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| author | Allen Byrne <byrn@hdfgroup.org> | 2019-12-02 14:00:20 (GMT) |
|---|---|---|
| committer | Allen Byrne <byrn@hdfgroup.org> | 2019-12-02 14:00:20 (GMT) |
| commit | 7e92c2e3e503abd983fe5557efa78e61474a7850 (patch) | |
| tree | 62969dd4d35575d1fad78a860a76c61d2da8a130 | |
| parent | dcae4544a3cf7b262aeb8e934b55b40fd59ca25a (diff) | |
| parent | 0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f (diff) | |
| download | hdf5-7e92c2e3e503abd983fe5557efa78e61474a7850.zip hdf5-7e92c2e3e503abd983fe5557efa78e61474a7850.tar.gz hdf5-7e92c2e3e503abd983fe5557efa78e61474a7850.tar.bz2 | |
Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f':
Fix missing free in H5T__ref_mem_read()
Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls().
Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere.
Add support for point selections to H5S_select_project_intersection.
Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf3)"
Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
H5R: fix H5Tconv to check for null references
Trivial parameter renaming in VOL API calls.
Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
80 files changed, 1275 insertions, 837 deletions
diff --git a/config/commence.am b/config/commence.am index 830c494..a16eee5 100644 --- a/config/commence.am +++ b/config/commence.am @@ -70,7 +70,7 @@ H5CPP=${DESTDIR}$(bindir)/h5c++ # instead of CFLAGS, as CFLAGS is reserved solely for the user to define. # This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well. -AM_CFLAGS=@AM_CFLAGS@ @H5_CFLAGS@ @H5_ECFLAGS@ +AM_CFLAGS=@AM_CFLAGS@ @H5_CFLAGS@ AM_FCFLAGS=@AM_FCFLAGS@ @H5_FCFLAGS@ AM_CXXFLAGS=@AM_CXXFLAGS@ @H5_CXXFLAGS@ AM_CPPFLAGS=@AM_CPPFLAGS@ @H5_CPPFLAGS@ diff --git a/config/gnu-flags b/config/gnu-flags index bc120a8..6355ccf 100644 --- a/config/gnu-flags +++ b/config/gnu-flags @@ -168,44 +168,12 @@ if test "X-gcc" = "X-$cc_vendor"; then # NOTE: Disable the -Wformat-nonliteral from -Wformat=2 here and re-add # it to the developer flags. # - H5_CFLAGS="$H5_CFLAGS -pedantic -Wall -Wextra" - H5_ECFLAGS="$H5_ECFLAGS -Werror=bad-function-cast" - H5_ECFLAGS="$H5_ECFLAGS -Werror=cast-align" - H5_CFLAGS="$H5_CFLAGS -Wcast-qual -Wconversion" - H5_ECFLAGS="$H5_ECFLAGS -Werror=declaration-after-statement" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wdisabled-optimization" - H5_CFLAGS="$H5_CFLAGS -Wfloat-equal" - H5_CFLAGS="$H5_CFLAGS -Wformat=2 -Wno-format-nonliteral -Winit-self -Winvalid-pch" - H5_ECFLAGS="$H5_ECFLAGS -Werror=missing-declarations" - H5_CFLAGS="$H5_CFLAGS -Wmissing-include-dirs" - H5_ECFLAGS="$H5_ECFLAGS -Werror=missing-prototypes" - H5_ECFLAGS="$H5_ECFLAGS -Werror=nested-externs" - H5_ECFLAGS="$H5_ECFLAGS -Werror=old-style-definition" - H5_ECFLAGS="$H5_ECFLAGS -Werror=packed" - H5_ECFLAGS="$H5_ECFLAGS -Werror=redundant-decls" - H5_ECFLAGS="$H5_ECFLAGS -Werror=shadow" - H5_ECFLAGS="$H5_ECFLAGS -Werror=strict-prototypes" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wswitch-default" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wswitch-enum" - H5_CFLAGS="$H5_CFLAGS -Wundef" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wunused-macros" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wunsafe-loop-optimizations" - H5_CFLAGS="$H5_CFLAGS -Wwrite-strings" - - # - # HDF5 code should not trigger the following warnings under any - # circumstances, so ask the compiler to treat them as errors: - # -# H5_ECFLAGS="$H5_ECFLAGS -Werror=discarded-qualifiers" - H5_ECFLAGS="$H5_ECFLAGS -Werror=implicit-function-declaration" - H5_CFLAGS="$H5_CFLAGS -Wmaybe-uninitialized" - H5_ECFLAGS="$H5_ECFLAGS -Werror=pointer-sign" - H5_ECFLAGS="$H5_ECFLAGS -Werror=pointer-to-int-cast" - H5_ECFLAGS="$H5_ECFLAGS -Werror=switch" - H5_ECFLAGS="$H5_ECFLAGS -Werror=unused-but-set-variable" - H5_ECFLAGS="$H5_ECFLAGS -Werror=unused-function" - H5_ECFLAGS="$H5_ECFLAGS -Werror=unused-parameter" - H5_ECFLAGS="$H5_ECFLAGS -Werror=unused-variable" + H5_CFLAGS="$H5_CFLAGS -pedantic -Wall -Wextra -Wbad-function-cast -Wc++-compat -Wcast-align" + H5_CFLAGS="$H5_CFLAGS -Wcast-qual -Wconversion -Wdeclaration-after-statement -Wdisabled-optimization -Wfloat-equal" + H5_CFLAGS="$H5_CFLAGS -Wformat=2 -Wno-format-nonliteral -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-include-dirs" + H5_CFLAGS="$H5_CFLAGS -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked" + H5_CFLAGS="$H5_CFLAGS -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-enum -Wswitch-default" + H5_CFLAGS="$H5_CFLAGS -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings" ###################### # Developer warnings # @@ -254,34 +222,17 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc 4.3 if test $cc_vers_major -ge 5 -o $cc_vers_major -eq 4 -a $cc_vers_minor -ge 3; then - H5_CFLAGS="$H5_CFLAGS -Wlogical-op" - # - # Lots of noise, questionable benefit: - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wlarger-than=2560" - # + H5_CFLAGS="$H5_CFLAGS -Wlogical-op -Wlarger-than=2560" fi # gcc 4.4 if test $cc_vers_major -ge 5 -o $cc_vers_major -eq 4 -a $cc_vers_minor -ge 4; then - H5_CFLAGS="$H5_CFLAGS -Wsync-nand -Wpacked-bitfield-compat" - # - # Lots of noise, questionable benefit: - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wframe-larger-than=16384" - # + H5_CFLAGS="$H5_CFLAGS -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat" fi # gcc 4.5 if test $cc_vers_major -ge 5 -o $cc_vers_major -eq 4 -a $cc_vers_minor -ge 5; then - H5_CFLAGS="$H5_CFLAGS -Wstrict-overflow=5 -Wunsuffixed-float-constants" - # - # -Wjump-misses-init makes lots of noise for a questionable benefit. - # Can jumping over an initialization in C cause any harm, if - # the variable is never *used* before it has been initialized? - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wjump-misses-init" - # + H5_CFLAGS="$H5_CFLAGS -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants" fi # gcc 4.6 @@ -293,17 +244,7 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc 4.7 if test $cc_vers_major -ge 5 -o $cc_vers_major -eq 4 -a $cc_vers_minor -ge 7; then - # - # It's not clear that -Wvector-operation-performance warnings are - # actionable. - # - # -Wstack-usage=8192 warnings need better justification; - # if justifiable, should be enabled on a branch and swept up there - # before burdening the whole development team. - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wstack-usage=8192" - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wvector-operation-performance" - + H5_CFLAGS="$H5_CFLAGS -Wstack-usage=8192 -Wvector-operation-performance" DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wsuggest-attribute=pure -Wsuggest-attribute=noreturn" NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn" fi @@ -322,21 +263,11 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc 5 if test $cc_vers_major -ge 5; then H5_CFLAGS="$H5_CFLAGS -Warray-bounds=2 -Wc99-c11-compat" - H5_ECFLAGS="$H5_ECFLAGS -Werror=incompatible-pointer-types" fi # gcc 6 if test $cc_vers_major -ge 6; then - H5_CFLAGS="$H5_CFLAGS -Wunused-const-variable -Whsa -Wnormalized" - # - # Unacceptably noisy on HDF5 right now. - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wnull-dereference" - # - # Careful! -Wduplicated-cond, combined with HDF5's heavy use of - # macros, can make a lot of noise. - # - DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wduplicated-cond" + H5_CFLAGS="$H5_CFLAGS -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa -Wnormalized" fi # gcc 7 @@ -347,13 +278,6 @@ if test "X-gcc" = "X-$cc_vendor"; then # gcc 8 if test $cc_vers_major -ge 8; then - # For GCC 8, promote maybe-initialized warnings to an error. GCC 8 - # reports 0 maybe-uninitialized warnings where earlier versions - # make many false reports. GCC 8 seems to analyze calls to static - # in order to detect initializations that occur there. It's possible - # that GCC 8 only performs that analysis at -O3, though. - H5_ECFLAGS="$H5_ECFLAGS -Werror=maybe-uninitialized" - H5_ECFLAGS="$H5_ECFLAGS -Werror=cast-function-type" DEVELOPER_WARNING_CFLAGS="$DEVELOPER_WARNING_CFLAGS -Wstringop-overflow=4 -Wsuggest-attribute=cold -Wsuggest-attribute=malloc" NO_DEVELOPER_WARNING_CFLAGS="$NO_DEVELOPER_WARNING_CFLAGS -Wno-suggest-attribute=cold -Wno-suggest-attribute=malloc" H5_CFLAGS="$H5_CFLAGS -Wattribute-alias -Wcast-align=strict -Wshift-overflow=2" diff --git a/configure.ac b/configure.ac index 5851b32..0eada60 100644 --- a/configure.ac +++ b/configure.ac @@ -103,11 +103,7 @@ AC_SUBST([AR_FLAGS]) ## H5_CFLAGS (and company) are for CFLAGS that should be used on HDF5, but ## not exported to h5cc (or h5fc, etc.) -## -## H5_ECFLAGS is for warnings that should be treated as errors. -## AC_SUBST([H5_CFLAGS]) -AC_SUBST([H5_ECFLAGS]) AC_SUBST([H5_CPPFLAGS]) AC_SUBST([H5_FCFLAGS]) AC_SUBST([H5_CXXFLAGS]) diff --git a/hl/src/H5DS.c b/hl/src/H5DS.c index ce61028..b24f887 100644 --- a/hl/src/H5DS.c +++ b/hl/src/H5DS.c @@ -1434,10 +1434,6 @@ herr_t H5DSset_label(hid_t did, unsigned int idx, const char *label) char ** buf; /* discarding the 'const' qualifier in the free */ char const ** const_buf; /* buf calls */ } u; - - u.buf = NULL; - u.const_buf = NULL; - /*------------------------------------------------------------------------- * parameter checking *------------------------------------------------------------------------- diff --git a/hl/test/H5srcdir_str.h.in b/hl/test/H5srcdir_str.h.in index ba30a88..bab1df3 100644 --- a/hl/test/H5srcdir_str.h.in +++ b/hl/test/H5srcdir_str.h.in @@ -16,5 +16,5 @@ */ /* Set the 'srcdir' path from configure time */ -#define config_srcdir "@srcdir@" +static const char *config_srcdir = "@srcdir@"; diff --git a/src/H5Cdbg.c b/src/H5Cdbg.c index cb1d0e2..1f55e86 100644 --- a/src/H5Cdbg.c +++ b/src/H5Cdbg.c @@ -319,8 +319,9 @@ H5C_dump_cache_skip_list(H5C_t * cache_ptr, char * calling_fcn) (int)(entry_ptr->is_dirty), entry_ptr->type->name); - HDfprintf(stdout, " node_ptr = %p, item = %p\n", - node_ptr, H5SL_item(node_ptr)); + HDfprintf(stdout, " node_ptr = 0x%llx, item = %p\n", + (unsigned long long)node_ptr, + H5SL_item(node_ptr)); /* increment node_ptr before we delete its target */ node_ptr = H5SL_next(node_ptr); diff --git a/src/H5Cpkg.h b/src/H5Cpkg.h index b8648f0..9156c0d 100644 --- a/src/H5Cpkg.h +++ b/src/H5Cpkg.h @@ -4694,7 +4694,7 @@ struct H5C_t { uint32_t num_last_entries; #if H5C_DO_SANITY_CHECKS int32_t slist_len_increase; - int64_t slist_size_increase; + ssize_t slist_size_increase; #endif /* H5C_DO_SANITY_CHECKS */ /* Fields for maintaining list of tagged entries */ diff --git a/src/H5Dchunk.c b/src/H5Dchunk.c index 947f611..381ca4a 100644 --- a/src/H5Dchunk.c +++ b/src/H5Dchunk.c @@ -284,8 +284,7 @@ static int H5D__chunk_format_convert_cb(const H5D_chunk_rec_t *chunk_rec, void * static herr_t H5D__chunk_set_info_real(H5O_layout_chunk_t *layout, unsigned ndims, const hsize_t *curr_dims, const hsize_t *max_dims); static void *H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline); -static void *H5D__chunk_mem_xfree(void *chk, void *pline); -static void H5D__chunk_mem_xfree_wrapper(void *chk, void *pline); +static void *H5D__chunk_mem_xfree(void *chk, const void *pline); static void *H5D__chunk_mem_realloc(void *chk, size_t size, const H5O_pline_t *pline); static herr_t H5D__chunk_cinfo_cache_reset(H5D_chunk_cached_t *last); @@ -1101,10 +1100,14 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf H5D_chunk_map_t *fm) { const H5D_t *dataset = io_info->dset; /* Local pointer to dataset info */ + H5S_t *tmp_mspace = NULL; /* Temporary memory dataspace */ hssize_t old_offset[H5O_LAYOUT_NDIMS]; /* Old selection offset */ htri_t file_space_normalized = FALSE; /* File dataspace was normalized */ + H5T_t *file_type = NULL; /* Temporary copy of file datatype for iteration */ + hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */ unsigned f_ndims; /* The number of dimensions of the file's dataspace */ int sm_ndims; /* The number of dimensions of the memory buffer's dataspace (signed) */ + char bogus; /* "bogus" buffer to pass to selection iterator */ unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ @@ -1428,7 +1431,7 @@ H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline) *------------------------------------------------------------------------- */ static void * -H5D__chunk_mem_xfree(void *chk, void *_pline) +H5D__chunk_mem_xfree(void *chk, const void *_pline) { const H5O_pline_t *pline = (const H5O_pline_t *)_pline; @@ -1444,17 +1447,6 @@ H5D__chunk_mem_xfree(void *chk, void *_pline) FUNC_LEAVE_NOAPI(NULL) } /* H5D__chunk_mem_xfree() */ -/* H5D__chunk_mem_xfree_wrapper() safely adapts the type of - * H5D__chunk_mem_xfree() to an H5MM_free_t callback, without making - * compilers warn. It is used with H5D__chunk_mem_xfree_wrapper(), for - * example. - */ -static void -H5D__chunk_mem_xfree_wrapper(void *chk, void *_pline) -{ - (void)H5D__chunk_mem_xfree(chk, _pline); -} - /*------------------------------------------------------------------------- * Function: H5D__chunk_mem_realloc @@ -2115,7 +2107,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm) } /* end for */ /* Adjust the selection */ - if(H5S_hyper_adjust_s(chunk_info->mspace, chunk_adjust) < 0) + if(H5S_SELECT_ADJUST_S(chunk_info->mspace, chunk_adjust) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to adjust selection") } /* end else */ @@ -2128,7 +2120,6 @@ done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5D__create_chunk_mem_map_hyper() */ - /*------------------------------------------------------------------------- * Function: H5D__create_mem_map_1d @@ -2148,6 +2139,12 @@ H5D__create_chunk_mem_map_1d(const H5D_chunk_map_t *fm) { H5D_chunk_info_t *chunk_info; /* Pointer to chunk information */ H5SL_node_t *curr_node; /* Current node in skip list */ + hsize_t file_sel_start[H5S_MAX_RANK]; /* Offset of low bound of file selection */ + hsize_t file_sel_end[H5S_MAX_RANK]; /* Offset of high bound of file selection */ + hsize_t mem_sel_start[H5S_MAX_RANK]; /* Offset of low bound of file selection */ + hsize_t mem_sel_end[H5S_MAX_RANK]; /* Offset of high bound of file selection */ + hssize_t adjust[H5S_MAX_RANK]; /* Adjustment to make to all file chunks */ + unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -2172,18 +2169,17 @@ H5D__create_chunk_mem_map_1d(const H5D_chunk_map_t *fm) chunk_info->mspace_shared = TRUE; } /* end if */ else { + HDassert(fm->m_ndims == 1); hsize_t mem_sel_start[H5S_MAX_RANK]; /* Offset of low bound of file selection */ hsize_t mem_sel_end[H5S_MAX_RANK]; /* Offset of high bound of file selection */ - HDassert(fm->m_ndims == 1); - if(H5S_SELECT_BOUNDS(fm->mem_space, mem_sel_start, mem_sel_end) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get file selection bound info") /* Iterate over each chunk in the chunk list */ curr_node = H5SL_first(fm->sel_chunks); while(curr_node) { - hsize_t schunk_points; /* Number of elements in chunk selection */ + hssize_t schunk_points; /* Number of elements in chunk selection */ hsize_t tmp_count = 1; /* Get pointer to chunk's information */ @@ -4454,7 +4450,7 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, hsize_ /* (delay allocating fill buffer for VL datatypes until refilling) */ /* (casting away const OK - QAK) */ if(H5D__fill_init(&fb_info, NULL, (H5MM_allocate_t)H5D__chunk_mem_alloc, - (void *)pline, H5D__chunk_mem_xfree_wrapper, (void *)pline, + (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline, &dset->shared->dcpl_cache.fill, dset->shared->type, dset->shared->type_id, (size_t)0, orig_chunk_size) < 0) HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize fill buffer info") @@ -7156,6 +7152,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_ hsize_t num_chunks = 0; /* Number of written chunks */ H5D_rdcc_ent_t *ent; /* Cache entry */ const H5D_rdcc_t *rdcc = NULL; /* Raw data chunk cache */ + const H5O_layout_t *layout; /* Dataset layout */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_PACKAGE_TAG(dset->oloc.addr) @@ -7165,6 +7162,7 @@ H5D__get_num_chunks(const H5D_t *dset, const H5S_t H5_ATTR_UNUSED *space, hsize_ HDassert(space); HDassert(nchunks); + layout = &(dset->shared->layout); /* Dataset layout */ rdcc = &(dset->shared->cache.chunk); /* raw data chunk cache */ HDassert(rdcc); diff --git a/src/H5FDhdfs.c b/src/H5FDhdfs.c index 0b954cf..819d200 100644 --- a/src/H5FDhdfs.c +++ b/src/H5FDhdfs.c @@ -581,6 +581,7 @@ hid_t H5FD_hdfs_init(void) { hid_t ret_value = H5I_INVALID_HID; /* Return value */ + unsigned int bin_i; FUNC_ENTER_NOAPI(FAIL) diff --git a/src/H5FDlog.c b/src/H5FDlog.c index 1c7d549..ac5667f 100644 --- a/src/H5FDlog.c +++ b/src/H5FDlog.c @@ -489,8 +489,8 @@ H5FD_log_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr) #endif #ifdef H5_HAVE_GETTIMEOFDAY struct timeval timeval_start; - struct timeval open_timeval_diff = {0, 0}; - struct timeval stat_timeval_diff = {0, 0}; + struct timeval open_timeval_diff; + struct timeval stat_timeval_diff; #endif /* H5_HAVE_GETTIMEOFDAY */ h5_stat_t sb; H5FD_t *ret_value = NULL; /* Return value */ diff --git a/src/H5FSsection.c b/src/H5FSsection.c index cf4a587..df67bd9 100644 --- a/src/H5FSsection.c +++ b/src/H5FSsection.c @@ -371,10 +371,10 @@ HDfprintf(stderr, "%s: fspace->alloc_sect_size = %Hu, fspace->sect_size = %Hu\n" /* Check if section info lock count dropped to zero */ if(fspace->sinfo_lock_count == 0) { hbool_t release_sinfo_space = FALSE; /* Flag to indicate section info space in file should be released */ - hbool_t closing_or_flushing = f->shared->closing; /* Is closing or flushing in progress */ + hbool_t flush_in_progress = FALSE; /* Is flushing in progress */ - /* Check whether cache-flush is in progress if closing is not. */ - if(!closing_or_flushing && H5AC_get_cache_flush_in_progress(f->shared->cache, &closing_or_flushing) < 0) + /* Check whether cache is flush_in_progress */ + if(H5AC_get_cache_flush_in_progress(f->shared->cache, &flush_in_progress) < 0) HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Can't get flush_in_progress") /* Check if we actually protected the section info */ @@ -390,7 +390,7 @@ HDfprintf(stderr, "%s: fspace->alloc_sect_size = %Hu, fspace->sect_size = %Hu\n" cache_flags |= H5AC__DIRTIED_FLAG; /* On file close or flushing, does not allow section info to shrink in size */ - if(closing_or_flushing) { + if(f->shared->closing || flush_in_progress) { if(fspace->sect_size > fspace->alloc_sect_size) cache_flags |= H5AC__DELETED_FLAG | H5AC__TAKE_OWNERSHIP_FLAG; else @@ -441,7 +441,7 @@ HDfprintf(stderr, "%s: Relinquishing section info ownership\n", FUNC); /* Set flag to release section info space in file */ /* On file close or flushing, only need to release section info with size bigger than previous section */ - if(closing_or_flushing) { + if(f->shared->closing || flush_in_progress) { if(fspace->sect_size > fspace->alloc_sect_size) release_sinfo_space = TRUE; else diff --git a/src/H5Fint.c b/src/H5Fint.c index 435c1be..153ec2f 100644 --- a/src/H5Fint.c +++ b/src/H5Fint.c @@ -3654,9 +3654,9 @@ done: /*------------------------------------------------------------------------- - * Function: H5F__get_file_id + * Function: H5F_get_file_id * - * Purpose: The package version of H5Iget_file_id(), obtains the file + * Purpose: The private version of H5Iget_file_id(), obtains the file * ID given an object ID. * * Return: Success: The file ID associated with the object @@ -3665,22 +3665,31 @@ done: *------------------------------------------------------------------------- */ hid_t -H5F__get_file_id(H5F_t *file, hbool_t app_ref) +H5F_get_file_id(H5VL_object_t *vol_obj, H5I_type_t obj_type, hbool_t app_ref) { - hid_t file_id = H5I_INVALID_HID; /* File ID */ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ + void *vol_obj_file = NULL; /* File object pointer */ + H5VL_loc_params_t loc_params; /* Location parameters */ + hid_t file_id = H5I_INVALID_HID; /* File ID for object */ + hid_t ret_value = H5I_INVALID_HID; /* Return value */ - FUNC_ENTER_PACKAGE + FUNC_ENTER_NOAPI(H5I_INVALID_HID) + + /* Set location parameters */ + loc_params.type = H5VL_OBJECT_BY_SELF; + loc_params.obj_type = obj_type; + + /* Retrieve VOL file from object */ + if(H5VL_object_get(vol_obj, &loc_params, H5VL_OBJECT_GET_FILE, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, &vol_obj_file) < 0) + HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't retrieve file from object") /* Check if the file's ID already exists */ - if(H5I_find_id(file, H5I_FILE, &file_id) < 0) + if(H5I_find_id(vol_obj_file, H5I_FILE, &file_id) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTGET, H5I_INVALID_HID, "getting file ID failed") /* If the ID does not exist, register it with the VOL connector */ if(H5I_INVALID_HID == file_id) { - if((file_id = H5VL_wrap_register(H5I_FILE, file, app_ref)) < 0) + if((file_id = H5VL_register(H5I_FILE, vol_obj_file, vol_obj->connector, app_ref)) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to atomize file handle") - file->id_exists = TRUE; } /* end if */ else { /* Increment ref count on existing ID */ @@ -3693,44 +3702,6 @@ H5F__get_file_id(H5F_t *file, hbool_t app_ref) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5F__get_file_id() */ - - -/*------------------------------------------------------------------------- - * Function: H5F_get_file_id - * - * Purpose: The private version of H5Iget_file_id(), obtains the file - * ID given an object ID. - * - * Return: Success: The file ID associated with the object - * Failure: H5I_INVALID_HID - * - *------------------------------------------------------------------------- - */ -hid_t -H5F_get_file_id(hid_t obj_id, H5I_type_t type, hbool_t app_ref) -{ - H5VL_object_t *vol_obj; /* File info */ - hid_t file_id = H5I_INVALID_HID; /* File ID for object */ - hid_t ret_value = H5I_INVALID_HID; /* Return value */ - - FUNC_ENTER_NOAPI(H5I_INVALID_HID) - - /* Get the object pointer */ - if(NULL == (vol_obj = H5VL_vol_object(obj_id))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid identifier") - - /* Get the file through the VOL */ - if(H5VL_file_optional(vol_obj, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL, H5VL_NATIVE_FILE_GET_FILE_ID, (int)type, (int)app_ref, &file_id) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, H5I_INVALID_HID, "unable to get file ID") - if(H5I_INVALID_HID == file_id) - HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, H5I_INVALID_HID, "unable to get the file ID through the VOL") - - /* Set return value */ - ret_value = file_id; - -done: - FUNC_LEAVE_NOAPI(ret_value) } /* end H5F_get_file_id() */ diff --git a/src/H5Fpkg.h b/src/H5Fpkg.h index 7d9a090..6e2c994 100644 --- a/src/H5Fpkg.h +++ b/src/H5Fpkg.h @@ -412,7 +412,6 @@ H5_DLL herr_t H5F__start_swmr_write(H5F_t *f); H5_DLL herr_t H5F__close(H5F_t *f); H5_DLL herr_t H5F__set_libver_bounds(H5F_t *f, H5F_libver_t low, H5F_libver_t high); H5_DLL H5F_t *H5F__get_file(void *obj, H5I_type_t type); -H5_DLL hid_t H5F__get_file_id(H5F_t *file, hbool_t app_ref); H5_DLL herr_t H5F__get_cont_info(const H5F_t *f, H5VL_file_cont_info_t *info); /* File mount related routines */ diff --git a/src/H5Fprivate.h b/src/H5Fprivate.h index e1a8a2f..cfb796c 100644 --- a/src/H5Fprivate.h +++ b/src/H5Fprivate.h @@ -732,7 +732,7 @@ typedef enum H5F_prefix_open_t { /* Private functions */ H5_DLL H5F_t *H5F_open(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id); H5_DLL herr_t H5F_try_close(H5F_t *f, hbool_t *was_closed/*out*/); -H5_DLL hid_t H5F_get_file_id(hid_t obj_id, H5I_type_t id_type, hbool_t app_ref); +H5_DLL hid_t H5F_get_file_id(H5VL_object_t *vol_obj, H5I_type_t obj_type, hbool_t app_ref); /* Functions that retrieve values from the file struct */ H5_DLL H5F_libver_t H5F_get_low_bound(const H5F_t *f); diff --git a/src/H5Fsuper_cache.c b/src/H5Fsuper_cache.c index ce216a2..125d6cf 100644 --- a/src/H5Fsuper_cache.c +++ b/src/H5Fsuper_cache.c @@ -347,9 +347,9 @@ static herr_t H5F__cache_superblock_get_final_load_size(const void *_image, size_t image_len, void *_udata, size_t *actual_len) { - const uint8_t *image = _image; /* Pointer into raw data buffer */ + const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ H5F_superblock_cache_ud_t *udata = (H5F_superblock_cache_ud_t *)_udata; /* User data */ - H5F_super_t sblock; /* Temporary file superblock */ + H5F_super_t sblock; /* Temporary file superblock */ htri_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -361,15 +361,6 @@ H5F__cache_superblock_get_final_load_size(const void *_image, size_t image_len, HDassert(*actual_len == image_len); HDassert(image_len >= H5F_SUPERBLOCK_FIXED_SIZE + 6); - /* Initialize because GCC 5.5 does not realize that - * H5F__superblock_prefix_decode() initializes it. - * - * TBD condition on compiler version. - */ - sblock.super_vers = 0; - sblock.sizeof_addr = 0; - sblock.sizeof_size = 0; - /* Deserialize the file superblock's prefix */ if(H5F__superblock_prefix_decode(&sblock, &image, udata, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, FAIL, "can't decode file superblock prefix") @@ -402,7 +393,7 @@ done: static htri_t H5F__cache_superblock_verify_chksum(const void *_image, size_t len, void *_udata) { - const uint8_t *image = _image; /* Pointer into raw data buffer */ + const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ H5F_superblock_cache_ud_t *udata = (H5F_superblock_cache_ud_t *)_udata; /* User data */ uint32_t stored_chksum; /* Stored metadata checksum value */ uint32_t computed_chksum; /* Computed metadata checksum value */ @@ -448,7 +439,7 @@ H5F__cache_superblock_deserialize(const void *_image, size_t len, void *_udata, { H5F_super_t *sblock = NULL; /* File's superblock */ H5F_superblock_cache_ud_t *udata = (H5F_superblock_cache_ud_t *)_udata; /* User data */ - const uint8_t *image = _image; /* Pointer into raw data buffer */ + const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ H5F_super_t *ret_value = NULL; /* Return value */ FUNC_ENTER_STATIC @@ -673,7 +664,7 @@ H5F__cache_superblock_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNU void *_thing) { H5F_super_t *sblock = (H5F_super_t *)_thing; /* Pointer to the object */ - uint8_t *image = _image; /* Pointer into raw data buffer */ + uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */ haddr_t rel_eof; /* Relative EOF for file */ herr_t ret_value = SUCCEED; /* Return value */ @@ -879,7 +870,7 @@ static herr_t H5F__cache_drvrinfo_get_final_load_size(const void *_image, size_t image_len, void *_udata, size_t *actual_len) { - const uint8_t *image = _image; /* Pointer into raw data buffer */ + const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ H5F_drvrinfo_cache_ud_t *udata = (H5F_drvrinfo_cache_ud_t *)_udata; /* User data */ H5O_drvinfo_t drvrinfo; /* Driver info */ herr_t ret_value = SUCCEED; /* Return value */ @@ -893,7 +884,6 @@ H5F__cache_drvrinfo_get_final_load_size(const void *_image, size_t image_len, HDassert(*actual_len == image_len); HDassert(image_len == H5F_DRVINFOBLOCK_HDR_SIZE); - drvrinfo.len = 0; /* Deserialize the file driver info's prefix */ if(H5F__drvrinfo_prefix_decode(&drvrinfo, NULL, &image, udata, TRUE) < 0) HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, FAIL, "can't decode file driver info prefix") @@ -926,7 +916,7 @@ H5F__cache_drvrinfo_deserialize(const void *_image, size_t len, void *_udata, { H5O_drvinfo_t *drvinfo = NULL; /* Driver info */ H5F_drvrinfo_cache_ud_t *udata = (H5F_drvrinfo_cache_ud_t *)_udata; /* User data */ - const uint8_t *image = _image; /* Pointer into raw data buffer */ + const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */ char drv_name[9]; /* Name of driver */ H5O_drvinfo_t *ret_value = NULL; /* Return value */ @@ -1020,7 +1010,7 @@ H5F__cache_drvrinfo_serialize(const H5F_t *f, void *_image, size_t len, void *_thing) { H5O_drvinfo_t *drvinfo = (H5O_drvinfo_t *)_thing; /* Pointer to the object */ - uint8_t *image = _image; /* Pointer into raw data buffer */ + uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */ uint8_t *dbuf; /* Pointer to beginning of driver info */ herr_t ret_value = SUCCEED; /* Return value */ diff --git a/src/H5HFcache.c b/src/H5HFcache.c index ab448ef..2d1c1f2 100644 --- a/src/H5HFcache.c +++ b/src/H5HFcache.c @@ -406,7 +406,7 @@ static herr_t H5HF__cache_hdr_get_final_load_size(const void *_image, size_t image_len, void *_udata, size_t *actual_len) { - H5HF_hdr_t hdr; /* Temporary fractal heap header */ + H5HF_hdr_t hdr; /* Temporary fractal heap header */ const uint8_t *image = (const uint8_t *)_image; /* Pointer into into supplied image */ H5HF_hdr_cache_ud_t *udata = (H5HF_hdr_cache_ud_t *)_udata; /* User data for callback */ herr_t ret_value = SUCCEED; /* Return value */ @@ -419,12 +419,6 @@ H5HF__cache_hdr_get_final_load_size(const void *_image, size_t image_len, HDassert(actual_len); HDassert(*actual_len == image_len); - /* Initialize because GCC 5.5 does not realize that the - * H5HF__hdr_prefix_decode() call is sufficient to initialize. - * GCC 8 is clever enough to see that the variable is initialized. - * TBD condition on compiler version. - */ - hdr.filter_len = 0; /* Deserialize the fractal heap header's prefix */ if(H5HF__hdr_prefix_decode(&hdr, &image) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTDECODE, FAIL, "can't decode fractal heap header prefix") diff --git a/src/H5HFtiny.c b/src/H5HFtiny.c index 79d790b..0c27180 100644 --- a/src/H5HFtiny.c +++ b/src/H5HFtiny.c @@ -377,7 +377,7 @@ done: herr_t H5HF_tiny_remove(H5HF_hdr_t *hdr, const uint8_t *id) { - size_t enc_obj_size = 0; /* Encoded object size */ + size_t enc_obj_size; /* Encoded object size */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT diff --git a/src/H5HGcache.c b/src/H5HGcache.c index 9f6e73f..29e88df 100644 --- a/src/H5HGcache.c +++ b/src/H5HGcache.c @@ -205,7 +205,7 @@ static herr_t H5HG__cache_heap_get_final_load_size(const void *image, size_t image_len, void *udata, size_t *actual_len) { - H5HG_heap_t heap; /* Global heap */ + H5HG_heap_t heap; /* Global heap */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_STATIC @@ -217,12 +217,6 @@ H5HG__cache_heap_get_final_load_size(const void *image, size_t image_len, HDassert(*actual_len == image_len); HDassert(image_len == H5HG_MINSIZE); - /* Initialize because GCC 5.5 cannot see that - * H5HG__hdr_deserialize() initializes. - * - * TBD condition on compiler version. - */ - heap.size = 0; /* Deserialize the heap's header */ if(H5HG__hdr_deserialize(&heap, (const uint8_t *)image, (const H5F_t *)udata) < 0) HGOTO_ERROR(H5E_HEAP, H5E_CANTDECODE, FAIL, "can't decode global heap prefix") @@ -2270,7 +2270,14 @@ H5Iget_file_id(hid_t obj_id) /* Call internal function */ if (H5I_FILE == type || H5I_DATATYPE == type || H5I_GROUP == type || H5I_DATASET == type || H5I_ATTR == type) { - if ((ret_value = H5F_get_file_id(obj_id, type, TRUE)) < 0) + H5VL_object_t *vol_obj = NULL; /* Object token of obj_id */ + + /* Get the VOL object */ + if(NULL == (vol_obj = H5VL_vol_object(obj_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") + + /* Get the file ID */ + if ((ret_value = H5F_get_file_id(vol_obj, type, TRUE)) < 0) HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, H5I_INVALID_HID, "can't retrieve file ID") } /* end if */ else @@ -278,7 +278,7 @@ H5Oopen_by_addr(hid_t loc_id, haddr_t addr) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") /* Get the file for the object */ - if((file_id = H5F_get_file_id(loc_id, vol_obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, vol_obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a file or file object") /* Retrieve VOL object */ diff --git a/src/H5Ocopy_ref.c b/src/H5Ocopy_ref.c index d8efeb5..20b8454 100644 --- a/src/H5Ocopy_ref.c +++ b/src/H5Ocopy_ref.c @@ -24,7 +24,6 @@ /****************/ #include "H5Omodule.h" /* This source code file is part of the H5O module */ -#define H5F_FRIEND /* Suppress error about including H5Fpkg */ #define H5R_FRIEND /* Suppress error about including H5Rpkg */ @@ -32,7 +31,7 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5Fpkg.h" /* File */ +#include "H5Fprivate.h" /* File */ #include "H5Iprivate.h" /* IDs */ #include "H5Lprivate.h" /* Links */ #include "H5MMprivate.h" /* Memory management */ @@ -359,7 +358,7 @@ H5O__copy_expand_ref_object2(H5O_loc_t *src_oloc, hid_t tid_src, H5T_t *dt_src, HGOTO_ERROR(H5E_OHDR, H5E_CANTCONVERT, FAIL, "datatype conversion failed") /* Retrieve loc ID */ - if((dst_loc_id = H5F__get_file_id(dst_oloc->file, FALSE)) < 0) + if((dst_loc_id = H5F_get_id(dst_oloc->file)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Making equivalent references in the destination file */ diff --git a/src/H5Oint.c b/src/H5Oint.c index 0029976..b97ff30 100644 --- a/src/H5Oint.c +++ b/src/H5Oint.c @@ -31,7 +31,6 @@ /* Headers */ /***********/ #include "H5private.h" /* Generic Functions */ -#include "H5CXprivate.h" /* API contexts */ #include "H5Eprivate.h" /* Error handling */ #include "H5Fprivate.h" /* File access */ #include "H5FLprivate.h" /* Free lists */ diff --git a/src/H5Pmapl.c b/src/H5Pmapl.c index 59da91a..fe5be0f 100644 --- a/src/H5Pmapl.c +++ b/src/H5Pmapl.c @@ -138,7 +138,6 @@ done: } /* end H5P__macc_reg_prop() */ -#ifdef H5_HAVE_MAP_API /*------------------------------------------------------------------------- * Function: H5Pset_map_iterate_hints * @@ -215,4 +214,4 @@ H5Pget_map_iterate_hints(hid_t mapl_id, size_t *key_prefetch_size, size_t *key_a done: FUNC_LEAVE_API(ret_value) } /* end H5Pget_map_iterate_hints() */ -#endif /* H5_HAVE_MAP_API */ + @@ -103,7 +103,7 @@ H5Rcreate_object(hid_t loc_id, const char *name, H5R_ref_t *ref_ptr) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Get the file for the object */ - if((file_id = H5F_get_file_id(loc_id, obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Retrieve VOL file object */ @@ -186,7 +186,7 @@ H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Get the file for the object */ - if((file_id = H5F_get_file_id(loc_id, obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Retrieve VOL file object */ @@ -265,7 +265,7 @@ H5Rcreate_attr(hid_t loc_id, const char *name, const char *attr_name, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Get the file for the object */ - if((file_id = H5F_get_file_id(loc_id, obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Retrieve VOL file object */ diff --git a/src/H5Rdeprec.c b/src/H5Rdeprec.c index b9bdffa..0636da9 100644 --- a/src/H5Rdeprec.c +++ b/src/H5Rdeprec.c @@ -123,7 +123,7 @@ H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *ref) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5G_UNKNOWN, "invalid location identifier") /* Get object token */ - if(H5R__decode_token_compat(id, vol_obj_type, ref_type, buf, &obj_token) < 0) + if(H5R__decode_token_compat(vol_obj, vol_obj_type, ref_type, buf, &obj_token) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, H5G_UNKNOWN, "unable to get object token") /* Set location parameters */ @@ -183,7 +183,7 @@ H5Rdereference1(hid_t obj_id, H5R_type_t ref_type, const void *ref) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") /* Get object token */ - if(H5R__decode_token_compat(obj_id, vol_obj_type, ref_type, buf, &obj_token) < 0) + if(H5R__decode_token_compat(vol_obj, vol_obj_type, ref_type, buf, &obj_token) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, H5I_INVALID_HID, "unable to get object token") /* Set location parameters */ @@ -265,7 +265,7 @@ H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, FAIL, "unable to retrieve object token") /* Get the file for the object */ - if((file_id = H5F_get_file_id(loc_id, vol_obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, vol_obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Retrieve VOL object */ @@ -351,7 +351,7 @@ H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *ref, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid location identifier") /* Get object token */ - if(H5R__decode_token_compat(id, vol_obj_type, ref_type, buf, &obj_token) < 0) + if(H5R__decode_token_compat(vol_obj, vol_obj_type, ref_type, buf, &obj_token) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, FAIL, "unable to get object token") /* Set location parameters */ @@ -415,7 +415,7 @@ H5Rdereference2(hid_t obj_id, hid_t oapl_id, H5R_type_t ref_type, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") /* Get object token */ - if(H5R__decode_token_compat(obj_id, vol_obj_type, ref_type, buf, &obj_token) < 0) + if(H5R__decode_token_compat(vol_obj, vol_obj_type, ref_type, buf, &obj_token) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, H5I_INVALID_HID, "unable to get object token") /* Set location parameters */ @@ -479,7 +479,7 @@ H5Rget_region(hid_t id, H5R_type_t ref_type, const void *ref) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier") /* Get the file for the object */ - if((file_id = H5F_get_file_id(id, vol_obj_type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, vol_obj_type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not a file or file object") /* Retrieve VOL object */ @@ -548,7 +548,7 @@ H5Rget_name(hid_t id, H5R_type_t ref_type, const void *ref, char *name, HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, (-1), "invalid location identifier") /* Get object token */ - if(H5R__decode_token_compat(id, vol_obj_type, ref_type, buf, &obj_token) < 0) + if(H5R__decode_token_compat(vol_obj, vol_obj_type, ref_type, buf, &obj_token) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDECODE, (-1), "unable to get object token") /* Set location parameters */ diff --git a/src/H5Rint.c b/src/H5Rint.c index 9fbc7ef..558c095 100644 --- a/src/H5Rint.c +++ b/src/H5Rint.c @@ -413,6 +413,7 @@ H5R__destroy(H5R_ref_priv_t *ref) break; case H5R_OBJECT1: case H5R_DATASET_REGION1: + break; case H5R_BADTYPE: case H5R_MAXTYPE: HDassert("invalid reference type" && 0); @@ -423,7 +424,7 @@ H5R__destroy(H5R_ref_priv_t *ref) } /* end switch */ /* Decrement refcount of attached loc_id */ - if((ref->loc_id != H5I_INVALID_HID) && (H5I_dec_ref(ref->loc_id) < 0)) + if(ref->type && (ref->loc_id != H5I_INVALID_HID) && (H5I_dec_ref(ref->loc_id) < 0)) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTDEC, FAIL, "decrementing location ID failed") done: @@ -1169,8 +1170,8 @@ H5R__encode_region(H5S_t *space, unsigned char *buf, size_t *nalloc) /* Don't encode if buffer size isn't big enough or buffer is empty */ if(buf && *nalloc >= ((size_t)buf_size + 2 * H5_SIZEOF_UINT32_T)) { - int rank; p = (uint8_t *)buf; + int rank; /* Encode the size for safety check */ UINT32ENCODE(p, (uint32_t)buf_size); @@ -1479,18 +1480,18 @@ done: *------------------------------------------------------------------------- */ herr_t -H5R__decode_token_compat(hid_t id, H5I_type_t type, H5R_type_t ref_type, +H5R__decode_token_compat(H5VL_object_t *vol_obj, H5I_type_t type, H5R_type_t ref_type, const unsigned char *buf, H5VL_token_t *obj_token) { hid_t file_id = H5I_INVALID_HID; /* File ID for region reference */ - void *vol_obj_file = NULL; + H5VL_object_t *vol_obj_file = NULL; H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0}; herr_t ret_value = SUCCEED; FUNC_ENTER_PACKAGE /* Get the file for the object */ - if((file_id = H5F_get_file_id(id, type, FALSE)) < 0) + if((file_id = H5F_get_file_id(vol_obj, type, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Retrieve VOL object */ diff --git a/src/H5Rpkg.h b/src/H5Rpkg.h index 19f3115..7471487 100644 --- a/src/H5Rpkg.h +++ b/src/H5Rpkg.h @@ -118,7 +118,7 @@ H5_DLL herr_t H5R__encode_heap(H5F_t *f, unsigned char *buf, size_t *nalloc, c H5_DLL herr_t H5R__decode_heap(H5F_t *f, const unsigned char *buf, size_t *nbytes, unsigned char **data_ptr, size_t *data_size); H5_DLL herr_t H5R__free_heap(H5F_t *f, const unsigned char *buf, size_t nbytes); -H5_DLL herr_t H5R__decode_token_compat(hid_t id, H5I_type_t type, H5R_type_t ref_type, const unsigned char *buf, H5VL_token_t *obj_token); +H5_DLL herr_t H5R__decode_token_compat(H5VL_object_t *vol_obj, H5I_type_t type, H5R_type_t ref_type, const unsigned char *buf, H5VL_token_t *obj_token); H5_DLL herr_t H5R__encode_token_obj_compat(const H5VL_token_t *obj_token, size_t token_size, unsigned char *buf, size_t *nalloc); H5_DLL herr_t H5R__decode_token_obj_compat(const unsigned char *buf, size_t *nbytes, H5VL_token_t *obj_token, size_t token_size); diff --git a/src/H5Rpublic.h b/src/H5Rpublic.h index 045e04a..ce54ac4 100644 --- a/src/H5Rpublic.h +++ b/src/H5Rpublic.h @@ -70,18 +70,14 @@ typedef haddr_t hobj_ref_t; * machine (8 bytes currently) plus an int. * Note! This type can only be used with the "native" HDF5 VOL connector. */ -typedef struct { - unsigned char content[H5R_DSET_REG_REF_BUF_SIZE]; -} hdset_reg_ref_t; +typedef unsigned char hdset_reg_ref_t[H5R_DSET_REG_REF_BUF_SIZE]; /** * Opaque reference type. The same reference type is used for object, * dataset region and attribute references. This is the type that * should always be used with the current reference API. */ -typedef struct { - unsigned char content[H5R_REF_BUF_SIZE]; -} H5R_ref_t; +typedef unsigned char H5R_ref_t[H5R_REF_BUF_SIZE]; /********************/ /* Public Variables */ @@ -1394,7 +1394,7 @@ H5SL_search(H5SL_t *slist, const void *key) { H5SL_node_t *x; /* Current node to examine */ uint32_t hashval = 0; /* Hash value for key */ - void *ret_value = NULL; /* Return value */ + void *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -1695,7 +1695,7 @@ H5SL_find(H5SL_t *slist, const void *key) { H5SL_node_t *x; /* Current node to examine */ uint32_t hashval = 0; /* Hash value for key */ - H5SL_node_t *ret_value = NULL; /* Return value */ + H5SL_node_t *ret_value; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -313,7 +313,7 @@ ssize_t H5SM_get_index(const H5SM_master_table_t *table, unsigned type_id) { size_t x; - unsigned type_flag = 0; + unsigned type_flag; ssize_t ret_value = FAIL; FUNC_ENTER_NOAPI_NOINIT @@ -353,7 +353,7 @@ htri_t H5SM_type_shared(H5F_t *f, unsigned type_id) { H5SM_master_table_t *table = NULL; /* Shared object master table */ - unsigned type_flag = 0; /* Flag corresponding to message type */ + unsigned type_flag; /* Flag corresponding to message type */ size_t u; /* Local index variable */ htri_t ret_value = FALSE; /* Return value */ diff --git a/src/H5Sall.c b/src/H5Sall.c index 9d0a65a..4a4245d 100644 --- a/src/H5Sall.c +++ b/src/H5Sall.c @@ -66,6 +66,7 @@ static htri_t H5S__all_shape_same(const H5S_t *space1, const H5S_t *space2); static htri_t H5S__all_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__all_adjust_u(H5S_t *space, const hsize_t *offset); +static herr_t H5S__all_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__all_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__all_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__all_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); @@ -112,6 +113,7 @@ const H5S_select_class_t H5S_sel_all[1] = {{ H5S__all_shape_same, H5S__all_intersect_block, H5S__all_adjust_u, + H5S__all_adjust_s, H5S__all_project_scalar, H5S__all_project_simple, H5S__all_iter_init, @@ -1043,6 +1045,37 @@ H5S__all_adjust_u(H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *off } /* end H5S__all_adjust_u() */ +/*-------------------------------------------------------------------------- + NAME + H5S__all_adjust_s + PURPOSE + Adjust an "all" selection by subtracting an offset + USAGE + herr_t H5S__all_adjust_u(space, offset) + H5S_t *space; IN/OUT: Pointer to dataspace to adjust + const hssize_t *offset; IN: Offset to subtract + RETURNS + Non-negative on success, negative on failure + DESCRIPTION + Moves selection by subtracting an offset from it. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S__all_adjust_s(H5S_t H5_ATTR_UNUSED *space, const hssize_t H5_ATTR_UNUSED *offset) +{ + FUNC_ENTER_STATIC_NOERR + + /* Check args */ + HDassert(space); + HDassert(offset); + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5S__all_adjust_s() */ + + /*------------------------------------------------------------------------- * Function: H5S__all_project_scalar * diff --git a/src/H5Shyper.c b/src/H5Shyper.c index 2c7502a..ab06eff 100644 --- a/src/H5Shyper.c +++ b/src/H5Shyper.c @@ -194,6 +194,7 @@ static htri_t H5S__hyper_shape_same(const H5S_t *space1, const H5S_t *space2); static htri_t H5S__hyper_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset); +static herr_t H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__hyper_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__hyper_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__hyper_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); @@ -240,6 +241,7 @@ const H5S_select_class_t H5S_sel_hyper[1] = {{ H5S__hyper_shape_same, H5S__hyper_intersect_block, H5S__hyper_adjust_u, + H5S__hyper_adjust_s, H5S__hyper_project_scalar, H5S__hyper_project_simple, H5S__hyper_iter_init, @@ -6475,39 +6477,50 @@ H5S__hyper_adjust_u_helper(H5S_hyper_span_info_t *spans, unsigned rank, static herr_t H5S__hyper_adjust_u(H5S_t *space, const hsize_t *offset) { + hbool_t non_zero_offset = FALSE; /* Whether any offset is non-zero */ + unsigned u; /* Local index variable */ + FUNC_ENTER_STATIC_NOERR /* Sanity check */ HDassert(space); HDassert(offset); - /* Subtract the offset from the "regular" coordinates, if they exist */ - /* (No need to rebuild the dimension info yet -QAK) */ - if(space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) { - unsigned u; /* Local index variable */ + /* Check for an all-zero offset vector */ + for(u = 0; u < space->extent.rank; u++) + if(0 != offset[u]) { + non_zero_offset = TRUE; + break; + } /* end if */ - for(u = 0; u < space->extent.rank; u++) { - HDassert(space->select.sel_info.hslab->diminfo.opt[u].start >= offset[u]); - space->select.sel_info.hslab->diminfo.opt[u].start -= offset[u]; + /* Only perform operation if the offset is non-zero */ + if(non_zero_offset) { + /* Subtract the offset from the "regular" coordinates, if they exist */ + /* (No need to rebuild the dimension info yet -QAK) */ + if(space->select.sel_info.hslab->diminfo_valid == H5S_DIMINFO_VALID_YES) { + for(u = 0; u < space->extent.rank; u++) { + HDassert(space->select.sel_info.hslab->diminfo.opt[u].start >= offset[u]); + space->select.sel_info.hslab->diminfo.opt[u].start -= offset[u]; - /* Adjust the low & high bounds */ - HDassert(space->select.sel_info.hslab->diminfo.low_bounds[u] >= offset[u]); - space->select.sel_info.hslab->diminfo.low_bounds[u] -= offset[u]; - space->select.sel_info.hslab->diminfo.high_bounds[u] -= offset[u]; - } /* end for */ - } /* end if */ + /* Adjust the low & high bounds */ + HDassert(space->select.sel_info.hslab->diminfo.low_bounds[u] >= offset[u]); + space->select.sel_info.hslab->diminfo.low_bounds[u] -= offset[u]; + space->select.sel_info.hslab->diminfo.high_bounds[u] -= offset[u]; + } /* end for */ + } /* end if */ - /* Subtract the offset from the span tree coordinates, if they exist */ - if(space->select.sel_info.hslab->span_lst) { - uint64_t op_gen; /* Operation generation value */ + /* Subtract the offset from the span tree coordinates, if they exist */ + if(space->select.sel_info.hslab->span_lst) { + uint64_t op_gen; /* Operation generation value */ - /* Acquire an operation generation value for this operation */ - op_gen = H5S__hyper_get_op_gen(); + /* Acquire an operation generation value for this operation */ + op_gen = H5S__hyper_get_op_gen(); - /* Perform adjustment */ - /* Always use op_info[0] since we own this op_info, so there can be no - * simultaneous operations */ - H5S__hyper_adjust_u_helper(space->select.sel_info.hslab->span_lst, space->extent.rank, offset, 0, op_gen); + /* Perform adjustment */ + /* Always use op_info[0] since we own this op_info, so there can be no + * simultaneous operations */ + H5S__hyper_adjust_u_helper(space->select.sel_info.hslab->span_lst, space->extent.rank, offset, 0, op_gen); + } /* end if */ } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) @@ -6980,11 +6993,11 @@ H5S__hyper_adjust_s_helper(H5S_hyper_span_info_t *spans, unsigned rank, /*-------------------------------------------------------------------------- NAME - H5S_hyper_adjust_s + H5S__hyper_adjust_s PURPOSE Adjust a hyperslab selection by subtracting an offset USAGE - herr_t H5S_hyper_adjust_s(space,offset) + herr_t H5S__hyper_adjust_s(space,offset) H5S_t *space; IN/OUT: Pointer to dataspace to adjust const hssize_t *offset; IN: Offset to subtract RETURNS @@ -6996,8 +7009,8 @@ H5S__hyper_adjust_s_helper(H5S_hyper_span_info_t *spans, unsigned rank, EXAMPLES REVISION LOG --------------------------------------------------------------------------*/ -herr_t -H5S_hyper_adjust_s(H5S_t *space, const hssize_t *offset) +static herr_t +H5S__hyper_adjust_s(H5S_t *space, const hssize_t *offset) { hbool_t non_zero_offset = FALSE; /* Whether any offset is non-zero */ unsigned u; /* Local index variable */ @@ -7048,48 +7061,7 @@ H5S_hyper_adjust_s(H5S_t *space, const hssize_t *offset) done: FUNC_LEAVE_NOAPI(ret_value) -} /* end H5S_hyper_adjust_s() */ - -/*-------------------------------------------------------------------------- - NAME - H5Shyper_adjust_s - PURPOSE - Adjust a hyperslab selection by subtracting an offset - USAGE - herr_t H5Shyper_adjust_s(space_id,offset) - hid_t space_id; IN: ID of the dataspace to adjust - const hssize_t *offset; IN: Offset to subtract - RETURNS - Non-negative on success, negative on failure - DESCRIPTION - Moves a hyperslab selection by subtracting an offset from it. - GLOBAL VARIABLES - COMMENTS, BUGS, ASSUMPTIONS - EXAMPLES - REVISION LOG ---------------------------------------------------------------------------*/ -herr_t -H5Shyper_adjust_s(hid_t space_id, const hssize_t *offset) -{ - H5S_t *space; - herr_t ret_value = SUCCEED; /* Return value */ - - FUNC_ENTER_API(FAIL) - H5TRACE2("e", "i*Hs", space_id, offset); - - if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "not a dataspace") - if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_HYPERSLABS) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a hyperslab selection") - if(NULL == offset) - HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "NULL offset pointer") - - if(H5S_hyper_adjust_s(space, offset) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't adjust selection") - -done: - FUNC_LEAVE_API(ret_value) -} /* end H5Shyper_adjust_s() */ +} /* end H5S__hyper_adjust_s() */ /*-------------------------------------------------------------------------- @@ -7135,7 +7107,7 @@ H5S_hyper_normalize_offset(H5S_t *space, hssize_t *old_offset) } /* end for */ /* Call the 'adjust' routine */ - if(H5S_hyper_adjust_s(space, space->select.offset) < 0) + if(H5S__hyper_adjust_s(space, space->select.offset) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't adjust selection") /* Zero out the selection offset */ @@ -7183,7 +7155,7 @@ H5S_hyper_denormalize_offset(H5S_t *space, const hssize_t *old_offset) HDassert(H5S_GET_SELECT_TYPE(space) == H5S_SEL_HYPERSLABS); /* Call the 'adjust' routine */ - if(H5S_hyper_adjust_s(space, old_offset) < 0) + if(H5S__hyper_adjust_s(space, old_offset) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't adjust selection") /* Copy the selection offset over */ diff --git a/src/H5Snone.c b/src/H5Snone.c index c262d18..0949b2a 100644 --- a/src/H5Snone.c +++ b/src/H5Snone.c @@ -66,6 +66,7 @@ static htri_t H5S__none_shape_same(const H5S_t *space1, const H5S_t *space2); static htri_t H5S__none_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__none_adjust_u(H5S_t *space, const hsize_t *offset); +static herr_t H5S__none_adjust_s(H5S_t *space, const hssize_t *offset); static herr_t H5S__none_project_scalar(const H5S_t *space, hsize_t *offset); static herr_t H5S__none_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); @@ -113,6 +114,7 @@ const H5S_select_class_t H5S_sel_none[1] = {{ H5S__none_shape_same, H5S__none_intersect_block, H5S__none_adjust_u, + H5S__none_adjust_s, H5S__none_project_scalar, H5S__none_project_simple, H5S__none_iter_init, @@ -954,6 +956,37 @@ H5S__none_adjust_u(H5S_t H5_ATTR_UNUSED *space, const hsize_t H5_ATTR_UNUSED *of } /* end H5S__none_adjust_u() */ +/*-------------------------------------------------------------------------- + NAME + H5S__none_adjust_s + PURPOSE + Adjust an "none" selection by subtracting an offset + USAGE + herr_t H5S__none_adjust_u(space, offset) + H5S_t *space; IN/OUT: Pointer to dataspace to adjust + const hssize_t *offset; IN: Offset to subtract + RETURNS + Non-negative on success, negative on failure + DESCRIPTION + Moves selection by subtracting an offset from it. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S__none_adjust_s(H5S_t H5_ATTR_UNUSED *space, const hssize_t H5_ATTR_UNUSED *offset) +{ + FUNC_ENTER_STATIC_NOERR + + /* Check args */ + HDassert(space); + HDassert(offset); + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5S__none_adjust_s() */ + + /*------------------------------------------------------------------------- * Function: H5S__none_project_scalar * diff --git a/src/H5Spkg.h b/src/H5Spkg.h index 6809643..ba60cbf 100644 --- a/src/H5Spkg.h +++ b/src/H5Spkg.h @@ -261,6 +261,8 @@ typedef htri_t (*H5S_sel_shape_same_func_t)(const H5S_t *space1, const H5S_t *sp typedef htri_t (*H5S_sel_intersect_block_func_t)(const H5S_t *space, const hsize_t *start, const hsize_t *end); /* Method to adjust a selection by an offset */ typedef herr_t (*H5S_sel_adjust_u_func_t)(H5S_t *space, const hsize_t *offset); +/* Method to adjust a selection by an offset (signed) */ +typedef herr_t (*H5S_sel_adjust_s_func_t)(H5S_t *space, const hssize_t *offset); /* Method to construct single element projection onto scalar dataspace */ typedef herr_t (*H5S_sel_project_scalar)(const H5S_t *space, hsize_t *offset); /* Method to construct selection projection onto/into simple dataspace */ @@ -289,6 +291,7 @@ typedef struct { H5S_sel_shape_same_func_t shape_same; /* Method to determine if two dataspaces' selections are the same shape */ H5S_sel_intersect_block_func_t intersect_block; /* Method to determine if a dataspaces' selection intersects a block */ H5S_sel_adjust_u_func_t adjust_u; /* Method to adjust a selection by an offset */ + H5S_sel_adjust_s_func_t adjust_s; /* Method to adjust a selection by an offset (signed) */ H5S_sel_project_scalar project_scalar; /* Method to construct scalar dataspace projection */ H5S_sel_project_simple project_simple; /* Method to construct simple dataspace projection */ H5S_sel_iter_init_func_t iter_init; /* Method to initialize iterator for current selection */ diff --git a/src/H5Spoint.c b/src/H5Spoint.c index ea6c9c5..721211e 100644 --- a/src/H5Spoint.c +++ b/src/H5Spoint.c @@ -78,7 +78,8 @@ static htri_t H5S__point_shape_same(const H5S_t *space1, const H5S_t *space2); static htri_t H5S__point_intersect_block(const H5S_t *space, const hsize_t *start, const hsize_t *end); static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset); -static herr_t H5S__point_project_scalar(const H5S_t *space, hsize_t *offset); +static herr_t H5S__point_adjust_s(H5S_t *space, const hssize_t *offset); +static herr_t H5S__point_project_scalar(const H5S_t *spasce, hsize_t *offset); static herr_t H5S__point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); static herr_t H5S__point_iter_init(const H5S_t *space, H5S_sel_iter_t *iter); @@ -128,6 +129,7 @@ const H5S_select_class_t H5S_sel_point[1] = {{ H5S__point_shape_same, H5S__point_intersect_block, H5S__point_adjust_u, + H5S__point_adjust_s, H5S__point_project_scalar, H5S__point_project_simple, H5S__point_iter_init, @@ -2078,6 +2080,7 @@ done: static herr_t H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) { + hbool_t non_zero_offset = FALSE; /* Whether any offset is non-zero */ H5S_pnt_node_t *node; /* Point node */ unsigned rank; /* Dataspace rank */ unsigned u; /* Local index variable */ @@ -2087,31 +2090,110 @@ H5S__point_adjust_u(H5S_t *space, const hsize_t *offset) HDassert(space); HDassert(offset); - /* Iterate through the nodes, checking the bounds on each element */ - node = space->select.sel_info.pnt_lst->head; - rank = space->extent.rank; - while(node) { - /* Adjust each coordinate for point node */ - for(u = 0; u < rank; u++) { - /* Check for offset moving selection negative */ - HDassert(node->pnt[u] >= offset[u]); + /* Check for an all-zero offset vector */ + for(u = 0; u < space->extent.rank; u++) + if(0 != offset[u]) { + non_zero_offset = TRUE; + break; + } /* end if */ + + /* Only perform operation if the offset is non-zero */ + if(non_zero_offset) { + /* Iterate through the nodes, checking the bounds on each element */ + node = space->select.sel_info.pnt_lst->head; + rank = space->extent.rank; + while(node) { + /* Adjust each coordinate for point node */ + for(u = 0; u < rank; u++) { + /* Check for offset moving selection negative */ + HDassert(node->pnt[u] >= offset[u]); + + /* Adjust node's coordinate location */ + node->pnt[u] -= offset[u]; + } /* end for */ + + /* Advance to next point node in selection */ + node = node->next; + } /* end while */ - /* Adjust node's coordinate location */ - node->pnt[u] -= offset[u]; + /* update the bound box of the selection */ + for(u = 0; u < rank; u++) { + space->select.sel_info.pnt_lst->low_bounds[u] -= offset[u]; + space->select.sel_info.pnt_lst->high_bounds[u] -= offset[u]; } /* end for */ + } /* end if */ - /* Advance to next point node in selection */ - node = node->next; - } /* end while */ + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5S__point_adjust_u() */ - /* update the bound box of the selection */ - for(u = 0; u < rank; u++) { - space->select.sel_info.pnt_lst->low_bounds[u] -= offset[u]; - space->select.sel_info.pnt_lst->high_bounds[u] -= offset[u]; - } /* end for */ + +/*-------------------------------------------------------------------------- + NAME + H5S__point_adjust_s + PURPOSE + Adjust a "point" selection by subtracting an offset + USAGE + herr_t H5S__point_adjust_u(space, offset) + H5S_t *space; IN/OUT: Pointer to dataspace to adjust + const hssize_t *offset; IN: Offset to subtract + RETURNS + Non-negative on success, negative on failure + DESCRIPTION + Moves a point selection by subtracting an offset from it. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +static herr_t +H5S__point_adjust_s(H5S_t *space, const hssize_t *offset) +{ + hbool_t non_zero_offset = FALSE; /* Whether any offset is non-zero */ + H5S_pnt_node_t *node; /* Point node */ + unsigned rank; /* Dataspace rank */ + unsigned u; /* Local index variable */ + + FUNC_ENTER_STATIC_NOERR + + HDassert(space); + HDassert(offset); + + /* Check for an all-zero offset vector */ + for(u = 0; u < space->extent.rank; u++) + if(0 != offset[u]) { + non_zero_offset = TRUE; + break; + } /* end if */ + + /* Only perform operation if the offset is non-zero */ + if(non_zero_offset) { + /* Iterate through the nodes, checking the bounds on each element */ + node = space->select.sel_info.pnt_lst->head; + rank = space->extent.rank; + while(node) { + /* Adjust each coordinate for point node */ + for(u = 0; u < rank; u++) { + /* Check for offset moving selection negative */ + HDassert((hssize_t)node->pnt[u] >= offset[u]); + + /* Adjust node's coordinate location */ + node->pnt[u] = (hsize_t)((hssize_t)node->pnt[u] - offset[u]); + } /* end for */ + + /* Advance to next point node in selection */ + node = node->next; + } /* end while */ + + /* update the bound box of the selection */ + for(u = 0; u < rank; u++) { + HDassert((hssize_t)space->select.sel_info.pnt_lst->low_bounds[u] >= offset[u]); + space->select.sel_info.pnt_lst->low_bounds[u] = (hsize_t)((hssize_t)space->select.sel_info.pnt_lst->low_bounds[u] - offset[u]); + space->select.sel_info.pnt_lst->high_bounds[u] = (hsize_t)((hssize_t)space->select.sel_info.pnt_lst->high_bounds[u] - offset[u]); + } /* end for */ + } /* end if */ FUNC_LEAVE_NOAPI(SUCCEED) -} /* end H5S__point_adjust_u() */ +} /* end H5S__point_adjust_s() */ /*------------------------------------------------------------------------- diff --git a/src/H5Sprivate.h b/src/H5Sprivate.h index 41c8b95..f29319f 100644 --- a/src/H5Sprivate.h +++ b/src/H5Sprivate.h @@ -145,6 +145,7 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_IS_SINGLE(S) ((*(S)->select.type->is_single)(S)) #define H5S_SELECT_IS_REGULAR(S) ((*(S)->select.type->is_regular)(S)) #define H5S_SELECT_ADJUST_U(S,O) ((*(S)->select.type->adjust_u)(S, O)) +#define H5S_SELECT_ADJUST_S(S,O) ((*(S)->select.type->adjust_s)(S, O)) #define H5S_SELECT_PROJECT_SCALAR(S,O) ((*(S)->select.type->project_scalar)(S, O)) #define H5S_SELECT_PROJECT_SIMPLE(S,NS, O) ((*(S)->select.type->project_simple)(S, NS, O)) #define H5S_SELECT_ITER_COORDS(ITER,COORDS) ((*(ITER)->type->iter_coords)(ITER,COORDS)) @@ -170,6 +171,7 @@ typedef struct H5S_sel_iter_op_t { #define H5S_SELECT_IS_SINGLE(S) (H5S_select_is_single(S)) #define H5S_SELECT_IS_REGULAR(S) (H5S_select_is_regular(S)) #define H5S_SELECT_ADJUST_U(S,O) (H5S_select_adjust_u(S, O)) +#define H5S_SELECT_ADJUST_S(S,O) (H5S_select_adjust_s(S, O)) #define H5S_SELECT_PROJECT_SCALAR(S,O) (H5S_select_project_scalar(S, O)) #define H5S_SELECT_PROJECT_SIMPLE(S,NS,O) (H5S_select_project_simple(S, NS, O)) #define H5S_SELECT_ITER_COORDS(ITER,COORDS) (H5S_select_iter_coords(ITER,COORDS)) @@ -257,6 +259,7 @@ H5_DLL htri_t H5S_select_is_contiguous(const H5S_t *space); H5_DLL htri_t H5S_select_is_single(const H5S_t *space); H5_DLL htri_t H5S_select_is_regular(const H5S_t *space); H5_DLL herr_t H5S_select_adjust_u(H5S_t *space, const hsize_t *offset); +H5_DLL herr_t H5S_select_adjust_s(H5S_t *space, const hssize_t *offset); H5_DLL herr_t H5S_select_project_scalar(const H5S_t *space, hsize_t *offset); H5_DLL herr_t H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset); H5_DLL herr_t H5S_select_project_intersection(const H5S_t *src_space, @@ -282,7 +285,6 @@ H5_DLL herr_t H5S_combine_hyperslab(H5S_t *old_space, H5S_seloper_t op, const hsize_t *block, H5S_t **new_space); H5_DLL herr_t H5S_hyper_add_span_element(H5S_t *space, unsigned rank, const hsize_t *coords); -H5_DLL herr_t H5S_hyper_adjust_s(H5S_t *space, const hssize_t *offset); H5_DLL htri_t H5S_hyper_normalize_offset(H5S_t *space, hssize_t *old_offset); H5_DLL herr_t H5S_hyper_denormalize_offset(H5S_t *space, const hssize_t *old_offset); H5_DLL herr_t H5S_hyper_clip_unlim(H5S_t *space, hsize_t clip_size); diff --git a/src/H5Spublic.h b/src/H5Spublic.h index 263a880..f7c5ae7 100644 --- a/src/H5Spublic.h +++ b/src/H5Spublic.h @@ -143,7 +143,7 @@ H5_DLL H5S_sel_type H5Sget_select_type(hid_t spaceid); H5_DLL hssize_t H5Sget_select_npoints(hid_t spaceid); H5_DLL herr_t H5Sselect_copy(hid_t dst_id, hid_t src_id); H5_DLL htri_t H5Sselect_valid(hid_t spaceid); -H5_DLL herr_t H5Sselect_adjust_u(hid_t spaceid, const hsize_t *offset); +H5_DLL herr_t H5Sselect_adjust(hid_t spaceid, const hssize_t *offset); H5_DLL herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[]); H5_DLL htri_t H5Sselect_shape_same(hid_t space1_id, hid_t space2_id); @@ -171,7 +171,6 @@ H5_DLL htri_t H5Sget_regular_hyperslab(hid_t spaceid, hsize_t start[], H5_DLL hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid); H5_DLL herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, hsize_t numblocks, hsize_t buf[/*numblocks*/]); -H5_DLL herr_t H5Shyper_adjust_s(hid_t space_id, const hssize_t *offset); H5_DLL hid_t H5Sselect_project_intersection(hid_t src_space_id, hid_t dst_space_id, hid_t src_intersect_space_id); diff --git a/src/H5Sselect.c b/src/H5Sselect.c index c506218..664f4b5 100644 --- a/src/H5Sselect.c +++ b/src/H5Sselect.c @@ -947,8 +947,6 @@ H5S_select_is_regular(const H5S_t *space) herr_t H5S_select_adjust_u(H5S_t *space, const hsize_t *offset) { - hbool_t non_zero_offset = FALSE; /* Whether any offset is non-zero */ - unsigned u; /* Local index variable */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI_NOINIT_NOERR @@ -957,23 +955,55 @@ H5S_select_adjust_u(H5S_t *space, const hsize_t *offset) HDassert(space); HDassert(offset); - /* Check for an all-zero offset vector */ - for(u = 0; u < space->extent.rank; u++) - if(0 != offset[u]) { - non_zero_offset = TRUE; - break; - } /* end if */ - - /* Only perform operation if the offset is non-zero */ - if(non_zero_offset) - ret_value = (*space->select.type->adjust_u)(space, offset); + /* Perform operation */ + ret_value = (*space->select.type->adjust_u)(space, offset); FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_adjust_u() */ + /*-------------------------------------------------------------------------- NAME - H5Sselect_adjust_u + H5S_select_adjust_s + PURPOSE + Adjust a selection by subtracting an offset + USAGE + herr_t H5S_select_adjust_u(space, offset) + H5S_t *space; IN/OUT: Pointer to dataspace to adjust + const hssize_t *offset; IN: Offset to subtract + RETURNS + Non-negative on success, negative on failure + DESCRIPTION + Moves a selection by subtracting an offset from it. + GLOBAL VARIABLES + COMMENTS, BUGS, ASSUMPTIONS + This routine participates in the "Inlining C function pointers" + pattern, don't call it directly, use the appropriate macro + defined in H5Sprivate.h. + EXAMPLES + REVISION LOG +--------------------------------------------------------------------------*/ +herr_t +H5S_select_adjust_s(H5S_t *space, const hssize_t *offset) +{ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Check args */ + HDassert(space); + HDassert(offset); + + /* Perform operation */ + ret_value = (*space->select.type->adjust_s)(space, offset); + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5S_select_adjust_s() */ + + +/*-------------------------------------------------------------------------- + NAME + H5Sselect_adjust PURPOSE Adjust a selection by subtracting an offset USAGE @@ -990,25 +1020,35 @@ H5S_select_adjust_u(H5S_t *space, const hsize_t *offset) REVISION LOG --------------------------------------------------------------------------*/ herr_t -H5Sselect_adjust_u(hid_t space_id, const hsize_t *offset) +H5Sselect_adjust(hid_t space_id, const hssize_t *offset) { H5S_t *space; + hsize_t low_bounds[H5S_MAX_RANK]; + hsize_t high_bounds[H5S_MAX_RANK]; + unsigned u; herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API(FAIL) - H5TRACE2("e", "i*h", space_id, offset); + H5TRACE2("e", "i*Hs", space_id, offset); if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "not a dataspace") if(NULL == offset) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "NULL offset pointer") - if(H5S_select_adjust_u(space, offset) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't adjust selection"); + /* Check bounds */ + if(H5S_SELECT_BOUNDS(space, low_bounds, high_bounds) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get selection bounds") + for(u = 0; u < space->extent.rank; u++) + if(offset[u] > (hssize_t)low_bounds[u]) + HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "adjustment would move selection below zero offset") + + if(H5S_select_adjust_s(space, offset) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "can't adjust selection") done: FUNC_LEAVE_API(ret_value) -} /* end H5Sselect_adjust_u() */ +} /* end H5Sselect_adjust() */ /*-------------------------------------------------------------------------- @@ -2559,7 +2599,12 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, const H5S_t *src_intersect_space, H5S_t **new_space_ptr, hbool_t share_selection) { - H5S_t *new_space = NULL; /* New dataspace constructed */ + H5S_t *new_space = NULL; /* New dataspace constructed */ + H5S_t *tmp_src_intersect_space = NULL; /* Temporary SIS converted from points->hyperslabs */ + H5S_sel_iter_t ss_iter; /* Selection iterator for src_space */ + hbool_t ss_iter_init = FALSE; /* Whether ss_iter has been initialized */ + H5S_sel_iter_t ds_iter; /* Selection iterator for dst_space */ + hbool_t ds_iter_init = FALSE; /* Whether ds_iter has been initialized */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_NOAPI(FAIL) @@ -2569,6 +2614,7 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, HDassert(dst_space); HDassert(src_intersect_space); HDassert(new_space_ptr); + HDassert(H5S_GET_SELECT_NPOINTS(src_space) == H5S_GET_SELECT_NPOINTS(dst_space)); /* Create new space, using dst extent. Start with "all" selection. */ if(NULL == (new_space = H5S_create(H5S_SIMPLE))) @@ -2578,7 +2624,7 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, /* If the intersecting space is "all", the intersection must be equal to the * source space and the projection must be equal to the destination space */ - if(src_intersect_space->select.type->type == H5S_SEL_ALL) { + if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_ALL) { /* Copy the destination selection. */ if(H5S_select_copy(new_space, dst_space, FALSE) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy destination space selection") @@ -2592,20 +2638,99 @@ H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space, if(H5S_select_none(new_space) < 0) HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") } /* end if */ - /* If any of the spaces use point selection, fall back to general algorithm */ - else if((src_intersect_space->select.type->type == H5S_SEL_POINTS) - || (src_space->select.type->type == H5S_SEL_POINTS) - || (dst_space->select.type->type == H5S_SEL_POINTS)) - HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "point selections not currently supported") else { - HDassert(src_intersect_space->select.type->type == H5S_SEL_HYPERSLABS); - HDassert(src_space->select.type->type != H5S_SEL_NONE); - HDassert(dst_space->select.type->type != H5S_SEL_NONE); - - /* Intersecting space is hyperslab selection. Call the hyperslab - * routine to project to another hyperslab selection. */ - if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0) - HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection") + /* If the source intersect space is a point selection, convert it to a + * hyperslab (discarding ordering). We can get away with this because + * the order does not matter for the source intersect space */ + /* Maybe we should just leave it as a point selection for the point by + * point algorithm? The search through the selection in + * H5S_SELECT_INTERSECT_BLOCK will likely be O(N) either way. -NAF */ + if(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_POINTS) { + H5S_pnt_node_t *curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; + + /* Create dataspace and copy extent */ + if(NULL == (tmp_src_intersect_space = H5S_create(H5S_SIMPLE))) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create temporary source intersect dataspace") + if(H5S__extent_copy_real(&tmp_src_intersect_space->extent, &src_intersect_space->extent, FALSE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy source intersect space extent") + + /* Iterate over points */ + for(curr_pnt = src_intersect_space->select.sel_info.pnt_lst->head; curr_pnt; curr_pnt = curr_pnt->next) + /* Add point to hyperslab selection */ + if(H5S_hyper_add_span_element(tmp_src_intersect_space, src_intersect_space->extent.rank, curr_pnt->pnt) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to temporary dataspace selection") + + /* Redirect local src_intersect_space pointer (will not affect + * calling function) */ + src_intersect_space = tmp_src_intersect_space; + } /* end for */ + + /* By this point, src_intersect_space must be a hyperslab selection */ + HDassert(H5S_GET_SELECT_TYPE(src_intersect_space) == H5S_SEL_HYPERSLABS); + + /* If either the source space or the destination space is a point + * selection, iterate element by element */ + if((H5S_GET_SELECT_TYPE(src_space) == H5S_SEL_POINTS) + || (H5S_GET_SELECT_TYPE(dst_space) == H5S_SEL_POINTS)) { + hsize_t coords[H5S_MAX_RANK]; + htri_t intersect; + + /* Start with "none" selection */ + if(H5S_select_none(new_space) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection") + + /* Initialize iterators */ + if(H5S_select_iter_init(&ss_iter, src_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize source space selection iterator") + ss_iter_init = TRUE; + if(H5S_select_iter_init(&ds_iter, dst_space, 1, H5S_SEL_ITER_SHARE_WITH_DATASPACE) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't initialize destination space selection iterator") + ds_iter_init = TRUE; + + /* Iterate over points */ + do { + HDassert(ss_iter.elmt_left > 0); + HDassert(ss_iter.elmt_left > 0); + + /* Get SS coords */ + if(H5S_SELECT_ITER_COORDS(&ss_iter, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get source selection coordinates") + + /* Check for intersection */ + if((intersect = H5S_SELECT_INTERSECT_BLOCK(src_intersect_space, coords, coords)) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOMPARE, FAIL, "can't check for intersection") + + /* Add point if it intersects */ + if(intersect) { + /* Get DS coords */ + if(H5S_SELECT_ITER_COORDS(&ds_iter, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "can't get destination selection coordinates") + + /* Add point to new_space */ + if(H5S_select_elements(new_space, H5S_SELECT_APPEND, 1, coords) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSELECT, FAIL, "can't add point to new selection") + } /* end if */ + + /* Advance iterators */ + if(H5S_SELECT_ITER_NEXT(&ss_iter, 1) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne source selection iterator") + ss_iter.elmt_left--; + if(H5S_SELECT_ITER_NEXT(&ds_iter, 1) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "can't advacne destination selection iterator") + ds_iter.elmt_left--; + } while(ss_iter.elmt_left > 0); + HDassert(H5S_SELECT_ITER_NELMTS(&ds_iter) == 0); + } /* end if */ + else { + HDassert(H5S_GET_SELECT_TYPE(src_space) != H5S_SEL_NONE); + HDassert(H5S_GET_SELECT_TYPE(dst_space) != H5S_SEL_NONE); + + /* Source and destination selections are all or hyperslab, + * intersecting selection is hyperslab. Call the hyperslab routine + * to project to another hyperslab selection. */ + if(H5S__hyper_project_intersection(src_space, dst_space, src_intersect_space, new_space, share_selection) < 0) + HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab onto destination selection") + } /* end else */ } /* end else */ /* load the address of the new space into *new_space_ptr */ @@ -2617,6 +2742,14 @@ done: if(new_space && H5S_close(new_space) < 0) HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace") + /* General cleanup */ + if(tmp_src_intersect_space && H5S_close(tmp_src_intersect_space) < 0) + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release temporary dataspace") + if(ss_iter_init && H5S_SELECT_ITER_RELEASE(&ss_iter) < 0) + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release source selection iterator") + if(ds_iter_init && H5S_SELECT_ITER_RELEASE(&ds_iter) < 0) + HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release destination selection iterator") + FUNC_LEAVE_NOAPI(ret_value) } /* end H5S_select_project_intersection() */ @@ -2628,8 +2761,7 @@ done: PURPOSE Projects the intersection of of the selections of src_space_id and src_intersect_space_id within the selection of src_space_id as a - selection within the selection of dst_space_id. Currently does not - support point selections. + selection within the selection of dst_space_id. USAGE hid_t H5Sselect_project_intersection(src_space_id,dst_space_d,src_intersect_space_id) @@ -2672,6 +2804,10 @@ H5Sselect_project_intersection(hid_t src_space_id, hid_t dst_space_id, if(NULL == (src_intersect_space = (H5S_t *)H5I_object_verify(src_intersect_space_id, H5I_DATASPACE))) HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL, "not a dataspace") + /* Check numbbers of points selected matches in source and destination */ + if(H5S_GET_SELECT_NPOINTS(src_space) != H5S_GET_SELECT_NPOINTS(dst_space)) + HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "number of points selected in source space does not match that in destination space") + /* Perform operation */ if(H5S_select_project_intersection(src_space, dst_space, src_intersect_space, &proj_space, FALSE) < 0) @@ -3320,7 +3320,7 @@ done: *------------------------------------------------------------------------- */ H5T_t * -H5T_copy(const H5T_t *old_dt, H5T_copy_t method) +H5T_copy(H5T_t *old_dt, H5T_copy_t method) { H5T_t *new_dt = NULL, *tmp = NULL; H5T_shared_t *reopened_fo = NULL; diff --git a/src/H5Tconv.c b/src/H5Tconv.c index 6aea00e..4cc5f3c 100644 --- a/src/H5Tconv.c +++ b/src/H5Tconv.c @@ -3609,39 +3609,52 @@ H5T__conv_ref(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, for(elmtno = 0; elmtno < safe; elmtno++) { size_t buf_size; hbool_t dst_copy = FALSE; + hbool_t is_nil; /* Whether sequence is "nil" */ - /* Get size of references */ - if(0 == (buf_size = src->shared->u.atomic.u.r.cls->getsize( - src->shared->u.atomic.u.r.file, s, src->shared->size, - dst->shared->u.atomic.u.r.file, &dst_copy))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "incorrect size") - - /* Check if conversion buffer is large enough, resize if necessary. */ - if(conv_buf_size < buf_size) { - conv_buf_size = buf_size; - if(NULL == (conv_buf = H5FL_BLK_REALLOC(ref_seq, conv_buf, conv_buf_size))) - HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion") - HDmemset(conv_buf, 0, conv_buf_size); - } /* end if */ + /* Check for "nil" source sequence */ + if((*(src->shared->u.atomic.u.r.cls->isnull))(src->shared->u.atomic.u.r.file, s, &is_nil) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't check if reference data is 'nil'") - if(dst_copy && (src->shared->u.atomic.u.r.loc == H5T_LOC_DISK)) { - H5MM_memcpy(conv_buf, s, buf_size); - } else { - /* Read reference */ - if(src->shared->u.atomic.u.r.cls->read( + if(is_nil) { + + /* Write "nil" sequence to destination location */ + if((*(dst->shared->u.atomic.u.r.cls->setnull))(dst->shared->u.atomic.u.r.file, d, b) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_WRITEERROR, FAIL, "can't set reference data to 'nil'") + } /* end else-if */ + else { + /* Get size of references */ + if(0 == (buf_size = src->shared->u.atomic.u.r.cls->getsize( src->shared->u.atomic.u.r.file, s, src->shared->size, - dst->shared->u.atomic.u.r.file, conv_buf, buf_size) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_READERROR, FAIL, "can't read reference data") - } + dst->shared->u.atomic.u.r.file, &dst_copy))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "incorrect size") + + /* Check if conversion buffer is large enough, resize if necessary. */ + if(conv_buf_size < buf_size) { + conv_buf_size = buf_size; + if(NULL == (conv_buf = H5FL_BLK_REALLOC(ref_seq, conv_buf, conv_buf_size))) + HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for type conversion") + HDmemset(conv_buf, 0, conv_buf_size); + } /* end if */ - if(dst_copy && (dst->shared->u.atomic.u.r.loc == H5T_LOC_DISK)) { - H5MM_memcpy(d, conv_buf, buf_size); - } else { - /* Write reference to destination location */ - if(dst->shared->u.atomic.u.r.cls->write( - src->shared->u.atomic.u.r.file, conv_buf, buf_size, src->shared->u.atomic.u.r.rtype, - dst->shared->u.atomic.u.r.file, d, dst->shared->size, b) < 0) - HGOTO_ERROR(H5E_DATATYPE, H5E_WRITEERROR, FAIL, "can't write reference data") + if(dst_copy && (src->shared->u.atomic.u.r.loc == H5T_LOC_DISK)) { + H5MM_memcpy(conv_buf, s, buf_size); + } else { + /* Read reference */ + if(src->shared->u.atomic.u.r.cls->read( + src->shared->u.atomic.u.r.file, s, src->shared->size, + dst->shared->u.atomic.u.r.file, conv_buf, buf_size) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_READERROR, FAIL, "can't read reference data") + } + + if(dst_copy && (dst->shared->u.atomic.u.r.loc == H5T_LOC_DISK)) { + H5MM_memcpy(d, conv_buf, buf_size); + } else { + /* Write reference to destination location */ + if(dst->shared->u.atomic.u.r.cls->write( + src->shared->u.atomic.u.r.file, conv_buf, buf_size, src->shared->u.atomic.u.r.rtype, + dst->shared->u.atomic.u.r.file, d, dst->shared->size, b) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_WRITEERROR, FAIL, "can't write reference data") + } } /* Advance pointers */ diff --git a/src/H5Tpkg.h b/src/H5Tpkg.h index 1dbc229..39bff15 100644 --- a/src/H5Tpkg.h +++ b/src/H5Tpkg.h @@ -182,11 +182,15 @@ struct H5T_path_t { }; /* Reference function pointers */ +typedef herr_t (*H5T_ref_isnullfunc_t)(const H5VL_object_t *file, const void *src_buf, hbool_t *isnull); +typedef herr_t (*H5T_ref_setnullfunc_t)(H5VL_object_t *file, void *dst_buf, void *bg_buf); typedef size_t (*H5T_ref_getsizefunc_t)(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, hbool_t *dst_copy); typedef herr_t (*H5T_ref_readfunc_t)(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size); typedef herr_t (*H5T_ref_writefunc_t)(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5R_type_t src_type, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size, void *bg_buf); typedef struct H5T_ref_class_t { + H5T_ref_isnullfunc_t isnull; /* check if reference value is NIL */ + H5T_ref_setnullfunc_t setnull; /* set a reference value to NIL */ H5T_ref_getsizefunc_t getsize; /* get reference size (bytes) */ H5T_ref_readfunc_t read; /* read reference into buffer */ H5T_ref_writefunc_t write; /* write reference from buffer */ diff --git a/src/H5Tprivate.h b/src/H5Tprivate.h index 86bc174..d8e98af 100644 --- a/src/H5Tprivate.h +++ b/src/H5Tprivate.h @@ -109,7 +109,7 @@ H5_DLLVAR H5T_order_t H5T_native_order_g; /* Private functions */ H5_DLL herr_t H5T_init(void); -H5_DLL H5T_t *H5T_copy(const H5T_t *old_dt, H5T_copy_t method); +H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); H5_DLL herr_t H5T_lock(H5T_t *dt, hbool_t immutable); H5_DLL herr_t H5T_close(H5T_t *dt); H5_DLL herr_t H5T_close_real(H5T_t *dt); diff --git a/src/H5Tref.c b/src/H5Tref.c index b1bc9e8..6f21363 100644 --- a/src/H5Tref.c +++ b/src/H5Tref.c @@ -54,18 +54,24 @@ struct H5Tref_dsetreg { /* Local Prototypes */ /********************/ +static herr_t H5T__ref_mem_isnull(const H5VL_object_t *src_file, const void *src_buf, hbool_t *isnull); +static herr_t H5T__ref_mem_setnull(H5VL_object_t *dst_file, void *dst_buf, void *bg_buf); static size_t H5T__ref_mem_getsize(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, hbool_t *dst_copy); static herr_t H5T__ref_mem_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size); static herr_t H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5R_type_t src_type, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size, void *bg_buf); +static herr_t H5T__ref_disk_isnull(const H5VL_object_t *src_file, const void *src_buf, hbool_t *isnull); +static herr_t H5T__ref_disk_setnull(H5VL_object_t *dst_file, void *dst_buf, void *bg_buf); static size_t H5T__ref_disk_getsize(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, hbool_t *dst_copy); static herr_t H5T__ref_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size); static herr_t H5T__ref_disk_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5R_type_t src_type, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size, void *bg_buf); /* For compatibility */ +static herr_t H5T__ref_obj_disk_isnull(const H5VL_object_t *src_file, const void *src_buf, hbool_t *isnull); static size_t H5T__ref_obj_disk_getsize(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, hbool_t *dst_copy); static herr_t H5T__ref_obj_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size); +static herr_t H5T__ref_dsetreg_disk_isnull(const H5VL_object_t *src_file, const void *src_buf, hbool_t *isnull); static size_t H5T__ref_dsetreg_disk_getsize(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, hbool_t *dst_copy); static herr_t H5T__ref_dsetreg_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size); @@ -75,24 +81,32 @@ static herr_t H5T__ref_dsetreg_disk_read(H5VL_object_t *src_file, const void *sr /* Class for reference in memory */ static const H5T_ref_class_t H5T_ref_mem_g = { + H5T__ref_mem_isnull, /* 'isnull' */ + H5T__ref_mem_setnull, /* 'setnull' */ H5T__ref_mem_getsize, /* 'getsize' */ H5T__ref_mem_read, /* 'read' */ H5T__ref_mem_write /* 'write' */ }; static const H5T_ref_class_t H5T_ref_disk_g = { + H5T__ref_disk_isnull, /* 'isnull' */ + H5T__ref_disk_setnull, /* 'setnull' */ H5T__ref_disk_getsize, /* 'getsize' */ H5T__ref_disk_read, /* 'read' */ H5T__ref_disk_write /* 'write' */ }; static const H5T_ref_class_t H5T_ref_obj_disk_g = { + H5T__ref_obj_disk_isnull, /* 'isnull' */ + NULL, /* 'setnull' */ H5T__ref_obj_disk_getsize, /* 'getsize' */ H5T__ref_obj_disk_read, /* 'read' */ NULL /* 'write' */ }; static const H5T_ref_class_t H5T_ref_dsetreg_disk_g = { + H5T__ref_dsetreg_disk_isnull, /* 'isnull' */ + NULL, /* 'setnull' */ H5T__ref_dsetreg_disk_getsize, /* 'getsize' */ H5T__ref_dsetreg_disk_read, /* 'read' */ NULL /* 'write' */ @@ -268,6 +282,57 @@ done: /*------------------------------------------------------------------------- + * Function: H5T__ref_mem_isnull + * + * Purpose: Check if it's a NULL / uninitialized reference. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t +H5T__ref_mem_isnull(const H5VL_object_t H5_ATTR_UNUSED *src_file, + const void *src_buf, hbool_t *isnull) +{ + const unsigned char zeros[H5T_REF_MEM_SIZE] = { 0 }; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC_NOERR + + /* Check parameters */ + HDassert(src_buf); + HDassert(isnull); + + *isnull = (0 == HDmemcmp(src_buf, zeros, H5T_REF_MEM_SIZE)) ? TRUE : FALSE; + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_mem_isnull() */ + + +/*------------------------------------------------------------------------- + * Function: H5T__ref_mem_setnull + * + * Purpose: Set a reference as NULL / uninitialized. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t +H5T__ref_mem_setnull(H5VL_object_t H5_ATTR_UNUSED *dst_file, void *dst_buf, + H5_ATTR_UNUSED void *bg_buf) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC_NOERR + + HDmemset(dst_buf, 0, H5T_REF_MEM_SIZE); + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_mem_setnull() */ + + +/*------------------------------------------------------------------------- * Function: H5T__ref_mem_getsize * * Purpose: Retrieves the size of a memory based reference. @@ -280,10 +345,12 @@ static size_t H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, size_t H5_ATTR_UNUSED src_size, H5VL_object_t *dst_file, hbool_t *dst_copy) { - H5F_t *src_f; - H5F_t *dst_f; H5VL_object_t *vol_obj = NULL; const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; + hbool_t files_equal = FALSE; + char file_name_buf_static[256]; + char *file_name_buf_dyn = NULL; + ssize_t file_name_len; unsigned flags = 0; size_t ret_value = 0; @@ -296,27 +363,43 @@ H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") - /* We should assert here that the terminal connector is H5VL_NATIVE once - * there is a facility to do so -NAF 2019/10/30 */ - - /* Retrieve files from VOL objects */ - if(NULL == (src_f = (H5F_t *)H5VL_object_data(vol_obj))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") - if(NULL == (dst_f = (H5F_t *)H5VL_object_data(dst_file))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") - /* Set external flag if referenced file is not destination file */ - flags |= (src_f->shared != dst_f->shared) ? H5R_IS_EXTERNAL : 0; + if(H5VL_file_specific(vol_obj, H5VL_FILE_IS_EQUAL, H5P_DATASET_XFER_DEFAULT, NULL, dst_file, &files_equal) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, 0, "can't check if files are equal") + flags |= !files_equal ? H5R_IS_EXTERNAL : 0; /* Force re-calculating encoding size if any flags are set */ if(flags || !src_ref->encode_size) { /* Pass the correct encoding version for the selection depending on the * file libver bounds, this is later retrieved in H5S hyper encode */ - if(src_ref->type == (int8_t)H5R_DATASET_REGION2) - H5CX_set_libver_bounds(dst_f); + if(src_ref->type == (int8_t)H5R_DATASET_REGION2) { + /* Temporary hack to check if this is the native connector. We need to + * add a way to check if the terminal connector is native. For now this + * will break passthroughs, but it's needed for other VOL connectors to + * work. -NAF */ + if(dst_file->connector->cls->value == H5VL_NATIVE_VALUE) { + H5F_t *dst_f; + + if(NULL == (dst_f = (H5F_t *)H5VL_object_data(dst_file))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") + H5CX_set_libver_bounds(dst_f); + } /* end if */ + else + H5CX_set_libver_bounds(NULL); + } /* end if */ + + /* Get file name */ + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { + if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + } /* end if */ /* Determine encoding size */ - if(H5R__encode(H5F_ACTUAL_NAME(src_f), src_ref, NULL, &ret_value, flags) < 0) + if(H5R__encode(file_name_buf_dyn ? file_name_buf_dyn : file_name_buf_static, src_ref, NULL, &ret_value, flags) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTENCODE, 0, "unable to determine encoding size") } else { /* Can do a direct copy and skip blob decoding */ @@ -328,6 +411,8 @@ H5T__ref_mem_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf } done: + H5MM_xfree(file_name_buf_dyn); + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__ref_mem_getsize() */ @@ -346,10 +431,12 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, size_t H5_ATTR_UNUSED src_size, H5VL_object_t *dst_file, void *dst_buf, size_t dst_size) { - H5F_t *src_f; - H5F_t *dst_f; H5VL_object_t *vol_obj = NULL; const H5R_ref_priv_t *src_ref = (const H5R_ref_priv_t *)src_buf; + hbool_t files_equal = FALSE; + char file_name_buf_static[256]; + char *file_name_buf_dyn = NULL; + ssize_t file_name_len; unsigned flags = 0; herr_t ret_value = SUCCEED; @@ -365,28 +452,46 @@ H5T__ref_mem_read(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, if(NULL == (vol_obj = H5VL_vol_object(src_ref->loc_id))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid location identifier") - /* We should assert here that the terminal connector is H5VL_NATIVE once - * there is a facility to do so -NAF 2019/10/30 */ - - /* Retrieve files from VOL objects */ - if(NULL == (src_f = (H5F_t *)H5VL_object_data(vol_obj))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") - if(NULL == (dst_f = (H5F_t *)H5VL_object_data(dst_file))) - HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") - /* Set external flag if referenced file is not destination file */ - flags |= (src_f->shared != dst_f->shared) ? H5R_IS_EXTERNAL : 0; + if(H5VL_file_specific(vol_obj, H5VL_FILE_IS_EQUAL, H5P_DATASET_XFER_DEFAULT, NULL, dst_file, &files_equal) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTCOMPARE, FAIL, "can't check if files are equal") + flags |= !files_equal ? H5R_IS_EXTERNAL : 0; /* Pass the correct encoding version for the selection depending on the * file libver bounds, this is later retrieved in H5S hyper encode */ - if(src_ref->type == (int8_t)H5R_DATASET_REGION2) - H5CX_set_libver_bounds(dst_f); + if(src_ref->type == (int8_t)H5R_DATASET_REGION2) { + /* Temporary hack to check if this is the native connector. We need to + * add a way to check if the terminal connector is native. For now this + * will break passthroughs, but it's needed for other VOL connectors to + * work. -NAF */ + if(dst_file->connector->cls->value == H5VL_NATIVE_VALUE) { + H5F_t *dst_f; + + if(NULL == (dst_f = (H5F_t *)H5VL_object_data(dst_file))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") + H5CX_set_libver_bounds(dst_f); + } /* end if */ + else + H5CX_set_libver_bounds(NULL); + } /* end if */ + + /* Get file name */ + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, sizeof(file_name_buf_static), file_name_buf_static, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + if(file_name_len >= (ssize_t)sizeof(file_name_buf_static)) { + if(NULL == (file_name_buf_dyn = (char *)H5MM_malloc((size_t)file_name_len + 1))) + HGOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, 0, "can't allocate space for file name") + if(H5VL_file_get(vol_obj, H5VL_FILE_GET_NAME, H5P_DATASET_XFER_DEFAULT, NULL, H5I_FILE, (size_t)file_name_len + 1, file_name_buf_dyn, &file_name_len) < 0) + HGOTO_ERROR(H5E_REFERENCE, H5E_CANTGET, 0, "can't get file name") + } /* end if */ /* Encode reference */ - if(H5R__encode(H5F_ACTUAL_NAME(src_f), src_ref, (unsigned char *)dst_buf, &dst_size, flags) < 0) + if(H5R__encode(file_name_buf_dyn ? file_name_buf_dyn : file_name_buf_static, src_ref, (unsigned char *)dst_buf, &dst_size, flags) < 0) HGOTO_ERROR(H5E_REFERENCE, H5E_CANTENCODE, FAIL, "Cannot encode reference") done: + H5MM_xfree(file_name_buf_dyn); + FUNC_LEAVE_NOAPI(ret_value) } /* end H5T__ref_mem_read() */ @@ -468,7 +573,7 @@ H5T__ref_mem_write(H5VL_object_t *src_file, const void *src_buf, size_t src_size /* If no filename set, this is not an external reference */ if(NULL == H5R_REF_FILENAME(dst_ref)) { /* TODO temporary hack to retrieve file object */ - if((file_id = H5F__get_file_id(src_f, FALSE)) < 0) + if((file_id = H5F_get_file_id(src_file, H5I_FILE, FALSE)) < 0) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") /* Attach loc ID to reference and hold reference to it */ @@ -484,6 +589,96 @@ done: /*------------------------------------------------------------------------- + * Function: H5T__ref_disk_isnull + * + * Purpose: Check if it's a NULL / uninitialized reference. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t +H5T__ref_disk_isnull(const H5VL_object_t *src_file, const void *src_buf, + hbool_t *isnull) +{ + const uint8_t *p = (const uint8_t *)src_buf; + H5R_type_t ref_type; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Check parameters */ + HDassert(src_file); + HDassert(src_buf); + HDassert(isnull); + + /* Try to check encoded reference type */ + ref_type = (H5R_type_t)*p++; + if(ref_type) { + /* This is a valid reference */ + *isnull = FALSE; + } else { + /* Skip the size / header */ + p = (const uint8_t *)src_buf + H5R_ENCODE_HEADER_SIZE + H5_SIZEOF_UINT32_T; + + /* Check if blob ID is "nil" */ + if(H5VL_blob_specific(src_file, (void *)p, H5VL_BLOB_ISNULL, isnull) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to check if a blob ID is 'nil'") + } + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_disk_isnull() */ + + +/*------------------------------------------------------------------------- + * Function: H5T__ref_disk_setnull + * + * Purpose: Set a reference as NULL / uninitialized. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t +H5T__ref_disk_setnull(H5VL_object_t *dst_file, void *dst_buf, void *bg_buf) +{ + uint8_t *q = (uint8_t *)dst_buf; + uint8_t *p_bg = (uint8_t *)bg_buf; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + HDassert(dst_file); + HDassert(dst_buf); + + /* TODO Should get rid of bg stuff */ + if(p_bg) { + /* Skip the size / header */ + p_bg += (H5_SIZEOF_UINT32_T + H5R_ENCODE_HEADER_SIZE); + + /* Remove blob for old data */ + if(H5VL_blob_specific(dst_file, (void *)p_bg, H5VL_BLOB_DELETE) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREMOVE, FAIL, "unable to delete blob") + } /* end if */ + + /* Copy header manually so that it does not get encoded into the blob */ + HDmemset(q, 0, H5R_ENCODE_HEADER_SIZE); + q += H5R_ENCODE_HEADER_SIZE; + + /* Set the size */ + UINT32ENCODE(q, 0); + + /* Set blob ID to "nil" */ + if(H5VL_blob_specific(dst_file, q, H5VL_BLOB_SETNULL) < 0) + HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "unable to set a blob ID to 'nil'") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_disk_setnull() */ + + +/*------------------------------------------------------------------------- * Function: H5T__ref_disk_getsize * * Purpose: Retrieves the length of a disk based reference. @@ -562,7 +757,7 @@ H5T__ref_disk_read(H5VL_object_t *src_file, const void *src_buf, size_t src_size q += H5R_ENCODE_HEADER_SIZE; blob_size -= H5R_ENCODE_HEADER_SIZE; - /* Skip the length of the sequence */ + /* Skip the size */ p += H5_SIZEOF_UINT32_T; HDassert(src_size > (H5R_ENCODE_HEADER_SIZE + H5_SIZEOF_UINT32_T)); @@ -606,10 +801,10 @@ H5T__ref_disk_write(H5VL_object_t H5_ATTR_UNUSED *src_file, const void *src_buf, if(p_bg) { size_t p_buf_size_left = dst_size; - /* Skip the length of the reference */ - p_bg += H5_SIZEOF_UINT32_T; - HDassert(p_buf_size_left > H5_SIZEOF_UINT32_T); - p_buf_size_left -= H5_SIZEOF_UINT32_T; + /* Skip the size / header */ + p_bg += (H5_SIZEOF_UINT32_T + H5R_ENCODE_HEADER_SIZE); + HDassert(p_buf_size_left > (H5_SIZEOF_UINT32_T + H5R_ENCODE_HEADER_SIZE)); + p_buf_size_left -= (H5_SIZEOF_UINT32_T + H5R_ENCODE_HEADER_SIZE); /* Remove blob for old data */ if(H5VL_blob_specific(dst_file, (void *)p_bg, H5VL_BLOB_DELETE) < 0) @@ -638,6 +833,48 @@ done: /*------------------------------------------------------------------------- + * Function: H5T__ref_obj_disk_isnull + * + * Purpose: Check if it's a NULL / uninitialized reference. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t H5T__ref_obj_disk_isnull(const H5VL_object_t *src_file, + const void *src_buf, hbool_t *isnull) +{ + H5F_t *src_f; + const uint8_t *p = (const uint8_t *)src_buf; + haddr_t addr; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Check parameters */ + HDassert(src_file); + HDassert(src_buf); + HDassert(isnull); + + /* We should assert here that the terminal connector is H5VL_NATIVE once + * there is a facility to do so -NAF 2019/10/30 */ + + /* Retrieve file from VOL object */ + if(NULL == (src_f = (H5F_t *)H5VL_object_data(src_file))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid VOL object") + + /* Get the object address */ + H5F_addr_decode(src_f, &p, &addr); + + /* Check if heap address is 'nil' */ + *isnull = (addr == 0) ? TRUE : FALSE; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_obj_disk_isnull() */ + + +/*------------------------------------------------------------------------- * Function: H5T__ref_obj_disk_getsize * * Purpose: Retrieves the length of a disk based reference. @@ -718,6 +955,49 @@ done: /*------------------------------------------------------------------------- + * Function: H5T__ref_dsetreg_disk_isnull + * + * Purpose: Check if it's a NULL / uninitialized reference. + * + * Return: Non-negative on success/Negative on failure + * + *------------------------------------------------------------------------- + */ +static herr_t +H5T__ref_dsetreg_disk_isnull(const H5VL_object_t *src_file, const void *src_buf, + hbool_t *isnull) +{ + H5F_t *src_f; + const uint8_t *p = (const uint8_t *)src_buf; + haddr_t addr; + herr_t ret_value = SUCCEED; + + FUNC_ENTER_STATIC + + /* Check parameters */ + HDassert(src_file); + HDassert(src_buf); + HDassert(isnull); + + /* We should assert here that the terminal connector is H5VL_NATIVE once + * there is a facility to do so -NAF 2019/10/30 */ + + /* Retrieve file from VOL object */ + if(NULL == (src_f = (H5F_t *)H5VL_object_data(src_file))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid VOL object") + + /* Get the heap address */ + H5F_addr_decode(src_f, &p, &addr); + + /* Check if heap address is 'nil' */ + *isnull = (addr == 0) ? TRUE : FALSE; + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5T__ref_dsetreg_disk_isnull() */ + + +/*------------------------------------------------------------------------- * Function: H5T__ref_dsetreg_disk_getsize * * Purpose: Retrieves the length of a disk based reference. @@ -727,28 +1007,28 @@ done: *------------------------------------------------------------------------- */ static size_t -H5T__ref_dsetreg_disk_getsize(H5VL_object_t H5_ATTR_UNUSED *file, - const void H5_ATTR_UNUSED *buf, size_t H5_ATTR_UNUSED buf_size, +H5T__ref_dsetreg_disk_getsize(H5VL_object_t H5_ATTR_UNUSED *src_file, + const void H5_ATTR_UNUSED *src_buf, size_t H5_ATTR_UNUSED src_size, H5VL_object_t H5_ATTR_UNUSED *dst_file, hbool_t H5_ATTR_UNUSED *dst_copy) { size_t ret_value = sizeof(struct H5Tref_dsetreg); FUNC_ENTER_STATIC - HDassert(buf); + HDassert(src_buf); #ifndef NDEBUG { - H5F_t *f; + H5F_t *src_f; /* We should assert here that the terminal connector is H5VL_NATIVE once * there is a facility to do so -NAF 2019/10/30 */ /* Retrieve file from VOL object */ - if(NULL == (f = (H5F_t *)H5VL_object_data(file))) + if(NULL == (src_f = (H5F_t *)H5VL_object_data(src_file))) HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid VOL object") - HDassert(buf_size == H5T_REF_DSETREG_DISK_SIZE(f)); + HDassert(src_size == H5T_REF_DSETREG_DISK_SIZE(src_f)); } /* end block */ #endif /* NDEBUG */ @@ -827,3 +1107,4 @@ H5T_ref_reclaim(void *elem, const H5T_t *dt) done: FUNC_LEAVE_NOAPI(ret_value) } /* end H5T_ref_reclaim() */ + diff --git a/src/H5VLcallback.c b/src/H5VLcallback.c index 02e2399..77df207 100644 --- a/src/H5VLcallback.c +++ b/src/H5VLcallback.c @@ -82,10 +82,10 @@ static void *H5VL__dataset_open(void *obj, const H5VL_loc_params_t *loc_params, const H5VL_class_t *cls, const char *name, hid_t dapl_id, hid_t dxpl_id, void **req); static herr_t H5VL__dataset_read(void *dset, const H5VL_class_t *cls, - hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, + hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf, void **req); static herr_t H5VL__dataset_write(void *obj, const H5VL_class_t *cls, - hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, + hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf, void **req); static herr_t H5VL__dataset_get(void *obj, const H5VL_class_t *cls, H5VL_dataset_get_t get_type, hid_t dxpl_id, void **req, va_list arguments); @@ -101,6 +101,8 @@ static void * H5VL__file_open(const H5VL_class_t *cls, const char *name, unsigned flags, hid_t fapl_id, hid_t dxpl_id, void **req); static herr_t H5VL__file_get(void *obj, const H5VL_class_t *cls, H5VL_file_get_t get_type, hid_t dxpl_id, void **req, va_list arguments); +static herr_t H5VL__file_specific_wrap_va_list(void *obj, const H5VL_class_t *cls, + H5VL_file_specific_t specific_type, hid_t dxpl_id, void **req, ...); static herr_t H5VL__file_specific(void *obj, const H5VL_class_t *cls, H5VL_file_specific_t specific_type, hid_t dxpl_id, void **req, va_list arguments); static herr_t H5VL__file_optional(void *obj, const H5VL_class_t *cls, hid_t dxpl_id, @@ -2013,7 +2015,7 @@ done: */ static herr_t H5VL__dataset_read(void *obj, const H5VL_class_t *cls, hid_t mem_type_id, - hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf, + hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf, void **req) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2025,7 +2027,7 @@ H5VL__dataset_read(void *obj, const H5VL_class_t *cls, hid_t mem_type_id, HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "VOL connector has no 'dataset read' method") /* Call the corresponding VOL callback */ - if((cls->dataset_cls.read)(obj, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if((cls->dataset_cls.read)(obj, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_READERROR, FAIL, "dataset read failed") done: @@ -2045,7 +2047,7 @@ done: */ herr_t H5VL_dataset_read(const H5VL_object_t *vol_obj, hid_t mem_type_id, - hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf, + hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf, void **req) { hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ @@ -2059,7 +2061,7 @@ H5VL_dataset_read(const H5VL_object_t *vol_obj, hid_t mem_type_id, vol_wrapper_set = TRUE; /* Call the corresponding internal VOL routine */ - if(H5VL__dataset_read(vol_obj->data, vol_obj->connector->cls, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if(H5VL__dataset_read(vol_obj->data, vol_obj->connector->cls, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_READERROR, FAIL, "dataset read failed") done: @@ -2083,14 +2085,14 @@ done: */ herr_t H5VLdataset_read(void *obj, hid_t connector_id, hid_t mem_type_id, hid_t mem_space_id, - hid_t file_space_id, hid_t plist_id, void *buf, void **req) + hid_t file_space_id, hid_t dxpl_id, void *buf, void **req) { H5VL_class_t *cls; /* VOL connector's class struct */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API_NOINIT H5TRACE8("e", "*xiiiii*x**x", obj, connector_id, mem_type_id, mem_space_id, - file_space_id, plist_id, buf, req); + file_space_id, dxpl_id, buf, req); /* Check args and get class pointer */ if(NULL == obj) @@ -2099,7 +2101,7 @@ H5VLdataset_read(void *obj, hid_t connector_id, hid_t mem_type_id, hid_t mem_spa HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a VOL connector ID") /* Call the corresponding internal VOL routine */ - if(H5VL__dataset_read(obj, cls, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if(H5VL__dataset_read(obj, cls, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_CANTINIT, FAIL, "unable to read dataset") done: @@ -2119,7 +2121,7 @@ done: */ static herr_t H5VL__dataset_write(void *obj, const H5VL_class_t *cls, hid_t mem_type_id, - hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf, + hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf, void **req) { herr_t ret_value = SUCCEED; /* Return value */ @@ -2131,7 +2133,7 @@ H5VL__dataset_write(void *obj, const H5VL_class_t *cls, hid_t mem_type_id, HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "VOL connector has no 'dataset write' method") /* Call the corresponding VOL callback */ - if((cls->dataset_cls.write)(obj, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if((cls->dataset_cls.write)(obj, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_WRITEERROR, FAIL, "dataset write failed") done: @@ -2151,7 +2153,7 @@ done: */ herr_t H5VL_dataset_write(const H5VL_object_t *vol_obj, hid_t mem_type_id, - hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf, + hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf, void **req) { hbool_t vol_wrapper_set = FALSE; /* Whether the VOL object wrapping context was set up */ @@ -2165,7 +2167,7 @@ H5VL_dataset_write(const H5VL_object_t *vol_obj, hid_t mem_type_id, vol_wrapper_set = TRUE; /* Call the corresponding internal VOL routine */ - if(H5VL__dataset_write(vol_obj->data, vol_obj->connector->cls, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if(H5VL__dataset_write(vol_obj->data, vol_obj->connector->cls, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_WRITEERROR, FAIL, "dataset write failed") done: @@ -2189,14 +2191,14 @@ done: */ herr_t H5VLdataset_write(void *obj, hid_t connector_id, hid_t mem_type_id, hid_t mem_space_id, - hid_t file_space_id, hid_t plist_id, const void *buf, void **req) + hid_t file_space_id, hid_t dxpl_id, const void *buf, void **req) { H5VL_class_t *cls; /* VOL connector's class struct */ herr_t ret_value = SUCCEED; /* Return value */ FUNC_ENTER_API_NOINIT H5TRACE8("e", "*xiiiii*x**x", obj, connector_id, mem_type_id, mem_space_id, - file_space_id, plist_id, buf, req); + file_space_id, dxpl_id, buf, req); /* Check args and get class pointer */ if(NULL == obj) @@ -2205,7 +2207,7 @@ H5VLdataset_write(void *obj, hid_t connector_id, hid_t mem_type_id, hid_t mem_sp HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a VOL connector ID") /* Call the corresponding internal VOL routine */ - if(H5VL__dataset_write(obj, cls, mem_type_id, mem_space_id, file_space_id, plist_id, buf, req) < 0) + if(H5VL__dataset_write(obj, cls, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, req) < 0) HGOTO_ERROR(H5E_VOL, H5E_CANTINIT, FAIL, "unable to write dataset") done: @@ -2989,6 +2991,43 @@ done: /*------------------------------------------------------------------------- + * Function: H5VL__file_specific_wrap_va_list + * + * Purpose: Perform File specific operations through the VOL. Just + * starts a va_list and passes it to the connector's + * callback. Needed when the VOL layer needs to replace one + * of the variable arguments. + * + * Return: Success: Non-negative + * Failure: Negative + * + *------------------------------------------------------------------------- + */ +static herr_t +H5VL__file_specific_wrap_va_list(void *obj, const H5VL_class_t *cls, + H5VL_file_specific_t specific_type, hid_t dxpl_id, void **req, ...) +{ + va_list arguments; /* Argument list passed from the API call */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_STATIC + + /* Start access to the varargs, so they are available in all situations below */ + HDva_start(arguments, req); + + /* Call the corresponding VOL callback */ + if((cls->file_cls.specific)(obj, specific_type, dxpl_id, req, arguments) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTOPERATE, FAIL, "file specific failed") + +done: + /* End access to the va_list */ + HDva_end(arguments); + + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5VL__file_specific_wrap_va_list() */ + + +/*------------------------------------------------------------------------- * Function: H5VL__file_specific * * Purpose: Perform File specific operations through the VOL @@ -3010,9 +3049,38 @@ H5VL__file_specific(void *obj, const H5VL_class_t *cls, H5VL_file_specific_t spe if(NULL == cls->file_cls.specific) HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "VOL connector has no 'file specific' method") - /* Call the corresponding VOL callback */ - if((cls->file_cls.specific)(obj, specific_type, dxpl_id, req, arguments) < 0) - HGOTO_ERROR(H5E_VOL, H5E_CANTOPERATE, FAIL, "file specific failed") + /* Special handling for file is equal */ + if(specific_type == H5VL_FILE_IS_EQUAL) { + va_list tmp_args; /* Argument list passed from the API call */ + H5VL_object_t *vol_obj2; /* Second VOL object */ + hbool_t *is_equal; /* Output variable */ + int cmp_value; /* Comparison result */ + + /* Get parameters */ + HDva_copy(tmp_args, arguments); + vol_obj2 = HDva_arg(tmp_args, H5VL_object_t *); + is_equal = HDva_arg(tmp_args, hbool_t *); + HDva_end(tmp_args); + + HDassert(vol_obj2); + + /* Compare connector classes */ + if(H5VL_cmp_connector_cls(&cmp_value, cls, vol_obj2->connector->cls) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTCOMPARE, FAIL, "can't compare connector classes") + + /* If the classes are different the files are different */ + if(cmp_value) + *is_equal = FALSE; + else + /* Make callback (need to extract data from vol_obj2 and redo the + * va_list) */ + if(H5VL__file_specific_wrap_va_list(obj, cls, specific_type, dxpl_id, req, vol_obj2->data, is_equal) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTOPERATE, FAIL, "file specific failed") + } /* end if */ + else + /* Call the corresponding VOL callback */ + if((cls->file_cls.specific)(obj, specific_type, dxpl_id, req, arguments) < 0) + HGOTO_ERROR(H5E_VOL, H5E_CANTOPERATE, FAIL, "file specific failed") done: FUNC_LEAVE_NOAPI(ret_value) diff --git a/src/H5VLconnector.h b/src/H5VLconnector.h index 46383bb..f0925bf 100644 --- a/src/H5VLconnector.h +++ b/src/H5VLconnector.h @@ -122,7 +122,8 @@ typedef enum H5VL_file_specific_t { H5VL_FILE_MOUNT, /* Mount