* end if */ - h5diffdebug("done with if block\n"); + h5difftrace("done with if block\n"); HDfree(workerTasks); } @@ -1499,130 +1508,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, /* free table */ if (table) trav_table_free(table); - - return nfound; -} - - -/*------------------------------------------------------------------------- - * Function: diff_compare - * - * Purpose: get objects from list, and check for the same type - * - * Return: Number of differences found - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * Date: May 9, 2003 - * - * Programmer: Jonathan Kim - * - add following links feature (Feb 11,2010) - *------------------------------------------------------------------------- - */ - -hsize_t diff_compare(hid_t file1_id, - const char *file1_name, - const char *obj1_name, - trav_info_t *info1, - hid_t file2_id, - const char *file2_name, - const char *obj2_name, - trav_info_t *info2, - diff_opt_t *options) -{ - int f1 = 0; - int f2 = 0; - hsize_t nfound = 0; - ssize_t i,j; - int l_ret; - int is_dangle_link1 = 0; - int is_dangle_link2 = 0; - const char *obj1name = obj1_name; - const char *obj2name = obj2_name; - diff_args_t argdata; - - /* local variables for diff() */ - h5trav_type_t obj1type, obj2type; - - /* to get link info */ - h5tool_link_info_t linkinfo1; - h5tool_link_info_t linkinfo2; - - /* init link info struct */ - HDmemset(&linkinfo1, 0, sizeof(h5tool_link_info_t)); - HDmemset(&linkinfo2, 0, sizeof(h5tool_link_info_t)); - - i = h5trav_getindex (info1, obj1name); - j = h5trav_getindex (info2, obj2name); - - if (i == -1) - { - parallel_print ("Object <%s> could not be found in <%s>\n", obj1name, - file1_name); - f1 = 1; - } - if (j == -1) - { - parallel_print ("Object <%s> could not be found in <%s>\n", obj2name, - file2_name); - f2 = 1; - } - if (f1 || f2) - { - options->err_stat = 1; - return 0; - } - /* use the name with "/" first, as obtained by iterator function */ - obj1name = info1->paths[i].path; - obj2name = info2->paths[j].path; - - obj1type = info1->paths[i].type; - obj2type = info2->paths[j].type; - - /* Set argdata to pass other args into diff() */ - argdata.type[0] = obj1type; - argdata.type[1] = obj2type; - argdata.is_same_trgobj = 0; - - nfound = diff(file1_id, obj1name, - file2_id, obj2name, - options, &argdata); - -out: - /*------------------------------- - * handle dangling link(s) */ - /* both obj1 and obj2 are dangling links */ - if(is_dangle_link1 && is_dangle_link2) - { - if(print_objname(options, nfound)) - { - do_print_objname("dangling link", obj1name, obj2name, options); - print_found(nfound); - } - } - /* obj1 is dangling link */ - else if (is_dangle_link1) - { - if(options->m_verbose) - parallel_print("obj1 <%s> is a dangling link.\n", obj1name); - nfound++; - if(print_objname(options, nfound)) - print_found(nfound); - } - /* obj2 is dangling link */ - else if (is_dangle_link2) - { - if(options->m_verbose) - parallel_print("obj2 <%s> is a dangling link.\n", obj2name); - nfound++; - if(print_objname(options, nfound)) - print_found(nfound); - } - - /* free link info buffer */ - if (linkinfo1.trg_path) - HDfree((char *)linkinfo1.trg_path); - if (linkinfo2.trg_path) - HDfree((char *)linkinfo2.trg_path); + h5difftrace("diff_match finish\n"); return nfound; } @@ -1672,11 +1558,12 @@ hsize_t diff(hid_t file1_id, hsize_t nfound = 0; h5trav_type_t object_type; - /* to get link info */ h5tool_link_info_t linkinfo1; h5tool_link_info_t linkinfo2; + h5difftrace("diff start\n"); + /*init link info struct */ HDmemset(&linkinfo1,0,sizeof(h5tool_link_info_t)); HDmemset(&linkinfo2,0,sizeof(h5tool_link_info_t)); @@ -1776,6 +1663,7 @@ hsize_t diff(hid_t file1_id, */ if (argdata->is_same_trgobj) { + h5difftrace("argdata->is_same_trgobj\n"); is_hard_link = (object_type == H5TRAV_TYPE_DATASET || object_type == H5TRAV_TYPE_NAMED_DATATYPE || object_type == H5TRAV_TYPE_GROUP); @@ -2061,6 +1949,7 @@ out2: H5Tclose(grp2_id); /* enable error reporting */ } H5E_END_TRY; + h5difftrace("diff finish\n"); return nfound; } diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h index 6985b68..2530805 100644 --- a/tools/lib/h5diff.h +++ b/tools/lib/h5diff.h @@ -19,6 +19,23 @@ #include "hdf5.h" #include "h5trav.h" +/* + * Debug printf macros. The prefix allows output filtering by test scripts. + */ +#ifdef H5DIFF_DEBUG +#define h5difftrace(x) HDfprintf(stderr, "h5diff debug: " x) +#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2) +#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3) +#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4) +#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5) +#else +#define h5difftrace(x) +#define h5diffdebug2(x1, x2) +#define h5diffdebug3(x1, x2, x3) +#define h5diffdebug4(x1, x2, x3, x4) +#define h5diffdebug5(x1, x2, x3, x4, x5) +#endif + #define MAX_FILENAME 1024 /*------------------------------------------------------------------------- @@ -118,15 +135,6 @@ hsize_t diff_datasetid( hid_t dset1_id, const char *obj2_name, diff_opt_t *options); -hsize_t diff_compare( hid_t file1_id, - const char *file1_name, - const char *obj1_name, - trav_info_t *info1, - hid_t file2_id, - const char *file2_name, - const char *obj2_name, - trav_info_t *info2, - diff_opt_t *options ); hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1, hid_t file2_id, const char *grp2, trav_info_t *info2, @@ -172,6 +180,7 @@ hsize_t diff_attr(hid_t loc1_id, *------------------------------------------------------------------------- */ +/* in h5diff_util.c */ void print_found(hsize_t nfound); void print_type(hid_t type); const char* diff_basename(const char *name); @@ -179,6 +188,10 @@ const char* get_type(h5trav_type_t type); const char* get_class(H5T_class_t tclass); const char* get_sign(H5T_sign_t sign); void print_dimensions (int rank, hsize_t *dims); +herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, + hid_t *m_tid1, hid_t *m_tid2, + size_t *m_size1, size_t *m_size2); +/* in h5diff.c */ int print_objname(diff_opt_t *options, hsize_t nfound); void do_print_objname (const char *OBJ, const char *path1, const char *path2, diff_opt_t * opts); void do_print_attrname (const char *attr, const char *path1, const char *path2); diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 604a825..1e7f88b 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -230,6 +230,7 @@ hsize_t diff_array( void *_mem1, mcomp_t members; H5T_class_t type_class; + h5difftrace("diff_array start\n"); /* get the size. */ size = H5Tget_size( m_type ); type_class = H5Tget_class(m_type); @@ -344,6 +345,7 @@ hsize_t diff_array( void *_mem1, } /* i */ close_member_types(&members); } /* switch */ + h5difftrace("diff_array finish\n"); return nfound; } @@ -423,6 +425,7 @@ hsize_t diff_datum(void *_mem1, double per; int both_zero; + h5difftrace("diff_datum start\n"); type_size = H5Tget_size( m_type ); type_class = H5Tget_class(m_type); @@ -2537,6 +2540,7 @@ hsize_t diff_datum(void *_mem1, break; /* H5T_FLOAT class */ } /* switch */ + h5difftrace("diff_datum finish\n"); return nfound; } @@ -2822,6 +2826,7 @@ hsize_t character_compare(unsigned char *mem1, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + h5difftrace("character_compare start\n"); if (temp1_uchar != temp2_uchar) { @@ -2836,6 +2841,7 @@ hsize_t character_compare(unsigned char *mem1, } nfound++; } + h5difftrace("character_compare finish\n"); return nfound; } @@ -2872,6 +2878,7 @@ hsize_t character_compare_opt(unsigned char *mem1, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + h5difftrace("character_compare_opt start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -2927,6 +2934,7 @@ hsize_t character_compare_opt(unsigned char *mem1, } nfound++; } + h5difftrace("character_compare_opt finish\n"); return nfound; @@ -2965,6 +2973,7 @@ hsize_t diff_float(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_float start\n"); /*------------------------------------------------------------------------- * -d and !-p @@ -3202,6 +3211,7 @@ hsize_t diff_float(unsigned char *mem1, } + h5difftrace("diff_float finish\n"); return nfound; } @@ -3239,6 +3249,7 @@ hsize_t diff_double(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_double start\n"); /*------------------------------------------------------------------------- * -d and !-p *------------------------------------------------------------------------- @@ -3479,6 +3490,7 @@ hsize_t diff_double(unsigned char *mem1, } + h5difftrace("diff_double finish\n"); return nfound; } @@ -3521,6 +3533,7 @@ hsize_t diff_ldouble(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_ldouble start\n"); /*------------------------------------------------------------------------- * -d and !-p @@ -3762,6 +3775,7 @@ hsize_t diff_ldouble(unsigned char *mem1, } + h5difftrace("diff_ldouble finish\n"); return nfound; } @@ -3802,6 +3816,7 @@ hsize_t diff_schar(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_schar start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -3943,6 +3958,7 @@ hsize_t diff_schar(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_schar finish\n"); return nfound; } @@ -3979,6 +3995,7 @@ hsize_t diff_uchar(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_uchar start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -4121,6 +4138,7 @@ hsize_t diff_uchar(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_uchar finish\n"); return nfound; } @@ -4155,6 +4173,7 @@ hsize_t diff_short(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_short start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4298,6 +4317,7 @@ hsize_t diff_short(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_short finish\n"); return nfound; } @@ -4333,6 +4353,7 @@ hsize_t diff_ushort(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ushort start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4476,6 +4497,7 @@ hsize_t diff_ushort(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ushort finish\n"); return nfound; } @@ -4512,6 +4534,7 @@ hsize_t diff_int(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_int start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4655,6 +4678,7 @@ hsize_t diff_int(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_int finish\n"); return nfound; } @@ -4691,6 +4715,7 @@ hsize_t diff_uint(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_uint start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4832,6 +4857,7 @@ hsize_t diff_uint(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_uint finish\n"); return nfound; } @@ -4868,6 +4894,7 @@ hsize_t diff_long(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_long start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5014,6 +5041,7 @@ hsize_t diff_long(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_long finish\n"); return nfound; } @@ -5051,6 +5079,7 @@ hsize_t diff_ulong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ulong start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -5198,6 +5227,7 @@ hsize_t diff_ulong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ulong finish\n"); return nfound; } @@ -5234,6 +5264,7 @@ hsize_t diff_llong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_llong start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5371,6 +5402,7 @@ hsize_t diff_llong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_llong finish\n"); return nfound; } @@ -5408,6 +5440,7 @@ hsize_t diff_ullong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ullong start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5549,6 +5582,7 @@ hsize_t diff_ullong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ullong finish\n"); return nfound; } @@ -5575,6 +5609,7 @@ int ull2float(unsigned long long ull_value, float *f_value) size_t src_size; size_t dst_size; + h5difftrace("ull2float start\n"); if((dxpl_id = H5Pcreate(H5P_DATASET_XFER))<0) return -1; @@ -5592,6 +5627,7 @@ int ull2float(unsigned long long ull_value, float *f_value) if(buf) HDfree(buf); + h5difftrace("ull2float finish\n"); return 0; @@ -5601,6 +5637,7 @@ error: } H5E_END_TRY; if(buf) HDfree(buf); + h5difftrace("ull2float errored\n"); return -1; } @@ -5620,6 +5657,7 @@ error: static hbool_t equal_double(double value, double expected, diff_opt_t *options) { + h5difftrace("equal_double start\n"); if ( options->do_nans ) { @@ -5656,6 +5694,7 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) if ( ABS( (value-expected) ) < DBL_EPSILON) return TRUE; } + h5difftrace("equal_double finish\n"); return FALSE; } @@ -5673,6 +5712,7 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) static hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *options) { + h5difftrace("equal_ldouble start\n"); if ( options->do_nans ) { @@ -5709,6 +5749,7 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio if ( ABS( (value-expected) ) < DBL_EPSILON) return TRUE; } + h5difftrace("equal_ldouble finish\n"); return FALSE; } @@ -5730,6 +5771,7 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio static hbool_t equal_float(float value, float expected, diff_opt_t *options) { + h5difftrace("equal_float start\n"); if ( options->do_nans ) { @@ -5766,6 +5808,7 @@ hbool_t equal_float(float value, float expected, diff_opt_t *options) if ( ABS( (value-expected) ) < FLT_EPSILON) return TRUE; } + h5difftrace("equal_float finish\n"); return FALSE; @@ -5795,6 +5838,7 @@ my_isnan(dtype_t type, void *val) int retval = 0; char s[256]; + h5difftrace("my_isnan start\n"); if (FLT_FLOAT==type) { float x; @@ -5893,6 +5937,7 @@ my_isnan(dtype_t type, void *val) } } #endif /*H5_VMS*/ + h5difftrace("my_isnan finish\n"); return retval; } diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 85cd01f..144159a 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -405,6 +405,14 @@ hsize_t diff_attr(hid_t loc1_id, continue; } + /*----------------------------------------------------------------- + * "upgrade" the smaller memory size + *------------------------------------------------------------------ + */ + if (FAIL == match_up_memsize (ftype1_id, ftype2_id, + &mtype1_id, &mtype2_id, + &msize1, &msize2)) + goto error; /*--------------------------------------------------------------------- * read diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index c1ed429..f9c7d1c 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -218,6 +218,7 @@ hsize_t diff_datasetid( hid_t did1, int i; unsigned int vl_data = 0; /*contains VL datatypes */ + h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ if ( (sid1 = H5Dget_space(did1)) < 0 ) goto error; @@ -263,6 +264,7 @@ hsize_t diff_datasetid( hid_t did1, * check for empty datasets *------------------------------------------------------------------------- */ + h5difftrace("check for empty datasets\n"); storage_size1=H5Dget_storage_size(did1); storage_size2=H5Dget_storage_size(did2); @@ -300,6 +302,7 @@ hsize_t diff_datasetid( hid_t did1, * memory type and sizes *------------------------------------------------------------------------- */ + h5difftrace("check for memory type and sizes\n"); if ((m_tid1=h5tools_get_native_type(f_tid1)) < 0) goto error; @@ -315,10 +318,12 @@ hsize_t diff_datasetid( hid_t did1, */ if (can_compare) { + h5difftrace("can_compare for sign\n"); sign1=H5Tget_sign(m_tid1); sign2=H5Tget_sign(m_tid2); if ( sign1 != sign2 ) { + h5difftrace("sign1 != sign2\n"); if ((options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1)); @@ -341,6 +346,7 @@ hsize_t diff_datasetid( hid_t did1, */ if(can_compare) /* it is possible to compare */ { + h5difftrace("can_compare attempt\n"); /*----------------------------------------------------------------- * get number of elements @@ -360,26 +366,12 @@ hsize_t diff_datasetid( hid_t did1, * "upgrade" the smaller memory size *------------------------------------------------------------------ */ + h5difftrace("upgrade the smaller memory size?