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authorMohamad Chaarawi <chaarawi@hdfgroup.org>2012-10-03 04:36:22 (GMT)
committerMohamad Chaarawi <chaarawi@hdfgroup.org>2012-10-03 04:36:22 (GMT)
commitd1a4ff0b3056b323ba4ae9e8b03f86115d7456e7 (patch)
treef67b3e7faeefc698aa51e12ec19c0be0583f5f96
parentb151281b3897ae367aa520abe2877bc7183f4648 (diff)
parent3e59374ccd0c7cbb671dc72c34ec1a6a9123bc5b (diff)
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[svn-r22856] merge trunk up to 22855.
-rw-r--r--MANIFEST3
-rw-r--r--Makefile.in2
-rw-r--r--README.txt2
-rw-r--r--c++/Makefile.in2
-rw-r--r--c++/examples/Makefile.in2
-rw-r--r--c++/src/CMakeLists.txt2
-rw-r--r--c++/src/H5AbstractDs.cpp5
-rw-r--r--c++/src/H5AbstractDs.h2
-rw-r--r--c++/src/H5ArrayType.h2
-rw-r--r--c++/src/H5AtomType.h2
-rw-r--r--c++/src/H5Attribute.cpp25
-rw-r--r--c++/src/H5Attribute.h6
-rw-r--r--c++/src/H5Classes.h1
-rw-r--r--c++/src/H5CompType.h20
-rw-r--r--c++/src/H5Cpp.h1
-rw-r--r--c++/src/H5CppDoc.h2
-rw-r--r--c++/src/H5DataSet.cpp48
-rw-r--r--c++/src/H5DataSet.h9
-rw-r--r--c++/src/H5DataSpace.h2
-rw-r--r--c++/src/H5DataType.cpp45
-rw-r--r--c++/src/H5DataType.h7
-rw-r--r--c++/src/H5DcreatProp.h2
-rw-r--r--c++/src/H5DxferProp.h2
-rw-r--r--c++/src/H5EnumType.h2
-rw-r--r--c++/src/H5FaccProp.h2
-rw-r--r--c++/src/H5FcreatProp.h2
-rw-r--r--c++/src/H5File.cpp237
-rw-r--r--c++/src/H5File.h33
-rw-r--r--c++/src/H5FloatType.h2
-rw-r--r--c++/src/H5Group.cpp47
-rw-r--r--c++/src/H5Group.h7
-rw-r--r--c++/src/H5IdComponent.h2
-rw-r--r--c++/src/H5IntType.h2
-rw-r--r--c++/src/H5Location.cpp669
-rw-r--r--c++/src/H5Location.h146
-rw-r--r--c++/src/H5Object.cpp514
-rw-r--r--c++/src/H5Object.h93
-rw-r--r--c++/src/H5PredType.h2
-rw-r--r--c++/src/H5PropList.h2
-rw-r--r--c++/src/H5StrType.h2
-rw-r--r--c++/src/H5VarLenType.h2
-rw-r--r--c++/src/Makefile.am17
-rw-r--r--c++/src/Makefile.in34
-rw-r--r--c++/src/h5c++.in4
-rw-r--r--c++/test/Makefile.in2
-rw-r--r--c++/test/dsets.cpp11
-rw-r--r--c++/test/h5cpputil.cpp1
-rw-r--r--c++/test/tattr.cpp135
-rw-r--r--c++/test/tfile.cpp137
-rw-r--r--c++/test/th5s.cpp2
-rw-r--r--c++/test/trefer.cpp44
-rw-r--r--config/ibm-aix8
-rw-r--r--config/lt_vers.am2
-rwxr-xr-xconfigure39
-rw-r--r--configure.ac17
-rw-r--r--examples/Makefile.in2
-rw-r--r--fortran/Makefile.in2
-rw-r--r--fortran/examples/Makefile.in2
-rw-r--r--fortran/src/H5FDmpiof.c37
-rw-r--r--fortran/src/H5FDmpioff.f9045
-rw-r--r--fortran/src/H5Gff.f902
-rw-r--r--fortran/src/H5Of.c655
-rw-r--r--fortran/src/H5Off.f90468
-rw-r--r--fortran/src/H5Off_F03.f90232
-rw-r--r--fortran/src/H5Pff.f902
-rw-r--r--fortran/src/H5Rf.c41
-rw-r--r--fortran/src/H5Rff.f9061
-rw-r--r--fortran/src/H5Rff_F03.f90174
-rw-r--r--fortran/src/H5Rff_F90.f9065
-rw-r--r--fortran/src/H5_f.c6
-rw-r--r--fortran/src/H5f90global.f9014
-rw-r--r--fortran/src/H5f90kit.c2
-rw-r--r--fortran/src/H5f90proto.h37
-rw-r--r--fortran/src/H5match_types.c24
-rw-r--r--fortran/src/Makefile.in4
-rw-r--r--fortran/src/h5fc.in4
-rw-r--r--fortran/src/hdf5_fortrandll.def20
-rw-r--r--fortran/src/phdf5_fortrandll.def5
-rw-r--r--fortran/test/CMakeLists.txt1
-rw-r--r--fortran/test/Makefile.am2
-rw-r--r--fortran/test/Makefile.in8
-rw-r--r--fortran/test/fortranlib_test_1_8.f90141
-rw-r--r--fortran/test/fortranlib_test_F03.f9037
-rw-r--r--fortran/test/tH5A.f904
-rw-r--r--fortran/test/tH5O.f90255
-rw-r--r--fortran/test/tH5O_F03.f90547
-rw-r--r--fortran/test/tH5T.f904
-rw-r--r--fortran/test/tH5T_F03.f90307
-rw-r--r--fortran/testpar/Makefile.in2
-rw-r--r--fortran/testpar/hyper.f9019
-rw-r--r--hl/Makefile.in2
-rw-r--r--hl/c++/Makefile.in2
-rw-r--r--hl/c++/examples/Makefile.in2
-rw-r--r--hl/c++/src/Makefile.in4
-rw-r--r--hl/c++/test/Makefile.in2
-rw-r--r--hl/examples/Makefile.in2
-rw-r--r--hl/fortran/Makefile.in2
-rw-r--r--hl/fortran/examples/Makefile.in2
-rw-r--r--hl/fortran/src/Makefile.in4
-rw-r--r--hl/fortran/test/Makefile.in2
-rw-r--r--hl/src/Makefile.in4
-rw-r--r--hl/test/Makefile.in2
-rw-r--r--hl/test/test_image.c2
-rw-r--r--hl/tools/Makefile.in2
-rw-r--r--hl/tools/gif2h5/Makefile.in2
-rw-r--r--perform/Makefile.am3
-rw-r--r--perform/Makefile.in32
-rw-r--r--release_docs/RELEASE.txt8
-rw-r--r--src/CMakeLists.txt1
-rw-r--r--src/H5public.h4
-rw-r--r--src/Makefile.in4
-rw-r--r--test/CMakeLists.txt44
-rw-r--r--test/Makefile.in2
-rw-r--r--testpar/CMakeLists.txt1
-rw-r--r--testpar/Makefile.in2
-rw-r--r--tools/Makefile.in2
-rw-r--r--tools/h5copy/Makefile.in2
-rw-r--r--tools/h5diff/Makefile.in2
-rw-r--r--tools/h5dump/CMakeLists.txt6
-rw-r--r--tools/h5dump/Makefile.in2
-rw-r--r--tools/h5dump/testh5dump.sh.in6
-rw-r--r--tools/h5import/Makefile.in2
-rw-r--r--tools/h5jam/Makefile.in2
-rw-r--r--tools/h5ls/Makefile.in2
-rw-r--r--tools/h5repack/Makefile.in2
-rw-r--r--tools/h5stat/Makefile.in2
-rw-r--r--tools/lib/Makefile.in2
-rw-r--r--tools/misc/Makefile.in2
-rw-r--r--tools/misc/h5cc.in4
-rw-r--r--vms/src/h5pubconf.h6
-rw-r--r--windows/src/H5pubconf.h6
131 files changed, 4255 insertions, 1576 deletions
diff --git a/MANIFEST b/MANIFEST
index 6455493..5616360 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -349,6 +349,7 @@
./fortran/test/tH5I.f90
./fortran/test/tH5L_F03.f90
./fortran/test/tH5O.f90
+./fortran/test/tH5O_F03.f90
./fortran/test/tH5P_F03.f90
./fortran/test/tH5P.f90
./fortran/test/tH5R.f90
@@ -441,6 +442,8 @@
./c++/src/H5IntType.h
./c++/src/H5Library.cpp
./c++/src/H5Library.h
+./c++/src/H5Location.cpp
+./c++/src/H5Location.h
./c++/src/H5Object.cpp
./c++/src/H5Object.h
./c++/src/H5PredType.cpp
diff --git a/Makefile.in b/Makefile.in
index 34dc91d..1246a41 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -245,6 +245,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -259,6 +260,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/README.txt b/README.txt
index 62a6e40..2a17830 100644
--- a/README.txt
+++ b/README.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.9.131 currently under development
+HDF5 version 1.9.132 currently under development
Please refer to the release_docs/INSTALL file for installation instructions.
------------------------------------------------------------------------------
diff --git a/c++/Makefile.in b/c++/Makefile.in
index fe9ce2b..c2efdee 100644
--- a/c++/Makefile.in
+++ b/c++/Makefile.in
@@ -210,6 +210,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -224,6 +225,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in
index 021edca..b4a5590 100644
--- a/c++/examples/Makefile.in
+++ b/c++/examples/Makefile.in
@@ -177,6 +177,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -191,6 +192,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 375bd4a..d983d1e 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -40,6 +40,7 @@ SET (CPP_SRCS
${HDF5_CPP_SRC_SOURCE_DIR}/H5IdComponent.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.cpp
+ ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5PredType.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5PropList.cpp
@@ -74,6 +75,7 @@ SET (CPP_HDRS
${HDF5_CPP_SRC_SOURCE_DIR}/H5Include.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.h
+ ${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5PredType.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5PropList.h
diff --git a/c++/src/H5AbstractDs.cpp b/c++/src/H5AbstractDs.cpp
index 9cf1ee8..e6cacf9 100644
--- a/c++/src/H5AbstractDs.cpp
+++ b/c++/src/H5AbstractDs.cpp
@@ -25,11 +25,6 @@
#include "H5CommonFG.h"
#include "H5Alltypes.h"
-#include <iostream> // remove when done
-
- using std::cerr;
- using std::endl;
-
#ifndef H5_NO_NAMESPACE
namespace H5 {
#endif
diff --git a/c++/src/H5AbstractDs.h b/c++/src/H5AbstractDs.h
index 1d04d6c..354b47b 100644
--- a/c++/src/H5AbstractDs.h
+++ b/c++/src/H5AbstractDs.h
@@ -65,7 +65,7 @@ class H5_DLLCPP AbstractDs {
// dataset - pure virtual.
virtual hsize_t getStorageSize() const = 0;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass() const = 0;
// Copy constructor
diff --git a/c++/src/H5ArrayType.h b/c++/src/H5ArrayType.h
index d50017a..7daafed 100644
--- a/c++/src/H5ArrayType.h
+++ b/c++/src/H5ArrayType.h
@@ -36,7 +36,7 @@ class H5_DLLCPP ArrayType : public DataType {
// Returns the sizes of dimensions of this array datatype.
int getArrayDims(hsize_t* dims);
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("ArrayType"); }
// Copy constructor: makes copy of the original object.
diff --git a/c++/src/H5AtomType.h b/c++/src/H5AtomType.h
index 1ddfd7d..25770f5 100644
--- a/c++/src/H5AtomType.h
+++ b/c++/src/H5AtomType.h
@@ -57,7 +57,7 @@ class H5_DLLCPP AtomType : public DataType {
// Sets the total size for an atomic datatype.
void setSize( size_t size ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("AtomType"); }
// Copy constructor - makes copy of the original object
diff --git a/c++/src/H5Attribute.cpp b/c++/src/H5Attribute.cpp
index 226ae5c..120ed39 100644
--- a/c++/src/H5Attribute.cpp
+++ b/c++/src/H5Attribute.cpp
@@ -385,6 +385,31 @@ hsize_t Attribute::getStorageSize() const
}
//--------------------------------------------------------------------------
+// Function: Attribute::flush
+///\brief Flushes all buffers associated with a file specified by
+/// this attribute, to disk.
+///\param scope - IN: Specifies the scope of the flushing action,
+/// which can be either of these values:
+/// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file
+/// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file
+///\exception H5::AttributeIException
+///\par Description
+/// This attribute is used to identify the file to be flushed.
+// Programmer Binh-Minh Ribler - 2012
+// Modification
+// Sep 2012 - BMR
+// Duplicated from H5Location
+//--------------------------------------------------------------------------
+void Attribute::flush(H5F_scope_t scope) const
+{
+ herr_t ret_value = H5Fflush(getId(), scope);
+ if( ret_value < 0 )
+ {
+ throw AttributeIException("Attribute::flush", "H5Fflush failed");
+ }
+}
+
+//--------------------------------------------------------------------------
// Function: Attribute::getId
// Purpose: Get the id of this attribute
// Description:
diff --git a/c++/src/H5Attribute.h b/c++/src/H5Attribute.h
index 284e5bc..dd37a99 100644
--- a/c++/src/H5Attribute.h
+++ b/c++/src/H5Attribute.h
@@ -51,7 +51,11 @@ class H5_DLLCPP Attribute : public AbstractDs, public IdComponent {
void write(const DataType& mem_type, const void *buf ) const;
void write(const DataType& mem_type, const H5std_string& strg ) const;
- // Returns this class name
+ // Flushes all buffers associated with the file specified by this
+ // attribute to disk
+ void flush( H5F_scope_t scope ) const;
+
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("Attribute"); }
// Creates a copy of an existing attribute using the attribute id
diff --git a/c++/src/H5Classes.h b/c++/src/H5Classes.h
index f691548..c3b61ca 100644
--- a/c++/src/H5Classes.h
+++ b/c++/src/H5Classes.h
@@ -22,6 +22,7 @@ namespace H5 {
#endif
class Exception;
class IdComponent;
+ class H5Location;
class H5Object;
class PropList;
class FileCreatPropList;
diff --git a/c++/src/H5CompType.h b/c++/src/H5CompType.h
index ae030ee..9b2b572 100644
--- a/c++/src/H5CompType.h
+++ b/c++/src/H5CompType.h
@@ -26,12 +26,21 @@ namespace H5 {
class H5_DLLCPP CompType : public DataType {
public:
+ // Default constructor
+ CompType();
+
+ // Creates a compound datatype using an existing id
+ CompType( const hid_t existing_id );
+
// Creates a new compound datatype, given the type's size
CompType( size_t size ); // H5Tcreate
// Gets the compound datatype of the specified dataset
CompType( const DataSet& dataset ); // H5Dget_type
+ // Copy constructor - makes a copy of original object
+ CompType( const CompType& original );
+
// Returns the type class of the specified member of this compound
// datatype. It provides to the user a way of knowing what type
// to create another datatype of the same class
@@ -88,18 +97,9 @@ class H5_DLLCPP CompType : public DataType {
// Recursively removes padding from within this compound datatype.
void pack() const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("CompType"); }
- // Default constructor
- CompType();
-
- // Creates a compound datatype using an existing id
- CompType( const hid_t existing_id );
-
- // Copy constructor - makes a copy of original object
- CompType( const CompType& original );
-
// Noop destructor.
virtual ~CompType();
diff --git a/c++/src/H5Cpp.h b/c++/src/H5Cpp.h
index 75d82ba..ddf4f19 100644
--- a/c++/src/H5Cpp.h
+++ b/c++/src/H5Cpp.h
@@ -22,6 +22,7 @@
#include "H5IdComponent.h"
#include "H5DataSpace.h"
#include "H5PropList.h"
+#include "H5Location.h"
#include "H5Object.h"
#include "H5AbstractDs.h"
#include "H5Attribute.h"
diff --git a/c++/src/H5CppDoc.h b/c++/src/H5CppDoc.h
index b974238..ab3fa79 100644
--- a/c++/src/H5CppDoc.h
+++ b/c++/src/H5CppDoc.h
@@ -30,7 +30,7 @@
* It is assumed that the user has knowledge of the HDF5 file format
* and its components. If you are not familiar with HDF5 file format,
* and would like to find out more, please refer to the HDF5 documentation
- * at http://hdf.ncsa.uiuc.edu/HDF5/doc/H5.intro.html
+ * at http://www.hdfgroup.org/HDF5/doc/index.html
*
* Because the HDF5 library maps very well to
* the object oriented design approach, classes in the C++ API can
diff --git a/c++/src/H5DataSet.cpp b/c++/src/H5DataSet.cpp
index f7aaa72..6a1524d 100644
--- a/c++/src/H5DataSet.cpp
+++ b/c++/src/H5DataSet.cpp
@@ -644,54 +644,6 @@ void DataSet::fillMemBuf(void *buf, DataType& buf_type, DataSpace& space)
}
}
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: DataSet::getObjType
-///\brief Retrieves the type of object that an object reference points to.
-///\param ref_type - IN: Type of reference to query, valid values are:
-/// \li \c H5R_OBJECT - Reference is an object reference.
-/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference.
-///\param ref - IN: Reference to query
-///\return An object type, which can be one of the following:
-/// \li \c H5G_LINK (0) - Object is a symbolic link.
-/// \li \c H5G_GROUP (1) - Object is a group.
-/// \li \c H5G_DATASET (2) - Object is a dataset.
-/// \li \c H5G_TYPE (3) - Object is a named datatype
-///\exception H5::DataSetIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t DataSet::getObjType(void *ref, H5R_type_t ref_type) const
-{
- try {
- return(p_get_obj_type(ref, ref_type));
- }
- catch (IdComponentException E) {
- throw DataSetIException("DataSet::getObjType", E.getDetailMsg());
- }
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-//--------------------------------------------------------------------------
-// Function: DataSet::getRegion
-///\brief Retrieves a dataspace with the region pointed to selected.
-///\param ref - IN: Reference to get region of
-///\param ref_type - IN: Type of reference to get region of - default
-/// to H5R_DATASET_REGION
-///\return DataSpace instance
-///\exception H5::DataSetIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-DataSpace DataSet::getRegion(void *ref, H5R_type_t ref_type) const
-{
- try {
- DataSpace dataspace(p_get_region(ref, ref_type));
- return(dataspace);
- }
- catch (IdComponentException E) {
- throw DataSetIException("DataSet::getRegion", E.getDetailMsg());
- }
-}
-
//--------------------------------------------------------------------------
// Function: DataSet::getId
///\brief Get the id of this dataset.
diff --git a/c++/src/H5DataSet.h b/c++/src/H5DataSet.h
index 3d9183d..54e9d6f 100644
--- a/c++/src/H5DataSet.h
+++ b/c++/src/H5DataSet.h
@@ -76,15 +76,10 @@ class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
// Iterates the selected elements in the specified dataspace - not implemented in C++ style yet
int iterateElems( void* buf, const DataType& type, const DataSpace& space, H5D_operator_t op, void* op_data = NULL );
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
// Retrieves a dataspace with the region pointed to selected.
DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DataSet"); }
// Creates a dataset by way of dereference.
@@ -110,6 +105,7 @@ class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
private:
hid_t id; // HDF5 dataset id
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
// This function contains the common code that is used by
// getTypeClass and various API functions getXxxType
// defined in AbstractDs for generic datatype and specific
@@ -123,6 +119,7 @@ class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
protected:
// Sets the dataset id.
virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
};
#ifndef H5_NO_NAMESPACE
}
diff --git a/c++/src/H5DataSpace.h b/c++/src/H5DataSpace.h
index 80842f7..9afb8ab 100644
--- a/c++/src/H5DataSpace.h
+++ b/c++/src/H5DataSpace.h
@@ -103,7 +103,7 @@ class H5_DLLCPP DataSpace : public IdComponent {
// Sets or resets the size of this dataspace.
void setExtentSimple( int rank, const hsize_t *current_size, const hsize_t *maximum_size = NULL ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DataSpace"); }
// Creates a DataSpace object using an existing dataspace id.
diff --git a/c++/src/H5DataType.cpp b/c++/src/H5DataType.cpp
index 3edb163..99525bc 100644
--- a/c++/src/H5DataType.cpp
+++ b/c++/src/H5DataType.cpp
@@ -679,51 +679,6 @@ bool DataType::isVariableStr() const
}
}
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: DataType::getObjType
-///\brief Retrieves the type of object that an object reference points to.
-///\param ref - IN: Reference to query
-///\param ref_type - IN: Type of reference to query
-///\return Object type, which can be one of the following:
-/// \li \c H5G_LINK Object is a symbolic link.
-/// \li \c H5G_GROUP Object is a group.
-/// \li \c H5G_DATASET Object is a dataset.
-/// \li \c H5G_TYPE Object is a named datatype
-///\exception H5::DataTypeIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t DataType::getObjType(void *ref, H5R_type_t ref_type) const
-{
- try {
- return(p_get_obj_type(ref, ref_type));
- }
- catch (IdComponentException E) {
- throw DataTypeIException(inMemFunc("getObjType"), E.getDetailMsg());
- }
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-//--------------------------------------------------------------------------
-// Function: DataType::getRegion
-///\brief Retrieves a dataspace with the region pointed to selected.
-///\param ref - IN: Reference to get region of
-///\param ref_type - IN: Type of reference to get region of - default
-///\return DataSpace instance
-///\exception H5::DataTypeIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-DataSpace DataType::getRegion(void *ref, H5R_type_t ref_type) const
-{
- try {
- DataSpace dataspace(p_get_region(ref, ref_type));
- return(dataspace);
- }
- catch (IdComponentException E) {
- throw DataTypeIException(inMemFunc("getRegion"), E.getDetailMsg());
- }
-}
-
//--------------------------------------------------------------------------
// Function: DataType::getId
// Purpose: Get the id of this attribute
diff --git a/c++/src/H5DataType.h b/c++/src/H5DataType.h
index 48aeaf8..98514bb 100644
--- a/c++/src/H5DataType.h
+++ b/c++/src/H5DataType.h
@@ -101,15 +101,10 @@ class H5_DLLCPP DataType : public H5Object {
// Checks whether this datatype is a variable-length string.
bool isVariableStr() const;
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
// Retrieves a dataspace with the region pointed to selected.
DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DataType"); }
// Creates a copy of an existing DataType using its id
diff --git a/c++/src/H5DcreatProp.h b/c++/src/H5DcreatProp.h
index b7f5823..ac7664e 100644
--- a/c++/src/H5DcreatProp.h
+++ b/c++/src/H5DcreatProp.h
@@ -107,7 +107,7 @@ class H5_DLLCPP DSetCreatPropList : public PropList {
// Sets SZIP compression method.
void setSzip(unsigned int options_mask, unsigned int pixels_per_block) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DSetCreatPropList"); }
// Copy constructor: creates a copy of a DSetCreatPropList object.
diff --git a/c++/src/H5DxferProp.h b/c++/src/H5DxferProp.h
index 11e15fc..66216d8 100644
--- a/c++/src/H5DxferProp.h
+++ b/c++/src/H5DxferProp.h
@@ -92,7 +92,7 @@ class H5_DLLCPP DSetMemXferPropList : public PropList {
// Determines whether error-detection is enabled for dataset reads.
H5Z_EDC_t getEDCCheck();
- // Returns this class name.
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DSetMemXferPropList"); }
// Copy constructor: makes a copy of a DSetMemXferPropList object.
diff --git a/c++/src/H5EnumType.h b/c++/src/H5EnumType.h
index 2a2c263..914eb66 100644
--- a/c++/src/H5EnumType.h
+++ b/c++/src/H5EnumType.h
@@ -57,7 +57,7 @@ class H5_DLLCPP EnumType : public DataType {
void valueOf( const char* name, void *value ) const;
void valueOf( const H5std_string& name, void *value ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("EnumType"); }
// Default constructor
diff --git a/c++/src/H5FaccProp.h b/c++/src/H5FaccProp.h
index 7f133bb..0c2cc21 100644
--- a/c++/src/H5FaccProp.h
+++ b/c++/src/H5FaccProp.h
@@ -123,7 +123,7 @@ class H5_DLLCPP FileAccPropList : public PropList {
// Returns garbage collecting references setting.
unsigned getGcReferences() const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("FileAccPropList"); }
// Copy constructor: creates a copy of a FileAccPropList object.
diff --git a/c++/src/H5FcreatProp.h b/c++/src/H5FcreatProp.h
index 1aa102f..61074ea 100644
--- a/c++/src/H5FcreatProp.h
+++ b/c++/src/H5FcreatProp.h
@@ -62,7 +62,7 @@ class H5_DLLCPP FileCreatPropList : public PropList {
// indexing chunked datasets.
void setIstorek( unsigned ik ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("FileCreatPropList"); }
// Copy constructor: creates a copy of a FileCreatPropList object.
diff --git a/c++/src/H5File.cpp b/c++/src/H5File.cpp
index da0241f..92c4d32 100644
--- a/c++/src/H5File.cpp
+++ b/c++/src/H5File.cpp
@@ -50,7 +50,7 @@ namespace H5 {
///\brief Default constructor: creates a stub H5File object.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File() : IdComponent(), id(0) {}
+H5File::H5File() : H5Location(), id(0) {}
//--------------------------------------------------------------------------
// Function: H5File overloaded constructor
@@ -79,7 +79,7 @@ H5File::H5File() : IdComponent(), id(0) {}
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5F.html#File-Create
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent(0)
+H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : H5Location(0)
{
p_get_file(name, flags, create_plist, access_plist);
}
@@ -97,7 +97,7 @@ H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& c
/// FileCreatPropList::DEFAULT
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File( const H5std_string& name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent(0)
+H5File::H5File( const H5std_string& name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : H5Location(0)
{
p_get_file(name.c_str(), flags, create_plist, access_plist);
}
@@ -140,34 +140,15 @@ void H5File::p_get_file(const char* name, unsigned int flags, const FileCreatPro
///\param original - IN: H5File instance to copy
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File(const H5File& original) : IdComponent(original)
+H5File::H5File(const H5File& original) : H5Location(original)
{
id = original.getId();
incRefCount(); // increment number of references to this id
}
//--------------------------------------------------------------------------
-// Function: H5File::flush
-///\brief Flushes all buffers associated with a file to disk.
-///\param scope - IN: Specifies the scope of the flushing action,
-/// which can be either of these values:
-/// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file
-/// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file
-///\exception H5::FileIException
-// Programmer Binh-Minh Ribler - Dec. 2005
-//--------------------------------------------------------------------------
-void H5File::flush(H5F_scope_t scope) const
-{
- herr_t ret_value = H5Fflush( id, scope );
- if( ret_value < 0 )
- {
- throw FileIException("H5File::flush", "H5Fflush failed");
- }
-}
-
-//--------------------------------------------------------------------------
// Function: H5File::isHdf5
-///\brief Determines whether a file in HDF5 format.
+///\brief Determines whether a file in HDF5 format. (Static)
///\param name - IN: Name of the file
///\return true if the file is in HDF5 format, and false, otherwise
///\exception H5::FileIException
@@ -191,7 +172,7 @@ bool H5File::isHdf5(const char* name)
//--------------------------------------------------------------------------
// Function: H5File::isHdf5
///\brief This is an overloaded member function, provided for convenience.
-/// It takes an \c H5std_string for \a name.
+/// It takes an \c H5std_string for \a name. (Static)
///\param name - IN: Name of the file - \c H5std_string
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
@@ -269,8 +250,8 @@ void H5File::reOpen()
throw FileIException("H5File::reOpen", close_error.getDetailMsg());
}
- // call C routine to reopen the file - Note: not sure about this
- // does id need to be closed later? which id to be the parameter?
+ // call C routine to reopen the file - Note: not sure about this,
+ // which id to be the parameter when closing?
id = H5Freopen( id );
if( id < 0 ) // Raise exception when H5Freopen returns a neg value
throw FileIException("H5File::reOpen", "H5Freopen failed");
@@ -278,12 +259,10 @@ void H5File::reOpen()
//--------------------------------------------------------------------------
// Function: H5File::reopen
-///\brief Reopens this file.
-///
-///\exception H5::FileIException
-///\par Description
-/// This function will be replaced by the above function \c reOpen
-/// in future releases.
+// Purpose: Reopens this file.
+// Exception H5::FileIException
+// Description
+// This function is replaced by the above function reOpen.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void H5File::reopen()
@@ -490,70 +469,6 @@ void H5File::getVFDHandle(void **file_handle) const
}
//--------------------------------------------------------------------------
-// Function: H5File::getFileName
-///\brief Gets the name of this file.
-///\return File name
-///\exception H5::FileIException
-// Programmer Binh-Minh Ribler - Jul, 2004
-//--------------------------------------------------------------------------
-H5std_string H5File::getFileName() const
-{
- try {
- return(p_get_file_name());
- }
- catch (IdComponentException E) {
- throw FileIException("H5File::getFileName", E.getDetailMsg());
- }
-}
-
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: H5File::getObjType
-///\brief Retrieves the type of object that an object reference points to.
-///\param ref - IN: Reference to query
-///\param ref_type - IN: Type of reference, valid values are:
-/// \li \c H5R_OBJECT - Reference is an object reference
-/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference
-///\return Object type, which can be one of the following:
-/// \li \c H5G_LINK - Object is a symbolic link.
-/// \li \c H5G_GROUP - Object is a group.
-/// \li \c H5G_DATASET - Object is a dataset.
-/// \li \c H5G_TYPE - Object is a named datatype
-///\exception H5::FileIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t H5File::getObjType(void *ref, H5R_type_t ref_type) const
-{
- try {
- return(p_get_obj_type(ref, ref_type));
- }
- catch (IdComponentException E) {
- throw FileIException("H5File::getObjType", E.getDetailMsg());
- }
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-//--------------------------------------------------------------------------
-// Function: H5File::getRegion
-///\brief Retrieves a dataspace with the region pointed to selected.
-///\param ref - IN: Reference to get region of
-///\param ref_type - IN: Type of reference to get region of - default
-///\return DataSpace instance
-///\exception H5::FileIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-DataSpace H5File::getRegion(void *ref, H5R_type_t ref_type) const
-{
- try {
- DataSpace dataspace(p_get_region(ref, ref_type));
- return(dataspace);
- }
- catch (IdComponentException E) {
- throw FileIException("H5File::getRegion", E.getDetailMsg());
- }
-}
-
-//--------------------------------------------------------------------------
// Function: H5File::getFileSize
///\brief Returns the file size of the HDF5 file.
///\return File size
@@ -575,134 +490,6 @@ hsize_t H5File::getFileSize() const
}
//--------------------------------------------------------------------------
-// Function: H5File::p_reference (protected)
-// Purpose Creates a reference to an HDF5 object or a dataset region.
-// Parameters
-// name - IN: Name of the object to be referenced
-// dataspace - IN: Dataspace with selection
-// ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5File::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const
-{
- herr_t ret_value = H5Rcreate(ref, getId(), name, ref_type, space_id);
- if (ret_value < 0)
- {
- throw IdComponentException("", "H5Rcreate failed");
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5File::reference
-///\brief Creates a reference to an HDF5 object or a dataset region.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced
-///\param dataspace - IN: Dataspace with selection
-///\param ref_type - IN: Type of reference to query, valid values are:
-/// \li \c H5R_OBJECT - Reference is an object reference
-/// \li \c H5R_DATASET_REGION - Reference is a dataset region
-/// reference - this is the default
-///\exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5File::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const
-{
- try {
- p_reference(ref, name, dataspace.getId(), ref_type);
- }
- catch (IdComponentException E) {
- throw IdComponentException("H5File::reference", E.getDetailMsg());
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5File::reference
-///\brief This is an overloaded function, provided for your convenience.
-/// It differs from the above function in that it only creates
-/// a reference to an HDF5 object, not to a dataset region.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced - \c char pointer
-///\exception H5::IdComponentException
-///\par Description
-// This function passes H5R_OBJECT and -1 to the protected
-// function for it to pass to the C API H5Rcreate
-// to create a reference to the named object.
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5File::reference(void* ref, const char* name) const
-{
- try {
- p_reference(ref, name, -1, H5R_OBJECT);
- }
- catch (IdComponentException E) {
- throw IdComponentException("H5File::reference", E.getDetailMsg());
- }
-}
-//--------------------------------------------------------------------------
-// Function: H5File::reference
-///\brief This is an overloaded function, provided for your convenience.
-/// It differs from the above function in that it takes an
-/// \c H5std_string for the object's name.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced - \c H5std_string
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5File::reference(void* ref, const H5std_string& name) const
-{
- reference(ref, name.c_str());
-}
-
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: H5File::p_get_obj_type (protected)
-// Purpose Retrieves the type of object that an object reference points to.
-// Parameters
-// ref - IN: Reference to query
-// ref_type - IN: Type of reference to query
-// Return An object type, which can be one of the following:
-// H5G_LINK Object is a symbolic link.
-// H5G_GROUP Object is a group.
-// H5G_DATASET Object is a dataset.
-// H5G_TYPE Object is a named datatype
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t H5File::p_get_obj_type(void *ref, H5R_type_t ref_type) const
-{
- H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref);
-
- if (obj_type == H5G_UNKNOWN)
- {
- throw IdComponentException("", "H5Rget_obj_type failed");
- }
- return(obj_type);
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-
-//--------------------------------------------------------------------------
-// Function: H5File::p_get_region (protected)
-// Purpose Retrieves a dataspace with the region pointed to selected.
-// Parameters
-// ref_type - IN: Type of reference to get region of - default
-// to H5R_DATASET_REGION
-// ref - IN: Reference to get region of
-// Return Dataspace id
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-hid_t H5File::p_get_region(void *ref, H5R_type_t ref_type) const
-{
- hid_t space_id = H5Rget_region(getId(), ref_type, ref);
- if (space_id < 0)
- {
- throw IdComponentException("", "H5Rget_region failed");
- }
- return(space_id);
-}
-
-//--------------------------------------------------------------------------
// Function: H5File::getLocId
// Purpose: Get the id of this file
// Description
diff --git a/c++/src/H5File.h b/c++/src/H5File.h
index b69c963..cfb6bdf 100644
--- a/c++/src/H5File.h
+++ b/c++/src/H5File.h
@@ -21,7 +21,7 @@
namespace H5 {
#endif
-class H5_DLLCPP H5File : public IdComponent, public CommonFG {
+class H5_DLLCPP H5File : public H5Location, public CommonFG {
public:
// Creates or opens an HDF5 file.
H5File( const char* name, unsigned int flags,
@@ -40,18 +40,12 @@ class H5_DLLCPP H5File : public IdComponent, public CommonFG {
// Close this file.
virtual void close();
- // Flushes all buffers associated with this file to disk
- void flush(H5F_scope_t scope) const;
-
// Gets the access property list of this file.
FileAccPropList getAccessPlist() const;
// Gets the creation property list of this file.
FileCreatPropList getCreatePlist() const;
- // Gets the name of this file.
- H5std_string getFileName() const;
-
// Retrieves the file size of an opened file.
hsize_t getFileSize() const;
@@ -67,11 +61,6 @@ class H5_DLLCPP H5File : public IdComponent, public CommonFG {
// and datatypes) in the same file.
void getObjIDs(unsigned types, size_t max_objs, hid_t *oid_list) const;
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
// Retrieves a dataspace with the region pointed to selected.
DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const;
@@ -87,14 +76,7 @@ class H5_DLLCPP H5File : public IdComponent, public CommonFG {
void reOpen(); // added for better name
void reopen();
- // Creates a reference to a named HDF5 object or to a dataset region
- // in this object.
- void reference(void* ref, const char* name, const DataSpace& dataspace,
- H5R_type_t ref_type = H5R_DATASET_REGION) const;
- void reference(void* ref, const char* name) const;
- void reference(void* ref, const H5std_string& name) const;
-
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("H5File"); }
// Throw file exception.
@@ -124,17 +106,6 @@ class H5_DLLCPP H5File : public IdComponent, public CommonFG {
// constructors taking a string or a char*
void p_get_file( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist );
- // Creates a reference to an HDF5 object or a dataset region.
- void p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const;
-
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t p_get_obj_type(void *ref, H5R_type_t ref_type) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
- // Retrieves a dataspace with the region pointed to selected.
- hid_t p_get_region(void *ref, H5R_type_t ref_type) const;
-
protected:
// Sets the HDF5 file id.
virtual void p_setId(const hid_t new_id);
diff --git a/c++/src/H5FloatType.h b/c++/src/H5FloatType.h
index 7444bd5..cbb9541 100644
--- a/c++/src/H5FloatType.h
+++ b/c++/src/H5FloatType.h
@@ -53,7 +53,7 @@ class H5_DLLCPP FloatType : public AtomType {
// Sets the mantissa normalization of a floating-point datatype.
void setNorm( H5T_norm_t norm ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("FloatType"); }
// Default constructor
diff --git a/c++/src/H5Group.cpp b/c++/src/H5Group.cpp
index 6ec2dbb..e83b635 100644
--- a/c++/src/H5Group.cpp
+++ b/c++/src/H5Group.cpp
@@ -147,53 +147,6 @@ Group::Group(Attribute& attr, const void* ref, H5R_type_t ref_type) : H5Object()
}
}
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: Group::getObjType
-///\brief Retrieves the type of object that an object reference points to.