a file */ H5VL_FILE_UNMOUNT, /* Unmount a file */ H5VL_FILE_IS_ACCESSIBLE, /* Check if a file is accessible */ - H5VL_FILE_DELETE /* Delete a file */ + H5VL_FILE_DELETE, /* Delete a file */ + H5VL_FILE_IS_EQUAL /* Check if two files are the same */ } H5VL_file_specific_t; /* types for group GET callback */ @@ -160,6 +161,7 @@ typedef enum H5VL_link_specific_t { /* types for object GET callback */ typedef enum H5VL_object_get_t { + H5VL_OBJECT_GET_FILE, /* object file */ H5VL_OBJECT_GET_NAME, /* object name */ H5VL_OBJECT_GET_TYPE /* object type */ } H5VL_object_get_t; @@ -286,9 +288,9 @@ typedef struct H5VL_dataset_class_t { void *(*open)(void *obj, const H5VL_loc_params_t *loc_params, const char *name, hid_t dapl_id, hid_t dxpl_id, void **req); herr_t (*read)(void *dset, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, - hid_t xfer_plist_id, void * buf, void **req); + hid_t dxpl_id, void * buf, void **req); herr_t (*write)(void *dset, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, - hid_t xfer_plist_id, const void * buf, void **req); + hid_t dxpl_id, const void * buf, void **req); herr_t (*get)(void *obj, H5VL_dataset_get_t get_type, hid_t dxpl_id, void **req, va_list arguments); herr_t (*specific)(void *obj, H5VL_dataset_specific_t specific_type, hid_t dxpl_id, void **req, va_list arguments); @@ -340,10 +342,10 @@ typedef struct H5VL_link_class_t { hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id, void **req, va_list arguments); herr_t (*copy)(void *src_obj, const H5VL_loc_params_t *loc_params1, void *dst_obj, const H5VL_loc_params_t *loc_params2, - hid_t lcpl, hid_t lapl, hid_t dxpl_id, void **req); + hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id, void **req); herr_t (*move)(void *src_obj, const H5VL_loc_params_t *loc_params1, void *dst_obj, const H5VL_loc_params_t *loc_params2, - hid_t lcpl, hid_t lapl, hid_t dxpl_id, void **req); + hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id, void **req); herr_t (*get)(void *obj, const H5VL_loc_params_t *loc_params, H5VL_link_get_t get_type, hid_t dxpl_id, void **req, va_list arguments); herr_t (*specific)(void *obj, const H5VL_loc_params_t *loc_params, H5VL_link_specific_t specific_type, diff --git a/src/H5VLint.c b/src/H5VLint.c index 733a2b5..284b266 100644 --- a/src/H5VLint.c +++ b/src/H5VLint.c @@ -1639,6 +1639,12 @@ H5VL_cmp_connector_cls(int *cmp_value, const H5VL_class_t *cls1, const H5VL_clas HDassert(cls1); HDassert(cls2); + /* If the pointers are the same the classes are the same */ + if(cls1 == cls2) { + *cmp_value = 0; + HGOTO_DONE(SUCCEED); + } /* end if */ + /* Compare connector "values" */ if(cls1->value < cls2->value) { *cmp_value = -1; diff --git a/src/H5VLnative.h b/src/H5VLnative.h index 5b51e66..73cec8d 100644 --- a/src/H5VLnative.h +++ b/src/H5VLnative.h @@ -57,25 +57,24 @@ typedef int H5VL_native_file_optional_t; #define H5VL_NATIVE_FILE_GET_MDC_SIZE 7 /* H5Fget_mdc_size */ #define H5VL_NATIVE_FILE_GET_SIZE 8 /* H5Fget_filesize */ #define H5VL_NATIVE_FILE_GET_VFD_HANDLE 9 /* H5Fget_vfd_handle */ -#define H5VL_NATIVE_FILE_GET_FILE_ID 10 /* H5Fget_file_id */ -#define H5VL_NATIVE_FILE_RESET_MDC_HIT_RATE 11 /* H5Freset_mdc_hit_rate_stats */ -#define H5VL_NATIVE_FILE_SET_MDC_CONFIG 12 /* H5Fset_mdc_config */ -#define H5VL_NATIVE_FILE_GET_METADATA_READ_RETRY_INFO 13 /* H5Fget_metadata_read_retry_info */ -#define H5VL_NATIVE_FILE_START_SWMR_WRITE 14 /* H5Fstart_swmr_write */ -#define H5VL_NATIVE_FILE_START_MDC_LOGGING 15 /* H5Fstart_mdc_logging */ -#define H5VL_NATIVE_FILE_STOP_MDC_LOGGING 16 /* H5Fstop_mdc_logging */ -#define H5VL_NATIVE_FILE_GET_MDC_LOGGING_STATUS 17 /* H5Fget_mdc_logging_status */ -#define H5VL_NATIVE_FILE_FORMAT_CONVERT 18 /* H5Fformat_convert */ -#define H5VL_NATIVE_FILE_RESET_PAGE_BUFFERING_STATS 19 /* H5Freset_page_buffering_stats */ -#define H5VL_NATIVE_FILE_GET_PAGE_BUFFERING_STATS 20 /* H5Fget_page_buffering_stats */ -#define H5VL_NATIVE_FILE_GET_MDC_IMAGE_INFO 21 /* H5Fget_mdc_image_info */ -#define H5VL_NATIVE_FILE_GET_EOA 22 /* H5Fget_eoa */ -#define H5VL_NATIVE_FILE_INCR_FILESIZE 23 /* H5Fincrement_filesize */ -#define H5VL_NATIVE_FILE_SET_LIBVER_BOUNDS 24 /* H5Fset_latest_format/libver_bounds */ -#define H5VL_NATIVE_FILE_GET_MIN_DSET_OHDR_FLAG 25 /* H5Fget_dset_no_attrs_hint */ -#define H5VL_NATIVE_FILE_SET_MIN_DSET_OHDR_FLAG 26 /* H5Fset_dset_no_attrs_hint */ -#define H5VL_NATIVE_FILE_GET_MPI_ATOMICITY 27 /* H5Fget_mpi_atomicity */ -#define H5VL_NATIVE_FILE_SET_MPI_ATOMICITY 28 /* H5Fset_mpi_atomicity */ +#define H5VL_NATIVE_FILE_RESET_MDC_HIT_RATE 10 /* H5Freset_mdc_hit_rate_stats */ +#define H5VL_NATIVE_FILE_SET_MDC_CONFIG 11 /* H5Fset_mdc_config */ +#define H5VL_NATIVE_FILE_GET_METADATA_READ_RETRY_INFO 12 /* H5Fget_metadata_read_retry_info */ +#define H5VL_NATIVE_FILE_START_SWMR_WRITE 13 /* H5Fstart_swmr_write */ +#define H5VL_NATIVE_FILE_START_MDC_LOGGING 14 /* H5Fstart_mdc_logging */ +#define H5VL_NATIVE_FILE_STOP_MDC_LOGGING 15 /* H5Fstop_mdc_logging */ +#define H5VL_NATIVE_FILE_GET_MDC_LOGGING_STATUS 16 /* H5Fget_mdc_logging_status */ +#define H5VL_NATIVE_FILE_FORMAT_CONVERT 17 /* H5Fformat_convert */ +#define H5VL_NATIVE_FILE_RESET_PAGE_BUFFERING_STATS 18 /* H5Freset_page_buffering_stats */ +#define H5VL_NATIVE_FILE_GET_PAGE_BUFFERING_STATS 19 /* H5Fget_page_buffering_stats */ +#define H5VL_NATIVE_FILE_GET_MDC_IMAGE_INFO 20 /* H5Fget_mdc_image_info */ +#define H5VL_NATIVE_FILE_GET_EOA 21 /* H5Fget_eoa */ +#define H5VL_NATIVE_FILE_INCR_FILESIZE 22 /* H5Fincrement_filesize */ +#define H5VL_NATIVE_FILE_SET_LIBVER_BOUNDS 23 /* H5Fset_latest_format/libver_bounds */ +#define H5VL_NATIVE_FILE_GET_MIN_DSET_OHDR_FLAG 24 /* H5Fget_dset_no_attrs_hint */ +#define H5VL_NATIVE_FILE_SET_MIN_DSET_OHDR_FLAG 25 /* H5Fset_dset_no_attrs_hint */ +#define H5VL_NATIVE_FILE_GET_MPI_ATOMICITY 26 /* H5Fget_mpi_atomicity */ +#define H5VL_NATIVE_FILE_SET_MPI_ATOMICITY 27 /* H5Fset_mpi_atomicity */ /* Typedef and values for native VOL connector group optional VOL operations */ typedef int H5VL_native_group_optional_t; diff --git a/src/H5VLnative_file.c b/src/H5VLnative_file.c index 094722e..588d59f 100644 --- a/src/H5VLnative_file.c +++ b/src/H5VLnative_file.c @@ -418,6 +418,19 @@ H5VL__native_file_specific(void *obj, H5VL_file_specific_t specific_type, break; } + /* Check if two files are the same */ + case H5VL_FILE_IS_EQUAL: + { + H5F_t *file2 = (H5F_t *)HDva_arg(arguments, void *); + hbool_t *is_equal = HDva_arg(arguments, hbool_t *); + + if(!obj || !file2) + *is_equal = FALSE; + else + *is_equal = (((H5F_t *)obj)->shared == file2->shared); + break; + } + default: HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "invalid specific operation") } /* end switch */ @@ -578,20 +591,6 @@ H5VL__native_file_optional(void *obj, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR break; } - /* H5Iget_file_id */ - case H5VL_NATIVE_FILE_GET_FILE_ID: - { - H5I_type_t type = (H5I_type_t)HDva_arg(arguments, int); /* enum work-around */ - hbool_t app_ref = (hbool_t)HDva_arg(arguments, int); - hid_t *file_id = HDva_arg(arguments, hid_t *); - - if(NULL == (f = H5F__get_file(obj, type))) - HGOTO_ERROR(H5E_FILE, H5E_BADTYPE, FAIL, "not a file or file object") - if((*file_id = H5F__get_file_id(f, app_ref)) < 0) - HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get file ID") - break; - } - /* H5Fclear_elink_file_cache */ case H5VL_NATIVE_FILE_CLEAR_ELINK_CACHE: { diff --git a/src/H5VLnative_object.c b/src/H5VLnative_object.c index 675d8cf..dfa4eab 100644 --- a/src/H5VLnative_object.c +++ b/src/H5VLnative_object.c @@ -16,10 +16,11 @@ */ #define H5O_FRIEND /* Suppress error about including H5Opkg */ +#define H5F_FRIEND /* Suppress error about including H5Fpkg */ #include "H5private.h" /* Generic Functions */ #include "H5Eprivate.h" /* Error handling */ -#include "H5Fprivate.h" /* Files */ +#include "H5Fpkg.h" /* Files (pkg needed for id_exists) */ #include "H5Gprivate.h" /* Groups */ #include "H5Iprivate.h" /* IDs */ #include "H5Opkg.h" /* Object headers */ @@ -150,6 +151,25 @@ H5VL__native_object_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_obj HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object") switch(get_type) { + + /* Object file */ + case H5VL_OBJECT_GET_FILE: + { + void **ret = HDva_arg(arguments, void **); + + if(loc_params->type == H5VL_OBJECT_BY_SELF) { + *ret = (void *)loc.oloc->file; + + /* TODO we currently need to set id_exists to TRUE because + * the upper layer will create an ID from the returned + * object. In theory this should not be needed and id_exists + * should be removed once the H5Fmount code gets fixed. */ + loc.oloc->file->id_exists = TRUE; + } else + HGOTO_ERROR(H5E_VOL, H5E_UNSUPPORTED, FAIL, "unknown get_file parameters") + break; + } + /* Object name */ case H5VL_OBJECT_GET_NAME: { diff --git a/src/H5VLpassthru.c b/src/H5VLpassthru.c index d8181bb..d9a207f 100644 --- a/src/H5VLpassthru.c +++ b/src/H5VLpassthru.c @@ -2580,7 +2580,7 @@ H5VL_pass_through_request_notify(void *obj, H5VL_request_notify_t cb, void *ctx) herr_t ret_value; #ifdef ENABLE_PASSTHRU_LOGGING - printf("------- PASS THROUGH VOL REQUEST Wait\n"); + printf("------- PASS THROUGH VOL REQUEST Notify\n"); #endif ret_value = H5VLrequest_notify(o->under_object, o->under_vol_id, cb, ctx); diff --git a/src/H5VLprivate.h b/src/H5VLprivate.h index ca474a7..c572b79 100644 --- a/src/H5VLprivate.h +++ b/src/H5VLprivate.h @@ -140,8 +140,8 @@ H5_DLL herr_t H5VL_attr_close(const H5VL_object_t *vol_obj, hid_t dxpl_id, void /* Dataset functions */ H5_DLL void *H5VL_dataset_create(const H5VL_object_t *vol_obj, const H5VL_loc_params_t *loc_params, const char *name, hid_t lcpl_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, hid_t dapl_id, hid_t dxpl_id, void **req); H5_DLL void *H5VL_dataset_open(const H5VL_object_t *vol_obj, const H5VL_loc_params_t *loc_params, const char *name, hid_t dapl_id, hid_t dxpl_id, void **req); -H5_DLL herr_t H5VL_dataset_read(const H5VL_object_t *vol_obj, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf, void **req); -H5_DLL herr_t H5VL_dataset_write(const H5VL_object_t *vol_obj, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf, void **req); +H5_DLL herr_t H5VL_dataset_read(const H5VL_object_t *vol_obj, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf, void **req); +H5_DLL herr_t H5VL_dataset_write(const H5VL_object_t *vol_obj, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf, void **req); H5_DLL herr_t H5VL_dataset_get(const H5VL_object_t *vol_obj, H5VL_dataset_get_t get_type, hid_t dxpl_id, void **req, ...); H5_DLL herr_t H5VL_dataset_specific(const H5VL_object_t *cls, H5VL_dataset_specific_t specific_type, hid_t dxpl_id, void **req, ...); H5_DLL herr_t H5VL_dataset_optional(const H5VL_object_t *vol_obj, hid_t dxpl_id, void **req, ...); diff --git a/src/H5trace.c b/src/H5trace.c index 79dfbc8..65e267e 100644 --- a/src/H5trace.c +++ b/src/H5trace.c @@ -3000,6 +3000,9 @@ H5_trace(const double *returning, const char *func, const char *type, ...) H5VL_object_get_t get = (H5VL_object_get_t)HDva_arg(ap, int); switch(get) { + case H5VL_OBJECT_GET_FILE: + HDfprintf(out, "H5VL_OBJECT_GET_FILE"); + break; case H5VL_OBJECT_GET_NAME: HDfprintf(out, "H5VL_OBJECT_GET_NAME"); break; diff --git a/src/libhdf5.settings.in b/src/libhdf5.settings.in index 0c2be75..1591bed 100644 --- a/src/libhdf5.settings.in +++ b/src/libhdf5.settings.in @@ -39,7 +39,7 @@ Languages: H5_CPPFLAGS: @H5_CPPFLAGS@ AM_CPPFLAGS: @AM_CPPFLAGS@ C Flags: @CFLAGS@ - H5 C Flags: @H5_CFLAGS@ @H5_ECFLAGS@ + H5 C Flags: @H5_CFLAGS@ AM C Flags: @AM_CFLAGS@ Shared C Library: @enable_shared@ Static C Library: @enable_static@ diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index d3f8ed8..c7a945e 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -16,11 +16,9 @@ set (TEST_LIB_SOURCES ${HDF5_TEST_SOURCE_DIR}/cache_common.c ${HDF5_TEST_SOURCE_DIR}/external_common.c ${HDF5_TEST_SOURCE_DIR}/swmr_common.c - ${HDF5_TEST_SOURCE_DIR}/vds_swmr_common.c ) set (TEST_LIB_HEADERS - ${HDF5_TEST_SOURCE_DIR}/H5srcdir.h ${HDF5_TEST_SOURCE_DIR}/h5test.h ${HDF5_TEST_SOURCE_DIR}/cache_common.h ${HDF5_TEST_SOURCE_DIR}/external_common.h diff --git a/test/H5srcdir.c b/test/H5srcdir.c deleted file mode 100644 index 8268d2c..0000000 --- a/test/H5srcdir.c +++ /dev/null @@ -1,61 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "H5private.h" -#include "H5srcdir.h" - -/* Buffer to construct path in and return pointer to */ -char srcdir_path[1024] = ""; - -/* Buffer to construct file in and return pointer to */ -char srcdir_testpath[1024] = ""; - -/* Just return the srcdir path */ -const char * -H5_get_srcdir(void) -{ - const char *srcdir = HDgetenv("srcdir"); - - /* Check for using the srcdir from configure time */ - if(NULL == srcdir) - srcdir = config_srcdir; - - /* Build path to all test files */ - if((HDstrlen(srcdir) + 2) < sizeof(srcdir_path)) { - HDsnprintf(srcdir_path, sizeof(srcdir_path), "%s/", srcdir); - return(srcdir_path); - } /* end if */ - else - return(NULL); -} /* end H5_get_srcdir() */ - -/* Append the test file name to the srcdir path and return the whole string */ -const char * -H5_get_srcdir_filename(const char *filename) -{ - const char *srcdir = H5_get_srcdir(); - - /* Check for error */ - if(NULL == srcdir) - return(NULL); - else { - /* Build path to test file */ - if((HDstrlen(srcdir) + HDstrlen(filename) + 1) < sizeof(srcdir_testpath)) { - HDsnprintf(srcdir_testpath, sizeof(srcdir_testpath), "%s%s", srcdir, filename); - return(srcdir_testpath); - } /* end if */ - else - return(NULL); - } /* end else */ -} /* end H5_get_srcdir_filename() */ - diff --git a/test/H5srcdir.h b/test/H5srcdir.h index d0a4bf7..32fe8c9 100644 --- a/test/H5srcdir.h +++ b/test/H5srcdir.h @@ -24,16 +24,47 @@ #include "H5srcdir_str.h" /* Buffer to construct path in and return pointer to */ -extern char srcdir_path[1024]; +static char srcdir_path[1024] = ""; /* Buffer to construct file in and return pointer to */ -extern char srcdir_testpath[1024]; +static char srcdir_testpath[1024] = ""; /* Just return the srcdir path */ -const char *H5_get_srcdir(void); +static const char * +H5_get_srcdir(void) +{ + const char *srcdir = HDgetenv("srcdir"); + + /* Check for using the srcdir from configure time */ + if(NULL == srcdir) + srcdir = config_srcdir; + + /* Build path to all test files */ + if((HDstrlen(srcdir) + 2) < sizeof(srcdir_path)) { + HDsnprintf(srcdir_path, sizeof(srcdir_path), "%s/", srcdir); + return(srcdir_path); + } /* end if */ + else + return(NULL); +} /* end H5_get_srcdir() */ /* Append the test file name to the srcdir path and return the whole string */ -const char *H5_get_srcdir_filename(const char *); +static const char *H5_get_srcdir_filename(const char *filename) +{ + const char *srcdir = H5_get_srcdir(); + /* Check for error */ + if(NULL == srcdir) + return(NULL); + else { + /* Build path to test file */ + if((HDstrlen(srcdir) + HDstrlen(filename) + 1) < sizeof(srcdir_testpath)) { + HDsnprintf(srcdir_testpath, sizeof(srcdir_testpath), "%s%s", srcdir, filename); + return(srcdir_testpath); + } /* end if */ + else + return(NULL); + } /* end else */ +} /* end H5_get_srcdir_filename() */ #endif /* _H5SRCDIR_H */ diff --git a/test/H5srcdir_str.h.in b/test/H5srcdir_str.h.in index ba30a88..bab1df3 100644 --- a/test/H5srcdir_str.h.in +++ b/test/H5srcdir_str.h.in @@ -16,5 +16,5 @@ */ /* Set the 'srcdir' path from configure time */ -#define config_srcdir "@srcdir@" +static const char *config_srcdir = "@srcdir@"; diff --git a/test/Makefile.am b/test/Makefile.am index d66200d..57080aa 100644 --- a/test/Makefile.am +++ b/test/Makefile.am @@ -135,7 +135,7 @@ else noinst_LTLIBRARIES=libh5test.la endif -libh5test_la_SOURCES=h5test.c testframe.c cache_common.c swmr_common.c external_common.c H5srcdir.c +libh5test_la_SOURCES=h5test.c testframe.c cache_common.c swmr_common.c external_common.c # Use libhd5test.la to compile all of the tests LDADD=libh5test.la $(LIBHDF5) @@ -145,12 +145,6 @@ ttsafe_SOURCES=ttsafe.c ttsafe_dcreate.c ttsafe_error.c ttsafe_cancel.c \ ttsafe_acreate.c cache_image_SOURCES=cache_image.c genall5.c -#filter_plugin_SOURCES=filter_plugin.c H5srcdir.c - -vds_swmr_gen_SOURCES=vds_swmr_gen.c vds_swmr_common.c -vds_swmr_writer_SOURCES=vds_swmr_writer.c vds_swmr_common.c -vds_swmr_reader_SOURCES=vds_swmr_reader.c vds_swmr_common.c - VFD_LIST = sec2 stdio core core_paged split multi family if DIRECT_VFD_CONDITIONAL VFD_LIST += direct diff --git a/test/cache.c b/test/cache.c index e59dc3e..1a726fa 100644 --- a/test/cache.c +++ b/test/cache.c @@ -16926,7 +16926,7 @@ check_move_entry_errs(unsigned paged) { herr_t result; H5F_t * file_ptr = NULL; - H5C_t * cache_ptr; + H5C_t * cache_ptr = NULL; test_entry_t * entry_ptr = NULL; test_entry_t * entry_0_0_ptr; test_entry_t * entry_0_1_ptr; diff --git a/test/cache_common.c b/test/cache_common.c index 740523e..24962bc 100644 --- a/test/cache_common.c +++ b/test/cache_common.c @@ -5522,7 +5522,7 @@ col_major_scan_backward(H5F_t * file_ptr, int mile_stone = 1; int32_t type; int32_t idx; - int32_t local_max_index[NUMBER_OF_ENTRY_TYPES] = {0}; + int32_t local_max_index[NUMBER_OF_ENTRY_TYPES]; if ( verbose ) HDfprintf(stdout, "%s: entering.\n", FUNC); diff --git a/test/cache_tagging.c b/test/cache_tagging.c index c3921ea..7ce4e88 100644 --- a/test/cache_tagging.c +++ b/test/cache_tagging.c @@ -528,7 +528,7 @@ check_file_open_tags(hid_t fcpl, int type) hid_t fid = -1; /* File Identifier */ int verbose = FALSE; /* verbose file outout */ hid_t fapl = -1; /* File access prop list */ - haddr_t root_tag = HADDR_UNDEF; /* Root Group Tag */ + haddr_t root_tag; /* Root Group Tag */ haddr_t sbe_tag; /* Sblock Extension Tag */ /* Testing Macro */ diff --git a/test/del_many_dense_attrs.c b/test/del_many_dense_attrs.c index ce85d1b..ada7a6f 100644 --- a/test/del_many_dense_attrs.c +++ b/test/del_many_dense_attrs.c @@ -70,7 +70,7 @@ main(void) hid_t fapl = -1; /* File access property lists */ hid_t gcpl = -1; /* Group creation property list */ char aname[50]; /* Name of attribute */ - const char *basename="attr";/* Name prefix for attribute */ + char *basename="attr"; /* Name prefix for attribute */ char filename[100]; /* File name */ int i; /* Local index variable */ diff --git a/test/dsets.c b/test/dsets.c index aa84833..eaa469f 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -7065,15 +7065,16 @@ static void make_random_offset_and_increment(long nelts, long *offsetp, long *incp) { long inc; - /* `maxinc` is chosen so that for any `x` in [0, nelts - 1], - * `x + maxinc` does not overflow a long. - */ - const long maxinc = MIN(nelts - 1, LONG_MAX - nelts); HDassert(0 < nelts); *offsetp = HDrandom() % nelts; + /* `maxinc` is chosen so that for any `x` in [0, nelts - 1], + * `x + maxinc` does not overflow a long. + */ + const long maxinc = MIN(nelts - 1, LONG_MAX - nelts); + /* Choose a random number in [1, nelts - 1]. If its greatest divisor * in common with `nelts` is 1, then it will "generate" the additive ring * [0, nelts - 1], so let it be our increment. Otherwise, choose a new diff --git a/test/dt_arith.c b/test/dt_arith.c index 8d04770..7e1adf5 100644 --- a/test/dt_arith.c +++ b/test/dt_arith.c @@ -770,7 +770,7 @@ static int test_particular_fp_integer(void) /* Print errors */ if(dst_c != SCHAR_MAX) { - double x = 0.; + double x; signed char y; if(0 == fails_this_test++) @@ -814,7 +814,7 @@ static int test_particular_fp_integer(void) /* Print errors */ if(dst_i != fill_value) { - float x = 0.; + float x; int y; if(0 == fails_this_test++) @@ -2723,16 +2723,16 @@ my_isnan(dtype_t type, void *val) char s[256]; if (FLT_FLOAT==type) { - float x = 0.; + float x; HDmemcpy(&x, val, sizeof(float)); retval = (x!=x); } else if (FLT_DOUBLE==type) { - double x = 0.; + double x; HDmemcpy(&x, val, sizeof(double)); retval = (x!=x); #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0 } else if (FLT_LDOUBLE==type) { - long double x = 0.; + long double x; HDmemcpy(&x, val, sizeof(long double)); retval = (x!=x); #endif @@ -2746,18 +2746,18 @@ my_isnan(dtype_t type, void *val) */ if (!retval) { if (FLT_FLOAT==type) { - float x = 0.; + float x; HDmemcpy(&x, val, sizeof(float)); HDsnprintf(s, sizeof(s), "%g", (double)x); } else if (FLT_DOUBLE==type) { - double x = 0.; + double x; HDmemcpy(&x, val, sizeof(double)); HDsnprintf(s, sizeof(s), "%g", x); #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0 } else if (FLT_LDOUBLE==type) { - long double x = 0.; + long double x; HDmemcpy(&x, val, sizeof(long double)); HDsnprintf(s, sizeof(s), "%Lg", x); @@ -3197,7 +3197,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst) int check_expo[2]; if (FLT_FLOAT==dst_type) { - float x = 0.; + float x; HDmemcpy(&x, &buf[j*dst_size], sizeof(float)); if (underflow && HDfabsf(x) <= FLT_MIN && HDfabsf(hw_f) <= FLT_MIN) @@ -3208,7 +3208,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst) check_mant[0] = HDfrexpf(x, check_expo+0); check_mant[1] = HDfrexpf(hw_f, check_expo+1); } else if (FLT_DOUBLE==dst_type) { - double x = 0.; + double x; HDmemcpy(&x, &buf[j*dst_size], sizeof(double)); if (underflow && HDfabs(x) <= DBL_MIN && HDfabs(hw_d) <= DBL_MIN) @@ -3220,7 +3220,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst) check_mant[1] = HDfrexp(hw_d, check_expo+1); #if H5_SIZEOF_LONG_DOUBLE !