\n"); - if(m_size1 != m_size2) { - if(m_size1 < m_size2) { - H5Tclose(m_tid1); - - if((m_tid1 = h5tools_get_native_type(f_tid2)) < 0) - goto error; - - m_size1 = H5Tget_size(m_tid1); - } /* end if */ - else { - H5Tclose(m_tid2); - - if((m_tid2 = h5tools_get_native_type(f_tid1)) < 0) - goto error; - - m_size2 = H5Tget_size(m_tid2); - } /* end else */ - } /* end if */ - HDassert(m_size1 == m_size2); + if (FAIL == match_up_memsize (f_tid1, f_tid2, + &m_tid1, &m_tid2, + &m_size1, &m_size2)) + goto error; /* print names */ if(obj1_name) @@ -399,6 +391,7 @@ hsize_t diff_datasetid( hid_t did1, } /* end if */ if(buf1 != NULL && buf2 != NULL) { + h5difftrace("buf1 != NULL && buf2 != NULL\n"); if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0) goto error; if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0) @@ -519,6 +512,7 @@ hsize_t diff_datasetid( hid_t did1, * the if condition refers to cases when the dataset is a referenced object *------------------------------------------------------------------------- */ + h5difftrace("compare attributes?\n"); if(obj1_name) nfound += diff_attr(did1,did2,obj1_name,obj2_name,options); @@ -526,6 +520,7 @@ hsize_t diff_datasetid( hid_t did1, * close *------------------------------------------------------------------------- */ + h5difftrace("compare attributes?\n"); /* free */ if(buf1 != NULL) { @@ -553,6 +548,7 @@ hsize_t diff_datasetid( hid_t did1, H5Tclose(m_tid1); H5Tclose(m_tid2); } H5E_END_TRY; + h5difftrace("diff_datasetid finish\n"); return nfound; @@ -603,6 +599,7 @@ error: H5Tclose(m_tid2); /* enable error reporting */ } H5E_END_TRY; + h5difftrace("diff_datasetid errored\n"); return nfound; } diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index 0d476b6..aefd641 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -311,4 +311,46 @@ void print_found(hsize_t nfound) } +/*----------------------------------------------------------------- + * Function: match_up_memsize + * + * Purpose: match smaller memory size up to bigger memory size + *------------------------------------------------------------------ + */ +herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, + hid_t *m_tid1, hid_t *m_tid2, + size_t *m_size1, size_t *m_size2) +{ + herr_t ret = SUCCEED; + + if( (*m_size1) != (*m_size2) ) + { + if( (*m_size1) < (*m_size2) ) + { + H5Tclose( *m_tid1 ); + + if(( (*m_tid1) = h5tools_get_native_type(f_tid2_id)) < 0) + { + ret = FAIL; + goto out; + } + + *m_size1 = H5Tget_size( *m_tid1 ); + } /* end if */ + else { + H5Tclose(*m_tid2); + if(( (*m_tid2) = h5tools_get_native_type(f_tid1_id)) < 0) + { + ret = FAIL; + goto out; + } + + *m_size2 = H5Tget_size(*m_tid2); + } /* end else */ + } /* end if */ + HDassert( (*m_size1) == (*m_size2) ); + +out: + return ret; +} diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 495aca1..7b6098d 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -1072,256 +1072,6 @@ init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) * Failure: FAIL *------------------------------------------------------------------------- */ - -#ifdef DEBUG_H5DUMP_BIN -int -render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem) -{ - HERR_INIT(int, SUCCEED) - unsigned char *mem = (unsigned char*)_mem; - size_t size; /* datum size */ - float tempfloat; - double tempdouble; - unsigned long long tempullong; - long long templlong; - unsigned long tempulong; - long templong; - unsigned int tempuint; - int tempint; - unsigned short tempushort; - short tempshort; - unsigned char tempuchar; - char tempschar; -#if H5_SIZEOF_LONG_DOUBLE !=0 - long double templdouble; -#endif - static char fmt_llong[8], fmt_ullong[8]; - if (!fmt_llong[0]) { - HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH); - HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH); - } - - if((size = H5Tget_size(tid)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); - - if (H5Tequal(tid, H5T_NATIVE_FLOAT)) { - HDmemcpy(&tempfloat, mem, sizeof(float)); - HDfprintf(stream, "%g ", tempfloat); - } - else if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) { - HDmemcpy(&tempdouble, mem, sizeof(double)); - HDfprintf(stream, "%g ", tempdouble); - } -#if H5_SIZEOF_LONG_DOUBLE !