-///\param ref - IN: Reference to query
-///\param ref_type - IN: Type of reference to query, valid values are:
-/// \li \c H5R_OBJECT - Reference is an object reference.
-/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference.
-///\return An object type, which can be one of the following:
-/// \li \c H5G_LINK (0) - Object is a symbolic link.
-/// \li \c H5G_GROUP (1) - Object is a group.
-/// \li \c H5G_DATASET (2) - Object is a dataset.
-/// \li \c H5G_TYPE (3) - Object is a named datatype
-///\exception H5::GroupIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t Group::getObjType(void *ref, H5R_type_t ref_type) const
-{
- try {
- return(p_get_obj_type(ref, ref_type));
- }
- catch (IdComponentException E) {
- throw GroupIException("Group::getObjType", E.getDetailMsg());
- }
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-//--------------------------------------------------------------------------
-// Function: Group::getRegion
-///\brief Retrieves a dataspace with the region pointed to selected.
-///\param ref - IN: Reference to get region of
-///\param ref_type - IN: Type of reference to get region of - default
-///\return DataSpace instance
-///\exception H5::GroupIException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-DataSpace Group::getRegion(void *ref, H5R_type_t ref_type) const
-{
- try {
- DataSpace dataspace(p_get_region(ref, ref_type));
- return(dataspace);
- }
- catch (IdComponentException E) {
- throw GroupIException("Group::getRegion", E.getDetailMsg());
- }
-}
-
//--------------------------------------------------------------------------
// Function: Group::getId
// Purpose: Get the id of this attribute
diff --git a/c++/src/H5Group.h b/c++/src/H5Group.h
index 9978cf0..e4c2415 100644
--- a/c++/src/H5Group.h
+++ b/c++/src/H5Group.h
@@ -26,15 +26,10 @@ class H5_DLLCPP Group : public H5Object, public CommonFG {
// Close this group.
virtual void close();
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
// Retrieves a dataspace with the region pointed to selected.
DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("Group"); }
// Throw group exception.
diff --git a/c++/src/H5IdComponent.h b/c++/src/H5IdComponent.h
index b217c10..7dc1da3 100644
--- a/c++/src/H5IdComponent.h
+++ b/c++/src/H5IdComponent.h
@@ -65,7 +65,7 @@ class H5_DLLCPP IdComponent {
// <class-name> is returned by fromClass().
H5std_string inMemFunc(const char* func_name) const;
- // Returns this class name.
+ ///\brief Returns this class name.
virtual H5std_string fromClass() const { return("IdComponent");}
#endif // DOXYGEN_SHOULD_SKIP_THIS
diff --git a/c++/src/H5IntType.h b/c++/src/H5IntType.h
index b712103..53864ee 100644
--- a/c++/src/H5IntType.h
+++ b/c++/src/H5IntType.h
@@ -35,7 +35,7 @@ class H5_DLLCPP IntType : public AtomType {
// Sets the sign proprety for an integer type.
void setSign( H5T_sign_t sign ) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("IntType"); }
// Default constructor
diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp
new file mode 100644
index 0000000..b93cd86
--- /dev/null
+++ b/c++/src/H5Location.cpp
@@ -0,0 +1,669 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include <string>
+
+#include "H5Include.h"
+#include "H5Exception.h"
+#include "H5IdComponent.h"
+#include "H5PropList.h"
+#include "H5Location.h"
+#include "H5Object.h"
+#include "H5DcreatProp.h"
+#include "H5DxferProp.h"
+#include "H5FaccProp.h"
+#include "H5FcreatProp.h"
+#include "H5CommonFG.h"
+#include "H5DataType.h"
+#include "H5DataSpace.h"
+#include "H5AbstractDs.h"
+#include "H5File.h"
+#include "H5DataSet.h"
+#include "H5Attribute.h"
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+// userAttrOpWrpr simply interfaces between the user's function and the
+// C library function H5Aiterate2; used to resolve the different prototype
+// problem. May be moved to Iterator later.
+extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
+ const H5A_info_t *ainfo, void *op_data)
+{
+ H5std_string s_attr_name = H5std_string( attr_name );
+#ifdef NO_STATIC_CAST
+ UserData4Aiterate* myData = (UserData4Aiterate *) op_data;
+#else
+ UserData4Aiterate* myData = static_cast <UserData4Aiterate *> (op_data);
+#endif
+ myData->op( *myData->location, s_attr_name, myData->opData );
+ return 0;
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location default constructor (protected)
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+H5Location::H5Location() : IdComponent(0) {}
+
+//--------------------------------------------------------------------------
+// Function: H5Location overloaded constructor (protected)
+// Purpose Creates an H5Location object using the id of an existing HDF5
+// object.
+// Parameters object_id - IN: Id of an existing HDF5 object
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+H5Location::H5Location(const hid_t object_id) : IdComponent(object_id) {}
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+//--------------------------------------------------------------------------
+// Function: H5Location copy constructor
+///\brief Copy constructor: makes a copy of the original H5Location
+/// instance.
+///\param original - IN: H5Location instance to copy
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+H5Location::H5Location( const H5Location& original ) : IdComponent( original ) {}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::createAttribute
+///\brief Creates an attribute for a group, dataset, or named datatype.
+///\param name - IN: Name of the attribute
+///\param data_type - IN: Datatype for the attribute
+///\param data_space - IN: Dataspace for the attribute - only simple
+/// dataspaces are allowed at this time
+///\param create_plist - IN: Creation property list - default to
+/// PropList::DEFAULT
+///\return Attribute instance
+///\exception H5::AttributeIException
+///\par Description
+/// The attribute name specified in \a name must be unique.
+/// Attempting to create an attribute with the same name as an
+/// existing attribute will raise an exception, leaving the
+/// pre-existing attribute intact. To overwrite an existing
+/// attribute with a new attribute of the same name, first
+/// delete the existing one with \c H5Location::removeAttr, then
+/// recreate it with this function.
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+Attribute H5Location::createAttribute( const char* name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const
+{
+ hid_t type_id = data_type.getId();
+ hid_t space_id = data_space.getId();
+ hid_t plist_id = create_plist.getId();
+ hid_t attr_id = H5Acreate2(getId(), name, type_id, space_id, plist_id, H5P_DEFAULT );
+
+ // If the attribute id is valid, create and return the Attribute object
+ if( attr_id > 0 )
+ {
+ Attribute attr( attr_id );
+ return( attr );
+ }
+ else
+ throw AttributeIException(inMemFunc("createAttribute"), "H5Acreate2 failed");
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::createAttribute
+///\brief This is an overloaded member function, provided for convenience.
+/// It differs from the above function in that it takes
+/// a reference to an \c H5std_string for \a name.
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+Attribute H5Location::createAttribute( const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const
+{
+ return( createAttribute( name.c_str(), data_type, data_space, create_plist ));
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::openAttribute
+///\brief Opens an attribute given its name.
+///\param name - IN: Name of the attribute
+///\return Attribute instance
+///\exception H5::AttributeIException
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+Attribute H5Location::openAttribute( const char* name ) const
+{
+ hid_t attr_id = H5Aopen(getId(), name, H5P_DEFAULT);
+ if( attr_id > 0 )
+ {
+ Attribute attr( attr_id );
+ return( attr );
+ }
+ else
+ {
+ throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen failed");
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::openAttribute
+///\brief This is an overloaded member function, provided for convenience.
+/// It differs from the above function in that it takes
+/// a reference to an \c H5std_string for \a name.
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+Attribute H5Location::openAttribute( const H5std_string& name ) const
+{
+ return( openAttribute( name.c_str()) );
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::openAttribute
+///\brief Opens an attribute given its index.
+///\param idx - IN: Index of the attribute, a 0-based, non-negative integer
+///\return Attribute instance
+///\exception H5::AttributeIException
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+Attribute H5Location::openAttribute( const unsigned int idx ) const
+{
+ hid_t attr_id = H5Aopen_by_idx(getId(), ".", H5_INDEX_CRT_ORDER,
+ H5_ITER_INC, (hsize_t)idx, H5P_DEFAULT, H5P_DEFAULT);
+ if( attr_id > 0 )
+ {
+ Attribute attr( attr_id );
+ return( attr );
+ }
+ else
+ {
+ throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_by_idx failed");
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::iterateAttrs
+///\brief Iterates a user's function over all the attributes of an H5
+/// object, which may be a group, dataset or named datatype.
+///\param user_op - IN: User's function to operate on each attribute
+///\param _idx - IN/OUT: Starting (IN) and ending (OUT) attribute indices
+///\param op_data - IN: User's data to pass to user's operator function
+///\return Returned value of the last operator if it was non-zero, or
+/// zero if all attributes were processed
+///\exception H5::AttributeIException
+///\par Description
+/// The signature of user_op is
+/// void (*)(H5::H5Location&, H5std_string, void*).
+/// For information, please refer to the C layer Reference Manual
+/// at:
+/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5A.html#Annot-Iterate
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+int H5Location::iterateAttrs( attr_operator_t user_op, unsigned *_idx, void *op_data )
+{
+ // store the user's function and data
+ UserData4Aiterate* userData = new UserData4Aiterate;
+ userData->opData = op_data;
+ userData->op = user_op;
+ userData->location = this;
+
+ // call the C library routine H5Aiterate2 to iterate the attributes
+ hsize_t idx = _idx ? (hsize_t)*_idx : 0;
+ int ret_value = H5Aiterate2(getId(), H5_INDEX_NAME, H5_ITER_INC, &idx,
+ userAttrOpWrpr, (void *) userData);
+
+ // release memory
+ delete userData;
+
+ if( ret_value >= 0 ) {
+ /* Pass back update index value to calling code */
+ if (_idx)
+ *_idx = (unsigned)idx;
+
+ return( ret_value );
+ }
+ else // raise exception when H5Aiterate returns a negative value
+ throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate2 failed");
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::getNumAttrs
+///\brief Returns the number of attributes attached to this HDF5 object.
+///\return Number of attributes
+///\exception H5::AttributeIException
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+int H5Location::getNumAttrs() const
+{
+ H5O_info_t oinfo; /* Object info */
+
+ if(H5Oget_info(getId(), &oinfo) < 0)
+ throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed");
+ else
+ return( (int)oinfo.num_attrs );
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::removeAttr
+///\brief Removes the named attribute from this object.
+///\param name - IN: Name of the attribute to be removed
+///\exception H5::AttributeIException
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+void H5Location::removeAttr( const char* name ) const
+{
+ herr_t ret_value = H5Adelete(getId(), name);
+ if( ret_value < 0 )
+ throw AttributeIException(inMemFunc("removeAttr"), "H5Adelete failed");
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::removeAttr
+///\brief This is an overloaded member function, provided for convenience.
+/// It differs from the above function in that it takes
+/// a reference to an \c H5std_string for \a name.
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+void H5Location::removeAttr( const H5std_string& name ) const
+{
+ removeAttr( name.c_str() );
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::renameAttr
+///\brief Renames the named attribute from this object.
+///\param oldname - IN: Name of the attribute to be renamed
+///\param newname - IN: New name ame of the attribute
+///\exception H5::AttributeIException
+// Programmer Binh-Minh Ribler - Mar, 2005
+//--------------------------------------------------------------------------
+void H5Location::renameAttr(const char* oldname, const char* newname) const
+{
+ herr_t ret_value = H5Arename(getId(), oldname, newname);
+ if (ret_value < 0)
+ throw AttributeIException(inMemFunc("renameAttr"), "H5Arename failed");
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::renameAttr
+///\brief This is an overloaded member function, provided for convenience.
+/// It differs from the above function in that it takes
+/// a reference to an \c H5std_string for the names.
+// Programmer Binh-Minh Ribler - Mar, 2005
+//--------------------------------------------------------------------------
+void H5Location::renameAttr(const H5std_string& oldname, const H5std_string& newname) const
+{
+ renameAttr (oldname.c_str(), newname.c_str());
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::flush
+///\brief Flushes all buffers associated with a location to disk.
+///\param scope - IN: Specifies the scope of the flushing action,
+/// which can be either of these values:
+/// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file
+/// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file
+///\exception H5::FileIException
+///\par Description
+/// This location is used to identify the file to be flushed.
+// Programmer Binh-Minh Ribler - 2012
+// Modification
+// Sep 2012 - BMR
+// Moved from H5File/H5Object
+//--------------------------------------------------------------------------
+void H5Location::flush(H5F_scope_t scope) const
+{
+ herr_t ret_value = H5Fflush(getId(), scope);
+ if( ret_value < 0 )
+ {
+ throw FileIException(inMemFunc("flush"), "H5Fflush failed");
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::getFileName
+///\brief Gets the name of the file, in which this HDF5 object belongs.
+///\return File name
+///\exception H5::IdComponentException
+// Programmer Binh-Minh Ribler - Jul, 2004
+//--------------------------------------------------------------------------
+H5std_string H5Location::getFileName() const
+{
+ try {
+ return(p_get_file_name());
+ }
+ catch (IdComponentException E) {
+ throw FileIException(inMemFunc("getFileName"), E.getDetailMsg());
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::p_reference (protected)
+// Purpose Creates a reference to an HDF5 object or a dataset region.
+// Parameters
+// name - IN: Name of the object to be referenced
+// dataspace - IN: Dataspace with selection
+// ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION
+// Exception H5::IdComponentException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const
+{
+ herr_t ret_value = H5Rcreate(ref, getId(), name, ref_type, space_id);
+ if (ret_value < 0)
+ {
+ throw ReferenceException("", "H5Rcreate failed");
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::reference
+///\brief Creates a reference to an HDF5 object or a dataset region.
+///\param ref - IN: Reference pointer
+///\param name - IN: Name of the object to be referenced
+///\param dataspace - IN: Dataspace with selection
+///\param ref_type - IN: Type of reference to query, valid values are:
+/// \li \c H5R_OBJECT - Reference is an object reference.
+/// \li \c H5R_DATASET_REGION - Reference is a dataset region
+/// reference. - this is the default
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+void H5Location::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const
+{
+ try {
+ p_reference(ref, name, dataspace.getId(), ref_type);
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::reference", E.getDetailMsg());
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::reference
+///\brief This is an overloaded function, provided for your convenience.
+/// It differs from the above function in that it only creates
+/// a reference to an HDF5 object, not to a dataset region.
+///\param ref - IN: Reference pointer
+///\param name - IN: Name of the object to be referenced - \c char pointer
+///\exception H5::ReferenceException
+///\par Description
+// This function passes H5R_OBJECT and -1 to the protected
+// function for it to pass to the C API H5Rcreate
+// to create a reference to the named object.
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+void H5Location::reference(void* ref, const char* name) const
+{
+ try {
+ p_reference(ref, name, -1, H5R_OBJECT);
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::reference", E.getDetailMsg());
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::reference
+///\brief This is an overloaded function, provided for your convenience.
+/// It differs from the above function in that it takes an
+/// \c H5std_string for the object's name.
+///\param ref - IN: Reference pointer
+///\param name - IN: Name of the object to be referenced - \c H5std_string
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+void H5Location::reference(void* ref, const H5std_string& name) const
+{
+ reference(ref, name.c_str());
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::p_dereference (protected)
+// Purpose Dereference a ref into an hdf5 object.
+// Parameters
+// loc_id - IN: An hdf5 identifier specifying the location of the
+// referenced object
+// ref - IN: Reference pointer
+// ref_type - IN: Reference type
+// Exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - Oct, 2006
+// Modification
+// May 2008 - BMR
+// Moved from IdComponent.
+//--------------------------------------------------------------------------
+hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type)
+{
+ hid_t temp_id;
+ temp_id = H5Rdereference2(loc_id, H5P_DEFAULT, ref_type, ref);
+ if (temp_id < 0)
+ {
+ throw ReferenceException("", "H5Rdereference failed");
+ }
+
+ // No failure, set id to the object
+ return(temp_id);
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::dereference
+///\brief Dereferences a reference into an HDF5 object, given an HDF5 object.
+///\param obj - IN: Object specifying the location of the referenced object
+///\param ref - IN: Reference pointer
+///\param ref_type - IN: Reference type
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - Oct, 2006
+// Modification
+// May, 2008
+// Corrected missing parameters. - BMR
+//--------------------------------------------------------------------------
+void H5Location::dereference(H5Object& obj, const void* ref, H5R_type_t ref_type)
+{
+ hid_t temp_id;
+ try {
+ temp_id = p_dereference(obj.getId(), ref, ref_type);
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::dereference - located by object", E.getDetailMsg());
+ }
+ p_setId(temp_id);
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::dereference
+///\brief Dereferences a reference into an HDF5 object, given an HDF5 file.
+///\param h5file - IN: HDF5 file specifying the location of the referenced object
+///\param ref - IN: Reference pointer
+///\param ref_type - IN: Reference type
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - Oct, 2006
+// Modification
+// May, 2008
+// Corrected missing parameters. - BMR
+//--------------------------------------------------------------------------
+void H5Location::dereference(H5File& h5file, const void* ref, H5R_type_t ref_type)
+{
+ hid_t temp_id;
+ try {
+ temp_id = p_dereference(h5file.getId(), ref, ref_type);
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::dereference - located by file", E.getDetailMsg());
+ }
+ p_setId(temp_id);
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::dereference
+///\brief Dereferences a reference into an HDF5 object, given an attribute.
+///\param attr - IN: Attribute specifying the location of the referenced object
+///\param ref - IN: Reference pointer
+///\param ref_type - IN: Reference type
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - Oct, 2006
+// Modification
+// May, 2008
+// Corrected missing parameters. - BMR
+//--------------------------------------------------------------------------
+void H5Location::dereference(Attribute& attr, const void* ref, H5R_type_t ref_type)
+{
+ hid_t temp_id;
+ try {
+ temp_id = p_dereference(attr.getId(), ref, ref_type);
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::dereference - located by attribute", E.getDetailMsg());
+ }
+ p_setId(temp_id);
+}
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+//--------------------------------------------------------------------------
+// Function: H5Location::getObjType
+///\brief Retrieves the type of object that an object reference points to.
+///\param ref_type - IN: Type of reference to query, valid values are:
+/// \li \c H5R_OBJECT \tReference is an object reference.
+/// \li \c H5R_DATASET_REGION \tReference is a dataset region reference.
+///\param ref - IN: Reference to query
+///\return An object type, which can be one of the following:
+/// \li \c H5G_UNKNOWN \tA failure occurs. (-1)
+/// \li \c H5G_GROUP \tObject is a group.
+/// \li \c H5G_DATASET \tObject is a dataset.
+/// \li \c H5G_TYPE Object \tis a named datatype
+/// \li \c H5G_LINK \tObject is a symbolic link.
+/// \li \c H5G_UDLINK \tObject is a user-defined link.
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+// Modification
+// Sep 2012: Moved up from H5File, Group, DataSet, and DataType
+//--------------------------------------------------------------------------
+H5G_obj_t H5Location::getObjType(void *ref, H5R_type_t ref_type) const
+{
+ try {
+ return(p_get_obj_type(ref, ref_type));
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::getObjType", E.getDetailMsg());
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::p_get_obj_type (protected)
+// Purpose Retrieves the type of object that an object reference points to.
+// Parameters
+// ref - IN: Reference to query
+// ref_type - IN: Type of reference to query
+// Return An object type, which can be one of the following:
+// H5G_UNKNOWN \tFailure occurs (-1)
+// H5G_GROUP \tObject is a group.
+// H5G_DATASET \tObject is a dataset.
+// H5G_TYPE Object \tis a named datatype.
+// H5G_LINK \tObject is a symbolic link.
+// H5G_UDLINK \tObject is a user-defined link.
+// Exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const
+{
+ H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref);
+
+ if (obj_type == H5G_UNKNOWN)
+ {
+ throw ReferenceException("", "H5Rget_obj_type1 failed");
+ }
+ return(obj_type);
+}
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+
+//--------------------------------------------------------------------------
+// Function: H5Location::getRefObjType
+///\brief Retrieves the type of object that an object reference points to.
+///\param ref - IN: Reference to query
+///\param ref_type - IN: Type of reference to query, valid values are:
+/// \li \c H5R_OBJECT - Reference is an object reference.
+/// \li \c H5R_DATASET_REGION - Reference is a dataset region reference.
+///\return An object type, which can be one of the following:
+/// \li \c H5O_TYPE_UNKNOWN - Unknown object type (-1)
+/// \li \c H5O_TYPE_GROUP - Object is a group
+/// \li \c H5O_TYPE_DATASET - Object is a dataset
+/// \li \c H5O_TYPE_NAMED_DATATYPE - Object is a named datatype
+/// \li \c H5O_TYPE_NTYPES - Number of different object types
+///\exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const
+{
+ try {
+ return(p_get_ref_obj_type(ref, ref_type));
+ }
+ catch (ReferenceException E) {
+ throw ReferenceException("H5Location::getRefObjType", E.getDetailMsg());
+ }
+}
+
+//--------------------------------------------------------------------------
+// Function: H5Location::p_get_ref_obj_type (protected)
+// Purpose Retrieves the type of object that an object reference points to.
+// Parameters
+// ref - IN: Reference to query
+// ref_type - IN: Type of reference to query
+// Return An object type, which can be one of the following:
+// H5O_TYPE_UNKNOWN - Unknown object type (-1)
+// H5O_TYPE_GROUP - Object is a group
+// H5O_TYPE_DATASET - Object is a dataset
+// H5O_TYPE_NAMED_DATATYPE - Object is a named datatype
+// H5O_TYPE_NTYPES - Number of object types
+// Exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const
+{
+ H5O_type_t obj_type = H5O_TYPE_UNKNOWN;
+ herr_t ret_value = H5Rget_obj_type2(getId(), ref_type, ref, &obj_type);
+
+ if (obj_type == H5O_TYPE_UNKNOWN || obj_type >= H5O_TYPE_NTYPES)
+ {
+ throw ReferenceException("", "H5Rget_obj_type2 failed");
+ }
+ return(obj_type);
+}
+
+
+//--------------------------------------------------------------------------
+// Function: H5Location::p_get_region (protected)
+// Purpose Retrieves a dataspace with the region pointed to selected.
+// Parameters
+// ref_type - IN: Type of reference to get region of - default
+// to H5R_DATASET_REGION
+// ref - IN: Reference to get region of
+// Return Dataspace id
+// Exception H5::ReferenceException
+// Programmer Binh-Minh Ribler - May, 2004
+//--------------------------------------------------------------------------
+hid_t H5Location::p_get_region(void *ref, H5R_type_t ref_type) const
+{
+ hid_t space_id = H5Rget_region(getId(), ref_type, ref);
+ if (space_id < 0)
+ {
+ throw ReferenceException("", "H5Rget_region failed");
+ }
+ return(space_id);
+}
+
+
+//--------------------------------------------------------------------------
+// Function: H5Location destructor
+///\brief Noop destructor.
+// Programmer Binh-Minh Ribler - 2000
+//--------------------------------------------------------------------------
+H5Location::~H5Location() {}
+
+#ifndef H5_NO_NAMESPACE
+} // end namespace
+#endif
diff --git a/c++/src/H5Location.h b/c++/src/H5Location.h
new file mode 100644
index 0000000..d1dd892
--- /dev/null
+++ b/c++/src/H5Location.h
@@ -0,0 +1,146 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5Location_H
+#define _H5Location_H
+
+#include "H5Classes.h" // constains forward class declarations
+
+// H5Location is an abstract class. It provides a collection of wrappers
+// of C functions which take location IDs. Most of these were in H5Object
+// but are now moved here for H5File's access.
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+class H5_DLLCPP H5Location; // forward declaration for UserData4Aiterate
+
+// Define the operator function pointer for H5Aiterate().
+typedef void (*attr_operator_t)( H5Location& loc/*in*/,
+ const H5std_string attr_name/*in*/,
+ void *operator_data/*in,out*/);
+
+class UserData4Aiterate { // user data for attribute iteration
+ public:
+ attr_operator_t op;
+ void* opData;
+ H5Location* location;
+};
+
+// An H5Location can be a file, group, dataset, named datatype, or attribute.
+
+class H5_DLLCPP H5Location : public IdComponent {
+ public:
+ // Creates an attribute for the specified object at this location
+ // PropList is currently not used, so always be default.
+ Attribute createAttribute( const char* name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
+ Attribute createAttribute( const H5std_string& name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
+
+ // Given its name, opens the attribute that belongs to an object at
+ // this location.
+ Attribute openAttribute( const char* name ) const;
+ Attribute openAttribute( const H5std_string& name ) const;
+
+ // Given its index, opens the attribute that belongs to an object at
+ // this location.
+ Attribute openAttribute( const unsigned int idx ) const;
+
+ // Flushes all buffers associated with this location to disk.
+ void flush( H5F_scope_t scope ) const;
+
+ // Gets the name of the file, specified by this location.
+ H5std_string getFileName() const;
+
+ // Determines the number of attributes at this location.
+ int getNumAttrs() const;
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ // Retrieves the type of object that an object reference points to.
+ H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+ // Retrieves the type of object that an object reference points to.
+ H5O_type_t getRefObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
+ // Note: getRefObjType deprecates getObjType, but getObjType's name is
+ // misleading, so getRefObjType is used in the new function instead.
+
+ // Iterate user's function over the attributes at this location.
+ int iterateAttrs( attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL );
+
+ // Removes the named attribute from this location.
+ void removeAttr( const char* name ) const;
+ void removeAttr( const H5std_string& name ) const;
+
+ // Renames the named attribute to a new name.
+ void renameAttr(const char* oldname, const char* newname) const;
+ void renameAttr(const H5std_string& oldname, const H5std_string& newname) const;
+
+ // Creates a reference to a named object or to a dataset region
+ // in this object.
+ void reference(void* ref, const char* name, const DataSpace& dataspace,
+ H5R_type_t ref_type = H5R_DATASET_REGION) const;
+ void reference(void* ref, const char* name) const;
+ void reference(void* ref, const H5std_string& name) const;
+
+ // Open a referenced object whose location is specified by either
+ // a file, an HDF5 object, or an attribute.
+ void dereference(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ void dereference(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ void dereference(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+
+ // For subclasses.
+ virtual hid_t getId() const = 0;
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Default constructor,
+ H5Location();
+
+ // Creates a copy of an existing object giving the location id.
+ H5Location(const hid_t loc_id);
+
+ // Copy constructor.
+ H5Location(const H5Location& original);
+
+ // Creates a reference to an HDF5 object or a dataset region.
+ void p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const;
+
+ // Dereferences a ref into an HDF5 id.
+ hid_t p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type);
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ // Retrieves the type of object that an object reference points to.
+ H5G_obj_t p_get_obj_type(void *ref, H5R_type_t ref_type) const;
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+ // Retrieves the type of object that an object reference points to.
+ H5O_type_t p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const;
+
+ // Retrieves a dataspace with the region pointed to selected.
+ hid_t p_get_region(void *ref, H5R_type_t ref_type) const;
+
+ // Noop destructor.
+ virtual ~H5Location();
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+}; /* end class H5Location */
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif
diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp
index 3c85502..e29e80e 100644
--- a/c++/src/H5Object.cpp
+++ b/c++/src/H5Object.cpp
@@ -37,30 +37,11 @@ namespace H5 {
#endif
#ifndef DOXYGEN_SHOULD_SKIP_THIS
-// userAttrOpWrpr simply interfaces between the user's function and the
-// C library function H5Aiterate2; used to resolve the different prototype
-// problem. May be moved to Iterator later.
-extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
- const H5A_info_t *ainfo, void *op_data)
-{
- H5std_string s_attr_name = H5std_string( attr_name );
-#ifdef NO_STATIC_CAST
- UserData4Aiterate* myData = (UserData4Aiterate *) op_data;
-#else
- UserData4Aiterate* myData = static_cast <UserData4Aiterate *> (op_data);
-#endif
- myData->op( *myData->object, s_attr_name, myData->opData );
- return 0;
-}
-
//--------------------------------------------------------------------------
// Function: H5Object default constructor (protected)
-// Description
-// The id is set by IdComponent() but subclass constructor will
-// set it to a valid HDF5 id.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5Object::H5Object() : IdComponent(0) {}
+H5Object::H5Object() : H5Location() {}
//--------------------------------------------------------------------------
// Function: H5Object overloaded constructor (protected)
@@ -69,7 +50,7 @@ H5Object::H5Object() : IdComponent(0) {}
// Parameters object_id - IN: Id of an existing HDF5 object
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5Object::H5Object( const hid_t object_id ) : IdComponent( object_id ) {}
+H5Object::H5Object( const hid_t object_id ) : H5Location( object_id ) {}
#endif // DOXYGEN_SHOULD_SKIP_THIS
@@ -80,496 +61,7 @@ H5Object::H5Object( const hid_t object_id ) : IdComponent( object_id ) {}
///\param original - IN: H5Object instance to copy
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5Object::H5Object( const H5Object& original ) : IdComponent( original ) {}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::createAttribute
-///\brief Creates an attribute for a group, dataset, or named datatype.
-///\param name - IN: Name of the attribute
-///\param data_type - IN: Datatype for the attribute
-///\param data_space - IN: Dataspace for the attribute - only simple
-/// dataspaces are allowed at this time
-///\param create_plist - IN: Creation property list - default to
-/// PropList::DEFAULT
-///\return Attribute instance
-///\exception H5::AttributeIException
-///\par Description
-/// The attribute name specified in \a name must be unique.
-/// Attempting to create an attribute with the same name as an
-/// existing attribute will raise an exception, leaving the
-/// pre-existing attribute intact. To overwrite an existing
-/// attribute with a new attribute of the same name, first
-/// delete the existing one with \c H5Object::removeAttr, then
-/// recreate it with this function.
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-Attribute H5Object::createAttribute( const char* name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const
-{
- hid_t type_id = data_type.getId();
- hid_t space_id = data_space.getId();
- hid_t plist_id = create_plist.getId();
- hid_t attr_id = H5Acreate2(getId(), name, type_id, space_id, plist_id, H5P_DEFAULT );
-
- // If the attribute id is valid, create and return the Attribute object
- if( attr_id > 0 )
- {
- Attribute attr( attr_id );
- return( attr );
- }
- else
- throw AttributeIException(inMemFunc("createAttribute"), "H5Acreate2 failed");
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::createAttribute
-///\brief This is an overloaded member function, provided for convenience.
-/// It differs from the above function in that it takes
-/// a reference to an \c H5std_string for \a name.
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-Attribute H5Object::createAttribute( const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const PropList& create_plist ) const
-{
- return( createAttribute( name.c_str(), data_type, data_space, create_plist ));
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::openAttribute
-///\brief Opens an attribute given its name.
-///\param name - IN: Name of the attribute
-///\return Attribute instance
-///\exception H5::AttributeIException
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-Attribute H5Object::openAttribute( const char* name ) const
-{
- hid_t attr_id = H5Aopen(getId(), name, H5P_DEFAULT);
- if( attr_id > 0 )
- {
- Attribute attr( attr_id );
- return( attr );
- }
- else
- {
- throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen failed");
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::openAttribute
-///\brief This is an overloaded member function, provided for convenience.
-/// It differs from the above function in that it takes
-/// a reference to an \c H5std_string for \a name.
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-Attribute H5Object::openAttribute( const H5std_string& name ) const
-{
- return( openAttribute( name.c_str()) );
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::openAttribute
-///\brief Opens an attribute given its index.
-///\param idx - IN: Index of the attribute, a 0-based, non-negative integer
-///\return Attribute instance
-///\exception H5::AttributeIException
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-Attribute H5Object::openAttribute( const unsigned int idx ) const
-{
- hid_t attr_id = H5Aopen_by_idx(getId(), ".", H5_INDEX_CRT_ORDER,
- H5_ITER_INC, (hsize_t)idx, H5P_DEFAULT, H5P_DEFAULT);
- if( attr_id > 0 )
- {
- Attribute attr( attr_id );
- return( attr );
- }
- else
- {
- throw AttributeIException(inMemFunc("openAttribute"), "H5Aopen_by_idx failed");
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::iterateAttrs
-///\brief Iterates a user's function over all the attributes of an H5
-/// object, which may be a group, dataset or named datatype.
-///\param user_op - IN: User's function to operate on each attribute
-///\param _idx - IN/OUT: Starting (IN) and ending (OUT) attribute indices
-///\param op_data - IN: User's data to pass to user's operator function
-///\return Returned value of the last operator if it was non-zero, or
-/// zero if all attributes were processed
-///\exception H5::AttributeIException
-///\par Description
-/// The signature of user_op is
-/// void (*)(H5::H5Object&, H5std_string, void*).
-/// For information, please refer to the C layer Reference Manual
-/// at:
-/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5A.html#Annot-Iterate
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-int H5Object::iterateAttrs( attr_operator_t user_op, unsigned *_idx, void *op_data )
-{
- // store the user's function and data
- UserData4Aiterate* userData = new UserData4Aiterate;
- userData->opData = op_data;
- userData->op = user_op;
- userData->object = this;
-
- // call the C library routine H5Aiterate2 to iterate the attributes
- hsize_t idx = _idx ? (hsize_t)*_idx : 0;
- int ret_value = H5Aiterate2(getId(), H5_INDEX_NAME, H5_ITER_INC, &idx,
- userAttrOpWrpr, (void *) userData);
-
- // release memory
- delete userData;
-
- if( ret_value >= 0 ) {
- /* Pass back update index value to calling code */
- if (_idx)
- *_idx = (unsigned)idx;
-
- return( ret_value );
- }
- else // raise exception when H5Aiterate returns a negative value
- throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate2 failed");
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::getNumAttrs
-///\brief Returns the number of attributes attached to this HDF5 object.
-///\return Number of attributes
-///\exception H5::AttributeIException
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-int H5Object::getNumAttrs() const
-{
- H5O_info_t oinfo; /* Object info */
-
- if(H5Oget_info(getId(), &oinfo) < 0)
- throw AttributeIException(inMemFunc("getNumAttrs"), "H5Oget_info failed");
- else
- return( (int)oinfo.num_attrs );
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::removeAttr
-///\brief Removes the named attribute from this object.
-///\param name - IN: Name of the attribute to be removed
-///\exception H5::AttributeIException
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-void H5Object::removeAttr( const char* name ) const
-{
- herr_t ret_value = H5Adelete(getId(), name);
- if( ret_value < 0 )
- throw AttributeIException(inMemFunc("removeAttr"), "H5Adelete failed");
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::removeAttr
-///\brief This is an overloaded member function, provided for convenience.
-/// It differs from the above function in that it takes
-/// a reference to an \c H5std_string for \a name.
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-void H5Object::removeAttr( const H5std_string& name ) const
-{
- removeAttr( name.c_str() );
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::renameAttr
-///\brief Renames the named attribute from this object.
-///\param oldname - IN: Name of the attribute to be renamed
-///\param newname - IN: New name ame of the attribute
-///\exception H5::AttributeIException
-// Programmer Binh-Minh Ribler - Mar, 2005
-//--------------------------------------------------------------------------
-void H5Object::renameAttr(const char* oldname, const char* newname) const
-{
- herr_t ret_value = H5Arename(getId(), oldname, newname);
- if (ret_value < 0)
- throw AttributeIException(inMemFunc("renameAttr"), "H5Arename failed");
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::renameAttr
-///\brief This is an overloaded member function, provided for convenience.
-/// It differs from the above function in that it takes
-/// a reference to an \c H5std_string for the names.
-// Programmer Binh-Minh Ribler - Mar, 2005
-//--------------------------------------------------------------------------
-void H5Object::renameAttr(const H5std_string& oldname, const H5std_string& newname) const
-{
- renameAttr (oldname.c_str(), newname.c_str());
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::flush
-///\brief Flushes all buffers associated with a file to disk.
-///\param scope - IN: Specifies the scope of the flushing action,
-/// which can be either of these values:
-/// \li \c H5F_SCOPE_GLOBAL - Flushes the entire virtual file
-/// \li \c H5F_SCOPE_LOCAL - Flushes only the specified file
-///\exception H5::AttributeIException
-///\par Description
-/// This object is used to identify the file to be flushed.
-// Programmer Binh-Minh Ribler - 2000
-//--------------------------------------------------------------------------
-void H5Object::flush(H5F_scope_t scope) const
-{
- herr_t ret_value = H5Fflush(getId(), scope);
- if( ret_value < 0 )
- {
- throw FileIException(inMemFunc("flush"), "H5Fflush failed");
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::getFileName
-///\brief Gets the name of the file, in which this HDF5 object belongs.