=0 && (H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE) } else { - long double x = 0.; + long double x; HDmemcpy(&x, &buf[j*dst_size], sizeof(long double)); /* dst is largest float, no need to check underflow. */ check_mant[0] = (double)HDfrexpl(x, check_expo+0); @@ -3265,16 +3265,16 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst) HDprintf(" %02x", saved[j*src_size+ENDIAN(src_size,k,sendian)]); HDprintf("%*s", (int)(3*MAX(0, (ssize_t)dst_size-(ssize_t)src_size)), ""); if (FLT_FLOAT==src_type) { - float x = 0.; + float x; HDmemcpy(&x, &saved[j*src_size], sizeof(float)); HDprintf(" %29.20e\n", (double)x); } else if (FLT_DOUBLE==src_type) { - double x = 0.; + double x; HDmemcpy(&x, &saved[j*src_size], sizeof(double)); HDprintf(" %29.20e\n", x); #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE } else { - long double x = 0.; + long double x; HDmemcpy(&x, &saved[j*src_size], sizeof(long double)); HDfprintf(stdout," %29.20Le\n", x); #endif @@ -3285,16 +3285,16 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst) HDprintf(" %02x", buf[j*dst_size+ENDIAN(dst_size,k,dendian)]); HDprintf("%*s", (int)(3*MAX(0, (ssize_t)src_size-(ssize_t)dst_size)), ""); if (FLT_FLOAT==dst_type) { - float x = 0.; + float x; HDmemcpy(&x, &buf[j*dst_size], sizeof(float)); HDprintf(" %29.20e\n", (double)x); } else if (FLT_DOUBLE==dst_type) { - double x = 0.; + double x; HDmemcpy(&x, &buf[j*dst_size], sizeof(double)); HDprintf(" %29.20e\n", x); #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE } else { - long double x = 0.; + long double x; HDmemcpy(&x, &buf[j*dst_size], sizeof(long double)); HDfprintf(stdout," %29.20Le\n", x); #endif diff --git a/test/fillval.c b/test/fillval.c index dd0ca7f..47cd53a 100644 --- a/test/fillval.c +++ b/test/fillval.c @@ -762,11 +762,6 @@ test_rdwr_cases(hid_t file, hid_t dcpl, const char *dname, void *_fillval, comp_datatype *buf_c=NULL; H5D_space_status_t allocation; - fill_c.a = 0; - fill_c.x = 0; - fill_c.y = 0; - fill_c.z = 0; - if(datatype == H5T_INTEGER) { fillval = *(int*)_fillval; } diff --git a/test/null_vol_connector.c b/test/null_vol_connector.c index 64f62c4..5ed8545 100644 --- a/test/null_vol_connector.c +++ b/test/null_vol_connector.c @@ -116,12 +116,6 @@ static const H5VL_class_t null_vol_g = { NULL, /* optional */ NULL /* free */ }, - { /* blob_cls */ - NULL, /* put */ - NULL, /* get */ - NULL, /* specific */ - NULL /* optional */ - }, NULL /* optional */ }; diff --git a/test/objcopy_ref.c b/test/objcopy_ref.c index fdb3179..721a7c6 100644 --- a/test/objcopy_ref.c +++ b/test/objcopy_ref.c @@ -1587,6 +1587,7 @@ main(void) unsigned max_compact, min_dense; int configuration; /* Configuration of tests. */ int ExpressMode; + hbool_t same_file; /* Whether to run tests that only use one file */ /* Setup */ h5_reset(); @@ -1619,6 +1620,11 @@ main(void) hid_t fcpl_src; hid_t fcpl_dst; + /* Start with same_file == TRUE. Use source file settings for these + * tests. Don't run with a non-default destination file setting, as + * destination settings have no effect. */ + same_file = TRUE; + /* No need to test dense attributes with old format */ if(!(configuration & CONFIG_SRC_NEW_FORMAT) && (configuration & CONFIG_DENSE)) continue; @@ -1640,6 +1646,7 @@ main(void) if(configuration & CONFIG_SHARE_DST) { HDputs("Testing with shared dst messages:"); fcpl_dst = fcpl_shared; + same_file = FALSE; } else { HDputs("Testing without shared dst messages:"); @@ -1671,6 +1678,7 @@ main(void) if(configuration & CONFIG_DST_NEW_FORMAT) { HDputs("Testing with latest format for destination file:"); dst_fapl = fapl2; + same_file = FALSE; } /* end if */ else { HDputs("Testing with oldest file format for destination file:"); diff --git a/test/swmr_sparse_reader.c b/test/swmr_sparse_reader.c index a969b16..6adc6c5 100644 --- a/test/swmr_sparse_reader.c +++ b/test/swmr_sparse_reader.c @@ -115,7 +115,7 @@ check_dataset(hid_t fid, unsigned verbose, const symbol_info_t *symbol, symbol_t /* Emit informational message */ if(verbose) - HDfprintf(stderr, "Symbol = '%s', location = %ju,%ju\n", symbol->name, (uintmax_t)start[0], (uintmax_t)start[1]); + HDfprintf(stderr, "Symbol = '%s', location = %lld\n", symbol->name, (long long)start); /* Read record from dataset */ record->rec_id = (uint64_t)ULLONG_MAX; @@ -126,7 +126,7 @@ check_dataset(hid_t fid, unsigned verbose, const symbol_info_t *symbol, symbol_t if(record->rec_id != start[1]) { HDfprintf(stderr, "*** ERROR ***\n"); HDfprintf(stderr, "Incorrect record value!\n"); - HDfprintf(stderr, "Symbol = '%s', location = %ju,%ju, record->rec_id = %" PRIu64 "\n", symbol->name, (uintmax_t)start[0], (uintmax_t)start[1], record->rec_id); + HDfprintf(stderr, "Symbol = '%s', location = %lld, record->rec_id = %llu\n", symbol->name, (long long)start, (unsigned long long)record->rec_id); return -1; } /* end if */ @@ -19,13 +19,6 @@ #define H5I_FRIEND /*suppress error about including H5Ipkg */ #include "H5Ipkg.h" -static herr_t -free_wrapper(void *p) -{ - HDfree(p); - return SUCCEED; -} - /* Test basic functionality of registering and deleting types and IDs */ static int basic_id_test(void) { @@ -76,7 +69,7 @@ static int basic_id_test(void) goto out; /* Register a type */ - myType = H5Iregister_type((size_t)64, 0, free_wrapper); + myType = H5Iregister_type((size_t)64, 0, (H5I_free_t) free ); CHECK(myType, H5I_BADID, "H5Iregister_type"); if(myType == H5I_BADID) @@ -170,7 +163,7 @@ static int basic_id_test(void) H5E_END_TRY /* Register another type and another object in that type */ - myType = H5Iregister_type((size_t)64, 0, free_wrapper); + myType = H5Iregister_type((size_t)64, 0, (H5I_free_t) free ); CHECK(myType, H5I_BADID, "H5Iregister_type"); if(myType == H5I_BADID) @@ -245,7 +238,7 @@ out: /* A dummy search function for the next test */ -static int test_search_func(void H5_ATTR_UNUSED * ptr1, hid_t H5_ATTR_UNUSED id, void H5_ATTR_UNUSED * ptr2) { return 0; } +static int test_search_func(void H5_ATTR_UNUSED * ptr1, void H5_ATTR_UNUSED * ptr2) { return 0; } /* Ensure that public functions cannot access "predefined" ID types */ static int id_predefined_test(void ) @@ -271,7 +264,7 @@ static int id_predefined_test(void ) goto out; H5E_BEGIN_TRY - testPtr = H5Isearch(H5I_GENPROP_LST, test_search_func, testObj); + testPtr = H5Isearch(H5I_GENPROP_LST, (H5I_search_func_t) test_search_func, testObj); H5E_END_TRY CHECK_PTR_NULL(testPtr, "H5Isearch"); @@ -499,7 +492,7 @@ static int test_id_type_list(void) H5I_type_t testType; int i; /* Just a counter variable */ - startType = H5Iregister_type((size_t)8, 0, free_wrapper); + startType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); CHECK(startType, H5I_BADID, "H5Iregister_type"); if(startType == H5I_BADID) goto out; @@ -514,7 +507,7 @@ static int test_id_type_list(void) /* Create types up to H5I_MAX_NUM_TYPES */ for(i = startType + 1; i < H5I_MAX_NUM_TYPES; i++) { - currentType = H5Iregister_type((size_t)8, 0, free_wrapper); + currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); CHECK(currentType, H5I_BADID, "H5Iregister_type"); if(currentType == H5I_BADID) goto out; @@ -523,7 +516,7 @@ static int test_id_type_list(void) /* Wrap around to low type ID numbers */ for(i = H5I_NTYPES; i < startType; i++) { - currentType = H5Iregister_type((size_t)8, 0, free_wrapper); + currentType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); CHECK(currentType, H5I_BADID, "H5Iregister_type"); if(currentType == H5I_BADID) goto out; @@ -531,7 +524,7 @@ static int test_id_type_list(void) /* There should be no room at the inn for a new ID type*/ H5E_BEGIN_TRY - testType = H5Iregister_type((size_t)8, 0, free_wrapper); + testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); H5E_END_TRY VERIFY(testType, H5I_BADID, "H5Iregister_type"); @@ -540,7 +533,7 @@ static int test_id_type_list(void) /* Now delete a type and try to insert again */ H5Idestroy_type(H5I_NTYPES); - testType = H5Iregister_type((size_t)8, 0, free_wrapper); + testType = H5Iregister_type((size_t)8, 0, (H5I_free_t) free ); VERIFY(testType, H5I_NTYPES, "H5Iregister_type"); if(testType != H5I_NTYPES) diff --git a/test/trefer.c b/test/trefer.c index 4ffc2dc..0f9e4f9 100644 --- a/test/trefer.c +++ b/test/trefer.c @@ -89,9 +89,9 @@ test_reference_params(void) H5R_ref_t *wbuf, /* buffer to write to disk */ *rbuf, /* buffer read from disk */ *tbuf; /* temp. buffer read from disk */ - unsigned *obuf; H5R_type_t type; /* Reference type */ - unsigned int i; /* Counters */ + unsigned *tu32; /* Temporary pointer to uint32 data */ + int i; /* Counters */ const char *write_comment = "Foo!"; /* Comments for group */ hid_t ret_id; /* Generic hid_t return value */ ssize_t name_size; /* Size of reference name */ @@ -101,13 +101,12 @@ test_reference_params(void) MESSAGE(5, ("Testing Reference Parameters\n")); /* Allocate write & read buffers */ - wbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - rbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - tbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + wbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + rbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + tbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); - for(i = 0; i < SPACE1_DIM1; i++) - obuf[i] = i * 3; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)i * 3; /* Create file */ fid1 = H5Fcreate(FILE_REF_PARAM, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -138,7 +137,7 @@ test_reference_params(void) CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* Write selection to disk */ - ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf); + ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf); CHECK(ret, FAIL, "H5Dwrite"); /* Close Dataset */ @@ -154,7 +153,7 @@ test_reference_params(void) CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); /* Write attribute to disk */ - ret = H5Awrite(attr, H5T_NATIVE_UINT, obuf); + ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); CHECK(ret, FAIL, "H5Awrite"); /* Close attribute */ @@ -234,19 +233,19 @@ test_reference_params(void) VERIFY(type, H5R_BADTYPE, "H5Rget_type ref"); /* Test parameters to H5Requal */ - ret = H5Requal(NULL, &rbuf[0]); + ret = H5Requal(NULL, (const H5R_ref_t *)&rbuf[0]); VERIFY(ret, FAIL, "H5Requal ref1"); - ret = H5Requal(&rbuf[0], NULL); + ret = H5Requal((const H5R_ref_t *)&rbuf[0], NULL); VERIFY(ret, FAIL, "H5Requal ref2"); /* Test parameters to H5Rcopy */ ret = H5Rcopy(NULL, &wbuf[0]); VERIFY(ret, FAIL, "H5Rcopy src_ref"); - ret = H5Rcopy(&rbuf[0], NULL); + ret = H5Rcopy((const H5R_ref_t *)&rbuf[0], NULL); VERIFY(ret, FAIL, "H5Rcopy dest_ref"); /* Test parameters to H5Ropen_object */ - dset2 = H5Ropen_object(&rbuf[0], H5I_INVALID_HID, H5I_INVALID_HID); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf[0], H5I_INVALID_HID, H5I_INVALID_HID); VERIFY(dset2, FAIL, "H5Ropen_object oapl_id"); dset2 = H5Ropen_object(NULL, H5P_DEFAULT, dapl_id); VERIFY(dset2, FAIL, "H5Ropen_object ref"); @@ -299,7 +298,6 @@ test_reference_params(void) HDfree(wbuf); HDfree(rbuf); HDfree(tbuf); - HDfree(obuf); } /* test_reference_params() */ /**************************************************************** @@ -320,9 +318,10 @@ test_reference_obj(void) hsize_t dims1[] = {SPACE1_DIM1}; hid_t dapl_id; /* Dataset access property list */ H5R_ref_t *wbuf, /* buffer to write to disk */ - *rbuf; /* buffer read from disk */ - unsigned *ibuf, *obuf; - unsigned i, j; /* Counters */ + *rbuf, /* buffer read from disk */ + *tbuf; /* temp. buffer read from disk */ + unsigned *tu32; /* Temporary pointer to uint32 data */ + int i, j; /* Counters */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ @@ -330,13 +329,12 @@ test_reference_obj(void) MESSAGE(5, ("Testing Object Reference Functions\n")); /* Allocate write & read buffers */ - wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); - obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); + wbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + rbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + tbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); - for (i = 0; i < SPACE1_DIM1; i++) - obuf[i] = i * 3; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)i * 3; /* Create file */ fid1 = H5Fcreate(FILE_REF_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -359,7 +357,7 @@ test_reference_obj(void) CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* Write selection to disk */ - ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf); + ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf); CHECK(ret, FAIL, "H5Dwrite"); /* Close Dataset */ @@ -407,28 +405,28 @@ test_reference_obj(void) /* Create reference to dataset */ ret = H5Rcreate_object(fid1, "/Group1/Dataset1", &wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to dataset */ ret = H5Rcreate_object(fid1, "/Group1/Dataset2", &wbuf[1]); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[1], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to group */ ret = H5Rcreate_object(fid1, "/Group1", &wbuf[2]); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[2], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); /* Create reference to named datatype */ ret = H5Rcreate_object(fid1, "/Group1/Datatype1", &wbuf[3]); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&wbuf[3], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[3], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); @@ -461,7 +459,7 @@ test_reference_obj(void) CHECK(ret, FAIL, "H5Dread"); /* Open dataset object */ - dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, dapl_id); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); /* Check information in referenced dataset */ @@ -472,18 +470,18 @@ test_reference_obj(void) VERIFY(ret, SPACE1_DIM1, "H5Sget_simple_extent_npoints"); /* Read from disk */ - ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf); + ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, tbuf); CHECK(ret, FAIL, "H5Dread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(ibuf[i], i * 3, "Data"); + for(tu32 = (unsigned *)tbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)(i*3), "Data"); /* Close dereferenced Dataset */ ret = H5Dclose(dset2); CHECK(ret, FAIL, "H5Dclose"); /* Open group object. GAPL isn't supported yet. But it's harmless to pass in */ - group = H5Ropen_object(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + group = H5Ropen_object((const H5R_ref_t *)&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); CHECK(group, H5I_INVALID_HID, "H5Ropen_object"); /* Close group */ @@ -491,7 +489,7 @@ test_reference_obj(void) CHECK(ret, FAIL, "H5Gclose"); /* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */ - tid1 = H5Ropen_object(&rbuf[3], H5P_DEFAULT, H5P_DEFAULT); + tid1 = H5Ropen_object((const H5R_ref_t *)&rbuf[3], H5P_DEFAULT, H5P_DEFAULT); CHECK(tid1, H5I_INVALID_HID, "H5Ropen_object"); /* Verify correct datatype */ @@ -532,8 +530,7 @@ test_reference_obj(void) /* Free memory buffers */ HDfree(wbuf); HDfree(rbuf); - HDfree(ibuf); - HDfree(obuf); + HDfree(tbuf); } /* test_reference_obj() */ /**************************************************************** @@ -568,7 +565,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t high[SPACE2_RANK]; /* Selection bounds */ H5R_ref_t *wbuf, /* buffer to write to disk */ *rbuf; /* buffer read from disk */ - H5R_ref_t nvrbuf[3]={{{0}},{{101}},{{255}}}; /* buffer with non-valid refs */ + H5R_ref_t nvrbuf[3]={{0},{101},{255}}; /* buffer with non-valid refs */ uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ *drbuf; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ @@ -586,8 +583,8 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) MESSAGE(5, ("Testing Dataset Region Reference Functions\n")); /* Allocate write & read buffers */ - wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + wbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + rbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); dwbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)(SPACE2_DIM1 * SPACE2_DIM2)); drbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)(SPACE2_DIM1 * SPACE2_DIM2)); @@ -650,7 +647,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) /* Store first dataset region */ ret = H5Rcreate_region(fid1, "/Dataset2", sid2, &wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_region"); - ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -694,7 +691,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) ret = H5Rcreate_region(fid1, "/Dataset2", sid2, &wbuf[2]); CHECK(ret, FAIL, "H5Rcreate_region"); - ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[2], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -767,7 +764,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) * Dereference an undefined reference (should fail) */ H5E_BEGIN_TRY { - dset2 = H5Ropen_object(&rdata_NA[0], H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&rdata_NA[0], H5P_DEFAULT, H5P_DEFAULT); } H5E_END_TRY; VERIFY(dset2, H5I_INVALID_HID, "H5Ropen_object"); @@ -796,16 +793,16 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) } H5E_END_TRY; if(libver_high < H5F_LIBVER_V110) - VERIFY(ret, FAIL, "H5Dread"); + CHECK(ret, FAIL, "H5Dread"); else { CHECK(ret, FAIL, "H5Dread"); /* Try to open objects */ - dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, dapl_id); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); /* Check what H5Rget_obj_type3 function returns */ - ret = H5Rget_obj_type3(&rbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -824,7 +821,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) VERIFY(*tu8, (uint8_t)(i * 3), "Data"); /* Get the hyperslab selection */ - sid2 = H5Ropen_region(&rbuf[0], H5P_DEFAULT, H5P_DEFAULT); + sid2 = H5Ropen_region((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(sid2, H5I_INVALID_HID, "H5Ropen_region"); /* Verify correct hyperslab selected */ @@ -852,7 +849,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Sclose"); /* Get the element selection */ - sid2 = H5Ropen_region(&rbuf[1], H5P_DEFAULT, H5P_DEFAULT); + sid2 = H5Ropen_region((const H5R_ref_t *)&rbuf[1], H5P_DEFAULT, H5P_DEFAULT); CHECK(sid2, H5I_INVALID_HID, "H5Ropen_region"); /* Verify correct elements selected */ @@ -896,7 +893,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Sclose"); /* Get the unlimited selection */ - sid2 = H5Ropen_region(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + sid2 = H5Ropen_region((const H5R_ref_t *)&rbuf[2], H5P_DEFAULT, H5P_DEFAULT); CHECK(sid2, H5I_INVALID_HID, "H5Ropen_region"); /* Verify correct hyperslab selected */ @@ -931,7 +928,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) /* Attempting to retrieve type of object using non-valid refs */ for(j = 0; j < 3; j++) { H5E_BEGIN_TRY { - ret = H5Rget_obj_type3(&nvrbuf[j], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&nvrbuf[j], H5P_DEFAULT, &obj_type); } H5E_END_TRY; VERIFY(ret, FAIL, "H5Rget_obj_type3"); } /* end for */ @@ -1009,8 +1006,8 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) MESSAGE(5, ("Testing 1-D Dataset Region Reference Functions\n")); /* Allocate write & read buffers */ - wbuf = HDcalloc(sizeof(H5R_ref_t), (size_t)SPACE1_DIM1); - rbuf = HDcalloc(sizeof(H5R_ref_t), (size_t)SPACE1_DIM1); + wbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), (size_t)SPACE1_DIM1); + rbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), (size_t)SPACE1_DIM1); dwbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1); drbuf = (uint8_t *)HDcalloc(sizeof(uint8_t), (size_t)SPACE3_DIM1); @@ -1073,7 +1070,7 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) /* Store first dataset region */ ret = H5Rcreate_region(fid1, "/Dataset2", sid3, &wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_region"); - ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -1131,11 +1128,11 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Dread"); /* Try to open objects */ - dset3 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + dset3 = H5Ropen_object((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, dapl_id); CHECK(dset3, H5I_INVALID_HID, "H5Ropen_object"); /* Check what H5Rget_obj_type3 function returns */ - ret = H5Rget_obj_type3(&rbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -1154,7 +1151,7 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) VERIFY(*tu8, (uint8_t)(i * 3), "Data"); /* Get the hyperslab selection */ - sid3 = H5Ropen_region(&rbuf[0], H5P_DEFAULT, H5P_DEFAULT); + sid3 = H5Ropen_region((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(sid3, H5I_INVALID_HID, "H5Ropen_region"); /* Verify correct hyperslab selected */ @@ -1206,7 +1203,7 @@ test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high) CHECK(ret, FAIL, "H5Sclose"); /* Get the element selection */ - sid3 = H5Ropen_region(&rbuf[1], H5P_DEFAULT, H5P_DEFAULT); + sid3 = H5Ropen_region((const H5R_ref_t *)&rbuf[1], H5P_DEFAULT, H5P_DEFAULT); CHECK(sid3, H5I_INVALID_HID, "H5Ropen_region"); /* Verify correct elements selected */ @@ -1316,7 +1313,7 @@ test_reference_obj_deleted(void) /* Create reference to dataset */ ret = H5Rcreate_object(fid1, "/Dataset1", &oref); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&oref, H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&oref, H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -1357,7 +1354,7 @@ test_reference_obj_deleted(void) CHECK(ret, FAIL, "H5Dread"); /* Open deleted dataset object */ - dset2 = H5Ropen_object(&oref, H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&oref, H5P_DEFAULT, H5P_DEFAULT); VERIFY(dset2, H5I_INVALID_HID, "H5Ropen_object"); /* Close Dataset */ @@ -1504,7 +1501,7 @@ test_reference_group(void) CHECK(ret, FAIL, "H5Dread"); /* Dereference to get the group */ - gid = H5Ropen_object(&rref, H5P_DEFAULT, H5P_DEFAULT); + gid = H5Ropen_object((const H5R_ref_t *)&rref, H5P_DEFAULT, H5P_DEFAULT); CHECK(gid, H5I_INVALID_HID, "H5Ropen_object"); /* Iterate through objects in dereferenced group */ @@ -1565,7 +1562,8 @@ test_reference_attr(void) H5R_ref_t ref_wbuf[SPACE1_DIM1], /* Buffer to write to disk */ ref_rbuf[SPACE1_DIM1]; /* Buffer read from disk */ unsigned wbuf[SPACE1_DIM1], rbuf[SPACE1_DIM1]; - unsigned i; /* Local index variables */ + unsigned *tu32; /* Temporary pointer to uint32 data */ + int i; /* Local index variables */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ @@ -1592,8 +1590,8 @@ test_reference_attr(void) attr = H5Acreate2(group, "Attr2", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = (i * 3) + 1; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)((i * 3) + 1); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1611,8 +1609,8 @@ test_reference_attr(void) attr = H5Acreate2(dataset, "Attr1", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = i * 3; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)(i * 3); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1656,8 +1654,8 @@ test_reference_attr(void) attr = H5Acreate2(tid, "Attr3", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = (i * 3) + 2; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)((i * 3) + 2); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1682,28 +1680,28 @@ test_reference_attr(void) /* Create reference to dataset1 attribute */ ret = H5Rcreate_attr(fid, "/Group1/Dataset1", "Attr1", &ref_wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to dataset2 attribute */ ret = H5Rcreate_attr(fid, "/Group1/Dataset2", "Attr1", &ref_wbuf[1]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[1], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[1], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to group attribute */ ret = H5Rcreate_attr(fid, "/Group1", "Attr2", &ref_wbuf[2]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[2], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[2], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); /* Create reference to named datatype attribute */ ret = H5Rcreate_attr(fid, "/Group1/Datatype1", "Attr3", &ref_wbuf[3]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[3], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[3], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); @@ -1736,7 +1734,7 @@ test_reference_attr(void) CHECK(ret, FAIL, "H5Dread"); /* Open attribute on dataset object */ - attr = H5Ropen_attr(&ref_rbuf[0], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Check information in referenced dataset */ @@ -1750,38 +1748,38 @@ test_reference_attr(void) ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], i * 3, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)(i * 3), "Data"); /* Close dereferenced Dataset */ ret = H5Aclose(attr); CHECK(ret, FAIL, "H5Aclose"); /* Open attribute on group object */ - attr = H5Ropen_attr(&ref_rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[2], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Read from disk */ ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], (i * 3) + 1, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)((i * 3) + 1), "Data"); /* Close attribute */ ret = H5Aclose(attr); CHECK(ret, FAIL, "H5Aclose"); /* Open attribute on named datatype object */ - attr = H5Ropen_attr(&ref_rbuf[3], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[3], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Read from disk */ ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], (i * 3) + 2, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)((i * 3) + 2), "Data"); /* Close attribute */ ret = H5Aclose(attr); @@ -1828,7 +1826,8 @@ test_reference_external(void) H5R_ref_t ref_wbuf[SPACE1_DIM1], /* Buffer to write to disk */ ref_rbuf[SPACE1_DIM1]; /* Buffer read from disk */ unsigned wbuf[SPACE1_DIM1], rbuf[SPACE1_DIM1]; - unsigned i; /* Local index variables */ + unsigned *tu32; /* Temporary pointer to uint32 data */ + int i; /* Local index variables */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ @@ -1855,8 +1854,8 @@ test_reference_external(void) attr = H5Acreate2(group, "Attr2", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = (i * 3) + 1; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)((i * 3) + 1); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1874,8 +1873,8 @@ test_reference_external(void) attr = H5Acreate2(dataset, "Attr1", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = i * 3; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)(i * 3); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1919,8 +1918,8 @@ test_reference_external(void) attr = H5Acreate2(tid, "Attr3", H5T_NATIVE_UINT, sid, H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Acreate2"); - for(i = 0; i < SPACE1_DIM1; i++) - wbuf[i] = (i * 3) + 2; + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)((i * 3) + 2); /* Write attribute to disk */ ret = H5Awrite(attr, H5T_NATIVE_UINT, wbuf); @@ -1941,28 +1940,28 @@ test_reference_external(void) /* Create reference to dataset1 attribute */ ret = H5Rcreate_attr(fid1, "/Group1/Dataset1", "Attr1", &ref_wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to dataset2 attribute */ ret = H5Rcreate_attr(fid1, "/Group1/Dataset2", "Attr1", &ref_wbuf[1]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[1], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[1], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Create reference to group attribute */ ret = H5Rcreate_attr(fid1, "/Group1", "Attr2", &ref_wbuf[2]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[2], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[2], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); /* Create reference to named datatype attribute */ ret = H5Rcreate_attr(fid1, "/Group1/Datatype1", "Attr3", &ref_wbuf[3]); CHECK(ret, FAIL, "H5Rcreate_attr"); - ret = H5Rget_obj_type3(&ref_wbuf[3], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&ref_wbuf[3], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); @@ -2015,7 +2014,7 @@ test_reference_external(void) CHECK(ret, FAIL, "H5Dread"); /* Open attribute on dataset object */ - attr = H5Ropen_attr(&ref_rbuf[0], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Check information in referenced dataset */ @@ -2029,38 +2028,38 @@ test_reference_external(void) ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], i * 3, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)(i * 3), "Data"); /* Close dereferenced Dataset */ ret = H5Aclose(attr); CHECK(ret, FAIL, "H5Aclose"); /* Open attribute on group object */ - attr = H5Ropen_attr(&ref_rbuf[2], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[2], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Read from disk */ ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], (i * 3) + 1, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)((i * 3) + 1), "Data"); /* Close attribute */ ret = H5Aclose(attr); CHECK(ret, FAIL, "H5Aclose"); /* Open attribute on named datatype object */ - attr = H5Ropen_attr(&ref_rbuf[3], H5P_DEFAULT, H5P_DEFAULT); + attr = H5Ropen_attr((const H5R_ref_t *)&ref_rbuf[3], H5P_DEFAULT, H5P_DEFAULT); CHECK(attr, H5I_INVALID_HID, "H5Ropen_attr"); /* Read from disk */ ret = H5Aread(attr, H5T_NATIVE_UINT, rbuf); CHECK(ret, FAIL, "H5Aread"); - for(i = 0; i < SPACE1_DIM1; i++) - VERIFY(rbuf[i], (i * 3) + 2, "Data"); + for(tu32 = (unsigned *)rbuf, i = 0; i < SPACE1_DIM1; i++, tu32++) + VERIFY(*tu32, (uint32_t)((i * 3) + 2), "Data"); /* Close attribute */ ret = H5Aclose(attr); @@ -2103,7 +2102,7 @@ test_reference_compat_conv(void) hid_t tid1, tid2; /* Datatype ID */ hsize_t dims1[] = {SPACE1_DIM1}, dims2[] = {SPACE2_DIM1, SPACE2_DIM2}, - dims3[] = {2}; + dims3[] = {SPACE1_DIM1}; /* Purposedly set dimension larger to test NULL references */ hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ hsize_t stride[SPACE2_RANK];/* Stride of hyperslab */ hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ @@ -2122,9 +2121,9 @@ test_reference_compat_conv(void) /* Allocate write & read buffers */ wbuf_obj = (hobj_ref_t *)HDcalloc(sizeof(hobj_ref_t), SPACE1_DIM1); - rbuf_obj = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - wbuf_reg = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), 2); - rbuf_reg = HDcalloc(sizeof(H5R_ref_t), 2); + rbuf_obj = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); + wbuf_reg = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1); + rbuf_reg = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); /* Create file */ fid1 = H5Fcreate(FILE_REF_COMPAT, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -2287,43 +2286,43 @@ test_reference_compat_conv(void) CHECK(ret, FAIL, "H5Dread"); /* Verify type of objects pointed at */ - ret = H5Rget_obj_type3(&rbuf_obj[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_obj[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); - ret = H5Rget_obj_type3(&rbuf_obj[1], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_obj[1], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); - ret = H5Rget_obj_type3(&rbuf_obj[2], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_obj[2], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3"); - ret = H5Rget_obj_type3(&rbuf_obj[3], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_obj[3], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3"); /* Make sure the referenced objects can be opened */ - dset2 = H5Ropen_object(&rbuf_obj[0], H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf_obj[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Dclose(dset2); CHECK(ret, FAIL, "H5Dclose"); - dset2 = H5Ropen_object(&rbuf_obj[1], H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf_obj[1], H5P_DEFAULT, H5P_DEFAULT); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Dclose(dset2); CHECK(ret, FAIL, "H5Dclose"); - group2 = H5Ropen_object(&rbuf_obj[2], H5P_DEFAULT, H5P_DEFAULT); + group2 = H5Ropen_object((const H5R_ref_t *)&rbuf_obj[2], H5P_DEFAULT, H5P_DEFAULT); CHECK(group2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Gclose(group2); CHECK(ret, FAIL, "H5Gclose"); - tid2 = H5Ropen_object(&rbuf_obj[3], H5P_DEFAULT, H5P_DEFAULT); + tid2 = H5Ropen_object((const H5R_ref_t *)&rbuf_obj[3], H5P_DEFAULT, H5P_DEFAULT); CHECK(tid2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Tclose(tid2); @@ -2343,22 +2342,22 @@ test_reference_compat_conv(void) CHECK(ret, FAIL, "H5Dread"); /* Verify type of objects pointed at */ - ret = H5Rget_obj_type3(&rbuf_reg[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_reg[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); - ret = H5Rget_obj_type3(&rbuf_reg[1], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&rbuf_reg[1], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); /* Make sure the referenced objects can be opened */ - dset2 = H5Ropen_object(&rbuf_reg[0], H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf_reg[0], H5P_DEFAULT, H5P_DEFAULT); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Dclose(dset2); CHECK(ret, FAIL, "H5Dclose"); - dset2 = H5Ropen_object(&rbuf_reg[1], H5P_DEFAULT, H5P_DEFAULT); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf_reg[1], H5P_DEFAULT, H5P_DEFAULT); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); ret = H5Dclose(dset2); @@ -2415,8 +2414,8 @@ test_reference_perf(void) *rbuf_deprec;/* deprecated references */ hdset_reg_ref_t *wbuf_reg_deprec, /* deprecated references*/ *rbuf_reg_deprec; /* deprecated references*/ - unsigned *ibuf, *obuf; - unsigned i, j; /* Counters */ + unsigned *tu32; /* Temporary pointer to uint32 data */ + int i, j; /* Counters */ H5O_type_t obj_type; /* Object type */ herr_t ret; /* Generic return value */ double t1, t2, t; /* Timers */ @@ -2425,20 +2424,18 @@ test_reference_perf(void) MESSAGE(5, ("Testing Object Reference Performance\n")); /* Allocate write & read buffers */ - wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); - ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1); - wbuf_deprec = (hobj_ref_t *)HDcalloc(sizeof(hobj_ref_t), SPACE1_DIM1); - rbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - rbuf_deprec = (hobj_ref_t *)HDcalloc(sizeof(hobj_ref_t), SPACE1_DIM1); - tbuf = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - wbuf_reg = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - rbuf_reg = (H5R_ref_t *)HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1); - wbuf_reg_deprec = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1); - rbuf_reg_deprec = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1); - - for(i = 0; i < SPACE1_DIM1; i++) - obuf[i] = i * 3; + wbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + wbuf_deprec = (hobj_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)), SPACE1_DIM1); + rbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + rbuf_deprec = (hobj_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)), SPACE1_DIM1); + tbuf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + wbuf_reg = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + rbuf_reg = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), SPACE1_DIM1); + wbuf_reg_deprec = (hdset_reg_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(hdset_reg_ref_t)), SPACE1_DIM1); + rbuf_reg_deprec = (hdset_reg_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(hdset_reg_ref_t)), SPACE1_DIM1); + + for(tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++) + *tu32++ = (unsigned)i * 3; /* Create file */ fid1 = H5Fcreate(FILE_REF_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); @@ -2461,7 +2458,7 @@ test_reference_perf(void) CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2"); /* Write selection to disk */ - ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf); + ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf); CHECK(ret, FAIL, "H5Dwrite"); /* Close Dataset */ @@ -2521,7 +2518,7 @@ test_reference_perf(void) /* Create reference to dataset */ ret = H5Rcreate_object(fid1, "/Group1/Dataset1", &wbuf[0]); CHECK(ret, FAIL, "H5Rcreate_object"); - ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type); + ret = H5Rget_obj_type3((const H5R_ref_t *)&wbuf[0], H5P_DEFAULT, &obj_type); CHECK(ret, FAIL, "H5Rget_obj_type3"); VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3"); @@ -2673,7 +2670,7 @@ test_reference_perf(void) CHECK(ret, FAIL, "H5Dread"); /* Open dataset object */ - dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id); + dset2 = H5Ropen_object((const H5R_ref_t *)&rbuf[0], H5P_DEFAULT, dapl_id); CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object"); /* Check information in referenced dataset */ @@ -2684,11 +2681,11 @@ test_reference_perf(void) VERIFY(ret, dims1[0], "H5Sget_simple_extent_npoints"); /* Read from disk */ - ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf); + ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, tbuf); CHECK(ret, FAIL, "H5Dread"); - for(i = 0; i < dims1[0]; i++) - VERIFY(ibuf[i], i * 3, "Data"); + for(tu32 = (unsigned *)tbuf, i = 0; i < (int)dims1[0]; i++, tu32++) + VERIFY(*tu32, (uint32_t)(i*3), "Data"); /* Close dereferenced Dataset */ ret = H5Dclose(dset2); @@ -2770,7 +2767,7 @@ test_reference_perf(void) CHECK(ret, FAIL, "H5Fclose"); /* Destroy references */ - for(j = 0; j < dims1[0]; j++) { + for(j = 0; j < (int)dims1[0]; j++) { ret = H5Rdestroy(&wbuf[j]); CHECK(ret, FAIL, "H5Rdestroy"); ret = H5Rdestroy(&wbuf_reg[j]); @@ -2791,8 +2788,6 @@ test_reference_perf(void) HDfree(wbuf_reg_deprec); HDfree(rbuf_reg_deprec); HDfree(tbuf); - HDfree(ibuf); - HDfree(obuf); } /* test_reference_perf() */ /**************************************************************** diff --git a/test/trefer_deprec.c b/test/trefer_deprec.c index 1b77e9c..949f41b 100644 --- a/test/trefer_deprec.c +++ b/test/trefer_deprec.c @@ -517,7 +517,7 @@ test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high) hsize_t high[SPACE2_RANK]; /* Selection bounds */ hdset_reg_ref_t *wbuf, /* buffer to write to disk */ *rbuf; /* buffer read from disk */ - hdset_reg_ref_t nvrbuf[3]={{{0}},{{101}},{{255}}}; /* buffer with non-valid refs */ + hdset_reg_ref_t nvrbuf[3]={{0},{101},{255}}; /* buffer with non-valid refs */ uint8_t *dwbuf, /* Buffer for writing numeric data to disk */ *drbuf; /* Buffer for reading numeric data from disk */ uint8_t *tu8; /* Temporary pointer to uint8 data */ diff --git a/test/tvlstr.c b/test/tvlstr.c index cc01084..731270c 100644 --- a/test/tvlstr.c +++ b/test/tvlstr.c @@ -861,12 +861,12 @@ static void test_write_same_element(void) hid_t file1, dataset1; hid_t mspace, fspace, dtype; hsize_t fdim[] = {SPACE1_DIM1}; - const char *val[SPACE1_DIM1] = {"But", "reuniting", "is a", "great joy"}; + char *val[SPACE1_DIM1] = {"But", "reuniting", "is a", "great joy"}; hsize_t marray[] = {NUMP}; hsize_t coord[SPACE1_RANK][NUMP]; herr_t ret; - const char *wdata[SPACE1_DIM1] = {"Parting", "is such a", "sweet", "sorrow."}; + char *wdata[SPACE1_DIM1] = {"Parting", "is such a", "sweet", "sorrow."}; file1 = H5Fcreate(DATAFILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); CHECK(file1, FAIL, "H5Fcreate"); diff --git a/test/vds_swmr.h b/test/vds_swmr.h index 18d6b35..eb2dcf4 100644 --- a/test/vds_swmr.h +++ b/test/vds_swmr.h @@ -84,17 +84,31 @@ #define N_PLANES_TO_WRITE 25 /* Planes */ -extern hsize_t PLANES[N_SOURCES][RANK]; +static hsize_t PLANES[N_SOURCES][RANK] = { + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH}, + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH}, + {1, SM_HEIGHT, WIDTH}, + {1, LG_HEIGHT, WIDTH} +}; /* File names for source datasets */ -extern char FILE_NAMES[N_SOURCES][NAME_LEN]; +static char FILE_NAMES[N_SOURCES][NAME_LEN] = { + {"vds_swmr_src_a.h5"}, + {"vds_swmr_src_b.h5"}, + {"vds_swmr_src_c.h5"}, + {"vds_swmr_src_d.h5"}, + {"vds_swmr_src_e.h5"}, + {"vds_swmr_src_f.h5"} +}; /* VDS file name */ -extern char VDS_FILE_NAME[NAME_LEN]; +static char VDS_FILE_NAME[NAME_LEN] = "vds_swmr.h5"; /* Dataset names */ -extern char SOURCE_DSET_PATH[NAME_LEN]; -extern char VDS_DSET_NAME[NAME_LEN]; +static char SOURCE_DSET_PATH[NAME_LEN] = "/source_dset"; +static char VDS_DSET_NAME[NAME_LEN] = "vds_dset"; /* Fill values */ #endif /* VDS_SWMR_H */ diff --git a/test/vds_swmr_common.c b/test/vds_swmr_common.c deleted file mode 100644 index d2b4bd6..0000000 --- a/test/vds_swmr_common.c +++ /dev/null @@ -1,36 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * - * If you do not have access to either file, you may request a copy from * - * help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "vds_swmr.h" - -hsize_t PLANES[N_SOURCES][RANK] = { - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH}, - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH}, - {1, SM_HEIGHT, WIDTH}, - {1, LG_HEIGHT, WIDTH} -}; - -char FILE_NAMES[N_SOURCES][NAME_LEN] = { - {"vds_swmr_src_a.h5"}, - {"vds_swmr_src_b.h5"}, - {"vds_swmr_src_c.h5"}, - {"vds_swmr_src_d.h5"}, - {"vds_swmr_src_e.h5"}, - {"vds_swmr_src_f.h5"} -}; - -char VDS_FILE_NAME[NAME_LEN] = "vds_swmr.h5"; -char SOURCE_DSET_PATH[NAME_LEN] = "/source_dset"; -char VDS_DSET_NAME[NAME_LEN] = "vds_dset"; diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index a4c4dd0..b22af18 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -258,8 +258,6 @@ free_exclude_path_list(diff_opt_t *opts) * Parameter: * table_out [OUT] : return the list *------------------------------------------------------------------------*/ -#pragma GCC diagnostic push -#pragma GCC diagnostic warning "-Wunused-but-set-variable" static void build_match_list (const char *objname1, trav_info_t *info1, const char *objname2, trav_info_t *info2, trav_table_t ** table_out, diff_opt_t *opts) @@ -376,7 +374,6 @@ done: *table_out = table; h5difftrace("build_match_list finish\n"); } -#pragma GCC diagnostic pop /*------------------------------------------------------------------------- diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index c952ec7..c83b88d 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -2251,9 +2251,6 @@ static hsize_t character_compare(char *mem1, char *mem2, hsize_t i, size_t u, *------------------------------------------------------------------------- */ -#pragma GCC diagnostic push -#pragma GCC diagnostic warning "-Wunused-but-set-variable" - static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, hsize_t i, int rank, hsize_t *dims, hsize_t *acc, hsize_t *pos, diff_opt_t *opts, const char *obj1, const char *obj2, int *ph) { @@ -2314,7 +2311,6 @@ static hsize_t character_compare_opt(unsigned char *mem1, unsigned char *mem2, return nfound; } -#pragma GCC diagnostic pop /*------------------------------------------------------------------------- * Function: diff_float diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index fdf2335..7b47f4d 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -1279,7 +1279,7 @@ done: int h5tools_set_configured_fapl(hid_t fapl_id, const char vfd_name[], - void *fapl_t_ptr H5_ATTR_UNUSED) + void *fapl_t_ptr) { int ret_value = 1; diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c index 65c2359..1eef5ab 100644 --- a/tools/src/h5import/h5import.c +++ b/tools/src/h5import/h5import.c @@ -1428,7 +1428,7 @@ static int processConfigurationFile(char *infile, struct Input *in) /* Initialize machine endian */ volatile uint32_t ibyte=0x01234567; /* 0 for big endian, 1 for little endian. */ - if ((*((volatile uint8_t*)(&ibyte))) == 0x67) { + if ((*((uint8_t*)(&ibyte))) == 0x67) { if ((kindex = OutputByteOrderStrToInt("LE")) == -1) { (void) HDfprintf(stderr, "%s", err11e); return (-1); diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c index 16899a3..c628beb 100644 --- a/tools/src/h5repack/h5repack_main.c +++ b/tools/src/h5repack/h5repack_main.c @@ -281,7 +281,7 @@ int read_info(const char *filename, pack_opt_t *options) char comp_info[1024]; FILE *fp = NULL; char c; - int i; + int i, rc = 1; int ret_value = EXIT_SUCCESS; if (NULL == (fp = HDfopen(filename, "r"))) { @@ -412,7 +412,7 @@ set_sort_order(const char *form) static int parse_command_line(int argc, const char **argv, pack_opt_t* options) { - int bound, opt; + int opt; int ret_value = 0; /* parse command line options */ @@ -492,21 +492,19 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) break; case 'j': - bound = HDatoi(opt_arg); - if (bound < H5F_LIBVER_EARLIEST || bound > H5F_LIBVER_LATEST) { + options->low_bound = (H5F_libver_t)HDatoi(opt_arg); + if (options->low_bound < H5F_LIBVER_EARLIEST || options->low_bound > H5F_LIBVER_LATEST) { error_msg("in parsing low bound\n"); goto done; } - options->low_bound = bound; break; case 'k': - bound = HDatoi(opt_arg); - if (bound < H5F_LIBVER_EARLIEST || bound > H5F_LIBVER_LATEST) { + options->high_bound = (H5F_libver_t)HDatoi(opt_arg); + if (options->high_bound < H5F_LIBVER_EARLIEST || options->high_bound > H5F_LIBVER_LATEST) { error_msg("in parsing high bound\n"); goto done; } - options->high_bound = bound; break; case 'c': diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c index 87ca31c..aaac285 100644 --- a/tools/test/h5repack/h5repackgentest.c +++ b/tools/test/h5repack/h5repackgentest.c @@ -314,6 +314,7 @@ generate_f32le(hbool_t external) { int main(void) { int i = 0; + int ret_value = 0; for (i = 0; i < 2; i++) { hbool_t external = (i & 1) ? TRUE : FALSE; |