=0 - else if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) { - HDmemcpy(&templdouble, mem, sizeof(long double)); - HDfprintf(stream, "%Lf ", templdouble); - } -#endif - else if (H5T_STRING == H5Tget_class(tid)) { - unsigned int i; - H5T_str_t pad; - char *s; - - pad = H5Tget_strpad(tid); - - if (H5Tis_variable_str(tid)) { - s = *(char**) mem; - if (s != NULL) - size = HDstrlen(s); - } - else { - s = (char *) mem; - if((size = H5Tget_size(tid)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); - } - for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) { - HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char)); - HDfprintf(stream, "%d", tempuchar); - } /* i */ - } - else if (H5Tequal(tid, H5T_NATIVE_INT)) { - HDmemcpy(&tempint, mem, sizeof(int)); - HDfprintf(stream, "%d ", tempint); - } - else if (H5Tequal(tid, H5T_NATIVE_UINT)) { - HDmemcpy(&tempuint, mem, sizeof(unsigned int)); - HDfprintf(stream, "%u ", tempuint); - } - else if (H5Tequal(tid, H5T_NATIVE_SCHAR)) { - HDmemcpy(&tempschar, mem, sizeof(char)); - HDfprintf(stream, "%d ", tempschar); - } - else if (H5Tequal(tid, H5T_NATIVE_UCHAR)) { - HDmemcpy(&tempuchar, mem, sizeof(unsigned char)); - HDfprintf(stream, "%u ", tempuchar); - } - else if (H5Tequal(tid, H5T_NATIVE_SHORT)) { - HDmemcpy(&tempshort, mem, sizeof(short)); - HDfprintf(stream, "%d ", tempshort); - } - else if (H5Tequal(tid, H5T_NATIVE_USHORT)) { - HDmemcpy(&tempushort, mem, sizeof(unsigned short)); - HDfprintf(stream, "%u ", tempushort); - } - else if (H5Tequal(tid, H5T_NATIVE_LONG)) { - HDmemcpy(&templong, mem, sizeof(long)); - HDfprintf(stream, "%ld ", templong); - } - else if (H5Tequal(tid, H5T_NATIVE_ULONG)) { - HDmemcpy(&tempulong, mem, sizeof(unsigned long)); - HDfprintf(stream, "%lu ", tempulong); - } - else if (H5Tequal(tid, H5T_NATIVE_LLONG)) { - HDmemcpy(&templlong, mem, sizeof(long long)); - HDfprintf(stream, fmt_llong, templlong); - } - else if (H5Tequal(tid, H5T_NATIVE_ULLONG)) { - HDmemcpy(&tempullong, mem, sizeof(unsigned long long)); - HDfprintf(stream, fmt_ullong, tempullong); - } - else if (H5Tequal(tid, H5T_NATIVE_HSSIZE)) { - if (sizeof(hssize_t) == sizeof(int)) { - HDmemcpy(&tempint, mem, sizeof(int)); - HDfprintf(stream, "%d ", tempint); - } - else if (sizeof(hssize_t) == sizeof(long)) { - HDmemcpy(&templong, mem, sizeof(long)); - HDfprintf(stream, "%ld ", templong); - } - else { - HDmemcpy(&templlong, mem, sizeof(long long)); - HDfprintf(stream, fmt_llong, templlong); - } - } - else if (H5Tequal(tid, H5T_NATIVE_HSIZE)) { - if (sizeof(hsize_t) == sizeof(int)) { - HDmemcpy(&tempuint, mem, sizeof(unsigned int)); - HDfprintf(stream, "%u ", tempuint); - } - else if (sizeof(hsize_t) == sizeof(long)) { - HDmemcpy(&tempulong, mem, sizeof(unsigned long)); - HDfprintf(stream, "%lu ", tempulong); - } - else { - HDmemcpy(&tempullong, mem, sizeof(unsigned long long)); - HDfprintf(stream, fmt_ullong, tempullong); - } - } - else if (H5Tget_class(tid) == H5T_COMPOUND) { - unsigned j; - hid_t memb; - unsigned nmembs; - size_t offset; - - nmembs = H5Tget_nmembers(tid); - - for (j = 0; j < nmembs; j++) { - offset = H5Tget_member_offset(tid, j); - memb = H5Tget_member_type(tid, j); - - if (render_bin_output(stream, container, memb, mem + offset) < 0) - return FAIL; - - H5Tclose(memb); - } - } - else if (H5Tget_class(tid) == H5T_ENUM) { - unsigned int i; - if (1 == size) { - HDfprintf(stream, "0x%02x", mem[0]); - } - else { - for (i = 0; i < size; i++) { - HDfprintf(stream, "%s%02x", i?":":"", mem[i]); - } /*i*/ - }/*else 1 */ - } - else if (H5Tget_class(tid) == H5T_ARRAY) { - int k, ndims; - hsize_t i, dims[H5S_MAX_RANK], temp_nelmts, nelmts; - hid_t memb; - - /* get the array's base datatype for each element */ - memb = H5Tget_super(tid); - size = H5Tget_size(memb); - ndims = H5Tget_array_ndims(tid); - H5Tget_array_dims2(tid, dims); - HDassert(ndims >= 1 && ndims <= H5S_MAX_RANK); - - /* calculate the number of array elements */ - for (k = 0, nelmts = 1; k < ndims; k++) { - temp_nelmts = nelmts; - temp_nelmts *= dims[k]; - nelmts = (size_t) temp_nelmts; - } - - /* dump the array element */ - for (i = 0; i < nelmts; i++) { - if (render_bin_output(stream, container, memb, mem + i * size) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); - } - - H5Tclose(memb); - } - else if (H5Tget_class(tid) == H5T_VLEN) { - unsigned int i; - hsize_t nelmts; - hid_t memb; - - /* get the VL sequences's base datatype for each element */ - memb = H5Tget_super(tid); - size = H5Tget_size(memb); - - /* Get the number of sequence elements */ - nelmts = ((hvl_t *) mem)->len; - - for (i = 0; i < nelmts; i++) { - /* dump the array element */ - if (render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)) + i * size) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); - } - H5Tclose(memb); - } - else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { - if (region_output) { - /* region data */ - hid_t region_id, region_space; - H5S_sel_type region_type; - - region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem); - if (region_id >= 0) { - region_space = H5Rget_region(container, H5R_DATASET_REGION, mem); - if (region_space >= 0) { - region_type = H5Sget_select_type(region_space); - if(region_type == H5S_SEL_POINTS) - render_bin_output_region_points(region_space, region_id, stream, container); - else - render_bin_output_region_blocks(region_space, region_id, stream, container); - H5Sclose(region_space); - } /* end if (region_space >= 0) */ - H5Dclose(region_id); - } /* end if (region_id >= 