-///\return File name
-///\exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - Jul, 2004
-//--------------------------------------------------------------------------
-H5std_string H5Object::getFileName() const
-{
- try {
- return(p_get_file_name());
- }
- catch (IdComponentException E) {
- throw FileIException(inMemFunc("getFileName"), E.getDetailMsg());
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::p_reference (protected)
-// Purpose Creates a reference to an HDF5 object or a dataset region.
-// Parameters
-// name - IN: Name of the object to be referenced
-// dataspace - IN: Dataspace with selection
-// ref_type - IN: Type of reference; default to \c H5R_DATASET_REGION
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5Object::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const
-{
- herr_t ret_value = H5Rcreate(ref, getId(), name, ref_type, space_id);
- if (ret_value < 0)
- {
- throw IdComponentException("", "H5Rcreate failed");
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::reference
-///\brief Creates a reference to an HDF5 object or a dataset region.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced
-///\param dataspace - IN: Dataspace with selection
-///\param ref_type - IN: Type of reference to query, valid values are:
-/// \li \c H5R_OBJECT - Reference is an object reference.
-/// \li \c H5R_DATASET_REGION - Reference is a dataset region
-/// reference. - this is the default
-///\exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5Object::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const
-{
- try {
- p_reference(ref, name, dataspace.getId(), ref_type);
- }
- catch (IdComponentException E) {
- throw IdComponentException("H5Object::reference", E.getDetailMsg());
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::reference
-///\brief This is an overloaded function, provided for your convenience.
-/// It differs from the above function in that it only creates
-/// a reference to an HDF5 object, not to a dataset region.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced - \c char pointer
-///\exception H5::IdComponentException
-///\par Description
-// This function passes H5R_OBJECT and -1 to the protected
-// function for it to pass to the C API H5Rcreate
-// to create a reference to the named object.
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5Object::reference(void* ref, const char* name) const
-{
- try {
- p_reference(ref, name, -1, H5R_OBJECT);
- }
- catch (IdComponentException E) {
- throw IdComponentException("H5Object::reference", E.getDetailMsg());
- }
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::reference
-///\brief This is an overloaded function, provided for your convenience.
-/// It differs from the above function in that it takes an
-/// \c H5std_string for the object's name.
-///\param ref - IN: Reference pointer
-///\param name - IN: Name of the object to be referenced - \c H5std_string
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-void H5Object::reference(void* ref, const H5std_string& name) const
-{
- reference(ref, name.c_str());
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::p_dereference (protected)
-// Purpose Dereference a ref into an hdf5 object.
-// Parameters
-// loc_id - IN: An hdf5 identifier specifying the location of the
-// referenced object
-// ref - IN: Reference pointer
-// ref_type - IN: Reference type
-// Exception H5::ReferenceException
-// Programmer Binh-Minh Ribler - Oct, 2006
-// Modification
-// May 2008 - BMR
-// Moved from IdComponent.
-//--------------------------------------------------------------------------
-hid_t H5Object::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type)
-{
- hid_t temp_id;
- temp_id = H5Rdereference2(loc_id, H5P_DEFAULT, ref_type, ref);
- if (temp_id < 0)
- {
- throw ReferenceException("", "H5Rdereference failed");
- }
-
- // No failure, set id to the object
- return(temp_id);
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::dereference
-///\brief Dereferences a reference into an HDF5 object, given an HDF5 object.
-///\param obj - IN: Object specifying the location of the referenced object
-///\param ref - IN: Reference pointer
-///\param ref_type - IN: Reference type
-///\exception H5::ReferenceException
-// Programmer Binh-Minh Ribler - Oct, 2006
-// Modification
-// May, 2008
-// Corrected missing parameters. - BMR
-//--------------------------------------------------------------------------
-void H5Object::dereference(H5Object& obj, const void* ref, H5R_type_t ref_type)
-{
- hid_t temp_id;
- try {
- temp_id = p_dereference(obj.getId(), ref, ref_type);
- }
- catch (ReferenceException E) {
- throw ReferenceException("H5Object::dereference - located by object", E.getDetailMsg());
- }
- p_setId(temp_id);
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::dereference
-///\brief Dereferences a reference into an HDF5 object, given an HDF5 file.
-///\param h5file - IN: HDF5 file specifying the location of the referenced object
-///\param ref - IN: Reference pointer
-///\param ref_type - IN: Reference type
-///\exception H5::ReferenceException
-// Programmer Binh-Minh Ribler - Oct, 2006
-// Modification
-// May, 2008
-// Corrected missing parameters. - BMR
-//--------------------------------------------------------------------------
-void H5Object::dereference(H5File& h5file, const void* ref, H5R_type_t ref_type)
-{
- hid_t temp_id;
- try {
- temp_id = p_dereference(h5file.getId(), ref, ref_type);
- }
- catch (ReferenceException E) {
- throw ReferenceException("H5Object::dereference - located by file", E.getDetailMsg());
- }
- p_setId(temp_id);
-}
-
-//--------------------------------------------------------------------------
-// Function: H5Object::dereference
-///\brief Dereferences a reference into an HDF5 object, given an attribute.
-///\param attr - IN: Attribute specifying the location of the referenced object
-///\param ref - IN: Reference pointer
-///\param ref_type - IN: Reference type
-///\exception H5::ReferenceException
-// Programmer Binh-Minh Ribler - Oct, 2006
-// Modification
-// May, 2008
-// Corrected missing parameters. - BMR
-//--------------------------------------------------------------------------
-void H5Object::dereference(Attribute& attr, const void* ref, H5R_type_t ref_type)
-{
- hid_t temp_id;
- try {
- temp_id = p_dereference(attr.getId(), ref, ref_type);
- }
- catch (ReferenceException E) {
- throw ReferenceException("H5Object::dereference - located by attribute", E.getDetailMsg());
- }
- p_setId(temp_id);
-}
-
-#ifndef H5_NO_DEPRECATED_SYMBOLS
-//--------------------------------------------------------------------------
-// Function: H5Object::p_get_obj_type (protected)
-// Purpose Retrieves the type of object that an object reference points to.
-// Parameters
-// ref - IN: Reference to query
-// ref_type - IN: Type of reference to query
-// Return An object type, which can be one of the following:
-// H5G_LINK Object is a symbolic link.
-// H5G_GROUP Object is a group.
-// H5G_DATASET Object is a dataset.
-// H5G_TYPE Object is a named datatype
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-H5G_obj_t H5Object::p_get_obj_type(void *ref, H5R_type_t ref_type) const
-{
- H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref);
-
- if (obj_type == H5G_UNKNOWN)
- {
- throw IdComponentException("", "H5Rget_obj_type failed");
- }
- return(obj_type);
-}
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
-
-//--------------------------------------------------------------------------
-// Function: H5Object::p_get_region (protected)
-// Purpose Retrieves a dataspace with the region pointed to selected.
-// Parameters
-// ref_type - IN: Type of reference to get region of - default
-// to H5R_DATASET_REGION
-// ref - IN: Reference to get region of
-// Return Dataspace id
-// Exception H5::IdComponentException
-// Programmer Binh-Minh Ribler - May, 2004
-//--------------------------------------------------------------------------
-hid_t H5Object::p_get_region(void *ref, H5R_type_t ref_type) const
-{
- hid_t space_id = H5Rget_region(getId(), ref_type, ref);
- if (space_id < 0)
- {
- throw IdComponentException("", "H5Rget_region failed");
- }
- return(space_id);
-}
-
+H5Object::H5Object( const H5Object& original ) : H5Location( original ) {}
//--------------------------------------------------------------------------
// Function: H5Object destructor
diff --git a/c++/src/H5Object.h b/c++/src/H5Object.h
index 4ac417b..bfd5e6f 100644
--- a/c++/src/H5Object.h
+++ b/c++/src/H5Object.h
@@ -17,81 +17,29 @@
#ifndef _H5Object_H
#define _H5Object_H
+#include "H5Location.h"
#include "H5Classes.h" // constains forward class declarations
// H5Object is a baseclass. It has these subclasses:
// Group, DataSet, and DataType.
// DataType, in turn, has several specific datatypes as subclasses.
+// Modification:
+// Sept 18, 2012: Added class H5Location in between IdComponent and
+// H5Object. An H5File now inherits from H5Location. All HDF5
+// wrappers in H5Object are moved up to H5Location. H5Object
+// is left mostly empty for future wrappers that are only for
+// group, dataset, and named datatype. Note that the reason for
+// adding H5Location instead of simply moving H5File to be under
+// H5Object is H5File is not an HDF5 object, and renaming H5Object
+// to H5Location will risk breaking user applications.
+// -BMR
#ifndef H5_NO_NAMESPACE
namespace H5 {
#endif
-#ifndef DOXYGEN_SHOULD_SKIP_THIS
-class H5_DLLCPP H5Object; // forward declaration for UserData4Aiterate
-
-// Define the operator function pointer for H5Aiterate().
-typedef void (*attr_operator_t)( H5Object& loc/*in*/,
- const H5std_string attr_name/*in*/,
- void *operator_data/*in,out*/);
-
-class UserData4Aiterate { // user data for attribute iteration
- public:
- attr_operator_t op;
- void* opData;
- H5Object* object;
-};
-#endif // DOXYGEN_SHOULD_SKIP_THIS
-
-// The above part is being moved into Iterator, but not completed
-
-class H5_DLLCPP H5Object : public IdComponent {
+class H5_DLLCPP H5Object : public H5Location {
public:
- // Creates an attribute for a group, dataset, or named datatype.
- // PropList is currently not used, so always be default.
- Attribute createAttribute( const char* name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
- Attribute createAttribute( const H5std_string& name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
-
- // Opens an attribute given its name.
- Attribute openAttribute( const char* name ) const;
- Attribute openAttribute( const H5std_string& name ) const;
-
- // Opens an attribute given its index.
- Attribute openAttribute( const unsigned int idx ) const;
-
- // Flushes all buffers associated with this object to disk
- void flush( H5F_scope_t scope ) const;
-
- // Gets the name of the file, in which this HDF5 object belongs.
- H5std_string getFileName() const;
-
- // Determines the number of attributes attached to this object.
- int getNumAttrs() const;
-
- // Iterate user's function over the attributes of this object
- int iterateAttrs( attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL );
-
- // Removes the named attribute from this object.
- void removeAttr( const char* name ) const;
- void removeAttr( const H5std_string& name ) const;
-
- // Renames the attribute to a new name.
- void renameAttr(const char* oldname, const char* newname) const;
- void renameAttr(const H5std_string& oldname, const H5std_string& newname) const;
-
- // Creates a reference to a named Hdf5 object or to a dataset region
- // in this object.
- void reference(void* ref, const char* name, const DataSpace& dataspace,
- H5R_type_t ref_type = H5R_DATASET_REGION) const;
- void reference(void* ref, const char* name) const;
- void reference(void* ref, const H5std_string& name) const;
-
- // Open a referenced HDF5 object whose location is specified by either
- // a file, an HDF5 object, or an attribute.
- void dereference(H5File& h5file, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
- void dereference(H5Object& obj, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
- void dereference(Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
-
// Copy constructor: makes copy of an H5Object object.
H5Object(const H5Object& original);
@@ -106,23 +54,6 @@ class H5_DLLCPP H5Object : public IdComponent {
// Creates a copy of an existing object giving the object id
H5Object( const hid_t object_id );
- // Gets the id of the H5 file in which the given object is located.
- hid_t p_get_file_id();
-
- // Creates a reference to an HDF5 object or a dataset region.
- void p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const;
-
- // Dereferences a ref into an hdf5 id.
- hid_t p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type);
-
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- // Retrieves the type of object that an object reference points to.
- H5G_obj_t p_get_obj_type(void *ref, H5R_type_t ref_type) const;
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
- // Retrieves a dataspace with the region pointed to selected.
- hid_t p_get_region(void *ref, H5R_type_t ref_type) const;
-
#endif // DOXYGEN_SHOULD_SKIP_THIS
}; /* end class H5Object */
diff --git a/c++/src/H5PredType.h b/c++/src/H5PredType.h
index 9cb1c65..8a04f0c 100644
--- a/c++/src/H5PredType.h
+++ b/c++/src/H5PredType.h
@@ -36,7 +36,7 @@ namespace H5 {
class H5_DLLCPP PredType : public AtomType {
public:
- ///\brief Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("PredType"); }
// Makes a copy of the predefined type and stores the new
diff --git a/c++/src/H5PropList.h b/c++/src/H5PropList.h
index 5dfa538..7e47b32 100644
--- a/c++/src/H5PropList.h
+++ b/c++/src/H5PropList.h
@@ -94,7 +94,7 @@ class H5_DLLCPP PropList : public IdComponent {
void removeProp(const char *name) const;
void removeProp(const H5std_string& name) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("PropList"); }
// Default constructor: creates a stub PropList object.
diff --git a/c++/src/H5StrType.h b/c++/src/H5StrType.h
index d4a0016..be9fed8 100644
--- a/c++/src/H5StrType.h
+++ b/c++/src/H5StrType.h
@@ -47,7 +47,7 @@ class H5_DLLCPP StrType : public AtomType {
// Defines the storage mechanism for character strings.
void setStrpad(H5T_str_t strpad) const;
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("StrType"); }
// default constructor
diff --git a/c++/src/H5VarLenType.h b/c++/src/H5VarLenType.h
index 91f653e..0cee219 100644
--- a/c++/src/H5VarLenType.h
+++ b/c++/src/H5VarLenType.h
@@ -30,7 +30,7 @@ class H5_DLLCPP VarLenType : public DataType {
// on the specified base type.
VarLenType(const DataType* base_type);
- // Returns this class name
+ ///\brief Returns this class name.
virtual H5std_string fromClass () const { return("VarLenType"); }
// Copy constructor: makes copy of the original object.
diff --git a/c++/src/Makefile.am b/c++/src/Makefile.am
index 6278fa0..ec942fd 100644
--- a/c++/src/Makefile.am
+++ b/c++/src/Makefile.am
@@ -40,12 +40,12 @@ bin_SCRIPTS=h5c++
# Source files for the library
libhdf5_cpp_la_SOURCES=H5Exception.cpp H5IdComponent.cpp H5Library.cpp \
- H5Attribute.cpp H5Object.cpp H5PropList.cpp H5FaccProp.cpp \
- H5FcreatProp.cpp H5DcreatProp.cpp H5DxferProp.cpp H5DataType.cpp \
- H5DataSpace.cpp H5AbstractDs.cpp H5AtomType.cpp H5PredType.cpp \
- H5EnumType.cpp H5IntType.cpp H5FloatType.cpp H5StrType.cpp \
- H5ArrayType.cpp H5VarLenType.cpp H5CompType.cpp H5DataSet.cpp \
- H5CommonFG.cpp H5Group.cpp H5File.cpp
+ H5Attribute.cpp H5Location.cpp H5Object.cpp H5PropList.cpp \
+ H5FaccProp.cpp H5FcreatProp.cpp H5DcreatProp.cpp H5DxferProp.cpp \
+ H5DataType.cpp H5DataSpace.cpp H5AbstractDs.cpp H5AtomType.cpp \
+ H5PredType.cpp H5EnumType.cpp H5IntType.cpp H5FloatType.cpp \
+ H5StrType.cpp H5ArrayType.cpp H5VarLenType.cpp H5CompType.cpp \
+ H5DataSet.cpp H5CommonFG.cpp H5Group.cpp H5File.cpp
# HDF5 C++ library depends on HDF5 Library.
libhdf5_cpp_la_LIBADD=$(LIBHDF5)
@@ -55,8 +55,9 @@ include_HEADERS=H5Cpp.h H5AbstractDs.h H5AtomType.h H5Attribute.h H5Classes.h \
H5CommonFG.h H5CompType.h H5DataSet.h H5DataSpace.h H5DataType.h \
H5DcreatProp.h H5DxferProp.h H5EnumType.h H5Exception.h H5FaccProp.h \
H5FcreatProp.h H5File.h H5FloatType.h H5Group.h H5IdComponent.h \
- H5Include.h H5IntType.h H5Library.h H5Object.h H5PredType.h \
- H5PropList.h H5StrType.h H5CppDoc.h H5ArrayType.h H5VarLenType.h
+ H5Include.h H5IntType.h H5Library.h H5Location.h H5Object.h \
+ H5PredType.h H5PropList.h H5StrType.h H5CppDoc.h H5ArrayType.h \
+ H5VarLenType.h
# h5c++ and libhdf5.settings are generated during configure. Remove only when
# distclean.
diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in
index 56798a7..65aee60 100644
--- a/c++/src/Makefile.in
+++ b/c++/src/Makefile.in
@@ -121,12 +121,12 @@ am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" \
LTLIBRARIES = $(lib_LTLIBRARIES)
libhdf5_cpp_la_DEPENDENCIES = $(LIBHDF5)
am_libhdf5_cpp_la_OBJECTS = H5Exception.lo H5IdComponent.lo \
- H5Library.lo H5Attribute.lo H5Object.lo H5PropList.lo \
- H5FaccProp.lo H5FcreatProp.lo H5DcreatProp.lo H5DxferProp.lo \
- H5DataType.lo H5DataSpace.lo H5AbstractDs.lo H5AtomType.lo \
- H5PredType.lo H5EnumType.lo H5IntType.lo H5FloatType.lo \
- H5StrType.lo H5ArrayType.lo H5VarLenType.lo H5CompType.lo \
- H5DataSet.lo H5CommonFG.lo H5Group.lo H5File.lo
+ H5Library.lo H5Attribute.lo H5Location.lo H5Object.lo \
+ H5PropList.lo H5FaccProp.lo H5FcreatProp.lo H5DcreatProp.lo \
+ H5DxferProp.lo H5DataType.lo H5DataSpace.lo H5AbstractDs.lo \
+ H5AtomType.lo H5PredType.lo H5EnumType.lo H5IntType.lo \
+ H5FloatType.lo H5StrType.lo H5ArrayType.lo H5VarLenType.lo \
+ H5CompType.lo H5DataSet.lo H5CommonFG.lo H5Group.lo H5File.lo
libhdf5_cpp_la_OBJECTS = $(am_libhdf5_cpp_la_OBJECTS)
AM_V_lt = $(am__v_lt_@AM_V@)
am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
@@ -249,6 +249,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -263,6 +264,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -459,7 +461,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
# Include src directory
@@ -474,12 +476,12 @@ bin_SCRIPTS = h5c++
# Source files for the library
libhdf5_cpp_la_SOURCES = H5Exception.cpp H5IdComponent.cpp H5Library.cpp \
- H5Attribute.cpp H5Object.cpp H5PropList.cpp H5FaccProp.cpp \
- H5FcreatProp.cpp H5DcreatProp.cpp H5DxferProp.cpp H5DataType.cpp \
- H5DataSpace.cpp H5AbstractDs.cpp H5AtomType.cpp H5PredType.cpp \
- H5EnumType.cpp H5IntType.cpp H5FloatType.cpp H5StrType.cpp \
- H5ArrayType.cpp H5VarLenType.cpp H5CompType.cpp H5DataSet.cpp \
- H5CommonFG.cpp H5Group.cpp H5File.cpp
+ H5Attribute.cpp H5Location.cpp H5Object.cpp H5PropList.cpp \
+ H5FaccProp.cpp H5FcreatProp.cpp H5DcreatProp.cpp H5DxferProp.cpp \
+ H5DataType.cpp H5DataSpace.cpp H5AbstractDs.cpp H5AtomType.cpp \
+ H5PredType.cpp H5EnumType.cpp H5IntType.cpp H5FloatType.cpp \
+ H5StrType.cpp H5ArrayType.cpp H5VarLenType.cpp H5CompType.cpp \
+ H5DataSet.cpp H5CommonFG.cpp H5Group.cpp H5File.cpp
# HDF5 C++ library depends on HDF5 Library.
@@ -490,8 +492,9 @@ include_HEADERS = H5Cpp.h H5AbstractDs.h H5AtomType.h H5Attribute.h H5Classes.h
H5CommonFG.h H5CompType.h H5DataSet.h H5DataSpace.h H5DataType.h \
H5DcreatProp.h H5DxferProp.h H5EnumType.h H5Exception.h H5FaccProp.h \
H5FcreatProp.h H5File.h H5FloatType.h H5Group.h H5IdComponent.h \
- H5Include.h H5IntType.h H5Library.h H5Object.h H5PredType.h \
- H5PropList.h H5StrType.h H5CppDoc.h H5ArrayType.h H5VarLenType.h
+ H5Include.h H5IntType.h H5Library.h H5Location.h H5Object.h \
+ H5PredType.h H5PropList.h H5StrType.h H5CppDoc.h H5ArrayType.h \
+ H5VarLenType.h
# h5c++ and libhdf5.settings are generated during configure. Remove only when
@@ -656,6 +659,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5IdComponent.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5IntType.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Library.Plo@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Location.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5Object.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5PredType.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5PropList.Plo@am__quote@
diff --git a/c++/src/h5c++.in b/c++/src/h5c++.in
index 20435eb..e0ee8af 100644
--- a/c++/src/h5c++.in
+++ b/c++/src/h5c++.in
@@ -100,6 +100,10 @@ CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
LIBS="${HDF5_LIBS:-$LIBSBASE}"
+# If static was disabled, @HDF5_USE_SHLIB@ will be yes. In that case
+# HDF5_USE_SHLIB should be set to yes because there are no static
+# lib files.
+HDF5_USE_SHLIB="@HDF5_USE_SHLIB@"
USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
usage() {
diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in
index 5d2da53..7468473 100644
--- a/c++/test/Makefile.in
+++ b/c++/test/Makefile.in
@@ -210,6 +210,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -224,6 +225,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/c++/test/dsets.cpp b/c++/test/dsets.cpp
index 26abace..e822b36 100644
--- a/c++/test/dsets.cpp
+++ b/c++/test/dsets.cpp
@@ -61,7 +61,6 @@ const int H5Z_FILTER_BOGUS = 305;
static size_t filter_bogus(unsigned int flags, size_t cd_nelmts,
const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf);
-
/*-------------------------------------------------------------------------
* Function: test_create
*
@@ -179,7 +178,7 @@ test_create( H5File& file)
return -1;
}
} // test_create
-
+
/*-------------------------------------------------------------------------
* Function: test_simple_io
*
@@ -266,7 +265,7 @@ test_simple_io( H5File& file)
return -1;
}
} // test_simple_io
-
+
/*-------------------------------------------------------------------------
* Function: test_datasize
*
@@ -337,7 +336,7 @@ test_datasize()
return -1;
}
} // test_datasize
-
+
/*-------------------------------------------------------------------------
* Function: test_tconv
*
@@ -460,7 +459,6 @@ filter_bogus(unsigned int flags, size_t cd_nelmts,
return nbytes;
}
-
/*-------------------------------------------------------------------------
* Function: test_compression
*
@@ -830,7 +828,6 @@ test_multiopen (H5File& file)
}
} // test_multiopen
-
/*-------------------------------------------------------------------------
* Function: test_types
*
@@ -1019,7 +1016,7 @@ test_types(H5File& file)
return -1;
}
} // test_types
-
+
/*-------------------------------------------------------------------------
* Function: test_dset
*
diff --git a/c++/test/h5cpputil.cpp b/c++/test/h5cpputil.cpp
index 4485808..c6a7a2a 100644
--- a/c++/test/h5cpputil.cpp
+++ b/c++/test/h5cpputil.cpp
@@ -100,6 +100,7 @@ void issue_fail_msg(const char* where, int line, const char* file_name,
{
//if (GetTestVerbosity()>=VERBO_HI)
{
+ cerr << endl;
cerr << ">>> FAILED in " << where << " at line " << line
<< " in " << file_name << " - " << message << endl << endl;
}
diff --git a/c++/test/tattr.cpp b/c++/test/tattr.cpp
index 6bb9ca0..6f7674d 100644
--- a/c++/test/tattr.cpp
+++ b/c++/test/tattr.cpp
@@ -42,8 +42,13 @@
#include "h5cpputil.h" // C++ utilility header file
-const H5std_string FILENAME("tattr.h5");
-const H5std_string ATTR_TMP_NAME("temp_name");
+const H5std_string FILE_BASIC("tattr_basic.h5");
+const H5std_string FILE_COMPOUND("tattr_compound.h5");
+const H5std_string FILE_SCALAR("tattr_scalar.h5");
+const H5std_string FILE_MULTI("tattr_multi.h5");
+const H5std_string FILE_DTYPE("tattr_dtype.h5");
+const H5std_string ATTR_TMP_NAME("temp_attr_name");
+const H5std_string FATTR_TMP_NAME("temp_fattr_name");
const size_t ATTR_MAX_DIMS = 7;
/* 3-D dataset with fixed dimensions */
@@ -63,6 +68,10 @@ const int ATTR1_RANK = 1;
const int ATTR1_DIM1 = 3;
int attr_data1[ATTR1_DIM1]={512,-234,98123}; /* Test data for 1st attribute */
+// File attribute, using the same rank and dimensions as ATTR1_NAME's
+const H5std_string FATTR1_NAME("File Attr1");
+const H5std_string FATTR2_NAME("File Attr2");
+
const H5std_string ATTR2_NAME("Attr2");
const int ATTR2_RANK = 2;
const int ATTR2_DIM1 = 2;
@@ -121,7 +130,7 @@ static void test_attr_basic_write()
try {
// Create file
- H5File fid1 (FILENAME, H5F_ACC_TRUNC);
+ H5File fid1 (FILE_BASIC, H5F_ACC_TRUNC);
// Create dataspace for dataset
DataSpace ds_space (SPACE1_RANK, dims1);
@@ -136,6 +145,12 @@ static void test_attr_basic_write()
// Create dataspace for attribute
DataSpace att_space (ATTR1_RANK, dims2);
+ // Create a file attribute
+ Attribute file_attr2 = fid1.createAttribute (FATTR1_NAME, PredType::NATIVE_INT, att_space);
+
+ // Create a file attribute
+ Attribute file_attr1 = fid1.createAttribute (FATTR2_NAME, PredType::NATIVE_INT, att_space);
+
// Create an attribute for the dataset
Attribute ds_attr1 = dataset.createAttribute (ATTR1_NAME, PredType::NATIVE_INT, att_space);
@@ -163,8 +178,9 @@ static void test_attr_basic_write()
if(attr_data1[i]!=read_data1[i])
TestErrPrintf("%d: attribute data different: attr_data1[%d]=%d,read_data1[%d]=%d\n",__LINE__,i,attr_data1[i],i,read_data1[i]);
- // Create another attribute for this dataset
- Attribute ds_attr2 = dataset.createAttribute (ATTR1A_NAME, PredType::NATIVE_INT, att_space);
+ // Create two more attributes for this dataset, but only write to one.
+ Attribute ds_attr2 = dataset.createAttribute (ATTR2_NAME, PredType::NATIVE_INT, att_space);
+ Attribute ds_attr3 = dataset.createAttribute (ATTR3_NAME, PredType::NATIVE_INT, att_space);
// Write attribute information
ds_attr2.write (PredType::NATIVE_INT, attr_data1a);
@@ -180,6 +196,7 @@ static void test_attr_basic_write()
// Close both attributes
ds_attr1.close();
ds_attr2.close();
+ ds_attr3.close();
/*
* Test attribute with group
@@ -240,14 +257,32 @@ static void test_attr_rename()
try {
// Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
+
+ // Check rename of attribute belonging to a file
+
+ // Change attribute name
+ fid1.renameAttr(FATTR1_NAME, FATTR_TMP_NAME);
+
+ // Open attribute again
+ Attribute fattr1(fid1.openAttribute(FATTR_TMP_NAME));
+
+ // Verify new attribute name
+ H5std_string fattr_name = fattr1.getName();
+ verify_val(fattr_name, FATTR_TMP_NAME, "Attribute::getName", __LINE__, __FILE__);
+
+ int num_attrs = fid1.getNumAttrs();
+ verify_val(num_attrs, 2, "Attribute::getNumAttrs", __LINE__, __FILE__);
+
+ // Change first file attribute back to the original name
+ fid1.renameAttr(FATTR_TMP_NAME, FATTR1_NAME);
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
- // Check rename
+ // Check rename of attribute belonging to a dataset
- // change attribute name
+ // Change attribute name
dataset.renameAttr(ATTR1_NAME, ATTR_TMP_NAME);
// Open attribute again
@@ -269,11 +304,11 @@ static void test_attr_rename()
attr1.close();
// Open the second attribute
- Attribute attr2(dataset.openAttribute(ATTR1A_NAME));
+ Attribute attr2(dataset.openAttribute(ATTR2_NAME));
// Verify second attribute name
H5std_string attr2_name = attr2.getName();
- verify_val(attr2_name, ATTR1A_NAME, "Attribute::getName", __LINE__, __FILE__);
+ verify_val(attr2_name, ATTR2_NAME, "Attribute::getName", __LINE__, __FILE__);
// Read attribute information immediately, without closing attribute
attr2.read (PredType::NATIVE_INT, read_data1);
@@ -311,14 +346,14 @@ static void test_attr_basic_read()
try {
// Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
// Verify the correct number of attributes
int num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 2, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Open an attribute for the dataset
Attribute ds_attr=dataset.openAttribute(ATTR1_NAME);
@@ -378,7 +413,7 @@ static void test_attr_compound_write()
try {
// Create file
- H5File fid1(FILENAME.c_str(), H5F_ACC_TRUNC);
+ H5File fid1(FILE_COMPOUND.c_str(), H5F_ACC_TRUNC);
// Create dataspace for dataset
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
@@ -442,14 +477,14 @@ static void test_attr_compound_read()
try {
// Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_COMPOUND, H5F_ACC_RDWR);
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
// Verify the correct number of attributes
int num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 1, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 1, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Open 1st attribute for the dataset
Attribute attr = dataset.openAttribute((unsigned)0);
@@ -571,7 +606,7 @@ static void test_attr_scalar_write()
try {
// Create file
- H5File fid1(FILENAME, H5F_ACC_TRUNC);
+ H5File fid1(FILE_SCALAR, H5F_ACC_TRUNC);
// Create dataspace for dataset
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
@@ -625,14 +660,14 @@ static void test_attr_scalar_read()
try {
// Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_SCALAR, H5F_ACC_RDWR);
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
// Verify the correct number of attributes
int num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 1, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 1, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Open an attribute for the dataset
Attribute ds_attr=dataset.openAttribute(ATTR5_NAME);
@@ -669,7 +704,7 @@ static void test_attr_mult_write()
try {
// Create file
- H5File fid1 (FILENAME, H5F_ACC_TRUNC);
+ H5File fid1 (FILE_MULTI, H5F_ACC_TRUNC);
// Create dataspace for dataset
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
@@ -746,14 +781,14 @@ static void test_attr_mult_read()
try {
// Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_MULTI, H5F_ACC_RDWR);
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
// Verify the correct number of attributes
int num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 3, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Open 1st attribute for the dataset
Attribute attr = dataset.openAttribute((unsigned)0);
@@ -929,22 +964,42 @@ static void test_attr_mult_read()
static void test_attr_delete()
{
H5std_string attr_name; // Buffer for attribute names
+ int ii;
- // Output message about test being performed
+ // Output message about test being performed
SUBTEST("Removing Attribute Function");
try {
- // Open file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ // Open file.
+ H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
+
+ // Get the number of file attributes
+ int num_attrs = fid1.getNumAttrs();
+ verify_val(num_attrs, 2, "H5File::getNumAttrs", __LINE__, __FILE__);
+
+ // Delete the second file attribute
+ fid1.removeAttr(FATTR2_NAME);
+
+ // Get the number of file attributes
+ num_attrs = fid1.getNumAttrs();
+ verify_val(num_attrs, 1, "H5File::getNumAttrs", __LINE__, __FILE__);
+
+ // Verify the name of the only file attribute left
+ Attribute fattr = fid1.openAttribute((uint)0);
+ H5std_string attr_name = fattr.getName();
+ verify_val(attr_name, FATTR1_NAME, "Attribute::getName", __LINE__, __FILE__);
+ fattr.close();
+
+ // Test deleting non-existing attribute
// Open the dataset
DataSet dataset = fid1.openDataSet(DSET1_NAME);
// Verify the correct number of attributes
- int num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 3, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ num_attrs = dataset.getNumAttrs();
+ verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__);
- // Try to delete bogus attribute, should fail.
+ // Try to delete bogus attribute, should fail
try {
dataset.removeAttr("Bogus");
@@ -954,16 +1009,18 @@ static void test_attr_delete()
catch (AttributeIException E) // catching invalid removing attribute
{} // do nothing, exception expected
+ // Test deleting dataset's attributes
+
// Verify the correct number of attributes
num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 3, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Delete middle (2nd) attribute
dataset.removeAttr(ATTR2_NAME);
// Verify the correct number of attributes
num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 2, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 2, "DataSet::getNumAttrs", __LINE__, __FILE__);
// Open 1st attribute for the dataset
Attribute attr = dataset.openAttribute((unsigned)0);
@@ -989,9 +1046,9 @@ static void test_attr_delete()
// Verify the correct number of attributes
num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 1, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 1, "DataSet::getNumAttrs", __LINE__, __FILE__);
- // Open last (formally 3rd) attribute for the dataset
+ // Open the only attribute for the dataset (formally 3rd)
attr = dataset.openAttribute((unsigned)0);
// Verify Name
@@ -1005,7 +1062,7 @@ static void test_attr_delete()
// Verify the correct number of attributes
num_attrs = dataset.getNumAttrs();
- verify_val(num_attrs, 0, "H5Object::getNumAttrs", __LINE__, __FILE__);
+ verify_val(num_attrs, 0, "DataSet::getNumAttrs", __LINE__, __FILE__);
PASSED();
} // end try block
@@ -1035,19 +1092,19 @@ static void test_attr_dtype_shared()
try {
// Create a file
- H5File fid1(FILENAME, H5F_ACC_TRUNC);
+ H5File fid1(FILE_DTYPE, H5F_ACC_TRUNC);
// Close file
fid1.close();
// Get size of file
h5_stat_size_t empty_filesize; // Size of empty file
- empty_filesize = h5_get_file_size(FILENAME.c_str(), H5P_DEFAULT);
+ empty_filesize = h5_get_file_size(FILE_DTYPE.c_str(), H5P_DEFAULT);
if (empty_filesize < 0)
TestErrPrintf("Line %d: file size wrong!\n", __LINE__);
// Open the file again
- fid1.openFile(FILENAME, H5F_ACC_RDWR);
+ fid1.openFile(FILE_DTYPE, H5F_ACC_RDWR);
// Enclosing to work around the issue of unused variables and/or
// objects created by copy constructors stay around until end of
@@ -1120,7 +1177,7 @@ static void test_attr_dtype_shared()
fid1.close();
// Open the file again
- fid1.openFile(FILENAME, H5F_ACC_RDWR);
+ fid1.openFile(FILE_DTYPE, H5F_ACC_RDWR);
{ // Second enclosed block...
@@ -1161,7 +1218,7 @@ static void test_attr_dtype_shared()
fid1.close();
// Check size of file
- filesize = h5_get_file_size(FILENAME.c_str(), H5P_DEFAULT);
+ filesize = h5_get_file_size(FILE_DTYPE.c_str(), H5P_DEFAULT);
verify_val((long)filesize, (long)empty_filesize, "Checking file size", __LINE__, __FILE__);
PASSED();
@@ -1192,7 +1249,7 @@ static void test_string_attr()
try {
// Create file
- H5File fid1(FILENAME, H5F_ACC_RDWR);
+ H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
//
// Fixed-lenth string attributes
@@ -1349,6 +1406,6 @@ extern "C"
#endif
void cleanup_attr()
{
- HDremove(FILENAME.c_str());
+ //HDremove(FILENAME.c_str());
}
diff --git a/c++/test/tfile.cpp b/c++/test/tfile.cpp
index df01752..ba38d7a 100644
--- a/c++/test/tfile.cpp
+++ b/c++/test/tfile.cpp
@@ -333,6 +333,7 @@ static void test_file_open()
tmpl1.getSymk( iparm1, iparm2);
verify_val(iparm1, F2_SYM_INTERN_K, "FileCreatPropList::getSymk", __LINE__, __FILE__);
verify_val(iparm2, F2_SYM_LEAF_K, "FileCreatPropList::getSymk", __LINE__, __FILE__);
+
PASSED();
} // end of try block
@@ -381,8 +382,16 @@ static void test_file_size()
hsize_t file_size = file4.getFileSize();
// Check if file size is reasonable. It's supposed to be 2KB now.
- if(file_size<1*KB || file_size>4*KB)
- issue_fail_msg("test_file_size()", __LINE__, __FILE__);
+ if (file_size < 1*KB || file_size > 4*KB)
+ issue_fail_msg("test_file_size()", __LINE__, __FILE__, "getFileSize() returned unreasonable value");
+
+ // Get the amount of free space in the file
+ hssize_t free_space = file4.getFreeSpace();
+
+ // Check if it's reasonable. It's 0 now.
