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author | Raymond Lu <songyulu@hdfgroup.org> | 2009-02-24 19:45:17 (GMT) |
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committer | Raymond Lu <songyulu@hdfgroup.org> | 2009-02-24 19:45:17 (GMT) |
commit | 24341c6eb4bb584583efeb4b7d1592ae7f5f0680 (patch) | |
tree | d30d579fdb6dd511055fd0797b41dcf95d888715 | |
parent | d77d4b17425e00f99f3cc1512e94dedf05f27aa5 (diff) | |
download | hdf5-24341c6eb4bb584583efeb4b7d1592ae7f5f0680.zip hdf5-24341c6eb4bb584583efeb4b7d1592ae7f5f0680.tar.gz hdf5-24341c6eb4bb584583efeb4b7d1592ae7f5f0680.tar.bz2 |
[svn-r16516] To improve the performance of querying the info of a link (bug #1404). When the index was set to
creation order in query function but there's no creation order indexed in the file, the library
tried to build and sort a table of all links. To optimize it, let the library use the B-tree for
names of the links.
Tested on jam. I tested the same change for v1.8 with h5committest.
-rw-r--r-- | src/H5Gdense.c | 111 |
1 files changed, 66 insertions, 45 deletions
diff --git a/src/H5Gdense.c b/src/H5Gdense.c index 2bca4fa..6cc15b8 100644 --- a/src/H5Gdense.c +++ b/src/H5Gdense.c @@ -656,29 +656,34 @@ H5G_dense_lookup_by_idx(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo, /* Determine the address of the index to use */ if(idx_type == H5_INDEX_NAME) { - /* Check if "native" order is OK - since names are hashed, getting them - * in strictly increasing or decreasing order requires building a - * table and sorting it. + /* Since names are hashed, getting them in strictly increasing or + * decreasing order requires building a table and sorting it. + * If the order is native, use the B-tree for names. */ - if(order == H5_ITER_NATIVE) { - bt2_addr = linfo->name_bt2_addr; - bt2_class = H5G_BT2_NAME; - HDassert(H5F_addr_defined(bt2_addr)); - } /* end if */ - else - bt2_addr = HADDR_UNDEF; + bt2_addr = HADDR_UNDEF; } /* end if */ else { HDassert(idx_type == H5_INDEX_CRT_ORDER); /* This address may not be defined if creation order is tracked, but * there's no index on it. If there's no v2 B-tree that indexes - * the links, a table will be built. + * the links and the order is native, use the B-tree for names. + * Otherwise, build a table. */ bt2_addr = linfo->corder_bt2_addr; bt2_class = H5G_BT2_CORDER; } /* end else */ + /* If the order is native and there's no B-tree for indexing the links, + * use the B-tree for names instead of building a table to speed up the + * process. + */ + if(order == H5_ITER_NATIVE && !H5F_addr_defined(bt2_addr)) { + bt2_addr = linfo->name_bt2_addr; + bt2_class = H5G_BT2_NAME; + HDassert(H5F_addr_defined(bt2_addr)); + } /* end if */ + /* If there is an index defined for the field, use it */ if(H5F_addr_defined(bt2_addr)) { H5G_bt2_ud_lbi_t udata; /* User data for v2 B-tree link lookup */ @@ -953,31 +958,37 @@ H5G_dense_iterate(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo, /* Determine the address of the index to use */ if(idx_type == H5_INDEX_NAME) { - /* Check if "native" order is OK - since names are hashed, getting them - * in strictly increasing or decreasing order requires building a - * table and sorting it. + /* Since names are hashed, getting them in strictly increasing or + * decreasing order requires building a table and sorting it. If + * the order is native, use the B-tree for names. */ - if(order == H5_ITER_NATIVE) { - HDassert(H5F_addr_defined(linfo->name_bt2_addr)); - bt2_addr = linfo->name_bt2_addr; - bt2_class = H5G_BT2_NAME; - } /* end if */ - else - bt2_addr = HADDR_UNDEF; + bt2_addr = HADDR_UNDEF; } /* end if */ else { HDassert(idx_type == H5_INDEX_CRT_ORDER); /* This address may not be defined if creation order is tracked, but * there's no index on it. If there's no v2 B-tree that indexes - * the links, a table will be built. + * the links and the order is native, use the B-tree for names. + * Otherwise, build a table. */ bt2_addr = linfo->corder_bt2_addr; bt2_class = H5G_BT2_CORDER; } /* end else */ + /* If the order is native and there's no B-tree for indexing the links, + * use the B-tree for names instead of building a table to speed up the + * process. + */ + if(order == H5_ITER_NATIVE && !H5F_addr_defined(bt2_addr)) { + HDassert(H5F_addr_defined(linfo->name_bt2_addr)); + bt2_addr = linfo->name_bt2_addr; + bt2_class = H5G_BT2_NAME; + } /* end if */ + /* Check on iteration order */ - if(order == H5_ITER_NATIVE && H5F_addr_defined(bt2_addr)) { + if(order == H5_ITER_NATIVE) { + HDassert(H5F_addr_defined(bt2_addr)); H5G_bt2_ud_it_t udata; /* User data for iterator callback */ /* Open the fractal heap */ @@ -1146,29 +1157,34 @@ H5G_dense_get_name_by_idx(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo, /* Determine the address of the index to use */ if(idx_type == H5_INDEX_NAME) { - /* Check if "native" order is OK - since names are hashed, getting them - * in strictly increasing or decreasing order requires building a - * table and sorting it. + /* Since names are hashed, getting them in strictly increasing or + * decreasing order requires building a table and sorting it. If + * the order is native, use the B-tree for names. */ - if(order == H5_ITER_NATIVE) { - bt2_addr = linfo->name_bt2_addr; - bt2_class = H5G_BT2_NAME; - HDassert(H5F_addr_defined(bt2_addr)); - } /* end if */ - else - bt2_addr = HADDR_UNDEF; + bt2_addr = HADDR_UNDEF; } /* end if */ else { HDassert(idx_type == H5_INDEX_CRT_ORDER); /* This address may not be defined if creation order is tracked, but * there's no index on it. If there's no v2 B-tree that indexes - * the links, a table will be built. + * the links and the order is native, use the B-tree for names. + * Otherwise, build a table. */ bt2_addr = linfo->corder_bt2_addr; bt2_class = H5G_BT2_CORDER; } /* end else */ + /* If the order is native and there's no B-tree for indexing the links, + * use the B-tree for names instead of building a table to speed up the + * process. + */ + if(order == H5_ITER_NATIVE && !H5F_addr_defined(bt2_addr)) { + bt2_addr = linfo->name_bt2_addr; + bt2_class = H5G_BT2_NAME; + HDassert(H5F_addr_defined(bt2_addr)); + } /* end if */ + /* If there is an index defined for the field, use it */ if(H5F_addr_defined(bt2_addr)) { H5G_bt2_ud_gnbi_t udata; /* User data for v2 B-tree callback */ @@ -1561,29 +1577,34 @@ H5G_dense_remove_by_idx(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo, /* Determine the address of the index to use */ if(idx_type == H5_INDEX_NAME) { - /* Check if "native" order is OK - since names are hashed, getting them - * in strictly increasing or decreasing order requires building a - * table and sorting it. + /* Since names are hashed, getting them in strictly increasing or + * decreasing order requires building a table and sorting it. If + * the order is native, use the B-tree for names. */ - if(order == H5_ITER_NATIVE) { - bt2_addr = linfo->name_bt2_addr; - bt2_class = H5G_BT2_NAME; - HDassert(H5F_addr_defined(bt2_addr)); - } /* end if */ - else - bt2_addr = HADDR_UNDEF; + bt2_addr = HADDR_UNDEF; } /* end if */ else { HDassert(idx_type == H5_INDEX_CRT_ORDER); /* This address may not be defined if creation order is tracked, but * there's no index on it. If there's no v2 B-tree that indexes - * the links, a table will be built. + * the links and the order is native, use the B-tree for names. + * Otherwise, build a table. */ bt2_addr = linfo->corder_bt2_addr; bt2_class = H5G_BT2_CORDER; } /* end else */ + /* If the order is native and there's no B-tree for indexing the links, + * use the B-tree for names instead of building a table to speed up the + * process. + */ + if(order == H5_ITER_NATIVE && !H5F_addr_defined(bt2_addr)) { + bt2_addr = linfo->name_bt2_addr; + bt2_class = H5G_BT2_NAME; + HDassert(H5F_addr_defined(bt2_addr)); + } /* end if */ + /* If there is an index defined for the field, use it */ if(H5F_addr_defined(bt2_addr)) { H5G_bt2_ud_rmbi_t udata; /* User data for v2 B-tree record removal */ |