0) */ - } /* end if (region_output... */ - } - else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { - } - else { - size_t i; - if (1 == size) { - HDfprintf(stream, "0x%02x", mem[0]); - } - else { - for (i = 0; i < size; i++) { - HDfprintf(stream, "%s%02x", i?":":"", mem[i]); - } /*i*/ - }/*else 1 */ - } - -CATCH - return ret_value; -} -#else int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts) { @@ -1504,7 +1254,6 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t CATCH return ret_value; } -#endif /*------------------------------------------------------------------------- * Audience: Public diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 11ab5f3..79322bc 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -852,6 +852,8 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ /* set target obj type to return */ link_info->trg_type = trg_oinfo.type; + link_info->objno = trg_oinfo.addr; + link_info->fileno = trg_oinfo.fileno; } /* end if */ else link_info->trg_type = H5O_TYPE_UNKNOWN; diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index f30974a..10c643d 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -161,6 +161,8 @@ typedef struct { H5O_type_t trg_type; /* OUT: target type */ const char *trg_path; /* OUT: target obj path. This must be freed * when used with H5tools_get_symlink_info() */ + haddr_t objno; /* OUT: target object address */ + unsigned long fileno; /* OUT: File number that target object is located in */ H5L_info_t linfo; /* OUT: link info */ h5tool_opt_t opt; /* IN: options */ } h5tool_link_info_t; diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index 0215c46..8455360 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -354,6 +354,31 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) info->paths[idx].objno = HADDR_UNDEF; } /* end trav_info_add() */ + +/*------------------------------------------------------------------------- + * Function: trav_fileinfo_add + * + * Purpose: Add a file addr & fileno to info struct + * + * Return: void + * + *------------------------------------------------------------------------- + */ +void +trav_fileinfo_add(trav_info_t *info, hid_t loc_id) +{ + H5O_info_t oinfo; + size_t idx = info->nused - 1; + + if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) + H5Oget_info_by_name(loc_id, info->paths[idx].path, &oinfo, H5P_DEFAULT); + else + H5Oget_info(loc_id, &oinfo); + + info->paths[idx].objno = oinfo.addr; + info->paths[idx].fileno = oinfo.fileno; +} /* end trav_fileinfo_add() */ + /*------------------------------------------------------------------------- * Function: trav_info_visit_obj diff --git a/tools/lib/h5trav.h b/tools/lib/h5trav.h index c416cf8..3548c6b 100644 --- a/tools/lib/h5trav.h +++ b/tools/lib/h5trav.h @@ -177,6 +177,8 @@ H5TOOLS_DLL void trav_info_free(trav_info_t *info); H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type); +H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id); + /*------------------------------------------------------------------------- * table private functions *------------------------------------------------------------------------- diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt index 0687323..909b2ca 100644 --- a/tools/misc/CMakeLists.txt +++ b/tools/misc/CMakeLists.txt @@ -319,9 +319,9 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5debug ${HDF5_INSTALL_BIN_DIR} toolsapplications) -INSTALL_PROGRAM_PDB (h5repart ${HDF5_INSTALL_BIN_DIR} toolsapplications) -INSTALL_PROGRAM_PDB (h5mkgrp ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5debug ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5repart ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5mkgrp ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am index 11c86fa..0055f39 100644 --- a/tools/misc/Makefile.am +++ b/tools/misc/Makefile.am @@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib #test script and program TEST_PROG=h5repart_gentest talign -TEST_SCRIPT=testh5repart.sh $(srcdir)/testh5mkgrp.sh +TEST_SCRIPT=testh5repart.sh testh5mkgrp.sh check_PROGRAMS=$(TEST_PROG) repart_test check_SCRIPTS=$(TEST_SCRIPT) diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index ce8e991..8c2e1c1 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,20 +69,22 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5cc.in $(srcdir)/testh5repart.sh.in \ + $(srcdir)/h5cc.in $(srcdir)/testh5mkgrp.sh.in \ + $(srcdir)/testh5repart.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) repart_test$(EXEEXT) bin_PROGRAMS = h5debug$(EXEEXT) h5repart$(EXEEXT) h5mkgrp$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/misc ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = h5cc testh5repart.sh +CONFIG_CLEAN_FILES = h5cc testh5mkgrp.sh testh5repart.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5repart_gentest$(EXEEXT) talign$(EXEEXT) @@ -75,9 +93,10 @@ h5debug_SOURCES = h5debug.c h5debug_OBJECTS = h5debug.