+ if (free_space < 0 || free_space > 4*KB)
+ issue_fail_msg("test_file_size()", __LINE__, __FILE__, "getFreeSpace returned unreasonable value");
+
PASSED();
} // end of try block
@@ -415,7 +424,8 @@ const int NX = 4;
const int NY = 5;
const H5std_string GROUPNAME ("group");
const H5std_string DSETNAME ("dataset");
-const H5std_string ATTRNAME ("attribute");
+const H5std_string DATTRNAME ("dataset attribute");
+const H5std_string FATTRNAME ("file attribute");
const H5std_string DTYPENAME ("compound");
// Compound datatype
@@ -431,17 +441,17 @@ static void test_file_name()
H5std_string file_name;
try {
- // Create a file using default properties.
+ // Create a file using default properties
H5File file4(FILE4, H5F_ACC_TRUNC);
- // Get file name from the file instance.
+ // Get file name from the file instance
file_name = file4.getFileName();
verify_val(file_name, FILE4, "H5File::getFileName", __LINE__, __FILE__);
// Create a group in the root group
Group group(file4.createGroup(GROUPNAME, 0));
- // Get and verify file name
+ // Get and verify file name via a group
file_name = group.getFileName();
verify_val(file_name, FILE4, "Group::getFileName", __LINE__, __FILE__);
@@ -452,12 +462,12 @@ static void test_file_name()
// Create a new dataset
DataSet dataset(file4.createDataSet (DSETNAME, PredType::NATIVE_INT, space));
- // Get and verify file name
+ // Get and verify file name via a dataset
file_name = dataset.getFileName();
verify_val(file_name, FILE4, "DataSet::getFileName", __LINE__, __FILE__);
// Create an attribute for the dataset
- Attribute attr(dataset.createAttribute(ATTRNAME, PredType::NATIVE_INT, space));
+ Attribute attr(dataset.createAttribute(DATTRNAME, PredType::NATIVE_INT, space));
// Get and verify file name
file_name = attr.getFileName();
@@ -486,6 +496,116 @@ static void test_file_name()
} // test_file_name()
+#define NUM_OBJS 4
+#define NUM_ATTRS 3
+const int RANK1 = 1;
+const int ATTR1_DIM1 = 3;
+const H5std_string FILE5("tfattrs.h5");
+const H5std_string FATTR1_NAME ("file attribute 1");
+const H5std_string FATTR2_NAME ("file attribute 2");
+int fattr_data[ATTR1_DIM1]={512,-234,98123}; /* Test data for file attribute */
+int dattr_data[ATTR1_DIM1]={256,-123,1000}; /* Test data for dataset attribute */
+static void test_file_attribute()
+{
+ int rdata[ATTR1_DIM1];
+ int i;
+
+ // Output message about test being performed
+ SUBTEST("File Attribute");
+
+ H5std_string file_name;
+ try {
+ // Create a file using default properties.
+ H5File file5(FILE5, H5F_ACC_TRUNC);
+
+ // Create the data space
+ hsize_t dims[RANK1] = {ATTR1_DIM1};
+ DataSpace space(RANK1, dims);
+
+ // Create two attributes for the file
+ Attribute fattr1(file5.createAttribute(FATTR1_NAME, PredType::NATIVE_FLOAT, space));
+ Attribute fattr2(file5.createAttribute(FATTR2_NAME, PredType::NATIVE_INT, space));
+
+ fattr2.write(PredType::NATIVE_INT, fattr_data);
+
+ try {
+ // Try to create the same attribute again (should fail)
+ Attribute fattr_dup(file5.createAttribute(FATTR2_NAME, PredType::NATIVE_INT, space));
+ // Should FAIL but didn't, so throw an invalid action exception
+ throw InvalidActionException("H5File createAttribute", "Attempted to create an existing attribute.");
+ }
+ catch( AttributeIException E ) // catch creating existing attribute
+ {} // do nothing, FAIL expected
+
+ // Create a new dataset
+ DataSet dataset(file5.createDataSet (DSETNAME, PredType::NATIVE_INT, space));
+
+ // Create an attribute for the dataset
+ Attribute dattr(dataset.createAttribute(DATTRNAME, PredType::NATIVE_INT, space));
+
+ // Write data to the second file attribute
+ dattr.write(PredType::NATIVE_INT, dattr_data);
+
+ // Test flushing out the data from the attribute object
+ dattr.flush(H5F_SCOPE_GLOBAL);
+
+ // Get and verify the number of all objects in the file
+ // Current: 1 file, 2 file attr, 1 ds, and 1 ds attr.
+ ssize_t num_objs = file5.getObjCount(H5F_OBJ_ALL);
+ verify_val(num_objs, 5, "H5File::getObjCount", __LINE__, __FILE__);
+
+ num_objs = file5.getObjCount(H5F_OBJ_GROUP);
+ verify_val(num_objs, 0, "H5File::getObjCount(H5F_OBJ_GROUP)", __LINE__, __FILE__);
+ num_objs = file5.getObjCount(H5F_OBJ_DATASET);
+ verify_val(num_objs, 1, "H5File::getObjCount(H5F_OBJ_DATASET)", __LINE__, __FILE__);
+ num_objs = file5.getObjCount(H5F_OBJ_ATTR);
+ verify_val(num_objs, 3, "H5File::getObjCount(H5F_OBJ_ATTR)", __LINE__, __FILE__);
+ num_objs = file5.getObjCount(H5F_OBJ_DATATYPE);
+ verify_val(num_objs, 0, "H5File::getObjCount(H5F_OBJ_DATATYPE)", __LINE__, __FILE__);
+ num_objs = file5.getObjCount(H5F_OBJ_FILE);
+ verify_val(num_objs, 1, "H5File::getObjCount(H5F_OBJ_FILE)", __LINE__, __FILE__);
+
+ // Get the file name using the attributes
+ H5std_string fname = fattr1.getFileName();
+ verify_val(fname, FILE5, "H5File::getFileName()", __LINE__, __FILE__);
+
+ fname.clear();
+ fname = dattr.getFileName();
+ verify_val(fname, FILE5, "H5File::getFileName()", __LINE__, __FILE__);
+
+ // Get the class of a file attribute's datatype
+ H5T_class_t atclass = fattr1.getTypeClass();
+ verify_val(atclass, H5T_FLOAT, "Attribute::getTypeClass()", __LINE__, __FILE__);
+
+ // Get and verify the number of attributes attached to a file
+ int n_attrs = file5.getNumAttrs();
+ verify_val(n_attrs, 2, "H5File::getNumAttrs()", __LINE__, __FILE__);
+
+ // Get and verify the number of attributes attached to a dataset
+ n_attrs = 0;
+ n_attrs = dataset.getNumAttrs();
+ verify_val(n_attrs, 1, "DataSet::getNumAttrs()", __LINE__, __FILE__);
+
+ // Read back attribute's data
+ HDmemset(rdata, 0, sizeof(rdata));
+ dattr.read(PredType::NATIVE_INT, rdata);
+ /* Check results */
+ for (i = 0; i < ATTR1_DIM1; i++) {
+ if (rdata[i] != dattr_data[i]) {
+ H5_FAILED();
+ cerr << endl;
+ cerr << "element [" << i << "] is " << rdata[i] <<
+ "but should have been " << dattr_data[i] << endl;
+ }
+ }
+ PASSED();
+ } // end of try block
+
+ catch (Exception E) {
+ issue_fail_msg("test_file_name()", __LINE__, __FILE__, E.getCDetailMsg());
+ }
+} // test_file_attribute()
+
/*-------------------------------------------------------------------------
* Function: test_file
*
@@ -513,6 +633,7 @@ void test_file()
test_file_open(); // Test file opening
test_file_size(); // Test file size
test_file_name(); // Test getting file's name
+ test_file_attribute(); // Test file attribute feature
} // test_file()
diff --git a/c++/test/th5s.cpp b/c++/test/th5s.cpp
index 221a61b..32c40d5 100644
--- a/c++/test/th5s.cpp
+++ b/c++/test/th5s.cpp
@@ -188,7 +188,7 @@ static void test_h5s_basic()
* If this test fails and the H5S_MAX_RANK variable has changed, follow
* the instructions in space_overflow.c for regenating the th5s.h5 file.
*/
- const char *testfile = H5_get_srcdir_filename(TESTFILE.c_str());
+ const char *testfile = H5_get_srcdir_filename(TESTFILE.c_str());
// Create file
H5File fid1(testfile, H5F_ACC_RDONLY);
diff --git a/c++/test/trefer.cpp b/c++/test/trefer.cpp
index 7f63d33..4eb5b21 100644
--- a/c++/test/trefer.cpp
+++ b/c++/test/trefer.cpp
@@ -149,34 +149,25 @@ static void test_reference_obj(void)
// Create a dataset
dataset = file1->createDataSet("Dataset3", PredType::STD_REF_OBJ, sid1);
- // Create reference to dataset
+ // Create reference to dataset and test getRefObjType
file1->reference(&wbuf[0], "/Group1/Dataset1");
+ H5O_type_t refobj_type = dataset.getRefObjType(&wbuf[0], H5R_OBJECT);
+ verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- H5G_obj_t obj_type = dataset.getObjType(&wbuf[0], H5R_OBJECT);
- verify_val(obj_type, H5G_DATASET, "DataSet::getObjType", __LINE__, __FILE__);
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
-
- // Create reference to dataset
+ // Create reference to dataset and test getRefObjType
file1->reference(&wbuf[1], "/Group1/Dataset2");
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- obj_type = dataset.getObjType(&wbuf[1], H5R_OBJECT);
- verify_val(obj_type, H5G_DATASET, "DataSet::getObjType", __LINE__, __FILE__);
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
+ refobj_type = dataset.getRefObjType(&wbuf[1], H5R_OBJECT);
+ verify_val(refobj_type, H5O_TYPE_DATASET, "DataSet::getRefObjType", __LINE__, __FILE__);
// Create reference to group
file1->reference(&wbuf[2], "/Group1");
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- obj_type = dataset.getObjType(&wbuf[2], H5R_OBJECT);
- verify_val(obj_type, H5G_GROUP, "DataSet::getObjType", __LINE__, __FILE__);
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
+ refobj_type = dataset.getRefObjType(&wbuf[2], H5R_OBJECT);
+ verify_val(refobj_type, H5O_TYPE_GROUP, "DataSet::getRefObjType", __LINE__, __FILE__);
// Create reference to named datatype
file1->reference(&wbuf[3], "/Group1/Datatype1");
-#ifndef H5_NO_DEPRECATED_SYMBOLS
- obj_type = dataset.getObjType(&wbuf[3], H5R_OBJECT);
- verify_val(obj_type, H5G_TYPE, "DataSet::getObjType", __LINE__, __FILE__);
-#endif /* H5_NO_DEPRECATED_SYMBOLS */
+ refobj_type = dataset.getRefObjType(&wbuf[3], H5R_OBJECT);
+ verify_val(refobj_type, H5O_TYPE_NAMED_DATATYPE, "DataSet::getRefObjType", __LINE__, __FILE__);
// Write selection to disk
dataset.write(wbuf, PredType::STD_REF_OBJ);
@@ -253,7 +244,7 @@ static void test_reference_obj(void)
// Test getting the type of objects
// Test getObjTypeByIdx(hsize_t idx)
- obj_type = group.getObjTypeByIdx(0);
+ H5G_obj_t obj_type = group.getObjTypeByIdx(0);
verify_val(obj_type, H5G_DATASET, "Group::getObjTypeByIdx(index)", __LINE__, __FILE__);
// Test getObjTypeByIdx(hsize_t idx, char* type_name)
@@ -333,6 +324,18 @@ static void test_reference_obj(void)
/****************************************************************
**
+** test_reference_compat(): Test basic object reference functionality.
+** Tests references to various kinds of objects using deprecated API.
+**
+****************************************************************/
+static void test_reference_compat(void)
+{
+ // Not yet
+} // test_reference_compat()
+
+
+/****************************************************************
+**
** test_reference(): Main reference testing routine.
**
****************************************************************/
@@ -346,6 +349,7 @@ void test_reference(void)
MESSAGE(5, ("Testing References\n"));
test_reference_obj(); // Test basic object reference functionality
+ test_reference_compat(); // Tests deprecated reference routines (not yet)
} // test_reference()
diff --git a/config/ibm-aix b/config/ibm-aix
index c8b1fc3..28498e2 100644
--- a/config/ibm-aix
+++ b/config/ibm-aix
@@ -56,12 +56,12 @@ fi
# to ensure the flag is present for both configure as well as for the build.
if test "X-" = "X-$f9x_flags_set"; then
F9XSUFFIXFLAG="-qsuffix=f=f90"
- FCFLAGS="$FCFLAGS -O ${F9XSUFFIXFLAG}"
- H5_FCFLAGS="$H5_FCFLAGS -O ${F9XSUFFIXFLAG}"
+ FCFLAGS="$FCFLAGS ${F9XSUFFIXFLAG}"
+ H5_FCFLAGS="$H5_FCFLAGS ${F9XSUFFIXFLAG}"
FSEARCH_DIRS="-I./ -I../src"
- DEBUG_FCFLAGS="-O"
+ DEBUG_FCFLAGS="-g"
PROD_FCFLAGS="-O"
- PROFILE_FCFLAGS="-O"
+ PROFILE_FCFLAGS="-g -pg"
f9x_flags_set=yes
fi
diff --git a/config/lt_vers.am b/config/lt_vers.am
index 9abc39d..53af6ed 100644
--- a/config/lt_vers.am
+++ b/config/lt_vers.am
@@ -17,7 +17,7 @@
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
## If the API changes *at all*, increment LT_VERS_INTERFACE and
diff --git a/configure b/configure
index e9996eb..b678d0b 100755
--- a/configure
+++ b/configure
@@ -1,7 +1,7 @@
#! /bin/sh
# From configure.ac Id: configure.ac 22697 2012-08-19 14:35:47Z hdftest .
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for HDF5 1.9.131.
+# Generated by GNU Autoconf 2.69 for HDF5 1.9.132.
#
# Report bugs to <help@hdfgroup.org>.
#
@@ -591,8 +591,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='HDF5'
PACKAGE_TARNAME='hdf5'
-PACKAGE_VERSION='1.9.131'
-PACKAGE_STRING='HDF5 1.9.131'
+PACKAGE_VERSION='1.9.132'
+PACKAGE_STRING='HDF5 1.9.132'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_URL=''
@@ -771,6 +771,8 @@ ac_ct_CC
LDFLAGS
CFLAGS
CC
+HDF5_USE_SHLIB
+H5BLD_STATIC
UNAME_INFO
enable_static
enable_shared
@@ -1484,7 +1486,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures HDF5 1.9.131 to adapt to many kinds of systems.
+\`configure' configures HDF5 1.9.132 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1554,7 +1556,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of HDF5 1.9.131:";;
+ short | recursive ) echo "Configuration of HDF5 1.9.132:";;
esac
cat <<\_ACEOF
@@ -1750,7 +1752,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-HDF5 configure 1.9.131
+HDF5 configure 1.9.132
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2844,7 +2846,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by HDF5 $as_me 1.9.131, which was
+It was created by HDF5 $as_me 1.9.132, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@@ -3676,7 +3678,7 @@ fi
# Define the identity of the package.
PACKAGE='hdf5'
- VERSION='1.9.131'
+ VERSION='1.9.132'
cat >>confdefs.h <<_ACEOF
@@ -3997,6 +3999,13 @@ $as_echo "done" >&6; }
UNAME_INFO=`uname -a`
+## Define symbol variables to allow h5cc.in and its companions to determine
+## whether static libraries are built or not. When they are not built, the
+## compile scripts should use shared libraries by default
+
+ H5BLD_STATIC=yes
+
+
## ----------------------------------------------------------------------
## Some platforms have broken basename, and/or xargs programs. Check
## that it actually does what it's supposed to do. Catch this early
@@ -31084,6 +31093,14 @@ fi
## Build the Makefiles.
##
+## If $enable_static = "no", set HDF5_USE_SHLIB to "yes" so that the compile
+## scripts will default to use shared libraries instead of defaulting to
+## use static libraries. Otherwise they fail because the static libraries
+## don't exist.
+if test "X$enable_static" = "Xno"; then
+ HDF5_USE_SHLIB="yes"
+fi
+
## The directory search list
SEARCH='$(srcdir) $(top_builddir)/src $(top_srcdir)/src'
cmd='echo $SEARCH |sed "s/ /'$SEARCH_SEP'/g"'
@@ -31715,7 +31732,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by HDF5 $as_me 1.9.131, which was
+This file was extended by HDF5 $as_me 1.9.132, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@@ -31781,7 +31798,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-HDF5 config.status 1.9.131
+HDF5 config.status 1.9.132
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"
@@ -34554,7 +34571,7 @@ Usage: $0 [OPTIONS]
Report bugs to <bug-libtool@gnu.org>."
lt_cl_version="\
-HDF5 config.lt 1.9.131
+HDF5 config.lt 1.9.132
configured by $0, generated by GNU Autoconf 2.69.
Copyright (C) 2011 Free Software Foundation, Inc.
diff --git a/configure.ac b/configure.ac
index 7f75326..96d04f2 100644
--- a/configure.ac
+++ b/configure.ac
@@ -26,7 +26,7 @@ AC_PREREQ([2.69])
## NOTE: Do not forget to change the version number here when we do a
## release!!!
##
-AC_INIT([HDF5], [1.9.131], [help@hdfgroup.org])
+AC_INIT([HDF5], [1.9.132], [help@hdfgroup.org])
AC_CONFIG_SRCDIR([src/H5.c])
AC_CONFIG_HEADER([src/H5config.h])
@@ -194,6 +194,13 @@ AC_SUBST([enable_shared])
AC_SUBST([enable_static])
AC_SUBST([UNAME_INFO]) UNAME_INFO=`uname -a`
+## Define symbol variables to allow h5cc.in and its companions to determine
+## whether static libraries are built or not. When they are not built, the
+## compile scripts should use shared libraries by default
+
+AC_SUBST([H5BLD_STATIC]) H5BLD_STATIC=yes
+AC_SUBST([HDF5_USE_SHLIB])
+
## ----------------------------------------------------------------------
## Some platforms have broken basename, and/or xargs programs. Check
## that it actually does what it's supposed to do. Catch this early
@@ -4369,6 +4376,14 @@ AM_CONDITIONAL([BUILD_HDF5_HL_CONDITIONAL], [test "X$HDF5_HL" = "Xyes"])
## Build the Makefiles.
##
+## If $enable_static = "no", set HDF5_USE_SHLIB to "yes" so that the compile
+## scripts will default to use shared libraries instead of defaulting to
+## use static libraries. Otherwise they fail because the static libraries
+## don't exist.
+if test "X$enable_static" = "Xno"; then
+ HDF5_USE_SHLIB="yes"
+fi
+
## The directory search list
AC_SUBST([SEARCH]) SEARCH='$(srcdir) $(top_builddir)/src $(top_srcdir)/src'
cmd='echo $SEARCH |sed "s/ /'$SEARCH_SEP'/g"'
diff --git a/examples/Makefile.in b/examples/Makefile.in
index fc0f541..fa42f22 100644
--- a/examples/Makefile.in
+++ b/examples/Makefile.in
@@ -177,6 +177,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -191,6 +192,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/fortran/Makefile.in b/fortran/Makefile.in
index c4597cc..9923f85 100644
--- a/fortran/Makefile.in
+++ b/fortran/Makefile.in
@@ -214,6 +214,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -228,6 +229,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in
index d19d231..e38919e 100644
--- a/fortran/examples/Makefile.in
+++ b/fortran/examples/Makefile.in
@@ -185,6 +185,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -199,6 +200,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/fortran/src/H5FDmpiof.c b/fortran/src/H5FDmpiof.c
index 89b4180..993b5ac 100644
--- a/fortran/src/H5FDmpiof.c
+++ b/fortran/src/H5FDmpiof.c
@@ -300,3 +300,40 @@ nh5pget_fapl_mpiposix_c(hid_t_f *prp_id, int_f* comm, int_f* flag)
ret_value = 0;
return ret_value;
}
+
+/****if* H5Pf/h5pget_mpio_actual_io_mode_c
+ * NAME
+ * h5pget_mpio_actual_io_mode_c
+ * PURPOSE
+ * Calls H5Pget_mpio_actual_io_mode
+ *
+ * INPUTS
+ * dxpl_id - Dataset transfer property list identifier.
+ * OUTPUTS
+ * actual_io_mode - The type of I/O performed by this process.
+ *
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * July 27, 2012
+ * SOURCE
+*/
+int_f
+nh5pget_mpio_actual_io_mode_c(hid_t_f *dxpl_id, int_f *actual_io_mode)
+/******/
+{
+ int ret_value = -1;
+ H5D_mpio_actual_io_mode_t c_actual_io_mode;
+
+ /*
+ * Call H5Pget_mpio_actual_io_mode_f function.
+ */
+ if( (H5Pget_mpio_actual_io_mode((hid_t)*dxpl_id, &c_actual_io_mode)) <0 )
+ return ret_value; /* error occurred */
+
+ *actual_io_mode =(int_f)c_actual_io_mode;
+
+ ret_value = 0;
+ return ret_value;
+}
diff --git a/fortran/src/H5FDmpioff.f90 b/fortran/src/H5FDmpioff.f90
index ea9283c..f6f3108 100644
--- a/fortran/src/H5FDmpioff.f90
+++ b/fortran/src/H5FDmpioff.f90
@@ -234,4 +234,49 @@ CONTAINS
IF (flag .EQ. 1) use_gpfs = .TRUE.
END SUBROUTINE h5pget_fapl_mpiposix_f
+
+!****s* H5P/h5pget_mpio_actual_io_mode_f
+! NAME
+! h5pget_mpio_actual_io_mode_f
+!
+! PURPOSE
+! Retrieves the type of I/O that HDF5 actually performed on the last
+! parallel I/O call. This is not necessarily the type of I/O requested.
+!
+! INPUTS
+! dxpl_id - Dataset transfer property list identifier.
+! OUTPUTS
+! actual_io_mode - The type of I/O performed by this process.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! July 27, 2012
+!
+! HISTORY
+!
+! Fortran90 Interface:
+ SUBROUTINE h5pget_mpio_actual_io_mode_f(dxpl_id, actual_io_mode, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: dxpl_id
+ INTEGER , INTENT(OUT) :: actual_io_mode
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ INTERFACE
+ INTEGER FUNCTION h5pget_mpio_actual_io_mode_c(dxpl_id, actual_io_mode)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5PGET_MPIO_ACTUAL_IO_MODE_C'::h5pget_mpio_actual_io_mode_c
+ !DEC$ENDIF
+ INTEGER(HID_T), INTENT(IN) :: dxpl_id
+ INTEGER , INTENT(OUT) :: actual_io_mode
+ END FUNCTION h5pget_mpio_actual_io_mode_c
+ END INTERFACE
+
+ actual_io_mode = -1
+
+ hdferr = h5pget_mpio_actual_io_mode_c(dxpl_id, actual_io_mode)
+
+ END SUBROUTINE h5pget_mpio_actual_io_mode_f
+
END MODULE H5FDMPIO
diff --git a/fortran/src/H5Gff.f90 b/fortran/src/H5Gff.f90
index 6bcee7c..155185a 100644
--- a/fortran/src/H5Gff.f90
+++ b/fortran/src/H5Gff.f90
@@ -927,7 +927,7 @@ CONTAINS
! Buffer to hold a comment
INTEGER, INTENT(OUT) :: hdferr ! Error code
!*****
- INTEGER :: namelen ! Lenghth of the current_name string
+ INTEGER :: namelen ! Length of the current_name string
INTERFACE
INTEGER FUNCTION h5gget_comment_c(loc_id, name, namelen, size, buffer)
diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c
index 531f09c..8e75989 100644
--- a/fortran/src/H5Of.c
+++ b/fortran/src/H5Of.c
@@ -24,6 +24,83 @@
#include "H5f90.h"
#include "H5Eprivate.h"
+int_f
+fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) {
+
+ struct tm *ts;
+
+ object_info->fileno = Oinfo.fileno;
+ object_info->addr = (haddr_t_f)Oinfo.addr;
+
+ object_info->type = (int_f)Oinfo.type;
+ object_info->rc = (int_f)Oinfo.rc;
+
+ ts = HDgmtime(&Oinfo.atime);
+
+ object_info->atime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
+ object_info->atime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
+ object_info->atime[2] = (int_f)ts->tm_mday;
+ object_info->atime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
+ object_info->atime[4] = (int_f)ts->tm_hour;
+ object_info->atime[5] = (int_f)ts->tm_min;
+ object_info->atime[6] = (int_f)ts->tm_sec;
+ object_info->atime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+
+ ts = HDgmtime(&Oinfo.btime);
+
+ object_info->btime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
+ object_info->btime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
+ object_info->btime[2] = (int_f)ts->tm_mday;
+ object_info->btime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
+ object_info->btime[4] = (int_f)ts->tm_hour;
+ object_info->btime[5] = (int_f)ts->tm_min;
+ object_info->btime[6] = (int_f)ts->tm_sec;
+ object_info->btime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+
+ ts = HDgmtime(&Oinfo.ctime);
+
+ object_info->ctime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
+ object_info->ctime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
+ object_info->ctime[2] = (int_f)ts->tm_mday;
+ object_info->ctime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
+ object_info->ctime[4] = (int_f)ts->tm_hour;
+ object_info->ctime[5] = (int_f)ts->tm_min;
+ object_info->ctime[6] = (int_f)ts->tm_sec;
+ object_info->ctime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+
+ ts = HDgmtime(&Oinfo.mtime);
+
+ object_info->mtime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
+ object_info->mtime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
+ object_info->mtime[2] = (int_f)ts->tm_mday;
+ object_info->mtime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
+ object_info->mtime[4] = (int_f)ts->tm_hour;
+ object_info->mtime[5] = (int_f)ts->tm_min;
+ object_info->mtime[6] = (int_f)ts->tm_sec;
+ object_info->mtime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+
+ object_info->num_attrs = (hsize_t_f)Oinfo.num_attrs;
+
+ object_info->hdr.version = (int_f)Oinfo.hdr.version;
+ object_info->hdr.nmesgs = (int_f)Oinfo.hdr.nmesgs;
+ object_info->hdr.nchunks = (int_f)Oinfo.hdr.nchunks;
+ object_info->hdr.flags = (int_f)Oinfo.hdr.flags;
+
+ object_info->hdr.space.total = (hsize_t_f)Oinfo.hdr.space.total;
+ object_info->hdr.space.meta = (hsize_t_f)Oinfo.hdr.space.meta;
+ object_info->hdr.space.mesg = (hsize_t_f)Oinfo.hdr.space.mesg;
+ object_info->hdr.space.free = (hsize_t_f)Oinfo.hdr.space.free;
+
+ object_info->hdr.mesg.present = Oinfo.hdr.mesg.present;
+ object_info->hdr.mesg.shared = Oinfo.hdr.mesg.shared;
+
+ object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size;
+ object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size;
+
+ return 0;
+
+}
+
/****if* H5Of/h5olink_c
* NAME
* h5olink_c
@@ -215,7 +292,7 @@ nh5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id)
return ret_value;
}
-/* ***if* H5Of/H5Oget_info_by_name_c
+/****if* H5Of/H5Oget_info_by_name_c
* NAME
* H5Oget_info_by_name_c
* PURPOSE
@@ -226,10 +303,7 @@ nh5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id)
* namelen - Name length.
* lapl_id - Link access property list.
* OUTPUTS
- * corder_valid - Indicates whether the the creation order data is valid for this attribute.
- * corder - Is a positive integer containing the creation order of the attribute.
- * cset - Indicates the character set used for the attribute’s name.
- * data_size - indicates the size, in the number of characters, of the attribute.
+ * object_info - Buffer in which to return object information.
*
* RETURNS
* 0 on success, -1 on failure
@@ -261,74 +335,100 @@ nh5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *
&Oinfo, (hid_t)*lapl_id) < 0)
HGOTO_DONE(FAIL);
- object_info->fileno = Oinfo.fileno;
- object_info->addr = (haddr_t_f)Oinfo.addr;
-
-
- object_info->type = (int_f)Oinfo.type;
- object_info->rc = (int_f)Oinfo.rc;
-
- ts = HDgmtime(&Oinfo.atime);
-
- object_info->atime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
- object_info->atime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
- object_info->atime[2] = (int_f)ts->tm_mday;
- object_info->atime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
- object_info->atime[4] = (int_f)ts->tm_hour;
- object_info->atime[5] = (int_f)ts->tm_min;
- object_info->atime[6] = (int_f)ts->tm_sec;
- object_info->atime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
-
- ts = HDgmtime(&Oinfo.btime);
-
- object_info->btime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
- object_info->btime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
- object_info->btime[2] = (int_f)ts->tm_mday;
- object_info->btime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
- object_info->btime[4] = (int_f)ts->tm_hour;
- object_info->btime[5] = (int_f)ts->tm_min;
- object_info->btime[6] = (int_f)ts->tm_sec;
- object_info->btime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+ ret_value = fill_h5o_info_t_f(Oinfo,object_info);
- ts = HDgmtime(&Oinfo.ctime);
-
- object_info->ctime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
- object_info->ctime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
- object_info->ctime[2] = (int_f)ts->tm_mday;
- object_info->ctime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
- object_info->ctime[4] = (int_f)ts->tm_hour;
- object_info->ctime[5] = (int_f)ts->tm_min;
- object_info->ctime[6] = (int_f)ts->tm_sec;
- object_info->ctime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+ done:
+ if(c_name)
+ HDfree(c_name);
+ return ret_value;
+}
- ts = HDgmtime(&Oinfo.mtime);
+/****if* H5Of/H5Oget_info_by_idx_c
+ * NAME
+ * H5Oget_info_by_idx_c
+ * PURPOSE
+ * Calls H5Oget_info_by_idx
+ * INPUTS
+ * loc_id - File or group identifier specifying location of group in which object is located.
+ * name - Name of group, relative to loc_id.
+ * namelen - Name length.
+ * lapl_id - Link access property list.
+ * OUTPUTS
+ * object_info - Buffer in which to return object information.
+ *
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * December 1, 2008
+ * SOURCE
+*/
+int_f
+nh5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info)
+/******/
+{
+ char *c_group_name = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+ H5O_info_t Oinfo;
+ H5_index_t c_index_field;
+ H5_iter_order_t c_order;
+
+ /*
+ * Convert FORTRAN name to C name
+ */
+ if((c_group_name = HD5f2cstring( group_name, (size_t)*namelen)) == NULL)
+ HGOTO_DONE(FAIL);
- object_info->mtime[0] = (int_f)ts->tm_year+1900; /* year starts at 1900 */
- object_info->mtime[1] = (int_f)ts->tm_mon+1; /* month starts at 0 in C */
- object_info->mtime[2] = (int_f)ts->tm_mday;
- object_info->mtime[3] = 0; /* time is expressed as UTC (or GMT timezone) */
- object_info->mtime[4] = (int_f)ts->tm_hour;
- object_info->mtime[5] = (int_f)ts->tm_min;
- object_info->mtime[6] = (int_f)ts->tm_sec;
- object_info->mtime[7] = -32767; /* millisecond is not available, assign it -HUGE(0) */
+ c_index_field = (H5_index_t)*index_field;
+ c_order = (H5_iter_order_t)*order;
- object_info->num_attrs = (hsize_t_f)Oinfo.num_attrs;
+ /*
+ * Call H5Oinfo_by_idx function.
+ */
+ if(H5Oget_info_by_idx((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n,
+ &Oinfo, (hid_t)*lapl_id) < 0)
+ HGOTO_DONE(FAIL);
- object_info->hdr.version = (int_f)Oinfo.hdr.version;
- object_info->hdr.nmesgs = (int_f)Oinfo.hdr.nmesgs;
- object_info->hdr.nchunks = (int_f)Oinfo.hdr.nchunks;
- object_info->hdr.flags = (int_f)Oinfo.hdr.flags;
+ ret_value = fill_h5o_info_t_f(Oinfo,object_info);
- object_info->hdr.space.total = (hsize_t_f)Oinfo.hdr.space.total;
- object_info->hdr.space.meta = (hsize_t_f)Oinfo.hdr.space.meta;
- object_info->hdr.space.mesg = (hsize_t_f)Oinfo.hdr.space.mesg;
- object_info->hdr.space.free = (hsize_t_f)Oinfo.hdr.space.free;
+ done:
+ if(c_group_name)
+ HDfree(c_group_name);
+ return ret_value;
+}
- object_info->hdr.mesg.present = Oinfo.hdr.mesg.present;
- object_info->hdr.mesg.shared = Oinfo.hdr.mesg.shared;
+/****if* H5Of/H5Oget_info_c
+ * NAME
+ * H5Oget_info_c
+ * PURPOSE
+ * Calls H5Oget_info
+ * INPUTS
+ * object_id - Identifier for target object.
+ * OUTPUTS
+ * object_info - Buffer in which to return object information.
+ *
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 16, 2012
+ * SOURCE
+*/
+int_f
+nh5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info)
+/******/
+{
+ int_f ret_value = 0; /* Return value */
+ H5O_info_t Oinfo;
+
+ /*
+ * Call H5Oinfo_by_name function.
+ */
+ if(H5Oget_info((hid_t)*object_id, &Oinfo) < 0)
+ HGOTO_DONE(FAIL);
- object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size;
- object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size;
+ ret_value = fill_h5o_info_t_f(Oinfo,object_info);
done:
return ret_value;
@@ -391,3 +491,428 @@ nh5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
return ret_value;
}
+
+/****if* H5Of/h5ovisit_by_name_c
+ * NAME
+ * h5ovisit_by_name_c
+ * PURPOSE
+ * Calls H5Ovisit_by_name
+ * INPUTS
+ * object_id - Identifier specifying subject group
+ * index_type - Type of index which determines the order
+ * order - Order within index
+ * idx - Iteration position at which to start
+ * op - Callback function passing data regarding the link to the calling application
+ * op_data - User-defined pointer to data required by the application for its processing of the link
+ *
+ * OUTPUTS
+ * idx - Position at which an interrupted iteration may be restarted
+ *
+ * RETURNS
+ * >0 on success, 0< on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 16, 2012
+ * SOURCE
+*/
+int_f
+nh5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order,
+ H5O_iterate_t op, void *op_data, hid_t_f *lapl_id )
+/******/
+{
+ int_f ret_value = -1; /* Return value */
+ herr_t func_ret_value; /* H5Linterate return value */
+ char *c_object_name = NULL; /* Buffer to hold C string */
+
+
+ /*
+ * Convert FORTRAN name to C name
+ */
+ if( (c_object_name = HD5f2cstring(object_name, (size_t)*namelen)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Ovisit
+ */
+ func_ret_value = H5Ovisit_by_name( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order,
+ op, op_data, (hid_t)*lapl_id);
+ ret_value = (int_f)func_ret_value;
+
+ done:
+ if(c_object_name)
+ HDfree(c_object_name);
+ return ret_value;
+
+}
+
+/****if* H5Of/h5odecr_refcount_c
+ * NAME
+ * h5odecr_refcount_c
+ * PURPOSE
+ * Calls H5Odecr_refcount
+ * INPUTS
+ * object_id - Object identifier.
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 16, 2012
+ * SOURCE
+*/
+int_f
+nh5odecr_refcount_c (hid_t_f *object_id)
+/******/
+{
+ int_f ret_value = 0; /* Return value */
+
+ /*
+ * Call H5Odecr_refcount function.
+ */
+ if((hid_t_f)H5Odecr_refcount((hid_t)*object_id) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ return ret_value;
+}
+
+/****if* H5Of/h5oexists_by_name_c
+ * NAME
+ * h5oexists_by_name_c
+ * PURPOSE
+ * Calls H5Oexists_by_name
+ * INPUTS
+ * loc_id - File or group identifier
+ * name - Attribute access property list
+ * namelen - Size of name
+ * lapl_id - Link access property list
+ *
+ * RETURNS
+ * link status: 0 = false, 1 = true, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 17, 2012
+ * SOURCE
+*/
+int_f
+nh5oexists_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id)
+/******/
+{
+ char *c_name = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+ htri_t status = 0;
+
+ /*
+ * Convert FORTRAN name to C name
+ */
+ if((c_name = HD5f2cstring(name, (size_t)*namelen)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Oopen function.
+ */
+ if((ret_value = (int_f)H5Oexists_by_name((hid_t)*loc_id, c_name, (hid_t)*lapl_id)) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ if(c_name)
+ HDfree(c_name);
+ return ret_value;
+}
+
+/****if* H5Of/h5oincr_refcount_c
+ * NAME
+ * h5oincr_refcount_c
+ * PURPOSE
+ * Calls H5Oincr_refcount
+ * INPUTS
+ * object_id - Object identifier.