$(OBJEXT) h5debug_LDADD = $(LDADD) h5debug_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5debug_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5debug_LDFLAGS) $(LDFLAGS) -o $@ @@ -128,7 +147,25 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } SCRIPTS = $(bin_SCRIPTS) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -139,32 +176,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \ repart_test.c talign.c DIST_SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \ repart_test.c talign.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -182,12 +222,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -456,7 +493,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib #test script and program TEST_PROG = h5repart_gentest talign -TEST_SCRIPT = testh5repart.sh $(srcdir)/testh5mkgrp.sh +TEST_SCRIPT = testh5repart.sh testh5mkgrp.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5repart$(EXEEXT) h5mkgrp$(EXEEXT) bin_SCRIPTS = h5redeploy @@ -491,6 +528,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -520,6 +561,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -531,12 +573,17 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): h5cc: $(top_builddir)/config.status $(srcdir)/h5cc.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +testh5mkgrp.sh: $(top_builddir)/config.status $(srcdir)/testh5mkgrp.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ testh5repart.sh: $(top_builddir)/config.status $(srcdir)/testh5repart.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -585,28 +632,31 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) +h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) $(EXTRA_h5debug_DEPENDENCIES) @rm -f h5debug$(EXEEXT) $(AM_V_CCLD)$(h5debug_LINK) $(h5debug_OBJECTS) $(h5debug_LDADD) $(LIBS) -h5mkgrp$(EXEEXT): $(h5mkgrp_OBJECTS) $(h5mkgrp_DEPENDENCIES) +h5mkgrp$(EXEEXT): $(h5mkgrp_OBJECTS) $(h5mkgrp_DEPENDENCIES) $(EXTRA_h5mkgrp_DEPENDENCIES) @rm -f h5mkgrp$(EXEEXT) $(AM_V_CCLD)$(h5mkgrp_LINK) $(h5mkgrp_OBJECTS) $(h5mkgrp_LDADD) $(LIBS) -h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) +h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) $(EXTRA_h5repart_DEPENDENCIES) @rm -f h5repart$(EXEEXT) $(AM_V_CCLD)$(h5repart_LINK) $(h5repart_OBJECTS) $(h5repart_LDADD) $(LIBS) -h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES) +h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES) $(EXTRA_h5repart_gentest_DEPENDENCIES) @rm -f h5repart_gentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5repart_gentest_OBJECTS) $(h5repart_gentest_LDADD) $(LIBS) -repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES) +repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES) $(EXTRA_repart_test_DEPENDENCIES) @rm -f repart_test$(EXEEXT) $(AM_V_CCLD)$(LINK) $(repart_test_OBJECTS) $(repart_test_LDADD) $(LIBS) -talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) +talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) $(EXTRA_talign_DEPENDENCIES) @rm -f talign$(EXEEXT) $(AM_V_CCLD)$(LINK) $(talign_OBJECTS) $(talign_LDADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ @@ -634,9 +684,7 @@ uninstall-binSCRIPTS: @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 's,.*/,,;$(transform)'`; \ - test -n "$$list" || exit 0; \ - echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(bindir)" && rm -f $$files + dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -654,26 +702,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -730,6 +775,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -782,10 +841,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -876,7 +940,7 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \ .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-binSCRIPTS install-data \ @@ -916,7 +980,7 @@ h5redeploy: h5redeploy.in # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -942,7 +1006,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -966,7 +1030,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -976,7 +1040,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1066,7 +1130,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1096,7 +1160,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/misc/talign.c b/tools/misc/talign.c index 88ebaa6..b77d846 100644 --- a/tools/misc/talign.c +++ b/tools/misc/talign.c @@ -148,28 +148,31 @@ out: result = 1; mname = H5Tget_member_name(fix, 0); printf("%14s (%2d) %6s = %s\n", - mname, (int)H5Tget_member_offset(fix,0), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,0), string5, (char *)(data + H5Tget_member_offset(fix, 0))); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); mname = H5Tget_member_name(fix, 1); printf("Data comparison:\n" "%14s (%2d) %6f = %f\n" " %6f = %f\n", - mname, (int)H5Tget_member_offset(fix,1), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,1), fok[0], fptr[0], fok[1], fptr[1]); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 2)); mname = H5Tget_member_name(fix, 2); printf("%14s (%2d) %6f = %f\n" " %6f = %6f\n", - mname, (int)H5Tget_member_offset(fix,2), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,2), fnok[0], fptr[0], fnok[1], fptr[1]); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); printf("\n" diff --git a/tools/misc/testh5mkgrp.sh b/tools/misc/testh5mkgrp.sh.in index 7bb98cb..dc127e8 100644 --- a/tools/misc/testh5mkgrp.sh +++ b/tools/misc/testh5mkgrp.sh.in @@ -19,6 +19,8 @@ # Tuesday, February 13, 2007 # +srcdir=@srcdir@ + TESTNAME=h5mkgrp EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -37,10 +39,6 @@ OUTDIR=../testfiles CMP='cmp -s' DIFF='diff -c' -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi test -d $OUTDIR || mkdir $OUTDIR # Print a line-line message left justified in a field of 70 characters diff --git a/tools/misc/testh5repart.sh.in b/tools/misc/testh5repart.sh.in index 7d4e020..fc33e0e 100644 --- a/tools/misc/testh5repart.sh.in +++ b/tools/misc/testh5repart.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5repart tool +srcdir=@srcdir@ + TESTNAME=h5repart EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -28,11 +30,6 @@ REPARTED_FAM_BIN=`pwd`/$REPARTED_FAM # The path of the test binary nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - test -d ../testfiles || mkdir ../testfiles actual_dir=`pwd`/../testfiles diff --git a/tools/testfiles/h5dump-help.txt b/tools/testfiles/h5dump-help.txt index 5e0a8f1..74fc104 100644 --- a/tools/testfiles/h5dump-help.txt +++ b/tools/testfiles/h5dump-help.txt @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tnofilename-with-packed-bits.ddl b/tools/testfiles/tnofilename-with-packed-bits.ddl index a82c94e..5e6f580 100644 --- a/tools/testfiles/tnofilename-with-packed-bits.ddl +++ b/tools/testfiles/tnofilename-with-packed-bits.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsIncomplete.ddl b/tools/testfiles/tpbitsIncomplete.ddl index 72d54fc..10b5a23 100644 --- a/tools/testfiles/tpbitsIncomplete.ddl +++ b/tools/testfiles/tpbitsIncomplete.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsLengthExceeded.ddl b/tools/testfiles/tpbitsLengthExceeded.ddl index d8b627c..17dd963 100644 --- a/tools/testfiles/tpbitsLengthExceeded.ddl +++ b/tools/testfiles/tpbitsLengthExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsLengthPositive.ddl b/tools/testfiles/tpbitsLengthPositive.ddl index 39cef23..6d05b47 100644 --- a/tools/testfiles/tpbitsLengthPositive.ddl +++ b/tools/testfiles/tpbitsLengthPositive.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsMaxExceeded.ddl b/tools/testfiles/tpbitsMaxExceeded.ddl index 5f35825..eca1248 100644 --- a/tools/testfiles/tpbitsMaxExceeded.ddl +++ b/tools/testfiles/tpbitsMaxExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsOffsetExceeded.ddl b/tools/testfiles/tpbitsOffsetExceeded.ddl index 92cc816..b0c655d 100644 --- a/tools/testfiles/tpbitsOffsetExceeded.ddl +++ b/tools/testfiles/tpbitsOffsetExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsOffsetNegative.ddl b/tools/testfiles/tpbitsOffsetNegative.ddl index c318834..213641b 100644 --- a/tools/testfiles/tpbitsOffsetNegative.ddl +++ b/tools/testfiles/tpbitsOffsetNegative.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/vms/src/h5pubconf.h b/vms/src/h5pubconf.h index 1180249..0427ab6 100644 --- a/vms/src/h5pubconf.h +++ b/vms/src/h5pubconf.h @@ -13,7 +13,7 @@ * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* src/H5config.h. Generated from H5config.h.in by configure. */ -/* src/H5config.h.in. Generated from configure.in by autoheader. */ +/* src/H5config.h.in. Generated from configure.ac by autoheader. */ /* Define if building universal (internal helper macro) */ /* #undef H5_AC_APPLE_UNIVERSAL_BUILD */ @@ -502,7 +502,7 @@ #define H5_PACKAGE_NAME "HDF5" /* Define to the full name and version of this package. */ -#define H5_PACKAGE_STRING "HDF5 1.9.124" +#define H5_PACKAGE_STRING "HDF5 1.9.128" /* Define to the one symbol short name of this package. */ #define H5_PACKAGE_TARNAME "hdf5" @@ -511,7 +511,7 @@ #define H5_PACKAGE_URL "" /* Define to the version of this package. */ -#define H5_PACKAGE_VERSION "1.9.124" +#define H5_PACKAGE_VERSION "1.9.128" /* Width for printf() for type `long long' or `__int64', use `ll' */ #define H5_PRINTF_LL_WIDTH "ll" @@ -674,7 +674,7 @@ /* #undef H5_USING_MEMCHECKER */ /* Version number of package */ -#define H5_VERSION "1.9.124" +#define H5_VERSION "1.9.128" /* Define if vsnprintf() returns the correct value for formatted strings that don't fit into size allowed */ diff --git a/windows/src/H5pubconf.h b/windows/src/H5pubconf.h index 23592d1..dea052b 100644 --- a/windows/src/H5pubconf.h +++ b/windows/src/H5pubconf.h @@ -527,7 +527,7 @@ #define H5_PACKAGE_NAME "HDF5" /* Define to the full name and version of this package. */ -#define H5_PACKAGE_STRING "HDF5 1.9.124" +#define H5_PACKAGE_STRING "HDF5 1.9.128" /* Define to the one symbol short name of this package. */ #define H5_PACKAGE_TARNAME "hdf5" @@ -536,7 +536,7 @@ #define H5_PACKAGE_URL "" /* Define to the version of this package. */ -#define H5_PACKAGE_VERSION "1.9.124" +#define H5_PACKAGE_VERSION "1.9.128" /* Width for printf() for type `long long' or `__int64', use `ll' */ #define H5_PRINTF_LL_WIDTH "I64" @@ -707,7 +707,7 @@ /* #undef H5_USING_MEMCHECKER */ /* Version number of package */ -#define H5_VERSION "1.9.124" +#define H5_VERSION "1.9.128" /* Define if vsnprintf() returns the correct value for formatted strings that don't fit into size allowed */ |