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 16, 2012
+ * SOURCE
+*/
+int_f
+nh5oincr_refcount_c (hid_t_f *object_id)
+/******/
+{
+ int_f ret_value = 0; /* Return value */
+
+ /*
+ * Call H5Oincr_refcount function.
+ */
+ if((hid_t_f)H5Oincr_refcount((hid_t)*object_id) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ return ret_value;
+}
+
+/****if* H5Of/h5oset_comment_c
+ * NAME
+ * h5oset_comment_c
+ * PURPOSE
+ * Calls H5Oset_comment
+ * INPUTS
+ * object_id - Identifier of the target object.
+ * comment - The new comment.
+ * commentlen - Length of the comment.
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 17, 2012
+ * SOURCE
+*/
+int_f
+nh5oset_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentlen)
+/******/
+{
+ char *c_comment = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+
+ /*
+ * Convert FORTRAN string to C string
+ */
+ if((c_comment = HD5f2cstring(comment, (size_t)*commentlen)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Oset_comment function.
+ */
+ if((hid_t_f)H5Oset_comment((hid_t)*object_id, c_comment) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ if(c_comment)
+ HDfree(c_comment);
+ return ret_value;
+}
+
+/****if* H5Of/h5oset_comment_by_name_c
+ * NAME
+ * h5oset_comment_by_name_c
+ * PURPOSE
+ * Calls H5Oset_comment_by_name
+ * INPUTS
+ * object_id - Identifier of the target object.
+ * name - Name of the object whose comment is to be set or reset,
+ * specified as a path relative to loc_id.
+ * namelen - Length of the name.
+ * comment - The new comment.
+ * commentlen - Length of the comment.
+ * lapl_id - Link access property list identifier.
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 17, 2012
+ * SOURCE
+*/
+int_f
+nh5oset_comment_by_name_c (hid_t_f *object_id, _fcd name, size_t_f *namelen, _fcd comment, size_t_f *commentlen, hid_t_f *lapl_id)
+/******/
+{
+ char *c_comment = NULL; /* Buffer to hold C string */
+ char *c_name = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+
+ /*
+ * Convert FORTRAN string to C string
+ */
+ if((c_comment = HD5f2cstring(comment, (size_t)*commentlen)) == NULL)
+ HGOTO_DONE(FAIL);
+ /*
+ * Convert FORTRAN string to C string
+ */
+ if((c_name = HD5f2cstring(name, (size_t)*namelen)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Oset_comment_by_name function.
+ */
+ if((hid_t_f)H5Oset_comment_by_name((hid_t)*object_id, c_name, c_comment, (hid_t)*lapl_id) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ if(c_name)
+ HDfree(c_name);
+ if(c_comment)
+ HDfree(c_comment);
+ return ret_value;
+}
+/****if* H5Of/h5oopen_by_idx_c
+ * NAME
+ * h5oopen_by_idx_c
+ * PURPOSE
+ * Calls H5Oopen_by_idx_c
+ * INPUTS
+ * loc_id - A file or group identifier.
+ * group_name - Name of group, relative to loc_id, in which object is located.
+ * group_namelen - Length of group_name
+ * index_type - Type of index by which objects are ordered.
+ * order - Order of iteration within index.
+ * n - Object to open.
+ * lapl_id - Link access property list.
+ * OUTPUTS
+ * obj_id - An object identifier for the opened object.
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * May 17, 2012
+ * SOURCE
+*/
+int_f
+nh5oopen_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id)
+/******/
+{
+ char *c_group_name = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0;
+ H5_index_t c_index_type;
+ H5_iter_order_t c_order;
+
+ /*
+ * Convert FORTRAN string to C string
+ */
+ if((c_group_name = HD5f2cstring( group_name, (size_t)*group_namelen)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ c_index_type = (H5_index_t)*index_type;
+ c_order = (H5_iter_order_t)*order;
+
+ /*
+ * Call H5Oopen_by_idx function.
+ */
+ if((*obj_id =(hid_t_f)H5Oopen_by_idx((hid_t)*loc_id, c_group_name, c_index_type, c_order, (hsize_t)*n, (hid_t)*lapl_id)) < 0)
+ HGOTO_DONE(FAIL);
+
+ done:
+ if(c_group_name)
+ HDfree(c_group_name);
+ return ret_value;
+}
+
+/****if* H5Of/h5oget_comment_c
+ * NAME
+ * h5oget_comment_c
+ * PURPOSE
+ * Calls H5Oget_comment
+ * INPUTS
+ * object_id - Identifier for the target object.
+ * bufsize - Anticipated required size of the comment buffer.
+ * OUTPUTS
+ * comment - The comment.
+ *
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * June 24, 2012
+ * SOURCE
+*/
+int_f
+nh5oget_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssize_t_f *bufsize)
+/******/
+{
+ char *c_comment = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+ size_t c_commentsize;
+
+ c_commentsize = (size_t)*commentsize + 1;
+
+ /*
+ * Allocate buffer to hold comment name
+ */
+
+ if(NULL == (c_comment = (char *)HDmalloc(c_commentsize)))
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Oget_comment function.
+ */
+
+ if((*bufsize = (hssize_t_f)H5Oget_comment((hid_t)*object_id, c_comment, (size_t)*commentsize)) < 0)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Convert C name to FORTRAN and place it in the given buffer
+ */
+ if(c_comment)
+ HD5packFstring(c_comment, _fcdtocp(comment), c_commentsize - 1);
+ return ret_value;
+
+ done:
+ if(c_comment)
+ HDfree(c_comment);
+
+ return ret_value;
+}
+
+/****if* H5Of/h5oget_comment_by_name_c
+ * NAME
+ * h5oget_comment_by_name_c
+ * PURPOSE
+ * Calls H5Oget_comment_by_name
+ * INPUTS
+ * object_id - Identifier for the target object.
+ * bufsize - Anticipated required size of the comment buffer.
+ * OUTPUTS
+ * comment - The comment.
+ *
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * July 6, 2012
+ * SOURCE
+*/
+int_f
+nh5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size,
+ _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id)
+/******/
+{
+ char *c_comment = NULL; /* Buffer to hold C string */
+ char *c_name = NULL; /* Buffer to hold C string */
+ int_f ret_value = 0; /* Return value */
+ size_t c_commentsize;
+
+ /*
+ * Convert FORTRAN string to C string
+ */
+ if((c_name = HD5f2cstring(name, (size_t)*name_size)) == NULL)
+ HGOTO_DONE(FAIL);
+
+ c_commentsize = (size_t)*commentsize + 1;
+
+ /*
+ * Allocate buffer to hold comment name
+ */
+
+ if(NULL == (c_comment = (char *)HDmalloc(c_commentsize)))
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Call H5Oget_comment_by_name function.
+ */
+
+ if((*bufsize = (size_t_f)H5Oget_comment_by_name((hid_t)*loc_id, c_name, c_comment, (size_t)*commentsize,(hid_t)*lapl_id )) < 0)
+ HGOTO_DONE(FAIL);
+
+ /*
+ * Convert C name to FORTRAN and place it in the given buffer
+ */
+ if(c_comment)
+ HD5packFstring(c_comment, _fcdtocp(comment), c_commentsize - 1);
+ return ret_value;
+
+ done:
+ if(c_comment)
+ HDfree(c_comment);
+ if(c_name)
+ HDfree(c_name);
+
+ return ret_value;
+}
diff --git a/fortran/src/H5Off.f90 b/fortran/src/H5Off.f90
index 4f1ea18..ce8c55c 100644
--- a/fortran/src/H5Off.f90
+++ b/fortran/src/H5Off.f90
@@ -119,15 +119,15 @@ CONTAINS
! Opens an object in an HDF5 file by location identifier and path name.
!
! Inputs:
-! loc_id - File or group identifier.
-! name - Path to the object, relative to loc_id.
+! loc_id - File or group identifier.
+! name - Path to the object, relative to loc_id.
!
! Outputs:
-! obj_id - Object identifier for the opened object.
-! hdferr - Returns 0 if successful and -1 if fails.
+! obj_id - Object identifier for the opened object.
+! hdferr - Returns 0 if successful and -1 if fails.
!
! Optional parameters:
-! lapl_id - Access property list identifier for the link pointing to the object.
+! lapl_id - Access property list identifier for the link pointing to the object.
!
! AUTHOR
! M. Scot Breitenfeld
@@ -215,12 +215,12 @@ CONTAINS
! Opens an object using its address within an HDF5 file.
!
! Inputs:
-! loc_id - File or group identifier.
-! addr - Object’s address in the file.
+! loc_id - File or group identifier.
+! addr - Object’s address in the file.
!
! Outputs:
-! obj_id - Object identifier for the opened object.
-! hdferr - Returns 0 if successful and -1 if fails.
+! obj_id - Object identifier for the opened object.
+! hdferr - Returns 0 if successful and -1 if fails.
!
! AUTHOR
! M. Scot Breitenfeld
@@ -321,5 +321,455 @@ CONTAINS
END SUBROUTINE h5ocopy_f
+!****s* H5O/h5odecr_refcount_f
+! NAME
+! h5odecr_refcount_f
+!
+! PURPOSE
+! Decrements an object reference count.
+!
+! Inputs:
+! object_id - Object identifier.
+!
+! Outputs:
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 11, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5odecr_refcount_f(object_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: object_id
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+
+ INTERFACE
+ INTEGER FUNCTION h5odecr_refcount_c(object_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5ODECR_REFCOUNT_C'::h5odecr_refcount_c
+ !DEC$ENDIF
+ INTEGER(HID_T) , INTENT(IN) :: object_id
+ END FUNCTION h5odecr_refcount_c
+ END INTERFACE
+
+ hdferr = h5odecr_refcount_c(object_id)
+
+ END SUBROUTINE h5odecr_refcount_f
+
+!****s* H5O/h5oexists_by_name_f
+! NAME
+! h5oexists_by_name_f
+!
+! PURPOSE
+! Determines whether a link resolves to an actual object.
+!
+! Inputs:
+! loc_id - Identifier of the file or group to query.
+! name - The name of the link to check.
+!
+!
+! Optional parameters:
+! lapl_id - Link access property list identifier.
+!
+! Outputs:
+! link_exists - Existing link resolves to an object.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 11, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oexists_by_name_f(loc_id, name, link_exists, hdferr, lapl_id)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ LOGICAL , INTENT(OUT) :: link_exists
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HID_T) , INTENT(IN), OPTIONAL :: lapl_id
+!*****
+
+ INTEGER(size_t) :: namelen
+ INTEGER :: status
+ INTEGER(HID_T) :: lapl_id_default
+
+ INTERFACE
+ INTEGER FUNCTION h5oexists_by_name_c(loc_id, name, namelen, lapl_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OEXISTS_BY_NAME_C'::h5oexists_by_name_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: name
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER(SIZE_T) , INTENT(IN) :: namelen
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id
+
+ END FUNCTION h5oexists_by_name_c
+ END INTERFACE
+
+ namelen = LEN(name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ status = h5oexists_by_name_c(loc_id, name, namelen, lapl_id_default)
+
+ link_exists = .FALSE.
+ IF(status.EQ.1)THEN
+ link_exists = .TRUE.
+ ENDIF
+
+ hdferr = 0
+ IF(status.LT.0)THEN
+ hdferr = -1
+ ENDIF
+
+ END SUBROUTINE h5oexists_by_name_f
+
+!****s* H5O/h5oget_comment_f
+! NAME
+! h5oget_comment_f
+!
+! PURPOSE
+! Retrieves comment for specified object.
+!
+! Inputs:
+! obj_id - Identifier for the target object.
+!
+! Optional parameters:
+! bufsize - Size of the comment buffer.
+!
+! Outputs:
+! comment - The comment.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 11, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oget_comment_f(obj_id, comment, hdferr, bufsize)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: obj_id
+ CHARACTER(LEN=*) , INTENT(OUT) :: comment
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HSSIZE_T), INTENT(OUT), OPTIONAL :: bufsize
+!*****
+
+ INTEGER(SIZE_T) :: commentsize_default
+ INTEGER(HSSIZE_T) :: bufsize_default
+
+ INTERFACE
+ INTEGER FUNCTION h5oget_comment_c(obj_id, comment, commentsize_default, bufsize)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OGET_COMMENT_C'::h5oget_comment_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: comment
+ INTEGER(HID_T) , INTENT(IN) :: obj_id
+ CHARACTER(LEN=*), INTENT(OUT) :: comment
+ INTEGER(SIZE_T) , INTENT(IN) :: commentsize_default
+ INTEGER(HSSIZE_T) , INTENT(OUT) :: bufsize
+ END FUNCTION h5oget_comment_c
+ END INTERFACE
+
+ commentsize_default = LEN(comment)
+
+ hdferr = h5oget_comment_c(obj_id, comment, commentsize_default, bufsize_default)
+
+ IF(PRESENT(bufsize)) bufsize = bufsize_default
+
+ END SUBROUTINE h5oget_comment_f
+
+!****s* H5O/h5oget_comment_by_name_f
+! NAME
+! h5oget_comment_by_name_f
+!
+! PURPOSE
+! Retrieves comment for specified object.
+!
+! Inputs:
+! loc_id - Identifier of a file, group, dataset, or named datatype.
+! name - Name of the object whose comment is to be retrieved,
+! specified as a path relative to loc_id.
+!
+! Optional parameters:
+! bufsize - Size of the comment buffer.
+!
+! Outputs:
+! comment - The comment.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! July 6, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oget_comment_by_name_f(loc_id, name, comment, hdferr, bufsize, lapl_id)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ CHARACTER(LEN=*), INTENT(OUT) :: comment
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(SIZE_T) , INTENT(OUT), OPTIONAL :: bufsize
+ INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+!*****
+
+ INTEGER(SIZE_T) :: commentsize_default
+ INTEGER(SIZE_T) :: name_size
+ INTEGER(SIZE_T) :: bufsize_default
+ INTEGER(HID_T) :: lapl_id_default
+ INTERFACE
+ INTEGER FUNCTION h5oget_comment_by_name_c(loc_id, name, name_size, &
+ comment, commentsize_default, bufsize_default, lapl_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OGET_COMMENT_BY_NAME_C'::h5oget_comment_by_name_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: comment, name
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER(SIZE_T) , INTENT(IN) :: name_size
+ CHARACTER(LEN=*), INTENT(OUT) :: comment
+ INTEGER(SIZE_T) , INTENT(IN) :: commentsize_default
+ INTEGER(SIZE_T) , INTENT(OUT) :: bufsize_default
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id
+ END FUNCTION h5oget_comment_by_name_c
+ END INTERFACE
+
+ commentsize_default = LEN(comment)
+ name_size = LEN(name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ hdferr = h5oget_comment_by_name_c(loc_id, name, name_size, &
+ comment, commentsize_default, bufsize_default, lapl_id_default)
+
+ IF(PRESENT(bufsize)) bufsize = bufsize_default
+
+ END SUBROUTINE h5oget_comment_by_name_f
+
+!****s* H5O/h5oincr_refcount_f
+! NAME
+! h5oincr_refcount_f
+!
+! PURPOSE
+! Increments an object reference count.
+!
+! Inputs:
+! obj_id - Object identifier.
+!
+! Outputs:
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 15, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oincr_refcount_f(obj_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: obj_id
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+
+ INTERFACE
+ INTEGER FUNCTION h5oincr_refcount_c(obj_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OINCR_REFCOUNT_C'::h5oincr_refcount_c
+ !DEC$ENDIF
+ INTEGER(HID_T) , INTENT(IN) :: obj_id
+ END FUNCTION h5oincr_refcount_c
+ END INTERFACE
+
+ hdferr = h5oincr_refcount_c(obj_id)
+
+ END SUBROUTINE h5oincr_refcount_f
+
+!****s* H5O/h5oopen_by_idx_f
+!
+! NAME
+! h5oopen_by_idx_f
+!
+! PURPOSE
+! Open the nth object in a group.
+!
+! Inputs:
+! loc_id - A file or group identifier.
+! group_name - Name of group, relative to loc_id, in which object is located.
+! index_type - Type of index by which objects are ordered.
+! order - Order of iteration within index, NOTE: zero-based.
+! n - Object to open.
+!
+! Outputs:
+! obj_id - An object identifier for the opened object.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! Optional parameters:
+! lapl_id - Link access property list.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 17, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oopen_by_idx_f(loc_id, group_name, index_type, order, n, obj_id, &
+ hdferr, lapl_id)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: group_name
+ INTEGER , INTENT(IN) :: index_type
+ INTEGER , INTENT(IN) :: order
+ INTEGER(HSIZE_T), INTENT(IN) :: n
+ INTEGER(HID_T) , INTENT(OUT) :: obj_id
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+!*****
+ INTEGER(SIZE_T) :: group_namelen
+ INTEGER(HID_T) :: lapl_id_default
+
+ INTERFACE
+ INTEGER FUNCTION h5oopen_by_idx_c(loc_id, group_name, group_namelen, index_type, order, n, obj_id, lapl_id_default)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OOPEN_BY_IDX_C'::h5oopen_by_idx_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: group_name
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: group_name
+ INTEGER(SIZE_T) , INTENT(IN) :: group_namelen
+ INTEGER , INTENT(IN) :: index_type
+ INTEGER , INTENT(IN) :: order
+ INTEGER(HSIZE_T), INTENT(IN) :: n
+ INTEGER(HID_T) , INTENT(OUT) :: obj_id
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id_default
+
+ END FUNCTION h5oopen_by_idx_c
+ END INTERFACE
+
+ group_namelen = LEN(group_name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ hdferr = h5oopen_by_idx_c(loc_id, group_name, group_namelen, index_type, order, n, obj_id, lapl_id_default)
+
+ END SUBROUTINE H5Oopen_by_idx_f
+
+!****s* H5O/h5oset_comment_f
+! NAME
+! h5oset_comment_f
+!
+! PURPOSE
+! Sets comment for specified object.
+!
+! Inputs:
+! obj_id - Identifier of the target object.
+! comment - The new comment.
+!
+! Outputs:
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 15, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oset_comment_f(obj_id, comment, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: obj_id
+ CHARACTER(LEN=*), INTENT(IN) :: comment
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ INTEGER(SIZE_T) :: commentlen
+
+ INTERFACE
+ INTEGER FUNCTION h5oset_comment_c(obj_id, comment, commentlen)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OSET_COMMENT_C'::h5oset_comment_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: comment
+ INTEGER(HID_T) , INTENT(IN) :: obj_id
+ CHARACTER(LEN=*), INTENT(IN) :: comment
+ INTEGER(SIZE_T) , INTENT(IN) :: commentlen
+
+ END FUNCTION h5oset_comment_c
+ END INTERFACE
+
+ commentlen = LEN(comment)
+
+ hdferr = h5oset_comment_c(obj_id, comment, commentlen)
+
+ END SUBROUTINE h5oset_comment_f
+
+!****s* H5O/h5oset_comment_by_name_f
+! NAME
+! h5oset_comment_by_name_f
+!
+! PURPOSE
+! Sets comment for specified object.
+!
+! Inputs:
+! loc_id - Identifier of a file, group, dataset, or named datatype.
+! name - Name of the object whose comment is to be set or reset,
+! specified as a path relative to loc_id.
+! comment - The new comment.
+!
+! Outputs:
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! Optional parameters:
+! lapl_id - Link access property list identifier.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 15, 2012
+!
+! Fortran90 Interface:
+ SUBROUTINE h5oset_comment_by_name_f(loc_id, name, comment, hdferr, lapl_id)
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ CHARACTER(LEN=*), INTENT(IN) :: comment
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HID_T) , INTENT(IN), OPTIONAL :: lapl_id
+!*****
+ INTEGER(SIZE_T) :: commentlen
+ INTEGER(SIZE_T) :: namelen
+ INTEGER(HID_T) :: lapl_id_default
+
+ INTERFACE
+ INTEGER FUNCTION h5oset_comment_by_name_c(loc_id, name, namelen, comment, commentlen, lapl_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OSET_COMMENT_BY_NAME_C'::h5oset_comment_by_name_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: name, comment
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: comment
+ INTEGER(SIZE_T) , INTENT(IN) :: commentlen
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER(SIZE_T) , INTENT(IN) :: namelen
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id
+ END FUNCTION h5oset_comment_by_name_c
+ END INTERFACE
+
+ commentlen = LEN(comment)
+ namelen = LEN(name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ hdferr = h5oset_comment_by_name_c(loc_id, name, namelen, comment, commentlen, lapl_id_default)
+
+ END SUBROUTINE h5oset_comment_by_name_f
+
END MODULE H5O
diff --git a/fortran/src/H5Off_F03.f90 b/fortran/src/H5Off_F03.f90
index 8eb7a4b..f4ddd3e 100644
--- a/fortran/src/H5Off_F03.f90
+++ b/fortran/src/H5Off_F03.f90
@@ -82,9 +82,9 @@ MODULE H5O_PROVISIONAL
ENDTYPE meta_size_t
TYPE, BIND(C) :: h5o_info_t
- INTEGER(c_long) :: fileno ! File number that object is located in
+ INTEGER(C_LONG) :: fileno ! File number that object is located in
INTEGER(haddr_t) :: addr ! Object address in file
- INTEGER :: type ! Basic object type (group, dataset, etc.)
+ INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.)
INTEGER :: rc ! Reference count of object
INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE --
@@ -181,14 +181,14 @@ CONTAINS
! Inputs:
! loc_id - File or group identifier specifying location of group
! in which object is located.
-! name - Name of group, relative to loc_id
+! name - Name of group, relative to loc_id.
!
! Outputs:
-! object_info - Buffer in which to return object information
-! hdferr - Returns 0 if successful and -1 if fails
+! object_info - Buffer in which to return object information.
+! hdferr - Returns 0 if successful and -1 if fails.
!
! Optional parameters:
-! lapl_id - Link access property list
+! lapl_id - Link access property list.
!
! AUTHOR
! M. Scot Breitenfeld
@@ -218,11 +218,12 @@ CONTAINS
!DEC$IF DEFINED(HDF5F90_WINDOWS)
!DEC$ATTRIBUTES C,reference,decorate,alias:'H5OGET_INFO_BY_NAME_C'::h5oget_info_by_name_c
!DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: name
INTEGER(HID_T) , INTENT(IN) :: loc_id
CHARACTER(LEN=*), INTENT(IN) :: name
INTEGER(SIZE_T) , INTENT(IN) :: namelen
INTEGER(HID_T) , INTENT(IN) :: lapl_id_default
- TYPE(C_PTR),value :: object_info
+ TYPE(C_PTR),VALUE :: object_info
END FUNCTION h5oget_info_by_name_c
END INTERFACE
@@ -238,5 +239,222 @@ CONTAINS
END SUBROUTINE H5Oget_info_by_name_f
+!****s* H5O (F03)/h5oget_info_f_F03
+!
+! NAME
+! h5oget_info_f
+!
+! PURPOSE
+! Retrieves the metadata for an object specified by an identifier.
+!
+! Inputs:
+! object_id - Identifier for target object.
+!
+! Outputs:
+! object_info - Buffer in which to return object information.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 11, 2012
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5oget_info_f(object_id, object_info, hdferr)
+
+ USE, INTRINSIC :: ISO_C_BINDING
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: object_id
+ TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info
+ INTEGER , INTENT(OUT) :: hdferr
+!*****
+ TYPE(C_PTR) :: ptr
+
+ INTERFACE
+ INTEGER FUNCTION h5oget_info_c(object_id, object_info)
+ USE H5GLOBAL
+ USE, INTRINSIC :: ISO_C_BINDING
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OGET_INFO_C'::h5oget_info_c
+ !DEC$ENDIF
+ INTEGER(HID_T), INTENT(IN) :: object_id
+ TYPE(C_PTR), VALUE :: object_info
+
+ END FUNCTION h5oget_info_c
+ END INTERFACE
+
+ ptr = C_LOC(object_info)
+ hdferr = H5Oget_info_c(object_id, ptr)
+
+ END SUBROUTINE H5Oget_info_f
+
+!****s* H5O (F03)/h5oget_info_by_idx_f_F03
+!
+! NAME
+! h5oget_info_by_idx_f
+!
+! PURPOSE
+! Retrieves the metadata for an object, identifying the object by an index position.
+!
+! Inputs:
+! loc_id - File or group identifier specifying location of group
+! in which object is located.
+! group_name - Name of group in which object is located.
+! index_field - Index or field that determines the order.
+! order - Order within field or index.
+! n - Object for which information is to be returned
+!
+! Outputs:
+! object_info - Buffer in which to return object information.
+! hdferr - Returns 0 if successful and -1 if fails.
+!
+! Optional parameters:
+! lapl_id - Link access property list. (Not currently used.)
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! May 11, 2012
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5oget_info_by_idx_f(loc_id, group_name, index_field, order, n, &
+ object_info, hdferr, lapl_id)
+
+ USE, INTRINSIC :: ISO_C_BINDING
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: group_name
+ INTEGER , INTENT(IN) :: index_field
+ INTEGER , INTENT(IN) :: order
+ INTEGER(HSIZE_T), INTENT(IN) :: n
+ TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+!*****
+ INTEGER :: corder_valid
+ INTEGER(SIZE_T) :: namelen
+ INTEGER(HID_T) :: lapl_id_default
+ TYPE(C_PTR) :: ptr
+
+ INTERFACE
+ INTEGER FUNCTION h5oget_info_by_idx_c(loc_id, group_name, namelen, &
+ index_field, order, n, lapl_id_default, object_info)
+ USE H5GLOBAL
+ USE, INTRINSIC :: ISO_C_BINDING
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OGET_INFO_BY_IDX_C'::h5oget_info_by_idx_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: group_name
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: group_name
+ INTEGER(SIZE_T) , INTENT(IN) :: namelen
+ INTEGER , INTENT(IN) :: index_field
+ INTEGER , INTENT(IN) :: order
+ INTEGER(HSIZE_T), INTENT(IN) :: n
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id_default
+ TYPE(C_PTR), VALUE :: object_info
+
+ END FUNCTION h5oget_info_by_idx_c
+ END INTERFACE
+
+ namelen = LEN(group_name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ ptr = C_LOC(object_info)
+ hdferr = H5Oget_info_by_idx_c(loc_id, group_name, namelen, index_field, order, n, lapl_id_default, ptr)
+
+ END SUBROUTINE H5Oget_info_by_idx_f
+
+
+!****s* H5O (F03)/h5ovisit_by_name_f_F03
+!
+! NAME
+! h5ovisit_by_name_f
+!
+! PURPOSE
+! Recursively visits all objects starting from a specified object.
+!
+! Inputs:
+! loc_id - Identifier of a file or group.
+! object_name - Name of the object, generally relative to loc_id, that will serve as root of the iteration
+! index_type - Type of index; valid values include:
+! H5_INDEX_NAME_F
+! H5_INDEX_CRT_ORDER_F
+! order - Order in which index is traversed; valid values include:
+! H5_ITER_DEC_F
+! H5_ITER_INC_F
+! H5_ITER_NATIVE_F
+! op - Callback function passing data regarding the group to the calling application
+! op_data - User-defined pointer to data required by the application for its processing of the group
+!
+! Outputs:
+! return_value - Returns the return value of the first operator that returns a positive value, or
+! zero if all members were processed with no operator returning non-zero.
+! hdferr - Returns 0 if successful and -1 if fails
+!
+! Optional parameters:
+! lapl_id - Link access property list identifier.
+!
+! AUTHOR
+! M. Scot Breitenfeld
+! November 19, 2008
+!
+! Fortran2003 Interface:
+ SUBROUTINE h5ovisit_by_name_f(loc_id, object_name, index_type, order, op, op_data, &
+ return_value, hdferr, lapl_id)
+ USE, INTRINSIC :: ISO_C_BINDING
+ IMPLICIT NONE
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: object_name
+ INTEGER , INTENT(IN) :: index_type
+ INTEGER , INTENT(IN) :: order
+
+ TYPE(C_FUNPTR) :: op
+ TYPE(C_PTR) :: op_data
+ INTEGER , INTENT(OUT) :: return_value
+ INTEGER , INTENT(OUT) :: hdferr
+ INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id
+!*****
+
+ INTEGER(SIZE_T) :: namelen
+ INTEGER(HID_T) :: lapl_id_default
+ TYPE(C_PTR) :: ptr
+
+ INTERFACE
+ INTEGER FUNCTION h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, &
+ op, op_data, lapl_id)
+ USE, INTRINSIC :: ISO_C_BINDING
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5OVISIT_BY_NAME_C'::h5ovisit_by_name_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: object_name
+ INTEGER(HID_T) , INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: object_name
+ INTEGER(SIZE_T) :: namelen
+ INTEGER , INTENT(IN) :: index_type
+ INTEGER , INTENT(IN) :: order
+ TYPE(C_FUNPTR) , VALUE :: op
+ TYPE(C_PTR) , VALUE :: op_data
+ INTEGER(HID_T) , INTENT(IN) :: lapl_id
+ END FUNCTION h5ovisit_by_name_c
+ END INTERFACE
+
+ namelen = LEN(object_name)
+
+ lapl_id_default = H5P_DEFAULT_F
+ IF(PRESENT(lapl_id)) lapl_id_default = lapl_id
+
+ return_value = h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, &
+ op, op_data, lapl_id_default)
+
+ IF(return_value.GE.0)THEN
+ hdferr = 0
+ ELSE
+ hdferr = -1
+ END IF
+
+ END SUBROUTINE h5ovisit_by_name_f
+
END MODULE H5O_PROVISIONAL
diff --git a/fortran/src/H5Pff.f90 b/fortran/src/H5Pff.f90
index d50e3b9..4254b7f 100644
--- a/fortran/src/H5Pff.f90
+++ b/fortran/src/H5Pff.f90
@@ -6419,3 +6419,5 @@ SUBROUTINE h5pset_attr_phase_change_f(ocpl_id, max_compact, min_dense, hdferr)
END MODULE H5P
+
+
diff --git a/fortran/src/H5Rf.c b/fortran/src/H5Rf.c
index 86e0e61..0799e11 100644
--- a/fortran/src/H5Rf.c
+++ b/fortran/src/H5Rf.c
@@ -331,6 +331,47 @@ done:
return ret_value;
} /* end nh5rget_region_region_c() */
+/****if* H5Rf/h5rget_region_ptr_c
+ * NAME
+ * h5rget_region_ptr_c
+ * PURPOSE
+ * Call H5Rget_region to dereference dataspace region
+ * INPUTS
+ * dset_id - dataset identifier
+ * ref - reference to the dataset region
+ * OUTPUTS
+ * space_id - dereferenced dataset dataspace identifier
+ * RETURNS
+ * 0 on success, -1 on failure
+ * AUTHOR
+ * M. Scot Breitenfeld
+ * August 4, 2012
+ * HISTORY
+ *
+ * SOURCE
+*/
+int_f
+nh5rget_region_ptr_c(hid_t_f *dset_id, void *ref, hid_t_f *space_id)
+/******/
+{
+ hid_t c_space_id;
+ hdset_reg_ref_t ref_c;
+ int_f ret_value = 0;
+
+ /*
+ * Call H5Rget_region function.
+ */
+ if((c_space_id = H5Rget_region((hid_t)*dset_id, H5R_DATASET_REGION, ref)) < 0)
+ HGOTO_DONE(FAIL)
+
+ /* Copy the dataspace ID */
+ *space_id = (hid_t_f)c_space_id;
+
+done:
+ return ret_value;
+} /* end nh5rget_region_ptr_c() */
+
+
/****if* H5Rf/h5rget_object_type_obj_c
* NAME
* h5rget_object_type_obj_c
diff --git a/fortran/src/H5Rff.f90 b/fortran/src/H5Rff.f90
index 35a3ed6..89ffc10 100644
--- a/fortran/src/H5Rff.f90
+++ b/fortran/src/H5Rff.f90
@@ -53,12 +53,6 @@ MODULE H5R
! END TYPE
!
- INTERFACE h5rget_region_f
-
- MODULE PROCEDURE h5rget_region_region_f
-
- END INTERFACE
-
INTERFACE h5rget_object_type_f
MODULE PROCEDURE h5rget_object_type_obj_f
@@ -67,61 +61,6 @@ MODULE H5R
CONTAINS
-!****s* H5R/h5rget_region_region_f
-!
-! NAME
-! h5rget_region_region_f
-!
-! PURPOSE
-! Retrieves a dataspace with the specified region selected
-!
-! INPUTS
-! dset_id - identifier of the dataset containing
-! reference to the regions
-! ref - reference to open
-! OUTPUTS
-! space_id - dataspace identifier
-! hdferr - Returns 0 if successful and -1 if fails
-! AUTHOR
-! Elena Pourmal
-! August 12, 1999
-!
-! HISTORY
-! Explicit Fortran interfaces were added for
-! called C functions (it is needed for Windows
-! port). February 28, 2001
-!
-! NOTES
-! This is a module procedure for the h5rget_region_f subroutine.
-!
-! SOURCE
- SUBROUTINE h5rget_region_region_f(dset_id, ref, space_id, hdferr)
- IMPLICIT NONE
- INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
- TYPE(hdset_reg_ref_t_f), INTENT(IN) :: ref ! Dataset region reference
- INTEGER(HID_T), INTENT(OUT) :: space_id ! Space identifier
- INTEGER, INTENT(OUT) :: hdferr ! Error code
-!*****
- INTEGER :: ref_f(REF_REG_BUF_LEN) ! Local buffer to pass reference
-
- INTERFACE
- INTEGER FUNCTION h5rget_region_region_c(dset_id, ref_f, space_id)
- USE H5GLOBAL
- !DEC$IF DEFINED(HDF5F90_WINDOWS)
- !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RGET_REGION_REGION_C':: h5rget_region_region_c
- !DEC$ENDIF
- INTEGER(HID_T), INTENT(IN) :: dset_id
- ! INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
- INTEGER :: ref_f(REF_REG_BUF_LEN)
- INTEGER(HID_T), INTENT(OUT) :: space_id
- END FUNCTION h5rget_region_region_c
- END INTERFACE
-
- ref_f = ref%ref
- hdferr = h5rget_region_region_c(dset_id, ref_f, space_id )
-
- END SUBROUTINE h5rget_region_region_f
-
!****s* H5R/h5rget_object_type_obj_f
!
! NAME
diff --git a/fortran/src/H5Rff_F03.f90 b/fortran/src/H5Rff_F03.f90
index 7f66745..88ec8cf 100644
--- a/fortran/src/H5Rff_F03.f90
+++ b/fortran/src/H5Rff_F03.f90
@@ -37,6 +37,7 @@
!*****
MODULE H5R_PROVISIONAL
USE H5GLOBAL
+ USE, INTRINSIC :: ISO_C_BINDING
! If you change the value of these parameters, do not forget to change corresponding
! values in the H5f90.h file.
@@ -51,6 +52,19 @@ MODULE H5R_PROVISIONAL
! INTEGER ref(REF_REG_BUF_LEN)
! END TYPE
!
+
+ TYPE :: hdset_reg_ref_t_f03
+ INTEGER(C_SIGNED_CHAR), DIMENSION(1:H5R_DSET_REG_REF_BUF_SIZE_F) :: ref
+ END TYPE hdset_reg_ref_t_f03
+
+ INTERFACE h5rget_region_f
+
+ MODULE PROCEDURE h5rget_region_region_f ! obsolete
+ MODULE PROCEDURE h5rget_region_ptr_f ! F2003
+
+ END INTERFACE
+
+
INTERFACE h5rcreate_f
MODULE PROCEDURE h5rcreate_object_f ! obsolete
@@ -123,8 +137,114 @@ MODULE H5R_PROVISIONAL
END FUNCTION h5rcreate_ptr_c
END INTERFACE
+ INTERFACE
+ INTEGER FUNCTION h5rget_region_ptr_c(dset_id, ref, space_id)
+ USE, INTRINSIC :: ISO_C_BINDING
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RGET_REGION_PTR_C':: h5rget_region_ptr_c
+ !DEC$ENDIF
+ INTEGER(HID_T), INTENT(IN) :: dset_id
+ TYPE(C_PTR), VALUE :: ref
+ INTEGER(HID_T), INTENT(OUT) :: space_id
+ END FUNCTION h5rget_region_ptr_c
+ END INTERFACE
+
CONTAINS
+!****s* H5R/h5rget_region_region_f
+!
+! NAME
+! h5rget_region_region_f
+!
+! PURPOSE
+! Retrieves a dataspace with the specified region selected
+!
+! INPUTS
+! dset_id - identifier of the dataset containing
+! reference to the regions
+! ref - reference to open
+! OUTPUTS
+! space_id - dataspace identifier
+! hdferr - Returns 0 if successful and -1 if fails
+! AUTHOR
+! Elena Pourmal
+! August 12, 1999
+!
+! HISTORY
+! Explicit Fortran interfaces were added for
+! called C functions (it is needed for Windows
+! port). February 28, 2001
+!
+! NOTES
+! This is a module procedure for the h5rget_region_f subroutine.
+!
+! SOURCE
+ SUBROUTINE h5rget_region_region_f(dset_id, ref, space_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
+ TYPE(hdset_reg_ref_t_f), INTENT(IN) :: ref ! Dataset region reference
+ INTEGER(HID_T), INTENT(OUT) :: space_id ! Space identifier
+ INTEGER, INTENT(OUT) :: hdferr ! Error code
+!*****
+ INTEGER :: ref_f(REF_REG_BUF_LEN) ! Local buffer to pass reference
+
+ INTERFACE
+ INTEGER FUNCTION h5rget_region_region_c(dset_id, ref_f, space_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RGET_REGION_REGION_C':: h5rget_region_region_c
+ !DEC$ENDIF
+ INTEGER(HID_T), INTENT(IN) :: dset_id
+ ! INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
+ INTEGER :: ref_f(REF_REG_BUF_LEN)
+ INTEGER(HID_T), INTENT(OUT) :: space_id
+ END FUNCTION h5rget_region_region_c
+ END INTERFACE
+
+ ref_f = ref%ref
+ hdferr = h5rget_region_region_c(dset_id, ref_f, space_id )
+
+ END SUBROUTINE h5rget_region_region_f
+
+!****s* H5R/h5rget_region_ptr_f
+!
+! NAME
+! h5rget_region_ptr_f
+!
+! PURPOSE
+! Retrieves a dataspace with the specified region
+! selected using pointer
+!
+! INPUTS
+! dset_id - identifier of the dataset containing
+! reference to the regions
+! ref - reference to open
+! OUTPUTS
+! space_id - dataspace identifier
+! hdferr - Returns 0 if successful and -1 if fails
+! AUTHOR
+! M. Scot Breitenfeld
+! August 4, 2012
+!
+! NOTES
+! This is a module procedure for the h5rget_region_f subroutine.
+!
+! SOURCE
+ SUBROUTINE h5rget_region_ptr_f(dset_id, ref, space_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
+ TYPE(C_PTR), INTENT(IN) :: ref ! Dataset region reference
+ INTEGER(HID_T), INTENT(OUT) :: space_id ! Space identifier
+ INTEGER, INTENT(OUT) :: hdferr ! Error code
+!*****
+ INTEGER :: ref_f(REF_REG_BUF_LEN) ! Local buffer to pass reference
+
+ hdferr = h5rget_region_ptr_c(dset_id, ref, space_id )
+
+ END SUBROUTINE h5rget_region_ptr_f
+
+
!****s* H5R (F03)/h5rcreate_object_f
!
! NAME
@@ -175,7 +295,7 @@ CONTAINS
END SUBROUTINE h5rcreate_object_f
-!****s* H5R (F03)/h5rcreate_region_f
+!****s* H5R (F90)/h5rcreate_region_f
!
! NAME
! h5rcreate_region_f
@@ -183,16 +303,15 @@ CONTAINS
! PURPOSE
! Creates reference to the dataset region
!
-! Inputs:
+! INPUTS
! loc_id - location identifier
! name - name of the dataset at the specified location
! space_id - dataspace identifier that describes selected region
-! Outputs:
+! OUTPUTS
! ref - reference to the dataset region
! hdferr: - error code
! Success: 0
! Failure: -1
-!
! AUTHOR
! Elena Pourmal
! August 12, 1999
@@ -205,46 +324,39 @@ CONTAINS
! NOTES
! This is a module procedure for the h5rcreate_f subroutine.
!
-! Signature:
+! SOURCE
SUBROUTINE h5rcreate_region_f(loc_id, name, space_id, ref, hdferr)
- USE, INTRINSIC :: ISO_C_BINDING
IMPLICIT NONE
INTEGER(HID_T), INTENT(IN) :: loc_id ! Location identifier
CHARACTER(LEN=*), INTENT(IN) :: name ! Name of the dataset at location specified
! by loc_id identifier
INTEGER(HID_T), INTENT(IN) :: space_id ! Dataset's dataspace identifier
- TYPE(hdset_reg_ref_t_f), INTENT(INOUT), TARGET :: ref ! Dataset region reference
+ TYPE(hdset_reg_ref_t_f), INTENT(OUT) :: ref ! Dataset region reference
INTEGER, INTENT(OUT) :: hdferr ! Error code
!*****
INTEGER :: namelen ! Name length
INTEGER :: ref_f(REF_REG_BUF_LEN) ! Local buffer to pass reference
- TYPE(C_PTR) :: f_ptr
-
-! !$ INTERFACE
-! !$ INTEGER FUNCTION h5rcreate_region_c(ref_f, loc_id, name, namelen, space_id)
-! !$ USE H5GLOBAL
-! !$ !DEC$IF DEFINED(HDF5F90_WINDOWS)
-! !$ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RCREATE_REGION_C':: h5rcreate_region_c
-! !$ !DEC$ENDIF
-! !$ !DEC$ATTRIBUTES reference :: name
-! !$ ! INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
-! !$ INTEGER :: ref_f(REF_REG_BUF_LEN)
-! !$ INTEGER(HID_T), INTENT(IN) :: loc_id
-! !$ CHARACTER(LEN=*), INTENT(IN) :: name
-! !$ INTEGER :: namelen
-! !$ INTEGER(HID_T), INTENT(IN) :: space_id
-! !$ END FUNCTION h5rcreate_region_c
-! !$ END INTERFACE
-
- f_ptr = C_LOC(ref)
+ INTERFACE
+ INTEGER FUNCTION h5rcreate_region_c(ref_f, loc_id, name, namelen, space_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RCREATE_REGION_C':: h5rcreate_region_c
+ !DEC$ENDIF
+ !DEC$ATTRIBUTES reference :: name
+ ! INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
+ INTEGER :: ref_f(REF_REG_BUF_LEN)
+ INTEGER(HID_T), INTENT(IN) :: loc_id
+ CHARACTER(LEN=*), INTENT(IN) :: name
+ INTEGER :: namelen
+ INTEGER(HID_T), INTENT(IN) :: space_id
+ END FUNCTION h5rcreate_region_c
+ END INTERFACE
namelen = LEN(name)
- hdferr = h5rcreate_ptr_c(f_ptr, loc_id, name, namelen, 1, space_id)
-
-! !$ ref_f = 0
-! !$ hdferr = h5rcreate_region_c(ref_f, loc_id, name, namelen, space_id )
-! !$ ref%ref = ref_f
+ ref_f = 0
+ hdferr = h5rcreate_region_c(ref_f, loc_id, name, namelen, space_id )
+ ref%ref = ref_f
END SUBROUTINE h5rcreate_region_f
diff --git a/fortran/src/H5Rff_F90.f90 b/fortran/src/H5Rff_F90.f90
index 3f02825..0190e57 100644
--- a/fortran/src/H5Rff_F90.f90
+++ b/fortran/src/H5Rff_F90.f90
@@ -72,8 +72,73 @@ MODULE H5R_PROVISIONAL
END INTERFACE
+ INTERFACE h5rget_region_f
+
+ MODULE PROCEDURE h5rget_region_region_f
+
+ END INTERFACE
+
+
CONTAINS
+
+!****s* H5R/h5rget_region_region_f
+!
+! NAME
+! h5rget_region_region_f
+!
+! PURPOSE
+! Retrieves a dataspace with the specified region selected
+!
+! INPUTS
+! dset_id - identifier of the dataset containing
+! reference to the regions
+! ref - reference to open
+! OUTPUTS
+! space_id - dataspace identifier
+! hdferr - Returns 0 if successful and -1 if fails
+! AUTHOR
+! Elena Pourmal
+! August 12, 1999
+!
+! HISTORY
+! Explicit Fortran interfaces were added for
+! called C functions (it is needed for Windows
+! port). February 28, 2001
+!
+! NOTES
+! This is a module procedure for the h5rget_region_f subroutine.
+!
+! SOURCE
+ SUBROUTINE h5rget_region_region_f(dset_id, ref, space_id, hdferr)
+ IMPLICIT NONE
+ INTEGER(HID_T), INTENT(IN) :: dset_id ! Dataset identifier
+ TYPE(hdset_reg_ref_t_f), INTENT(IN) :: ref ! Dataset region reference
+ INTEGER(HID_T), INTENT(OUT) :: space_id ! Space identifier
+ INTEGER, INTENT(OUT) :: hdferr ! Error code
+!*****
+ INTEGER :: ref_f(REF_REG_BUF_LEN) ! Local buffer to pass reference
+
+ INTERFACE
+ INTEGER FUNCTION h5rget_region_region_c(dset_id, ref_f, space_id)
+ USE H5GLOBAL
+ !DEC$IF DEFINED(HDF5F90_WINDOWS)
+ !DEC$ATTRIBUTES C,reference,decorate,alias:'H5RGET_REGION_REGION_C':: h5rget_region_region_c
+ !DEC$ENDIF
+ INTEGER(HID_T), INTENT(IN) :: dset_id
+ ! INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
+ INTEGER :: ref_f(REF_REG_BUF_LEN)
+ INTEGER(HID_T), INTENT(OUT) :: space_id
+ END FUNCTION h5rget_region_region_c
+ END INTERFACE
+
+ ref_f = ref%ref
+ hdferr = h5rget_region_region_c(dset_id, ref_f, space_id )
+
+ END SUBROUTINE h5rget_region_region_f
+
+
+
!****s* H5R (F90)/h5rcreate_object_f
!
! NAME
diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c
index 7b55384..4c85df2 100644
--- a/fortran/src/H5_f.c
+++ b/fortran/src/H5_f.c
@@ -398,7 +398,11 @@ nh5init_flags_c( int_f *h5d_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int
h5d_flags[19] = (int_f)H5D_CHUNK_CACHE_NSLOTS_DEFAULT;
h5d_flags[20] = (int_f)H5D_CHUNK_CACHE_NBYTES_DEFAULT;
h5d_flags[21] = (int_f)H5D_CHUNK_CACHE_W0_DEFAULT;
-
+ h5d_flags[22] = (int_f)H5D_MPIO_NO_COLLECTIVE;
+ h5d_flags[23] = (int_f)H5D_MPIO_CHUNK_INDEPENDENT;
+ h5d_flags[24] = (int_f)H5D_MPIO_CHUNK_COLLECTIVE;
+ h5d_flags[25] = (int_f)H5D_MPIO_CHUNK_MIXED;
+ h5d_flags[26] = (int_f)H5D_MPIO_CONTIGUOUS_COLLECTIVE;
/*
* H5E flags
*/
diff --git a/fortran/src/H5f90global.f90 b/fortran/src/H5f90global.f90
index 3d4f7f8..a6168d52 100644
--- a/fortran/src/H5f90global.f90
+++ b/fortran/src/H5f90global.f90
@@ -354,7 +354,7 @@ MODULE H5GLOBAL
! H5D flags declaration
!
- INTEGER, PARAMETER :: H5D_FLAGS_LEN = 22
+ INTEGER, PARAMETER :: H5D_FLAGS_LEN = 27
INTEGER H5D_flags(H5D_FLAGS_LEN)
!DEC$if defined(BUILD_HDF5_DLL)
!DEC$ATTRIBUTES DLLEXPORT :: /H5D_FLAGS/
@@ -387,10 +387,17 @@ MODULE H5GLOBAL
! shortened "_DEFAULT" to "_DFLT" to satisfy the limit of 31
! characters for variable names in Fortran.
+! shortened "_CONTIGUOUS" to "_CONTIG" to satisfy the limit of 31
+! characters for variable names in Fortran.
INTEGER :: H5D_CHUNK_CACHE_NSLOTS_DFLT_F
INTEGER :: H5D_CHUNK_CACHE_NBYTES_DFLT_F
INTEGER :: H5D_CHUNK_CACHE_W0_DFLT_F
+ INTEGER :: H5D_MPIO_NO_COLLECTIVE_F
+ INTEGER :: H5D_MPIO_CHUNK_INDEPENDENT_F
+ INTEGER :: H5D_MPIO_CHUNK_COLLECTIVE_F
+ INTEGER :: H5D_MPIO_CHUNK_MIXED_F
+ INTEGER :: H5D_MPIO_CONTIG_COLLECTIVE_F
EQUIVALENCE(H5D_flags(1), H5D_COMPACT_F)
EQUIVALENCE(H5D_flags(2), H5D_CONTIGUOUS_F)
@@ -419,6 +426,11 @@ MODULE H5GLOBAL
EQUIVALENCE(H5D_flags(20), H5D_CHUNK_CACHE_NSLOTS_DFLT_F)
EQUIVALENCE(H5D_flags(21), H5D_CHUNK_CACHE_NBYTES_DFLT_F)
EQUIVALENCE(H5D_flags(22), H5D_CHUNK_CACHE_W0_DFLT_F)
+ EQUIVALENCE(H5D_flags(23), H5D_MPIO_NO_COLLECTIVE_F)
+ EQUIVALENCE(H5D_flags(24), H5D_MPIO_CHUNK_INDEPENDENT_F)
+ EQUIVALENCE(H5D_flags(25), H5D_MPIO_CHUNK_COLLECTIVE_F)
+ EQUIVALENCE(H5D_flags(26), H5D_MPIO_CHUNK_MIXED_F)
+ EQUIVALENCE(H5D_flags(27), H5D_MPIO_CONTIG_COLLECTIVE_F)
!
! H5E flags declaration
diff --git a/fortran/src/H5f90kit.c b/fortran/src/H5f90kit.c
index 059685e..0bc721f 100644
--- a/fortran/src/H5f90kit.c
+++ b/fortran/src/H5f90kit.c
@@ -53,7 +53,7 @@ HD5f2cstring(_fcd fdesc, size_t len)
/* Search for the end of the string */
str = _fcdtocp(fdesc);
- for(i = (int)len - 1; i >= 0 && !HDisgraph((int)str[i]); i--)
+ for(i = (int)len - 1; i >= 0 && HDisspace((int)str[i]) && str[i] == ' '; i--)
/*EMPTY*/;
/* Allocate C string */
diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h
index d0a8361..9340c2a 100644
--- a/fortran/src/H5f90proto.h
+++ b/fortran/src/H5f90proto.h
@@ -61,7 +61,7 @@ typedef struct H5O_hdr_info_t_f {
typedef struct H5O_info_t_f {
unsigned long fileno; /* File number that object is located in */
haddr_t_f addr; /* Object address in file */
- int_f type; /* Basic object type (group, dataset, etc.) */
+ int type; /* Basic object type (group, dataset, etc.) */
int_f rc; /* Reference count of object */
int_f atime[8]; /* Access time */
int_f mtime[8]; /* Modification time */
@@ -806,11 +806,21 @@ H5_FCDLL int_f nh5tconvert_c(hid_t_f *src_id, hid_t_f *dst_id, size_t_f *nelmts,
#define nh5olink_c H5_FC_FUNC_(h5olink_c, H5OLINK_C)
#define nh5oopen_c H5_FC_FUNC_(h5oopen_c, H5OOPEN_C)
#define nh5oclose_c H5_FC_FUNC_(h5oclose_c, H5OCLOSE_C)
-#define nh5ovisit_c H5_FC_FUNC_(h5ovisit_c,H5OVISIT_C)
+#define nh5ovisit_c H5_FC_FUNC_(h5ovisit_c, H5OVISIT_C)
+#define nh5ovisit_by_name_c H5_FC_FUNC_(h5ovisit_by_name_c, H5OVISIT_BY_NAME_C)
+#define nh5oget_info_c H5_FC_FUNC_(h5oget_info_c, H5OGET_INFO_C)
+#define nh5oget_info_by_idx_c H5_FC_FUNC_(h5oget_info_by_idx_c ,H5OGET_INFO_BY_IDX_C)
#define nh5oget_info_by_name_c H5_FC_FUNC_(h5oget_info_by_name_c ,H5OGET_INFO_BY_NAME_C)
#define nh5oopen_by_addr_c H5_FC_FUNC_(h5oopen_by_addr_c, H5OOPEN_BY_ADDR_C)
#define nh5ocopy_c H5_FC_FUNC_(h5ocopy_c, H5OCOPY_C)
-
+#define nh5odecr_refcount_c H5_FC_FUNC_(h5odecr_refcount_c, H5ODECR_REFCOUNT_C)
+#define nh5oincr_refcount_c H5_FC_FUNC_(h5oincr_refcount_c, H5OINCR_REFCOUNT_C)
+#define nh5oexists_by_name_c H5_FC_FUNC_(h5oexists_by_name_c, H5OEXISTS_BY_NAME_C)
+#define nh5oset_comment_c H5_FC_FUNC_(h5oset_comment_c, H5OSET_COMMENT_C)
+#define nh5oset_comment_by_name_c H5_FC_FUNC_(h5oset_comment_by_name_c, H5OSET_COMMENT_BY_NAME_C)
+#define nh5oopen_by_idx_c H5_FC_FUNC_(h5oopen_by_idx_c, H5OOPEN_BY_IDX_C)
+#define nh5oget_comment_c H5_FC_FUNC_(h5oget_comment_c, H5OGET_COMMENT_C)
+#define nh5oget_comment_by_name_c H5_FC_FUNC_(h5oget_comment_by_name_c, H5OGET_COMMENT_BY_NAME_C)
H5_FCDLL int_f nh5oopen_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, hid_t_f *obj_id);
H5_FCDLL int_f nh5oclose_c (hid_t_f *object_id );
@@ -818,11 +828,26 @@ H5_FCDLL int_f nh5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *ob
H5_FCDLL int_f nh5olink_c (hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen,
hid_t_f *lcpl_id, hid_t_f *lapl_id);
H5_FCDLL int_f nh5ovisit_c (hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data);
-H5_FCDLL int_f nh5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen,hid_t_f *lapl_id,
+H5_FCDLL int_f nh5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order,
+ H5O_iterate_t op, void *op_data, hid_t_f *lapl_id );
+H5_FCDLL int_f nh5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info);
+H5_FCDLL int_f nh5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info);
+H5_FCDLL int_f nh5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id,
H5O_info_t_f *object_info);
H5_FCDLL int_f nh5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len,
hid_t_f *ocpypl_id, hid_t_f *lcpl_id );
+H5_FCDLL int_f nh5odecr_refcount_c (hid_t_f *object_id);
+H5_FCDLL int_f nh5oincr_refcount_c (hid_t_f *object_id);
+H5_FCDLL int_f nh5oexists_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oset_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentlen);
+H5_FCDLL int_f nh5oset_comment_by_name_c (hid_t_f *object_id, _fcd name, size_t_f *namelen, _fcd comment, size_t_f *commentlen, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oopen_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oget_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssize_t_f *bufsize);
+H5_FCDLL int_f nh5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size,
+ _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id);
/*
* Functions from H5Pf.c
*/
@@ -982,6 +1007,7 @@ H5_FCDLL int_f nh5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_nam
#define nh5pget_nlinks_c H5_FC_FUNC_(h5pget_nlinks_c, H5PGET_NLINKS_C)
#define nh5pset_chunk_cache_c H5_FC_FUNC_(h5pset_chunk_cache_c, H5PSET_CHUNK_CACHE_C)
#define nh5pget_chunk_cache_c H5_FC_FUNC_(h5pget_chunk_cache_c, H5PGET_CHUNK_CACHE_C)
+#define nh5pget_mpio_actual_io_mode_c H5_FC_FUNC_(h5pget_mpio_actual_io_mode_c, H5PGET_MPIO_ACTUAL_IO_MODE_C)
H5_FCDLL int_f nh5pcreate_c ( hid_t_f *cls, hid_t_f *prp_id );
H5_FCDLL int_f nh5pclose_c ( hid_t_f *prp_id );
@@ -1142,6 +1168,7 @@ H5_FCDLL int_f nh5pset_nlinks_c(hid_t_f *lapl_id, size_t_f *nlinks);
H5_FCDLL int_f nh5pget_nlinks_c(hid_t_f *lapl_id, size_t_f *nlinks);
H5_FCDLL int_f nh5pset_chunk_cache_c(hid_t_f *dapl_id, size_t_f *rdcc_nslots, size_t_f *rdcc_nbytes, real_f *rdcc_w0);
H5_FCDLL int_f nh5pget_chunk_cache_c(hid_t_f *dapl_id, size_t_f *rdcc_nslots, size_t_f *rdcc_nbytes, real_f *rdcc_w0);
+H5_FCDLL int_f nh5pget_mpio_actual_io_mode_c(hid_t_f *dxpl_id, int_f *actual_io_mode);
/*
* Functions frome H5Rf.c
*/
@@ -1152,6 +1179,7 @@ H5_FCDLL int_f nh5pget_chunk_cache_c(hid_t_f *dapl_id, size_t_f *rdcc_nslots, si
#define nh5rdereference_object_c H5_FC_FUNC_(h5rdereference_object_c, H5RDEREFERENCE_OBJECT_C)
#define nh5rdereference_ptr_c H5_FC_FUNC_(h5rdereference_ptr_c, H5RDEREFERENCE_PTR_C)
#define nh5rget_region_region_c H5_FC_FUNC_(h5rget_region_region_c, H5RGET_REGION_REGION_C)
+#define nh5rget_region_ptr_c H5_FC_FUNC_(h5rget_region_ptr_c, H5RGET_REGION_PTR_C)
#define nh5rget_object_type_obj_c H5_FC_FUNC_(h5rget_object_type_obj_c, H5RGET_OBJECT_TYPE_OBJ_C)
#define nh5rget_name_object_c H5_FC_FUNC_(h5rget_name_object_c, H5RGET_NAME_OBJECT_C)
#define nh5rget_name_region_c H5_FC_FUNC_(h5rget_name_region_c, H5RGET_NAME_REGION_C)
@@ -1166,6 +1194,7 @@ H5_FCDLL int_f nh5rdereference_region_c (hid_t_f *dset_id, int_f *ref, hid_t_f *
H5_FCDLL int_f nh5rdereference_object_c (hid_t_f *dset_id, haddr_t_f *ref, hid_t_f *obj_id);
H5_FCDLL int_f nh5rdereference_ptr_c (hid_t_f *obj_id, int_f *ref_type, void *ref, hid_t_f *ref_obj_id);
H5_FCDLL int_f nh5rget_region_region_c (hid_t_f *dset_id, int_f *ref, hid_t_f *space_id);
+H5_FCDLL int_f nh5rget_region_ptr_c(hid_t_f *dset_id, void *ref, hid_t_f *space_id);
H5_FCDLL int_f nh5rget_object_type_obj_c (hid_t_f *dset_id, haddr_t_f *ref, int_f *obj_type);
H5_FCDLL int_f nh5rget_name_object_c (hid_t_f *loc_id, haddr_t_f *ref, _fcd name, size_t_f *name_len, size_t_f *size_default);
H5_FCDLL int_f nh5rget_name_region_c (hid_t_f *loc_id, int_f *ref, _fcd name, size_t_f *name_len, size_t_f *size_default);
diff --git a/fortran/src/H5match_types.c b/fortran/src/H5match_types.c
index 61504ec..4c83d21 100644
--- a/fortran/src/H5match_types.c
+++ b/fortran/src/H5match_types.c
@@ -533,7 +533,21 @@ int main(void)
/* double_f */
#if defined H5_FORTRAN_HAS_DOUBLE_NATIVE_16_KIND
- writeFloatToFiles("Fortran_DOUBLE", "double_f", 16, H5_FORTRAN_HAS_DOUBLE_NATIVE_16_KIND);
+ if(H5_C_HAS_REAL_NATIVE_16 != 0) { /* Check if C has 16 byte floats */
+ writeFloatToFiles("Fortran_DOUBLE", "double_f", 16, H5_FORTRAN_HAS_DOUBLE_NATIVE_16_KIND);
+ } else {
+#if defined H5_FORTRAN_HAS_REAL_NATIVE_8_KIND /* Fall back to 8 byte floats */
+ writeFloatToFiles("Fortran_DOUBLE", "double_f", 8, H5_FORTRAN_HAS_REAL_NATIVE_8_KIND);
+ }
+#elif defined H5_FORTRAN_HAS_REAL_NATIVE_4_KIND /* Fall back to 4 byte floats */
+ writeFloatToFiles("Fortran_DOUBLE", "double_f", 4, H5_FORTRAN_HAS_REAL_NATIVE_4_KIND);
+ }
+#else
+ /* Error: couldn't find a size for double_f when fortran has 16 byte reals */
+ return -1;
+ }
+#endif
+
#elif defined H5_FORTRAN_HAS_DOUBLE_NATIVE_8_KIND
writeFloatToFiles("Fortran_DOUBLE", "double_f", 8, H5_FORTRAN_HAS_DOUBLE_NATIVE_8_KIND);
#else
@@ -541,6 +555,14 @@ int main(void)
return -1;
#endif
+ /* Need the buffer size for the fortran derive type 'hdset_reg_ref_t_f03'
+ * in order to be interoperable with C's structure, the C buffer size
+ * H5R_DSET_REG_REF_BUF_SIZE is (sizeof(haddr_t)+4)
+ */
+
+ fprintf(fort_header, " INTEGER, PARAMETER :: H5R_DSET_REG_REF_BUF_SIZE_F = %u\n", H5_SIZEOF_HADDR_T + 4 );
+
+
/* Close files */
endCfile();
endFfile();
diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in
index c362c2e..fe32739 100644
--- a/fortran/src/Makefile.in
+++ b/fortran/src/Makefile.in
@@ -297,6 +297,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -311,6 +312,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -507,7 +509,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
# Include src directory in both Fortran and C flags (C compiler is used
diff --git a/fortran/src/h5fc.in b/fortran/src/h5fc.in
index 2d7b5b4..4985650 100644
--- a/fortran/src/h5fc.in
+++ b/fortran/src/h5fc.in
@@ -98,6 +98,10 @@ FFLAGS="${HDF5_FFLAGS:-$FFLAGSBASE}"
LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
LIBS="${HDF5_LIBS:-$LIBSBASE}"
+# If static was disabled, @HDF5_USE_SHLIB@ will be yes. In that case
+# HDF5_USE_SHLIB should be set to yes because there are no static
+# lib files.
+HDF5_USE_SHLIB="@HDF5_USE_SHLIB@"
USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
usage() {
diff --git a/fortran/src/hdf5_fortrandll.def b/fortran/src/hdf5_fortrandll.def
index 29e83f5..267c27f 100644
--- a/fortran/src/hdf5_fortrandll.def
+++ b/fortran/src/hdf5_fortrandll.def
@@ -284,10 +284,25 @@ H5L_mp_H5LIS_REGISTERED_F
H5L_mp_H5LMOVE_F
H5L_mp_H5LGET_NAME_BY_IDX_F
; H5O
+H5O_mp_H5OCLOSE_F
H5O_mp_H5OCOPY_F
+H5O_mp_H5ODECR_REFCOUNT_F
+H5O_mp_H5OEXISTS_BY_NAME_F
+H5O_mp_H5OGET_COMMENT_F
+H5O_mp_H5OGET_COMMENT_BY_NAME_F
+H5O_mp_H5OGET_INFO_BY_IDX_F
+H5O_mp_H5OGET_INFO_BY_NAME_F
+H5O_mp_H5OGET_INFO_F
+H5O_mp_H5OINCR_REFCOUNT_F
H5O_mp_H5OLINK_F
-H5O_mp_H5OOPEN_F
H5O_mp_H5OOPEN_BY_ADDR_F
+H5O_mp_H5OOPEN_BY_IDX_F
+H5O_mp_H5OOPEN_F
+H5O_mp_H5OSET_COMMENT_F
+H5O_mp_H5OSET_COMMENT_BY_NAME_F
+H5O_mp_H5OVISIT_BY_NAME_F
+H5O_mp_H5OVISIT_F
+
; H5P
H5P_mp_H5PCREATE_F
H5P_mp_H5PSET_PRESERVE_F
@@ -429,7 +444,8 @@ H5R_PROVISIONAL_mp_H5RCREATE_OBJECT_F
H5R_PROVISIONAL_mp_H5RCREATE_REGION_F
H5R_PROVISIONAL_mp_H5RDEREFERENCE_OBJECT_F
H5R_PROVISIONAL_mp_H5RDEREFERENCE_REGION_F
-H5R_mp_H5RGET_REGION_REGION_F
+H5R_PROVISIONAL_mp_H5RGET_REGION_REGION_F
+
H5R_mp_H5RGET_OBJECT_TYPE_OBJ_F
H5R_PROVISIONAL_mp_H5RGET_NAME_OBJECT_F
H5R_PROVISIONAL_mp_H5RGET_NAME_REGION_F
diff --git a/fortran/src/phdf5_fortrandll.def b/fortran/src/phdf5_fortrandll.def
index 7a196cd..c3342d3 100644
--- a/fortran/src/phdf5_fortrandll.def
+++ b/fortran/src/phdf5_fortrandll.def
@@ -528,4 +528,9 @@ H5Z_mp_H5ZFILTER_AVAIL_F
H5Z_mp_H5ZGET_FILTER_INFO_F
; Parallel
H5FDMPIO_mp_H5PSET_FAPL_MPIO_F
+H5FDMPIO_mp_H5PGET_FAPL_MPIO_F
H5FDMPIO_mp_H5PSET_DXPL_MPIO_F
+H5FDMPIO_mp_H5PGET_DXPL_MPIO_F
+H5FDMPIO_mp_H5PSET_FAPL_MPIPOSIX_F
+H5FDMPIO_mp_H5PGET_FAPL_MPIPOSIX_F
+H5FDMPIO_mp_H5PGET_MPIO_ACTUAL_IO_MODE_F \ No newline at end of file
diff --git a/fortran/test/CMakeLists.txt b/fortran/test/CMakeLists.txt
index d19baea..3a3d084 100644
--- a/fortran/test/CMakeLists.txt
+++ b/fortran/test/CMakeLists.txt
@@ -106,6 +106,7 @@ IF (FORTRAN_HAVE_ISO_C_BINDING AND HDF5_ENABLE_F2003)
tH5F.f90
tH5E_F03.f90
tH5L_F03.f90
+ tH5O_F03.f90
tH5P_F03.f90
tH5T_F03.f90
)
diff --git a/fortran/test/Makefile.am b/fortran/test/Makefile.am
index b261785..42dd127 100644
--- a/fortran/test/Makefile.am
+++ b/fortran/test/Makefile.am
@@ -68,7 +68,7 @@ fortranlib_test_1_8_SOURCES = fortranlib_test_1_8.f90 \
if FORTRAN_2003_CONDITIONAL_F
fortranlib_test_F03_SOURCES = fortranlib_test_F03.f90 \
- tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5P_F03.f90 tH5T_F03.f90
+ tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5O_F03.f90 tH5P_F03.f90 tH5T_F03.f90
endif
diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in
index b4f0c4c..694e553 100644
--- a/fortran/test/Makefile.in
+++ b/fortran/test/Makefile.in
@@ -136,11 +136,13 @@ fortranlib_test_1_8_LDADD = $(LDADD)
fortranlib_test_1_8_DEPENDENCIES = libh5test_fortran.la $(LIBH5TEST) \
$(LIBH5F) $(LIBHDF5)
am__fortranlib_test_F03_SOURCES_DIST = fortranlib_test_F03.f90 \
- tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5P_F03.f90 tH5T_F03.f90
+ tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5O_F03.f90 tH5P_F03.f90 \
+ tH5T_F03.f90
@FORTRAN_2003_CONDITIONAL_F_TRUE@am_fortranlib_test_F03_OBJECTS = fortranlib_test_F03.$(OBJEXT) \
@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5F.$(OBJEXT) \
@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5E_F03.$(OBJEXT) \
@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5L_F03.$(OBJEXT) \
+@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5O_F03.$(OBJEXT) \
@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5P_F03.$(OBJEXT) \
@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5T_F03.$(OBJEXT)
fortranlib_test_F03_OBJECTS = $(am_fortranlib_test_F03_OBJECTS)
@@ -280,6 +282,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -294,6 +297,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -515,7 +519,7 @@ fortranlib_test_1_8_SOURCES = fortranlib_test_1_8.f90 \
tH5F.f90 tH5O.f90 tH5A_1_8.f90 tH5G_1_8.f90
@FORTRAN_2003_CONDITIONAL_F_TRUE@fortranlib_test_F03_SOURCES = fortranlib_test_F03.f90 \
-@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5P_F03.f90 tH5T_F03.f90
+@FORTRAN_2003_CONDITIONAL_F_TRUE@ tH5F.f90 tH5E_F03.f90 tH5L_F03.f90 tH5O_F03.f90 tH5P_F03.f90 tH5T_F03.f90
fflush1_SOURCES = fflush1.f90
fflush2_SOURCES = fflush2.f90
diff --git a/fortran/test/fortranlib_test_1_8.f90 b/fortran/test/fortranlib_test_1_8.f90
index 321cb99..d3ced72 100644
--- a/fortran/test/fortranlib_test_1_8.f90
+++ b/fortran/test/fortranlib_test_1_8.f90
@@ -94,12 +94,6 @@ PROGRAM fortranlibtest
total_error)
ret_total_error = 0
- CALL test_nbit(cleanup, ret_total_error )
- CALL write_test_status(ret_total_error, &
- ' Testing nbit filter', &
- total_error)
-
- ret_total_error = 0
CALL test_scaleoffset(cleanup, ret_total_error )
CALL write_test_status(ret_total_error, &
' Testing scaleoffset filter', &
@@ -401,141 +395,6 @@ SUBROUTINE test_h5s_encode(cleanup, total_error)
END SUBROUTINE test_h5s_encode
!-------------------------------------------------------------------------
-! Function: test_nbit
-!
-! Purpose: Tests (real) datatype for nbit filter
-!
-! Return: Success: 0
-! Failure: >0
-!
-! Programmer: M. Scot Breitenfeld
-! Decemeber 7, 2010
-!
-! Modifications:
-!
-!-------------------------------------------------------------------------
-!
-
-SUBROUTINE test_nbit(cleanup, total_error )
-
- USE HDF5
-
- IMPLICIT NONE
- INTEGER, PARAMETER :: wp = KIND(1.0)
- LOGICAL, INTENT(IN) :: cleanup
- INTEGER, INTENT(INOUT) :: total_error
- INTEGER(hid_t) :: file
-
- INTEGER(hid_t) :: dataset, datatype, space, dc
- INTEGER(hsize_t), DIMENSION(1:2) :: dims = (/2,5/)
- INTEGER(hsize_t), DIMENSION(1:2) :: chunk_dim = (/2,5/)
- ! orig_data[] are initialized to be within the range that can be represented by
- ! dataset datatype (no precision loss during datatype conversion)
- !
- REAL(kind=wp), DIMENSION(1:2,1:5) :: orig_data = RESHAPE( (/188384.00, 19.103516, -1.0831790e9, -84.242188, &
- 5.2045898, -49140.000, 2350.2500, -3.2110596e-1, 6.4998865e-5, -0.0000000/) , (/2,5/) )
- REAL(kind=wp), DIMENSION(1:2,1:5) :: new_data
- INTEGER(size_t) :: PRECISION, offset
- INTEGER :: error
- LOGICAL :: status
- INTEGER*8 :: ii
- INTEGER(size_t) :: i, j
-
-
- ! check to see if filter is available
- CALL H5Zfilter_avail_f(H5Z_FILTER_NBIT_F, status, error)
- IF(.NOT.status)THEN ! We don't have H5Z_FILTER_NBIT_F filter
- total_error = -1 ! so return
- RETURN
- ENDIF
-
- CALL H5Fcreate_f("nbit.h5", H5F_ACC_TRUNC_F, file, error)
- CALL check("H5Fcreate_f", error, total_error)
-
- ! Define dataset datatype (integer), and set precision, offset
- CALL H5Tcopy_f(H5T_IEEE_F32BE, datatype, error)
- CALL CHECK(" H5Tcopy_f", error, total_error)
- CALL H5Tset_fields_f(datatype, 26_size_t, 20_size_t, 6_size_t, 7_size_t, 13_size_t, error)
- CALL CHECK(" H5Tset_fields_f", error, total_error)
- offset = 7
- CALL H5Tset_offset_f(datatype, offset, error)
- CALL CHECK(" H5Tset_offset_f", error, total_error)
- PRECISION = 20
- CALL H5Tset_precision_f(datatype,PRECISION, error)
- CALL CHECK(" H5Tset_precision_f", error, total_error)
-
- CALL H5Tset_size_f(datatype, 4_size_t, error)
- CALL CHECK(" H5Tset_size_f", error, total_error)
-
- CALL H5Tset_ebias_f(datatype, 31_size_t, error)
- CALL CHECK(" H5Tset_ebias_f", error, total_error)
-
- ! Create the data space
- CALL H5Screate_simple_f(2, dims, space, error)
- CALL CHECK(" H5Screate_simple_f", error, total_error)
-
- ! USE nbit filter
- CALL H5Pcreate_f(H5P_DATASET_CREATE_F, dc, error)
- CALL CHECK(" H5Pcreate_f", error, total_error)
-
- CALL H5Pset_chunk_f(dc, 2, chunk_dim, error)
- CALL CHECK(" H5Pset_chunk_f", error, total_error)
- CALL H5Pset_nbit_f(dc, error)
- CALL CHECK(" H5Pset_nbit_f", error, total_error)
-
- ! Create the dataset
- CALL H5Dcreate_f(file, "nbit_real", datatype, &
- space, dataset, error, dc)
- CALL CHECK(" H5Dcreate_f", error, total_error)
-
- !----------------------------------------------------------------------
- ! STEP 1: Test nbit by setting up a chunked dataset and writing
- ! to it.
- !----------------------------------------------------------------------
- !
- CALL H5Dwrite_f(dataset, H5T_NATIVE_REAL, orig_data, dims, error)
- CALL CHECK(" H5Dwrite_f", error, total_error)
-
- !----------------------------------------------------------------------
- ! STEP 2: Try to read the data we just wrote.
- !----------------------------------------------------------------------
- !
- CALL H5Dread_f(dataset, H5T_NATIVE_REAL, new_data, dims, error)
- CALL CHECK(" H5Dread_f", error, total_error)
-
- ! Check that the values read are the same as the values written
- ! Assume size of long long = size of double
- !
- i_loop: DO i = 1, dims(1)
- j_loop: DO j = 1, dims(2)
- IF(.NOT.(orig_data(i,j).EQ.orig_data(i,j))) CYCLE ! skip IF value is NaN
- IF(new_data(i,j) .NE. orig_data(i,j))THEN
- total_error = total_error + 1
- WRITE(*,'(" Read different values than written.")')
- WRITE(*,'(" At index ", 2(1X,I0))') i, j
- EXIT i_loop
- END IF
- ENDDO j_loop
- ENDDO i_loop
-
- !----------------------------------------------------------------------
- ! Cleanup
- !----------------------------------------------------------------------
- !
- CALL H5Tclose_f(datatype, error)
- CALL CHECK(" H5Tclose_f", error, total_error)
- CALL H5Pclose_f(dc, error)
- CALL CHECK(" H5Pclose_f", error, total_error)
- CALL H5Sclose_f(space, error)
- CALL CHECK(" H5Sclose_f", error, total_error)
- CALL H5Dclose_f(dataset, error)
- CALL CHECK(" H5Dclose_f", error, total_error)
- CALL H5Fclose_f(file, error)
- CALL CHECK(" H5Fclose_f", error, total_error)
-
-END SUBROUTINE test_nbit
-
-!-------------------------------------------------------------------------
! Function: test_scaleoffset
!
! Purpose: Tests the integer datatype for scaleoffset filter
diff --git a/fortran/test/fortranlib_test_F03.f90 b/fortran/test/fortranlib_test_F03.f90
index 1b69f7f..a03241c 100644
--- a/fortran/test/fortranlib_test_F03.f90
+++ b/fortran/test/fortranlib_test_F03.f90
@@ -64,10 +64,7 @@ PROGRAM fortranlibtest_F03
! CALL write_test_status(ret_total_error, ' Test error API based on data I/O', total_error)
WRITE(*,*)
-! write(*,*)
-! write(*,*) '========================================='
-! write(*,*) 'Testing DATATYPE interface '
-! write(*,*) '========================================='
+
ret_total_error = 0
CALL test_array_compound_atomic(ret_total_error)
CALL write_test_status(ret_total_error, ' Testing 1-D Array of Compound Datatypes Functionality', total_error)
@@ -117,16 +114,16 @@ PROGRAM fortranlibtest_F03
CALL write_test_status(ret_total_error, ' Testing writing/reading string datatypes, using C_LOC', total_error)
ret_total_error = 0
+ CALL vl_test_special_char(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing string datatypes containing control characters', total_error)
+
+ ret_total_error = 0
CALL test_create(ret_total_error)
- CALL write_test_status(ret_total_error, &
- ' Testing filling functions', &
- total_error)
+ CALL write_test_status(ret_total_error, ' Testing filling functions', total_error)
ret_total_error = 0
CALL test_h5kind_to_type(total_error)
- CALL write_test_status(ret_total_error, &
- ' Test function h5kind_to_type', &
- total_error)
+ CALL write_test_status(ret_total_error, ' Test function h5kind_to_type', total_error)
ret_total_error = 0
CALL test_array_bkg(ret_total_error)
@@ -138,14 +135,30 @@ PROGRAM fortranlibtest_F03
ret_total_error = 0
CALL test_iter_group(ret_total_error)
- CALL write_test_status(ret_total_error, ' Testing Group Iteration Functionality', total_error)
+ CALL write_test_status(ret_total_error, ' Testing group iteration functionality', total_error)
+
+ ret_total_error = 0
+ CALL test_nbit(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing nbit filter', total_error)
+
! write(*,*)
! write(*,*) '========================================='
! write(*,*) 'Testing GROUP interface '
! write(*,*) '========================================='
-
+ ret_total_error = 0
+ CALL test_h5o_refcount(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing object functions ', total_error)
+
+ ret_total_error = 0
+ CALL obj_visit(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing object visiting functions ', total_error)
+
+ ret_total_error = 0
+ CALL obj_info(ret_total_error)
+ CALL write_test_status(ret_total_error, ' Testing object info functions ', total_error)
+
WRITE(*,*)
WRITE(*,*) ' ============================================ '
diff --git a/fortran/test/tH5A.f90 b/fortran/test/tH5A.f90
index 03522f7..cecaded 100644
--- a/fortran/test/tH5A.f90
+++ b/fortran/test/tH5A.f90
@@ -100,7 +100,7 @@
CHARACTER(LEN=35), DIMENSION(2) :: aread_data ! Buffer to put read back
! string attr data
CHARACTER :: attr_character_data = 'A'
- DOUBLE PRECISION, DIMENSION(1) :: attr_double_data = 3.459
+ REAL(KIND=Fortran_DOUBLE), DIMENSION(1) :: attr_double_data = 3.459
REAL, DIMENSION(1) :: attr_real_data = 4.0
INTEGER, DIMENSION(1) :: attr_integer_data = 5
INTEGER(HSIZE_T), DIMENSION(7) :: data_dims
@@ -109,7 +109,7 @@
CHARACTER :: aread_character_data ! variable to put read back Character attr data
INTEGER, DIMENSION(1) :: aread_integer_data ! variable to put read back integer attr data
INTEGER, DIMENSION(1) :: aread_null_data = 7 ! variable to put read back null attr data
- DOUBLE PRECISION, DIMENSION(1) :: aread_double_data ! variable to put read back double attr data
+ REAL(KIND=Fortran_DOUBLE), DIMENSION(1) :: aread_double_data ! variable to put read back double attr data
REAL, DIMENSION(1) :: aread_real_data ! variable to put read back real attr data
!
diff --git a/fortran/test/tH5O.f90 b/fortran/test/tH5O.f90
index 247d1d0..b68e7ca 100644
--- a/fortran/test/tH5O.f90
+++ b/fortran/test/tH5O.f90
@@ -35,15 +35,8 @@ SUBROUTINE test_h5o(cleanup, total_error)
INTEGER, INTENT(OUT) :: total_error
INTEGER :: error
- ! /* Output message about test being performed */
- ! WRITE(*,*) "Testing Objects"
-
-!!$ test_h5o_open(); /* Test generic OPEN FUNCTION */
-!!$ test_h5o_open_by_addr(); /* Test opening objects by address */
-!!$ test_h5o_close(); /* Test generic CLOSE FUNCTION */
-!!$ test_h5o_refcount(); /* Test incrementing and decrementing reference count */
- CALL test_h5o_plist(total_error) ! /* Test object creation properties */
- CALL test_h5o_link(total_error) ! /* Test object link routine */
+ CALL test_h5o_plist(total_error) ! Test object creation properties
+ CALL test_h5o_link(total_error) ! Test object link routine
IF(cleanup) CALL h5_cleanup_f("TestFile", H5P_DEFAULT_F, error)
CALL check("h5_cleanup_f", error, total_error)
@@ -100,6 +93,19 @@ SUBROUTINE test_h5o_link(total_error)
INTEGER(HSIZE_T), DIMENSION(1:1) :: dims2 = (/dim0/) ! size read/write buffer
INTEGER , DIMENSION(1:dim0) :: wdata2, & ! Write buffer
rdata2 ! Read buffer
+ LOGICAL :: link_exists
+ CHARACTER(LEN=8) :: chr_exact
+ CHARACTER(LEN=10) :: chr_lg
+ INTEGER(size_t) :: nlinks
+ INTEGER(HID_T) :: plist = -1
+
+ CHARACTER(LEN=20) :: dset_comment = "dataset comment"
+ CHARACTER(LEN=13) :: grp_comment = "group comment"
+ CHARACTER(LEN=10) :: comment_sm ! to small comment sized buffer
+ CHARACTER(LEN=15) :: comment ! exact comment sized buffer
+ CHARACTER(LEN=20) :: comment_lg ! large comment sized buffer
+ INTEGER(HSSIZE_T) :: comment_size
+ INTEGER(SIZE_T) :: comment_size2
! Initialize the raw data
DO i = 1, TEST6_DIM1
@@ -131,8 +137,6 @@ SUBROUTINE test_h5o_link(total_error)
CALL H5Pset_libver_bounds_f(fapl_id, H5F_LIBVER_LATEST_F, H5F_LIBVER_LATEST_F, error)
CALL check("H5Pset_libver_bounds_f",error, total_error)
-!!$ ret = H5Pset_libver_bounds(fapl_id, (new_format ? H5F_LIBVER_LATEST : H5F_LIBVER_EARLIEST), H5F_LIBVER_LATEST);
-
! Create a new HDF5 file
CALL H5Fcreate_f(TEST_FILENAME, H5F_ACC_TRUNC_F, file_id, error, H5P_DEFAULT_F, fapl_id)
CALL check("H5Fcreate_f", error, total_error)
@@ -155,10 +159,9 @@ SUBROUTINE test_h5o_link(total_error)
! Create a dataset with no name using the committed datatype
CALL H5Dcreate_anon_f(file_id, type_id, space_id, dset_id, error ) ! using no optional parameters
CALL check("H5Dcreate_anon_f",error,total_error)
-
-
+ !
! Verify that we can write to and read from the dataset
-
+ !
! Write the data to the dataset
!EP CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, wdata, dims, error, &
@@ -199,7 +202,6 @@ SUBROUTINE test_h5o_link(total_error)
CALL h5tclose_f(type_id, error)
CALL check("h5tclose_f", error, total_error)
-
! Re-open datatype using new link
CALL H5Topen_f(group_id, "datatype", type_id, error)
CALL check("h5topen_f", error, total_error)
@@ -208,12 +210,10 @@ SUBROUTINE test_h5o_link(total_error)
CALL H5Olink_f(group_id, file_id, "/group", error)
CALL check("H5Olink_f", error, total_error)
-
CALL h5gclose_f(group_id, error)
CALL check("h5gclose_f",error,total_error)
! Open dataset through root group and verify its data
-
CALL H5Dopen_f(file_id, "/group/inter_group/dataset", dset_id, error)
CALL check("test_lcpl.h5dopen_f", error, total_error)
@@ -236,7 +236,6 @@ SUBROUTINE test_h5o_link(total_error)
CALL h5tclose_f(type_id, error)
CALL check("h5tclose_f",error,total_error)
-
! Close remaining IDs
CALL h5sclose_f(space_id, error)
CALL check("h5sclose_f",error,total_error)
@@ -264,16 +263,214 @@ SUBROUTINE test_h5o_link(total_error)
CALL check("h5gcreate_f", error, total_error)
CALL h5gcreate_f(file_id,"/G1/G2/G3",group_id,error)
CALL check("h5gcreate_f", error, total_error)
+
+ ! Try putting a comment on the group /G1/G2/G3 by name
+ CALL h5oset_comment_by_name_f(file_id, "/G1/G2/G3", grp_comment, error)
+ CALL check("h5oset_comment_by_name_f", error, total_error)
+
+ comment_lg = ' '
+
+ CALL h5oget_comment_by_name_f(file_id, "/G1/G2/G3", comment_lg, error)
+ CALL check("h5oget_comment_by_name_f", error, total_error)
+
+ IF(comment_lg(1:13).NE.grp_comment)THEN
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+ IF(comment_lg(14:20).NE.' ')THEN ! make sure no NULL terminator
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+
+ ! Try putting a comment on the group /G1/G2/G3 by name with trailing blanks
+
+ CALL h5oset_comment_by_name_f(file_id, "/G1/G2/G3"//' ', grp_comment, error)
+ CALL check("h5oset_comment_by_name_f", error, total_error)
+
+ comment_lg = ' '
+
+ CALL h5oget_comment_by_name_f(file_id, "/G1/G2/G3"//' ', comment_lg, error)
+ CALL check("h5oget_comment_by_name_f", error, total_error)
+
+ IF(comment_lg(1:13).NE.grp_comment)THEN
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+ IF(comment_lg(14:20).NE.' ')THEN ! make sure no NULL terminator
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+
!
! Create the dataset
!
CALL h5dcreate_f(group_id, dataset, H5T_STD_I32LE, space_id, dset_id, error)
CALL check("h5dcreate_f", error, total_error)
+
+ ! Putting a comment on the dataset
+ CALL h5oset_comment_f(dset_id, dset_comment, error)
+ CALL check("h5oset_comment_f", error, total_error)
+
+ ! Try reading into a buffer that is the correct size
+
+ CALL h5oget_comment_f(dset_id, comment, error)
+ CALL check("h5oget_comment_f", error, total_error)
+
+ IF(comment(1:15).NE.dset_comment(1:15))THEN
+ CALL check("h5oget_comment_f", -1, total_error)
+ ENDIF
+
+ ! Try reading into a buffer that is to small
+
+ CALL h5oget_comment_f(dset_id, comment_sm, error)
+ CALL check("h5oget_comment_f", error, total_error)
+
+ IF(comment_sm(1:10).NE.dset_comment(1:10))THEN
+ CALL check("h5oget_comment_f", -1, total_error)
+ ENDIF
+
+ ! Try reading into a buffer that is larger then needed
+
+ comment_lg = ' '
+
+ CALL h5oget_comment_f(dset_id, comment_lg, error)
+ CALL check("h5oget_comment_f", error, total_error)
+
+ IF(comment_lg(1:15).NE.dset_comment)THEN
+ CALL check("h5oget_comment_f", -1, total_error)
+ ENDIF
+ IF(comment_lg(16:20).NE.' ')THEN ! make sure no NULL terminator
+ CALL check("h5oget_comment_f", -1, total_error)
+ ENDIF
+ !
+ ! Check optional parameter
+ !
+ CALL h5oget_comment_f(dset_id, comment_lg, error, comment_size)
+ CALL check("h5oget_comment_f", error, total_error)
+
+ IF( comment_size.NE.15)THEN
+ CALL check("h5oget_comment_f", -1, total_error)
+ ENDIF
+
+ ! CHECK h5oget_comment_by_name_f
+
+ ! Try reading into a buffer that is the correct size
+
+ CALL h5oget_comment_by_name_f(dset_id, ".", comment, error)
+ CALL check("h5oget_comment_by_name_f", error, total_error)
+
+ IF(comment(1:15).NE.dset_comment(1:15))THEN
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+
+ ! Try with trailing blanks in the name
+
+ CALL h5oget_comment_by_name_f(dset_id, ". ", comment, error)
+ CALL check("h5oget_comment_by_name_f", error, total_error)
+
+ IF(comment(1:15).NE.dset_comment(1:15))THEN
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+
+ !
+ ! Check optional parameter
+ !
+ CALL h5oget_comment_by_name_f(dset_id, ". ", comment_lg, error, comment_size2)
+ CALL check("h5oget_comment_by_name_f", error, total_error)
+
+ IF( comment_size2.NE.15)THEN
+ CALL check("h5oget_comment_by_name_f", -1, total_error)
+ ENDIF
+
!
! Write the data to the dataset.
!
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, wdata2, dims2, error)
CALL check("h5dwrite_f", error, total_error)
+
+ ! *************************
+ ! CHECK H5OEXISTS_BY_NAME_F
+ ! *************************
+
+ ! Create a soft link to /G1
+ CALL h5lcreate_soft_f("/G1", file_id, "/G1_LINK", error)
+ CALL check("h5lcreate_soft_f", error, total_error)
+
+
+ ! Create a soft link to /G1000, does not exist
+ CALL h5lcreate_soft_f("/G1000", file_id, "/G1_FALSE", error)
+ CALL check("h5lcreate_soft_f", error, total_error)
+
+ ! Create a soft link to /G1_LINK
+ CALL h5lcreate_soft_f("/G1_FALSE", file_id, "/G2_FALSE", error)
+ CALL check("h5lcreate_soft_f", error, total_error)
+
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,"/G1_LINK", link_exists, error)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should exist
+ IF(.NOT.link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
+
+ chr_exact = "/G1_LINK"
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,chr_exact, link_exists, error, H5P_DEFAULT_F)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should exist
+ IF(.NOT.link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
+
+ chr_lg = "/G1_LINK"
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,chr_lg, link_exists, error, H5P_DEFAULT_F)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should exist
+ IF(.NOT.link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
+
+ chr_lg = "/G1_LINK "
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,chr_lg, link_exists, error, H5P_DEFAULT_F)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should exist
+ IF(.NOT.link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
+
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,"/G1_FALSE", link_exists, error)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should not exist
+ IF(link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
+
+ ! Check optional parameter
+
+ CALL h5pcreate_f(H5P_LINK_ACCESS_F,plist,error)
+ CALL check("h5pcreate_f",error,total_error)
+
+ nlinks = 2
+ CALL h5pset_nlinks_f(plist, nlinks, error)
+ CALL check("h5pset_nlinks_f", error, total_error)
+ ! Ensure that nlinks was set successfully
+ nlinks = 0
+ CALL h5pget_nlinks_f(plist, nlinks, error)
+ CALL check("h5pget_nlinks_f",error,total_error)
+ CALL VERIFY("h5pget_nlinks_f", INT(nlinks), 2, total_error)
+
+ ! See if the link exists
+ CALL h5oexists_by_name_f(file_id,"/G1_LINK", link_exists, error, plist)
+ CALL check("h5oexists_by_name_f", error, total_error)
+
+ ! Object should exist
+ IF(.not.link_exists)THEN
+ CALL check("h5oexists_by_name_f", -1, total_error)
+ ENDIF
!
! Close and release resources.
!
@@ -283,6 +480,14 @@ SUBROUTINE test_h5o_link(total_error)
CALL check("h5sclose_f", error, total_error)
CALL h5gclose_f(group_id, error)
CALL check("h5gclose_f", error, total_error)
+
+ ! Test opening an object by index, note
+ CALL h5oopen_by_idx_f(file_id, "/G1/G2/G3", H5_INDEX_NAME_F, H5_ITER_INC_F, 0_hsize_t, group_id, error)
+ CALL check("h5oopen_by_idx_f", error, total_error)
+
+ CALL h5oclose_f(group_id, error)
+ CALL check("h5gclose_f", error, total_error)
+
!
! create property to pass copy options
!
@@ -324,7 +529,7 @@ SUBROUTINE test_h5o_link(total_error)
CALL h5tcopy_f(H5T_NATIVE_INTEGER, tid, error)
CALL check("h5tcopy_f", error, total_error)
- ! create named datatype
+ ! create named datatype
CALL h5tcommit_f(file_id, NAME_DATATYPE_SIMPLE, tid, error)
CALL check("h5tcommit_f", error, total_error)
@@ -346,8 +551,7 @@ SUBROUTINE test_h5o_link(total_error)
! Compare the datatypes
CALL h5tequal_f(tid, tid2, flag, error)
IF(.NOT.flag)THEN
- WRITE(*,*) "h5ocopy_f FAILED"
- total_error = total_error + 1
+ CALL check("h5ocopy_f FAILED", -1, total_error)
ENDIF
! close the destination datatype
@@ -436,7 +640,6 @@ SUBROUTINE test_h5o_plist(total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", max_compact, (def_max_compact + 1), total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", min_dense, (def_min_dense - 1), total_error)
-
! Create a group, dataset, and committed datatype within the file,
! using the respective type of creation property lists.
!
@@ -472,7 +675,6 @@ SUBROUTINE test_h5o_plist(total_error)
CALL h5sclose_f(dspace, error)
CALL check("h5sclose_f",error,total_error)
-
! Close current creation property lists
CALL h5pclose_f(gcpl,error)
CALL check("h5pclose_f", error, total_error)
@@ -482,7 +684,6 @@ SUBROUTINE test_h5o_plist(total_error)
CALL check("h5pclose_f", error, total_error)
! Retrieve each object's creation property list
-
CALL H5Gget_create_plist_f(grp, gcpl, error)
CALL check("H5Gget_create_plist", error, total_error)
@@ -492,7 +693,6 @@ SUBROUTINE test_h5o_plist(total_error)
CALL H5Dget_create_plist_f(dset, dcpl, error)
CALL check("H5Dget_create_plist_f", error, total_error)
-
! Retrieve attribute phase change values on each creation property list and verify
CALL H5Pget_attr_phase_change_f(gcpl, max_compact, min_dense, error)
CALL check("H5Pget_attr_phase_change_f", error, total_error)
@@ -509,9 +709,7 @@ SUBROUTINE test_h5o_plist(total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", max_compact, (def_max_compact + 1), total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", min_dense, (def_min_dense - 1), total_error)
-
! Close current objects
-
CALL h5pclose_f(gcpl,error)
CALL check("h5pclose_f", error, total_error)
CALL h5pclose_f(dcpl,error)
@@ -552,7 +750,6 @@ SUBROUTINE test_h5o_plist(total_error)
CALL H5Dget_create_plist_f(dset, dcpl, error)
CALL check("H5Dget_create_plist_f", error, total_error)
-
! Retrieve attribute phase change values on each creation property list and verify
CALL H5Pget_attr_phase_change_f(gcpl, max_compact, min_dense, error)
CALL check("H5Pget_attr_phase_change_f", error, total_error)
@@ -569,9 +766,7 @@ SUBROUTINE test_h5o_plist(total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", max_compact, (def_max_compact + 1), total_error)
CALL VERIFY("H5Pget_attr_phase_change_f", min_dense, (def_min_dense - 1), total_error)
-
! Close current objects
-
CALL h5pclose_f(gcpl,error)
CALL check("h5pclose_f", error, total_error)
CALL h5pclose_f(dcpl,error)
diff --git a/fortran/test/tH5O_F03.f90 b/fortran/test/tH5O_F03.f90
new file mode 100644
index 0000000..f060a7d
--- /dev/null
+++ b/fortran/test/tH5O_F03.f90
@@ -0,0 +1,547 @@
+!****h* root/fortran/test/tH5O_F03.f90
+!
+! NAME
+! tH5O_F03.f90
+!
+! FUNCTION
+! Test FORTRAN HDF5 H5O APIs which are dependent on FORTRAN 2003
+! features.
+!
+! COPYRIGHT
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by The HDF Group. *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the files COPYING and Copyright.html. COPYING can be found at the root *
+! of the source code distribution tree; Copyright.html can be found at the *
+! root level of an installed copy of the electronic HDF5 document set and *
+! is linked from the top-level documents page. It can also be found at *
+! http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+! access to either file, you may request a copy from help@hdfgroup.org. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+!
+!*****
+
+! *****************************************
+! *** H 5 O T E S T S
+! *****************************************
+MODULE visit_cb
+
+ USE HDF5
+ USE ISO_C_BINDING
+
+ IMPLICIT NONE
+
+ INTEGER, PARAMETER :: info_size = 9
+
+ !-------------------------------------------------------------------------
+ ! Function: visit_obj_cb
+ !
+ ! Purpose: Callback routine for visiting objects in a file
+ !
+ ! Return: Success: 0
+ ! Failure: -1
+ !
+ ! Programmer: M.S. Breitenfeld
+ ! July 12, 2012
+ ! Adopted from C test.
+ !
+ !-------------------------------------------------------------------------
+ !
+ ! Object visit structs
+ TYPE, bind(c) :: obj_visit_t
+ CHARACTER(LEN=1), DIMENSION(1:180) :: path ! Path to object
+ INTEGER :: type_obj ! type of object
+ END TYPE obj_visit_t
+
+ TYPE, bind(c) :: ovisit_ud_t
+ INTEGER :: idx ! Index in object visit structure
+ TYPE(obj_visit_t), DIMENSION(1:info_size) :: info ! Pointer to the object visit structure to use
+ END TYPE ovisit_ud_t
+
+CONTAINS
+
+ INTEGER FUNCTION visit_obj_cb( group_id, name, oinfo, op_data) bind(C)
+
+ IMPLICIT NONE
+
+ INTEGER(HID_T) :: group_id
+ CHARACTER(LEN=1), DIMENSION(1:180) :: name
+ TYPE(h5o_info_t) :: oinfo
+ TYPE(ovisit_ud_t) :: op_data
+
+ INTEGER :: len, i
+ INTEGER :: idx
+
+ visit_obj_cb = 0
+
+ ! Since the name is generated in C and passed to a Fortran string, it
+ ! will be NULL terminated, so we need to find the end of the string.
+
+ len = 1
+ DO len = 1, 180
+ IF(name(len) .EQ. C_NULL_CHAR) EXIT
+ ENDDO
+
+ len = len - 1
+
+ ! Check for correct object information
+
+ idx = op_data%idx
+
+ DO i = 1, len
+ IF(op_data%info(idx)%path(i)(1:1) .NE. name(i)(1:1))THEN
+ visit_obj_cb = -1
+ RETURN
+ ENDIF
+
+ IF(op_data%info(idx)%type_obj .NE. oinfo%type)THEN
+ visit_obj_cb = -1
+ RETURN
+ ENDIF
+
+ ENDDO
+
+ ! Advance to next location in expected output
+ op_data%idx = op_data%idx + 1
+
+ END FUNCTION visit_obj_cb
+
+END MODULE visit_cb
+
+!/****************************************************************
+!**
+!** test_h5o_refcount(): Test H5O refcounting functions.
+!**
+!****************************************************************/
+
+SUBROUTINE test_h5o_refcount(total_error)
+
+ USE HDF5
+ USE ISO_C_BINDING
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+
+ CHARACTER(LEN=11), PARAMETER :: FILENAME = "th5o_ref.h5"
+ INTEGER, PARAMETER :: DIM0 = 5
+ INTEGER, PARAMETER :: DIM1 = 10
+ INTEGER(hid_t) :: fid ! HDF5 File ID
+ INTEGER(hid_t) :: grp, dset, dtype, dspace ! Object identifiers
+ TYPE(h5o_info_t) :: oinfo ! Object info struct
+ INTEGER(hsize_t), DIMENSION(1:2) :: dims
+ INTEGER :: error ! Value returned from API calls
+
+ ! Create a new HDF5 file
+ CALL h5fcreate_f(FILENAME,H5F_ACC_TRUNC_F,fid,error)
+ CALL check("h5fcreate_f", error, total_error)
+
+ ! Create a group, dataset, and committed datatype within the file
+ ! Create the group
+ CALL h5gcreate_f(fid, "group", grp, error)
+ CALL check("h5gcreate_f",error, total_error)
+
+ ! Commit the type inside the group
+ CALL h5tcopy_f(H5T_NATIVE_INTEGER, dtype, error)
+ CALL check("H5Tcopy_f",error, total_error)
+ CALL h5tcommit_f(fid, "datatype", dtype, error)
+ CALL check("h5tcommit_f", error, total_error)
+
+ ! Create the data space for the dataset.
+ dims(1) = DIM0
+ dims(2) = DIM1
+
+ CALL h5screate_simple_f(2, dims, dspace, error)
+ CALL check("h5screate_simple_f", error, total_error)
+
+ ! Create the dataset.
+ CALL h5dcreate_f(fid, "dataset", H5T_NATIVE_INTEGER, dspace, dset, error)
+ CALL check("h5dcreate_f", error, total_error)
+ CALL h5sclose_f(dspace, error)
+ CALL check("h5sclose_f", error, total_error)
+
+ ! Get ref counts for each object. They should all be 1, since each object has a hard link.
+ CALL h5oget_info_by_name_f(fid, "group", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+
+ ! Check h5oget_info
+ CALL h5oget_info_f(grp, oinfo, error)
+ CALL check("h5oget_info_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_f", -1, total_error)
+ ENDIF
+ IF(oinfo%type.NE.H5O_TYPE_GROUP_F)THEN
+ CALL check("h5oget_info_f", -1, total_error)
+ ENDIF
+
+ ! Increment each object's reference count.
+ CALL h5oincr_refcount_f(grp, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+ CALL h5oincr_refcount_f(dtype, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+ CALL h5oincr_refcount_f(dset, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+
+ ! Get ref counts for each object. They should all be 2 now.
+ CALL h5oget_info_by_name_f(fid, "group", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.2)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.2)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.2)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+
+ ! Decrement the reference counts and check that they decrease back to 1.
+ CALL h5odecr_refcount_f(grp, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+ CALL h5odecr_refcount_f(dtype, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+ CALL h5odecr_refcount_f(dset, error)
+ CALL check("h5oincr_refcount_f", error, total_error)
+
+ CALL h5oget_info_by_name_f(fid, "group", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+ CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error)
+ CALL check("h5oget_info_by_name_f", error, total_error)
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_name_f", -1, total_error)
+ ENDIF
+
+ CALL h5gclose_f(grp, error)
+ CALL check("h5gclose_f",error, total_error)
+ CALL h5tclose_f(dtype, error)
+ CALL check("h5tclose_f",error, total_error)
+ CALL h5dclose_f(dset, error)
+ CALL check("h5dclose_f",error, total_error)
+ CALL h5fclose_f(fid, error)
+ CALL check("h5fclose_f",error, total_error)
+
+END SUBROUTINE test_h5o_refcount
+
+!****************************************************************
+!**
+!** test_h5o_refcount(): Test H5O visit functions.
+!**
+!****************************************************************
+
+SUBROUTINE obj_visit(total_error)
+
+ USE HDF5
+
+ USE visit_cb
+ USE ISO_C_BINDING
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+
+ TYPE(ovisit_ud_t), TARGET :: udata ! User-data for visiting
+ INTEGER(hid_t) :: fid = -1
+ INTEGER(hid_t) :: gid = -1 ! Group ID
+ TYPE(C_PTR) :: f_ptr
+ TYPE(C_FUNPTR) :: fun_ptr
+ CHARACTER(LEN=180) :: object_name
+ INTEGER :: ret_val
+ INTEGER :: error
+
+ ! Construct "interesting" file to visit
+ CALL build_visit_file(fid)
+
+ ! Inialize udata for testing purposes
+ udata%info(1)%path(1:1) ="."
+ udata%info(1)%type_obj = H5O_TYPE_GROUP_F
+ udata%info(2)%path(1:12) = &
+ (/"D","a","t","a","s","e","t","_","z","e","r","o"/)
+ udata%info(2)%type_obj =H5O_TYPE_DATASET_F
+ udata%info(3)%path(1:6) = &
+ (/"G","r","o","u","p","1"/)
+ udata%info(3)%type_obj = H5O_TYPE_GROUP_F
+ udata%info(4)%path(1:18) =&
+ (/"G","r","o","u","p","1","/","D","a","t","a","s","e","t","_","o","n","e"/)
+ udata%info(4)%type_obj = H5O_TYPE_DATASET_F
+ udata%info(5)%path(1:13) =&
+ (/"G","r","o","u","p","1","/","G","r","o","u","p","2"/)
+ udata%info(5)%type_obj = H5O_TYPE_GROUP_F
+ udata%info(6)%path(1:25) =&
+ (/"G","r","o","u","p","1","/","G","r","o","u","p","2","/","D","a","t","a","s","e","t","_","t","w","o"/)
+ udata%info(6)%type_obj = H5O_TYPE_DATASET_F
+ udata%info(7)%path(1:22) =&
+ (/"G","r","o","u","p","1","/","G","r","o","u","p","2","/","T","y","p","e","_","t","w","o"/)
+ udata%info(7)%type_obj = H5O_TYPE_NAMED_DATATYPE_F
+ udata%info(8)%path(1:15) =&
+ (/"G","r","o","u","p","1","/","T","y","p","e","_","o","n","e"/)
+ udata%info(8)%type_obj = H5O_TYPE_NAMED_DATATYPE_F
+ udata%info(9)%path(1:9) =&
+ (/"T","y","p","e","_","z","e","r","o"/)
+ udata%info(9)%type_obj = H5O_TYPE_NAMED_DATATYPE_F
+
+ ! Visit all the objects reachable from the root group (with file ID)
+ udata%idx = 1
+
+ fun_ptr = C_FUNLOC(visit_obj_cb)
+ f_ptr = C_LOC(udata)
+
+ ! Test h5ovisit_f
+ CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error)
+ CALL check("h5ovisit_f", error, total_error)
+ IF(ret_val.LT.0)THEN
+ CALL check("h5ovisit_f", -1, total_error)
+ ENDIF
+
+ ! Test h5ovisit_by_name_f
+
+ object_name = "/"
+ udata%idx = 1
+
+ CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error)
+ CALL check("h5ovisit_by_name_f", error, total_error)
+ IF(ret_val.LT.0)THEN
+ CALL check("h5ovisit_by_name_f", -1, total_error)
+ ENDIF
+
+ CALL h5fclose_f(fid, error)
+ CALL check("h5fclose_f",error, total_error)
+
+END SUBROUTINE obj_visit
+
+!****************************************************************
+!**
+!** test_h5o_refcount(): Test H5O info functions.
+!**
+!****************************************************************
+
+SUBROUTINE obj_info(total_error)
+
+ USE HDF5
+ USE ISO_C_BINDING
+ IMPLICIT NONE
+
+ INTEGER, INTENT(INOUT) :: total_error
+
+ INTEGER(hid_t) :: fid = -1 ! File ID
+ INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs
+ INTEGER(hid_t) :: did ! Dataset ID
+ INTEGER(hid_t) :: sid ! Dataspace ID
+ TYPE(hobj_ref_t_f), TARGET :: wref ! Reference to write
+ TYPE(hobj_ref_t_f), TARGET :: rref ! Reference to read
+ TYPE(H5O_info_t) :: oinfo ! Object info struct
+ INTEGER :: count = 0 ! Count within iterated group
+ INTEGER :: error
+ TYPE(C_PTR) :: f_ptr
+
+ CHARACTER(LEN=6) :: GROUPNAME = "/group"
+ CHARACTER(LEN=6) :: GROUPNAME2 = "group2"
+ CHARACTER(LEN=6) :: GROUPNAME3 = "group3"
+ CHARACTER(LEN=5) :: DSETNAME = "/dset"
+ CHARACTER(LEN=5) :: DSETNAME2 = "dset2"
+
+ ! Create file with a group and a dataset containing an object reference to the group
+ CALL h5fcreate_f("get_info.h5", H5F_ACC_TRUNC_F, fid, error)
+ CALL check("h5fcreate_f",error, total_error)
+
+ ! Create dataspace to use for dataset
+ CALL h5screate_f(H5S_SCALAR_F, sid, error)
+ CALL check("h5screate_f",error,total_error)
+
+ ! Create group to refer to
+ CALL h5gcreate_f(fid, GROUPNAME, gid, error)
+ CALL check("h5gcreate_f",error,total_error)
+
+ ! Create nested groups
+ CALL h5gcreate_f(gid, GROUPNAME2, gid2, error)
+ CALL check("h5gcreate_f",error,total_error)
+ CALL h5gclose_f(gid2, error)
+ CALL check("h5gclose_f",error,total_error)
+
+ CALL h5gcreate_f(gid, GROUPNAME3, gid2, error)
+ CALL check("h5gcreate_f",error,total_error)
+ CALL h5gclose_f(gid2, error)
+ CALL check("h5gclose_f",error,total_error)
+
+ ! Create bottom dataset
+ CALL h5dcreate_f(gid, DSETNAME2, H5T_NATIVE_INTEGER, sid, did, error)
+ CALL check("h5dcreate_f",error, total_error)
+
+ CALL h5dclose_f(did, error)
+ CALL check("h5dclose_f", error, total_error)
+
+ CALL h5gclose_f(gid, error)
+ CALL check("h5gclose_f",error,total_error)
+
+ ! Create dataset
+ CALL h5dcreate_f(fid, DSETNAME, H5T_STD_REF_OBJ, sid, did, error)
+ CALL check("h5dcreate_f",error, total_error)
+
+ f_ptr = C_LOC(wref)
+
+ ! Create reference to group
+ CALL h5rcreate_f(fid, GROUPNAME, H5R_OBJECT_F, f_ptr, error)
+ CALL check("h5rcreate_f",error, total_error)
+
+ ! Write reference to disk
+ CALL h5dwrite_f(did, H5T_STD_REF_OBJ, f_ptr, error)
+ CALL check("h5dwrite_f",error, total_error)
+
+ ! Close objects
+ CALL h5dclose_f(did, error)
+ CALL check("h5dclose_f", error, total_error)
+ CALL h5sclose_f(sid, error)
+ CALL check("h5sclose_f", error, total_error)
+ CALL h5fclose_f(fid, error)
+ CALL check("h5fclose_f", error, total_error)
+
+ ! Re-open file
+ CALL h5fopen_f("get_info.h5", H5F_ACC_RDWR_F, fid, error)
+ CALL check("h5fopen_f", error, total_error)
+
+ ! Re-open dataset
+ CALL h5dopen_f(fid, DSETNAME, did, error)
+ CALL check("h5dopen_f", error, total_error)
+
+ ! Read in the reference
+
+ f_ptr = C_LOC(rref)
+
+ CALL h5dread_f(did, H5T_STD_REF_OBJ, f_ptr, error)
+ CALL check("H5Dread_f",error, total_error)
+
+ ! Dereference to get the group
+
+ CALL h5rdereference_f(did, H5R_OBJECT_F, f_ptr, gid, error)
+ CALL check("h5rdereference_f", error, total_error)
+
+ CALL h5oget_info_by_idx_f(gid, ".", H5_INDEX_NAME_F, H5_ITER_INC_F, 0_hsize_t, oinfo, error)
+ CALL check("h5oget_info_by_idx_f", error, total_error)
+
+ IF(oinfo%rc.NE.1)THEN
+ CALL check("h5oget_info_by_idx_f", -1, total_error)
+ ENDIF
+
+ IF(oinfo%type.NE.H5O_TYPE_DATASET_F)THEN
+ CALL check("h5oget_info_by_idx_f", -1, total_error)
+ ENDIF
+
+ ! Close objects
+ CALL h5dclose_f(did, error)
+ CALL check("h5dclose_f", error, total_error)
+ CALL h5gclose_f(gid, error)
+ CALL check("h5sclose_f", error, total_error)
+ CALL h5fclose_f(fid, error)
+ CALL check("h5fclose_f", error, total_error)
+
+END SUBROUTINE obj_info
+
+!-------------------------------------------------------------------------
+! Function: build_visit_file
+!
+! Purpose: Build an "interesting" file to use for visiting links & objects
+!
+! Programmer: M. Scot Breitenfeld
+! July 12, 2012
+! NOTE: Adapted from C test.
+!
+!-------------------------------------------------------------------------
+!
+
+SUBROUTINE build_visit_file(fid)
+
+ USE HDF5
+ IMPLICIT NONE
+
+ INTEGER(hid_t) :: fid ! File ID
+ INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs
+ INTEGER(hid_t) :: sid = -1 ! Dataspace ID
+ INTEGER(hid_t) :: did = -1 ! Dataset ID
+ INTEGER(hid_t) :: tid = -1 ! Datatype ID
+ CHARACTER(LEN=20) :: filename = 'visit.h5'
+ INTEGER :: error
+
+ ! Create file for visiting
+ CALL H5Fcreate_f(filename, H5F_ACC_TRUNC_F, fid, error)
+
+ ! Create group
+ CALL H5Gcreate_f(fid, "/Group1", gid, error)
+
+ ! Create nested group
+ CALL H5Gcreate_f(gid, "Group2", gid2, error)
+
+ ! Close groups
+ CALL h5gclose_f(gid2, error)
+ CALL h5gclose_f(gid, error)
+
+ ! Create soft links to groups created
+ CALL H5Lcreate_soft_f("/Group1", fid, "/soft_one", error)
+ CALL H5Lcreate_soft_f("/Group1/Group2", fid, "/soft_two", error)
+
+ ! Create dangling soft link
+ CALL H5Lcreate_soft_f("nowhere", fid, "/soft_dangle", error)
+
+ ! Create hard links to all groups
+ CALL H5Lcreate_hard_f(fid, "/", fid, "hard_zero", error)
+ CALL H5Lcreate_hard_f(fid, "/Group1", fid, "hard_one", error)
+ CALL H5Lcreate_hard_f(fid, "/Group1/Group2", fid, "hard_two", error)
+
+ ! Create loops w/hard links
+ CALL H5Lcreate_hard_f(fid, "/Group1", fid, "/Group1/hard_one", error)
+ CALL H5Lcreate_hard_f(fid, "/", fid, "/Group1/Group2/hard_zero", error)
+
+ ! Create dataset in each group
+ CALL H5Screate_f(H5S_SCALAR_F, sid, error)
+
+ CALL H5Dcreate_f(fid, "/Dataset_zero", H5T_NATIVE_INTEGER, sid, did, error)
+ CALL H5Dclose_f(did, error)
+
+ CALL H5Dcreate_f(fid, "/Group1/Dataset_one", H5T_NATIVE_INTEGER, sid, did, error)
+ CALL H5Dclose_f(did, error)
+
+ CALL H5Dcreate_f(fid, "/Group1/Group2/Dataset_two", H5T_NATIVE_INTEGER, sid, did, error)
+ CALL H5Dclose_f(did, error)
+
+ CALL H5Sclose_f(sid, error)
+
+ ! Create named datatype in each group
+ CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error)
+
+ CALL H5Tcommit_f(fid, "/Type_zero", tid, error)
+ CALL H5Tclose_f(tid, error)
+
+ CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error)
+ CALL H5Tcommit_f(fid, "/Group1/Type_one", tid, error)
+ CALL H5Tclose_f(tid, error)
+
+ CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error)
+ CALL H5Tcommit_f(fid, "/Group1/Group2/Type_two", tid, error)
+ CALL H5Tclose_f(tid, error)
+
+END SUBROUTINE build_visit_file
diff --git a/fortran/test/tH5T.f90 b/fortran/test/tH5T.f90
index 9605c45..b42a8e6 100644
--- a/fortran/test/tH5T.f90
+++ b/fortran/test/tH5T.f90
@@ -86,8 +86,8 @@
CHARACTER(LEN=2), DIMENSION(dimsize) :: char_member_out ! Buffer to read data out
INTEGER, DIMENSION(dimsize) :: int_member
INTEGER, DIMENSION(dimsize) :: int_member_out
- DOUBLE PRECISION, DIMENSION(dimsize) :: double_member
- DOUBLE PRECISION, DIMENSION(dimsize) :: double_member_out
+ REAL(KIND=Fortran_DOUBLE), DIMENSION(dimsize) :: double_member
+ REAL(KIND=Fortran_DOUBLE), DIMENSION(dimsize) :: double_member_out
REAL, DIMENSION(dimsize) :: real_member
REAL, DIMENSION(dimsize) :: real_member_out
INTEGER :: i
diff --git a/fortran/test/tH5T_F03.f90 b/fortran/test/tH5T_F03.f90
index 215ac9e..1c4da8b 100644
--- a/fortran/test/tH5T_F03.f90
+++ b/fortran/test/tH5T_F03.f90
@@ -103,7 +103,7 @@ SUBROUTINE test_array_compound_atomic(total_error)
! Create file
CALL h5fcreate_f(FILENAME,H5F_ACC_TRUNC_F,fid1,error)
- CALL check("h5fcreate_f", error, total_error)
+ CALL check("h5fcreate_f", error, total_error)
! Create dataspace for datasets
CALL h5screate_simple_f(SPACE1_RANK, sdims1, sid1, error)
@@ -1976,8 +1976,8 @@ SUBROUTINE t_regref(total_error)
INTEGER(HSIZE_T), DIMENSION(1:1) :: maxdims
INTEGER(hssize_t) :: npoints
- TYPE(hdset_reg_ref_t_f), DIMENSION(1:dim0), TARGET :: wdata ! Write buffer
- TYPE(hdset_reg_ref_t_f), DIMENSION(:), ALLOCATABLE, TARGET :: rdata ! Read buffer
+ TYPE(hdset_reg_ref_t_f03), DIMENSION(1:dim0), TARGET :: wdata ! Write buffer
+ TYPE(hdset_reg_ref_t_f03), DIMENSION(:), ALLOCATABLE, TARGET :: rdata ! Read buffer
INTEGER(size_t) :: size
CHARACTER(LEN=1), DIMENSION(1:ds2dim0,1:ds2dim1), TARGET :: wdata2
@@ -2058,7 +2058,6 @@ SUBROUTINE t_regref(total_error)
CALL check("h5sclose_f",error, total_error)
CALL h5fclose_f(file , error)
CALL check("h5fclose_f",error, total_error)
-
!
! Now we begin the read section of this example.
!
@@ -2095,10 +2094,11 @@ SUBROUTINE t_regref(total_error)
! Open the referenced object, retrieve its region as a
! dataspace selection.
!
- CALL H5Rdereference_f(dset, rdata(i), dset2, error)
+ f_ptr = C_LOC(rdata(i))
+ CALL H5Rdereference_f(dset, H5R_DATASET_REGION_F, f_ptr, dset2, error)
CALL check("H5Rdereference_f",error, total_error)
-
- CALL H5Rget_region_f(dset, rdata(i), space, error)
+
+ CALL H5Rget_region_f(dset, f_ptr, space, error)
CALL check("H5Rget_region_f",error, total_error)
!
@@ -2754,7 +2754,7 @@ SUBROUTINE t_string(total_error)
CALL check("H5Dget_type_f",error, total_error)
CALL H5Tget_size_f(filetype, size, error)
CALL check("H5Tget_size_f",error, total_error)
- CALL VERIFY("H5Tget_size_f", size, sdim, total_error)
+ CALL VERIFY("H5Tget_size_f", INT(size), INT(sdim), total_error)
!
! Get dataspace.
!
@@ -2800,4 +2800,295 @@ SUBROUTINE t_string(total_error)
END SUBROUTINE t_string
+SUBROUTINE vl_test_special_char(cleanup, total_error)
+
+ USE hdf5
+ IMPLICIT NONE
+
+ INTERFACE
+ SUBROUTINE setup_buffer(data_in, line_lengths, char_type)
+ USE hdf5
+ USE ISO_C_BINDING
+ IMPLICIT NONE
+ CHARACTER(len=*), DIMENSION(:) :: data_in
+ INTEGER(size_t), DIMENSION(:) :: line_lengths
+ CHARACTER(KIND=C_CHAR,LEN=*) :: char_type
+ END SUBROUTINE setup_buffer
+ END INTERFACE
+
+ LOGICAL, INTENT(IN) :: cleanup
+ INTEGER, INTENT(OUT) :: total_error
+
+ CHARACTER(LEN=16), PARAMETER :: filename = "t_controlchar.h5"
+ INTEGER, PARAMETER :: line_length = 10
+ INTEGER(hid_t) :: file
+ INTEGER(hid_t) :: dataset0
+ CHARACTER(len=line_length), DIMENSION(1:100) :: data_in
+ CHARACTER(len=line_length), DIMENSION(1:100) :: data_out
+ INTEGER(size_t), DIMENSION(1:100) :: line_lengths
+ INTEGER(hid_t) :: string_id, space, dcpl
+ INTEGER(hsize_t), DIMENSION(1:1) :: dims = (/0/)
+ INTEGER(hsize_t), DIMENSION(1:1) :: max_dims = (/0/)
+ INTEGER(hsize_t), DIMENSION(1:2) :: data_dims = (/0,0/)
+ INTEGER(hsize_t), DIMENSION(1:1) :: chunk =(/10/)
+ INTEGER, PARAMETER :: ncontrolchar = 7
+ CHARACTER(KIND=C_CHAR,LEN=1), DIMENSION(1:ncontrolchar) :: controlchar = &
+ (/C_ALERT, C_BACKSPACE,C_CARRIAGE_RETURN, C_FORM_FEED,C_HORIZONTAL_TAB,C_VERTICAL_TAB, C_NEW_LINE/)
+ INTEGER :: i, j, n, error
+ n = 8
+ !
+ ! Create a new file using the default properties.
+ !
+ CALL h5fcreate_f(filename, H5F_ACC_TRUNC_F, file, error)
+ CALL check("h5fcreate_f",error, total_error)
+
+ max_dims = (/H5S_UNLIMITED_F/)
+
+ !
+ ! Create the memory datatype.
+ !
+ CALL h5tcopy_f(h5t_string, string_id, error)
+ CALL check("h5tcopy_f", error, total_error)
+ CALL h5tset_strpad_f(string_id, h5t_str_nullpad_f, error)
+ CALL check("h5tset_strpad_f", error, total_error)
+ dims(1) = n
+ !
+ ! Create dataspace.
+ !
+ CALL h5screate_simple_f(1, dims, space, error, max_dims)
+ CALL check("h5screate_simple_f", error, total_error)
+ CALL h5pcreate_f(h5p_dataset_create_f, dcpl, error)
+ CALL check("h5pcreate_f", error, total_error)
+ CALL h5pset_chunk_f(dcpl, 1, chunk, error)
+ CALL check("h5pset_chunk_f", error, total_error)
+
+ data_dims(1) = line_length
+ data_dims(2) = n
+ !
+ ! Create data with strings containing various control characters.
+ !
+ DO i = 1, ncontrolchar
+ !
+ ! Create the dataset, for the string with control character and write the string data to it.
+ !
+ CALL h5dcreate_f(file, controlchar(i), string_id, space, dataset0, error, dcpl)
+ CALL check("h5dcreate_f", error, total_error)
+ CALL setup_buffer(data_in(1:n), line_lengths, controlchar(i))
+ CALL h5dwrite_vl_f(dataset0, string_id, data_in(1:n), data_dims, line_lengths(1:n), error, space)
+ CALL check("h5dwrite_vl_f", error, total_error)
+ !
+ ! Read the string back.
+ !
+ CALL h5dread_vl_f(dataset0, string_id, data_out(1:n), data_dims, line_lengths(1:n), error, space)
+ CALL check("h5dread_vl_f", error, total_error)
+
+ DO j = 1, n
+ IF(data_in(j).NE.data_out(j))THEN
+ total_error = total_error + 1
+ EXIT
+ ENDIF
+ ENDDO
+
+ CALL h5dclose_f(dataset0, error)
+ CALL check("h5dclose_f", error, total_error)
+ ENDDO
+
+ CALL h5pclose_f(dcpl, error)
+ CALL check("h5pclose_f", error, total_error)
+ CALL h5sclose_f(space, error)
+ CALL check("h5sclose_f", error, total_error)
+ CALL h5fclose_f(file, error)
+ CALL check("h5fclose_f", error, total_error)
+
+END SUBROUTINE vl_test_special_char
+
+
+SUBROUTINE setup_buffer(data_in, line_lengths, char_type)
+
+ USE HDF5
+ USE ISO_C_BINDING
+
+ IMPLICIT NONE
+
+ ! Creates a simple "Data_in" consisting of the letters of the alphabet,
+ ! one per line, with a control character.
+
+ CHARACTER(len=10), DIMENSION(:) :: data_in
+ INTEGER(size_t), DIMENSION(:) :: line_lengths
+ INTEGER, DIMENSION(1:3) :: letters
+ CHARACTER(LEN=3) :: lets
+ CHARACTER(KIND=C_CHAR,LEN=*) :: char_type
+ CHARACTER(KIND=C_CHAR,LEN=1) :: char_tmp
+ INTEGER :: i, j, n, ff
+
+ ! Convert the letters and special character to integers
+ lets = 'abc'
+
+ READ(lets,'(3A1)') letters
+ READ(char_type,'(A1)') ff
+ n = SIZE(data_in)
+ j = 1
+ DO i=1,n-1
+ IF( j .EQ. 4 )THEN
+ WRITE(char_tmp,'(A1)') ff
+ data_in(i:i) = char_tmp
+ ELSE
+ WRITE(char_tmp,'(A1)') letters(j)
+ data_in(i:i) = char_tmp
+ ENDIF
+ line_lengths(i) = LEN_TRIM(data_in(i))
+ j = j + 1
+ IF( j .EQ. 5 ) j = 1
+ END DO
+ WRITE(char_tmp,'(A1)') ff
+ data_in(n:n) = char_tmp
+ line_lengths(n) = 1
+
+END SUBROUTINE setup_buffer
+
+!-------------------------------------------------------------------------
+! Function: test_nbit
+!
+! Purpose: Tests (real, 4 byte) datatype for nbit filter
+!
+! Return: Success: 0
+! Failure: >0
+!
+! Programmer: M. Scot Breitenfeld
+! Decemeber 7, 2010
+!
+! Modifications: Moved this subroutine from the 1.8 test file and
+! modified it to use F2003 features.
+! This routine requires 4 byte reals, so we use F2003 features to
+! ensure the requirement is satisfied in a portable way.
+! The need for this arises when a user specifies the default real is 8 bytes.
+! MSB 7/31/12
+!
+!-------------------------------------------------------------------------
+!
+
+SUBROUTINE test_nbit(cleanup, total_error )
+
+ USE HDF5
+ USE ISO_C_BINDING
+
+ IMPLICIT NONE
+ INTEGER, PARAMETER :: wp = SELECTED_REAL_KIND(Fortran_REAL_4) !should map to REAL*4 on most modern processors
+ LOGICAL, INTENT(IN) :: cleanup
+ INTEGER, INTENT(INOUT) :: total_error
+ INTEGER(hid_t) :: file
+
+ INTEGER(hid_t) :: dataset, datatype, space, dc, mem_type_id
+ INTEGER(hsize_t), DIMENSION(1:2) :: dims = (/2,5/)
+ INTEGER(hsize_t), DIMENSION(1:2) :: chunk_dim = (/2,5/)
+ ! orig_data[] are initialized to be within the range that can be represented by
+ ! dataset datatype (no precision loss during datatype conversion)
+ !
+ REAL(kind=wp), DIMENSION(1:2,1:5), TARGET :: orig_data = &
+ RESHAPE( (/188384.00, 19.103516, -1.0831790e9, -84.242188, &
+ 5.2045898, -49140.000, 2350.2500, -3.2110596e-1, 6.4998865e-5, -0.0000000/) , (/2,5/) )
+ REAL(kind=wp), DIMENSION(1:2,1:5), TARGET :: new_data
+ INTEGER(size_t) :: PRECISION, offset
+ INTEGER :: error
+ LOGICAL :: status
+ INTEGER(size_t) :: i, j
+ TYPE(C_PTR) :: f_ptr
+
+ ! check to see if filter is available
+ CALL H5Zfilter_avail_f(H5Z_FILTER_NBIT_F, status, error)
+ IF(.NOT.status)THEN ! We don't have H5Z_FILTER_NBIT_F filter
+ total_error = -1 ! so return
+ RETURN
+ ENDIF
+
+ CALL H5Fcreate_f("nbit.h5", H5F_ACC_TRUNC_F, file, error)
+ CALL check("H5Fcreate_f", error, total_error)
+
+ ! Define dataset datatype (integer), and set precision, offset
+ CALL H5Tcopy_f(H5T_IEEE_F32BE, datatype, error)
+ CALL CHECK(" H5Tcopy_f", error, total_error)
+ CALL H5Tset_fields_f(datatype, 26_size_t, 20_size_t, 6_size_t, 7_size_t, 13_size_t, error)
+ CALL CHECK(" H5Tset_fields_f", error, total_error)
+ offset = 7
+ CALL H5Tset_offset_f(datatype, offset, error)
+ CALL CHECK(" H5Tset_offset_f", error, total_error)
+ PRECISION = 20
+ CALL H5Tset_precision_f(datatype,PRECISION, error)
+ CALL CHECK(" H5Tset_precision_f", error, total_error)
+
+ CALL H5Tset_size_f(datatype, 4_size_t, error)
+ CALL CHECK(" H5Tset_size_f", error, total_error)
+
+ CALL H5Tset_ebias_f(datatype, 31_size_t, error)
+ CALL CHECK(" H5Tset_ebias_f", error, total_error)
+
+ ! Create the data space
+ CALL H5Screate_simple_f(2, dims, space, error)
+ CALL CHECK(" H5Screate_simple_f", error, total_error)
+
+ ! USE nbit filter
+ CALL H5Pcreate_f(H5P_DATASET_CREATE_F, dc, error)
+ CALL CHECK(" H5Pcreate_f", error, total_error)
+
+ CALL H5Pset_chunk_f(dc, 2, chunk_dim, error)
+ CALL CHECK(" H5Pset_chunk_f", error, total_error)
+ CALL H5Pset_nbit_f(dc, error)
+ CALL CHECK(" H5Pset_nbit_f", error, total_error)
+
+ ! Create the dataset
+ CALL H5Dcreate_f(file, "nbit_real", datatype, &
+ space, dataset, error, dc)
+ CALL CHECK(" H5Dcreate_f", error, total_error)
+
+ !----------------------------------------------------------------------
+ ! STEP 1: Test nbit by setting up a chunked dataset and writing
+ ! to it.
+ !----------------------------------------------------------------------
+ !
+ mem_type_id = h5kind_to_type(wp,H5_REAL_KIND)
+
+ f_ptr = C_LOC(orig_data(1,1))
+ CALL H5Dwrite_f(dataset, mem_type_id, f_ptr, error)
+ CALL CHECK(" H5Dwrite_f", error, total_error)
+
+ !----------------------------------------------------------------------
+ ! STEP 2: Try to read the data we just wrote.
+ !----------------------------------------------------------------------
+ !
+ f_ptr = C_LOC(new_data(1,1))
+ CALL H5Dread_f(dataset, mem_type_id, f_ptr, error)
+ CALL CHECK(" H5Dread_f", error, total_error)
+
+ ! Check that the values read are the same as the values written
+ ! Assume size of long long = size of double
+ !
+ i_loop: DO i = 1, dims(1)
+ j_loop: DO j = 1, dims(2)
+ IF(.NOT.(orig_data(i,j).EQ.orig_data(i,j))) CYCLE ! skip IF value is NaN
+ IF(new_data(i,j) .NE. orig_data(i,j))THEN
+ total_error = total_error + 1
+ WRITE(*,'(" Read different values than written.")')
+ WRITE(*,'(" At index ", 2(1X,I0))') i, j
+ EXIT i_loop
+ END IF
+ ENDDO j_loop
+ ENDDO i_loop
+
+ !----------------------------------------------------------------------
+ ! Cleanup
+ !----------------------------------------------------------------------
+ !
+ CALL H5Tclose_f(datatype, error)
+ CALL CHECK(" H5Tclose_f", error, total_error)
+ CALL H5Pclose_f(dc, error)
+ CALL CHECK(" H5Pclose_f", error, total_error)
+ CALL H5Sclose_f(space, error)
+ CALL CHECK(" H5Sclose_f", error, total_error)
+ CALL H5Dclose_f(dataset, error)
+ CALL CHECK(" H5Dclose_f", error, total_error)
+ CALL H5Fclose_f(file, error)
+ CALL CHECK(" H5Fclose_f", error, total_error)
+
+END SUBROUTINE test_nbit
+
diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in
index 3fc3dd9..d381b2a 100644
--- a/fortran/testpar/Makefile.in
+++ b/fortran/testpar/Makefile.in
@@ -209,6 +209,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -223,6 +224,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/fortran/testpar/hyper.f90 b/fortran/testpar/hyper.f90
index 1d65ae1..1a580ca 100644
--- a/fortran/testpar/hyper.f90
+++ b/fortran/testpar/hyper.f90
@@ -50,6 +50,7 @@ SUBROUTINE hyper(length,do_collective,do_chunk, mpi_size, mpi_rank, nerrors)
INTEGER :: icount ! number of elements in array
CHARACTER(len=80) :: filename ! filename
INTEGER :: i
+ INTEGER :: actual_io_mode ! The type of I/O performed by this process
!//////////////////////////////////////////////////////////
! initialize the array data between the processes (3)
@@ -180,6 +181,24 @@ SUBROUTINE hyper(length,do_collective,do_chunk, mpi_size, mpi_rank, nerrors)
CALL check("h5dwrite_f", hdferror, nerrors)
+ ! Check h5pget_mpio_actual_io_mode_f function
+ CALL h5pget_mpio_actual_io_mode_f(dxpl_id, actual_io_mode, hdferror)
+ CALL check("h5pget_mpio_actual_io_mode_f", hdferror, nerrors)
+
+ IF(do_collective.AND.do_chunk)THEN
+ IF(actual_io_mode.NE.H5D_MPIO_CHUNK_COLLECTIVE_F)THEN
+ CALL check("h5pget_mpio_actual_io_mode_f", -1, nerrors)
+ ENDIF
+ ELSEIF(.NOT.do_collective)THEN
+ IF(actual_io_mode.NE.H5D_MPIO_NO_COLLECTIVE_F)THEN
+ CALL check("h5pget_mpio_actual_io_mode_f", -1, nerrors)
+ ENDIF
+ ELSEIF( do_collective.AND.(.NOT.do_chunk))THEN
+ IF(actual_io_mode.NE.H5D_MPIO_CONTIG_COLLECTIVE_F)THEN
+ CALL check("h5pget_mpio_actual_io_mode_f", -1, nerrors)
+ ENDIF
+ ENDIF
+
!//////////////////////////////////////////////////////////
! close HDF5 I/O
!//////////////////////////////////////////////////////////
diff --git a/hl/Makefile.in b/hl/Makefile.in
index 162f80c..7eddea8 100644
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -214,6 +214,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -228,6 +229,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index 0a8677c..9e64681 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -210,6 +210,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -224,6 +225,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index cbc0e90..a6504a7 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -176,6 +176,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -190,6 +191,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index 83c7d68..ddef71c 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -240,6 +240,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -254,6 +255,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -450,7 +452,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
# Include src directory
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index cba6959..96264af 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -206,6 +206,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -220,6 +221,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 3435edb..b434852 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -176,6 +176,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -190,6 +191,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index fa03794..d3e02eb 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -214,6 +214,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -228,6 +229,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 622868c..7aec62b 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -177,6 +177,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -191,6 +192,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index d38c0ae..706ab12 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -254,6 +254,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -268,6 +269,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -464,7 +466,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/hl/src -I$(top_builddir)/hl/src \
-I$(top_srcdir)/fortran/src -I$(top_builddir)/fortran/src
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 4039fe1..021b5bf 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -220,6 +220,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -234,6 +235,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index c2ccd69..d7be223 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -239,6 +239,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -253,6 +254,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -449,7 +451,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
# This library is our main target.
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index 611863f..ca0b40c 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -242,6 +242,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -256,6 +257,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/test/test_image.c b/hl/test/test_image.c
index 4cef1b4..a4a10e4 100644
--- a/hl/test/test_image.c
+++ b/hl/test/test_image.c
@@ -676,7 +676,7 @@ static int test_generate(void)
goto out;
/* Indicate success */
- retval = 0;
+ return 0;
/* error zone, gracefully close */
out:
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index 2f35748..79bd635 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -211,6 +211,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -225,6 +226,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index a64180b..3b0124d 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -222,6 +222,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -236,6 +237,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/perform/Makefile.am b/perform/Makefile.am
index 5d0e11d..988ec63 100644
--- a/perform/Makefile.am
+++ b/perform/Makefile.am
@@ -37,8 +37,9 @@ h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Some programs are not built or run by default, but can be built by hand or by
# specifying --enable-build-all at configure time.
# Also, some of these programs should only be built in parallel.
+# Currently there is no such program.
if BUILD_PARALLEL_CONDITIONAL
- PARA_BUILD_ALL=benchpar
+ PARA_BUILD_ALL=
endif
if BUILD_ALL_CONDITIONAL
BUILD_ALL_PROGS=$(PARA_BUILD_ALL)
diff --git a/perform/Makefile.in b/perform/Makefile.in
index 31d30ec..42dda1c 100644
--- a/perform/Makefile.in
+++ b/perform/Makefile.in
@@ -91,20 +91,17 @@ CONFIG_HEADER = $(top_builddir)/src/H5config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
-@BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = benchpar$(EXEEXT)
+am__EXEEXT_1 =
@BUILD_ALL_CONDITIONAL_TRUE@am__EXEEXT_2 = $(am__EXEEXT_1)
PROGRAMS = $(bin_PROGRAMS)
-benchpar_SOURCES = benchpar.c
-benchpar_OBJECTS = benchpar.$(OBJEXT)
-benchpar_LDADD = $(LDADD)
-benchpar_DEPENDENCIES = $(LIBHDF5)
-AM_V_lt = $(am__v_lt_@AM_V@)
-am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
-am__v_lt_0 = --silent
chunk_SOURCES = chunk.c
chunk_OBJECTS = chunk.$(OBJEXT)
chunk_LDADD = $(LDADD)
chunk_DEPENDENCIES = $(LIBHDF5)
+AM_V_lt = $(am__v_lt_@AM_V@)
+am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
+am__v_lt_0 = --silent
+am__v_lt_1 =
am_h5perf_OBJECTS = pio_perf.$(OBJEXT) pio_engine.$(OBJEXT) \
pio_timer.$(OBJEXT)
h5perf_OBJECTS = $(am_h5perf_OBJECTS)
@@ -161,12 +158,10 @@ am__v_CCLD_0 = @echo " CCLD " $@;
AM_V_GEN = $(am__v_GEN_@AM_V@)
am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
am__v_GEN_0 = @echo " GEN " $@;
-SOURCES = benchpar.c chunk.c $(h5perf_SOURCES) \
- $(h5perf_serial_SOURCES) iopipe.c overhead.c perf.c \
- perf_meta.c zip_perf.c
-DIST_SOURCES = benchpar.c chunk.c $(h5perf_SOURCES) \
- $(h5perf_serial_SOURCES) iopipe.c overhead.c perf.c \
- perf_meta.c zip_perf.c
+SOURCES = chunk.c $(h5perf_SOURCES) $(h5perf_serial_SOURCES) iopipe.c \
+ overhead.c perf.c perf_meta.c zip_perf.c
+DIST_SOURCES = chunk.c $(h5perf_SOURCES) $(h5perf_serial_SOURCES) \
+ iopipe.c overhead.c perf.c perf_meta.c zip_perf.c
am__can_run_installinfo = \
case $$AM_UPDATE_INFO_DIR in \
n|no|NO) false;; \
@@ -254,6 +249,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -268,6 +264,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -469,7 +466,8 @@ h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Some programs are not built or run by default, but can be built by hand or by
# specifying --enable-build-all at configure time.
# Also, some of these programs should only be built in parallel.
-@BUILD_PARALLEL_CONDITIONAL_TRUE@PARA_BUILD_ALL = benchpar
+# Currently there is no such program.
+@BUILD_PARALLEL_CONDITIONAL_TRUE@PARA_BUILD_ALL =
@BUILD_ALL_CONDITIONAL_TRUE@BUILD_ALL_PROGS = $(PARA_BUILD_ALL)
# Define programs that will be run in 'make check'
@@ -604,9 +602,6 @@ clean-checkPROGRAMS:
list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
echo " rm -f" $$list; \
rm -f $$list
-benchpar$(EXEEXT): $(benchpar_OBJECTS) $(benchpar_DEPENDENCIES) $(EXTRA_benchpar_DEPENDENCIES)
- @rm -f benchpar$(EXEEXT)
- $(AM_V_CCLD)$(LINK) $(benchpar_OBJECTS) $(benchpar_LDADD) $(LIBS)
chunk$(EXEEXT): $(chunk_OBJECTS) $(chunk_DEPENDENCIES) $(EXTRA_chunk_DEPENDENCIES)
@rm -f chunk$(EXEEXT)
$(AM_V_CCLD)$(LINK) $(chunk_OBJECTS) $(chunk_LDADD) $(LIBS)
@@ -638,7 +633,6 @@ mostlyclean-compile:
distclean-compile:
-rm -f *.tab.c
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/benchpar.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/chunk.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/iopipe.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/overhead.Po@am__quote@
diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt
index d3459f5..8c1c8b0 100644
--- a/release_docs/RELEASE.txt
+++ b/release_docs/RELEASE.txt
@@ -1,4 +1,4 @@
-HDF5 version 1.9.131 currently under development
+HDF5 version 1.9.132 currently under development
================================================================================
@@ -39,6 +39,9 @@ New Features
Configuration:
-------------
+ - Fixed AIX Fortran compiler flags to use appropriate settings for
+ debugging, profiling, optimization situations. HDFFV-8069. (AKC
+ 2012/09/27)
- Updated to latest autotools and changed all hard *.sh scripts to
configure managed *.sh.in files. Removed overloading of autotools
TESTS variable by examples and tests. Renamed configure.in to
@@ -698,6 +701,9 @@ Bug Fixes since HDF5-1.8.0 release
Performance
-------------
+ - Removed program perform/benchpar from the enable-build-all list. The
+ program will be retired or moved to another location. HDFFV-8156
+ (AKC 2012/10/01)
- Retired program perform/mpi-perf. Its purpose has been incorporated
into h5perf before. (AKC 2012/09/20)
- ifdefs added to tests around include unistd.h and function to simulate
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 9df014c..876711a 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -458,6 +458,7 @@ SET (H5P_SRCS
${HDF5_SRC_DIR}/H5Pdcpl.c
${HDF5_SRC_DIR}/H5Pdeprec.c
${HDF5_SRC_DIR}/H5Pdxpl.c
+ ${HDF5_SRC_DIR}/H5Pencdec.c
${HDF5_SRC_DIR}/H5Pfapl.c
${HDF5_SRC_DIR}/H5Pfcpl.c
${HDF5_SRC_DIR}/H5Pfmpl.c
diff --git a/src/H5public.h b/src/H5public.h
index 7e17461..88e514d 100644
--- a/src/H5public.h
+++ b/src/H5public.h
@@ -75,10 +75,10 @@ extern "C" {
/* Version numbers */
#define H5_VERS_MAJOR 1 /* For major interface/format changes */
#define H5_VERS_MINOR 9 /* For minor interface/format changes */
-#define H5_VERS_RELEASE 131 /* For tweaks, bug-fixes, or development */
+#define H5_VERS_RELEASE 132 /* For tweaks, bug-fixes, or development */
#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */
/* Empty string for real releases. */
-#define H5_VERS_INFO "HDF5 library version: 1.9.131" /* Full version string */
+#define H5_VERS_INFO "HDF5 library version: 1.9.132" /* Full version string */
#define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \
H5_VERS_RELEASE)
diff --git a/src/Makefile.in b/src/Makefile.in
index 19c6404..c3b2e88 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -304,6 +304,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -318,6 +319,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
@@ -514,7 +516,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog
# Add libtool shared library version numbers to the HDF5 library
# See libtool versioning documentation online.
LT_VERS_INTERFACE = 6
-LT_VERS_REVISION = 121
+LT_VERS_REVISION = 122
LT_VERS_AGE = 0
H5detect_CFLAGS = -g $(AM_CFLAGS)
diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt
index 8e63326..5551fa3 100644
--- a/test/CMakeLists.txt
+++ b/test/CMakeLists.txt
@@ -78,6 +78,47 @@ FOREACH (ref_file ${HDF5_REFERENCE_FILES})
ENDFOREACH (ref_file ${HDF5_REFERENCE_FILES})
# --------------------------------------------------------------------
+# Copy test files from test/testfiles/plist_files dir to test dir
+# --------------------------------------------------------------------
+SET (HDF5_REFERENCE_PLIST_FILES
+ acpl_be
+ acpl_le
+ dapl_be
+ dapl_le
+ dcpl_be
+ dcpl_le
+ dxpl_be
+ dxpl_le
+ fapl_be
+ fapl_le
+ fcpl_be
+ fcpl_le
+ gcpl_be
+ gcpl_le
+ lapl_be
+ lapl_le
+ lcpl_be
+ lcpl_le
+ ocpl_be
+ ocpl_le
+ ocpypl_be
+ ocpypl_le
+ strcpl_be
+ strcpl_le
+)
+
+FOREACH (plistfile ${HDF5_REFERENCE_PLIST_FILES})
+ SET (dest "${PROJECT_BINARY_DIR}/${plistfile}")
+ #MESSAGE (STATUS " Copying ${plistfile} to ${dset}")
+ ADD_CUSTOM_COMMAND (
+ TARGET ${HDF5_TEST_LIB_TARGET}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND}
+ ARGS -E copy_if_different ${HDF5_TEST_SOURCE_DIR}/testfiles/plist_files/${plistfile} ${dest}
+ )
+ENDFOREACH (plistfile ${HDF5_REFERENCE_PLIST_FILES})
+
+# --------------------------------------------------------------------
#-- Copy all the HDF5 files from the test directory into the source directory
# --------------------------------------------------------------------
SET (HDF5_REFERENCE_TEST_FILES
@@ -314,6 +355,8 @@ SET (H5_TESTS
testmeta
#links_env
file_image
+ enc_dec_plist
+ enc_dec_plist_with_endianess
)
FOREACH (test ${H5_TESTS})
@@ -638,6 +681,7 @@ IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS)
gen_specmetaread
gen_sizes_lheap
gen_file_image
+ gen_plist
)
FOREACH (gen ${H5_GENERATORS})
diff --git a/test/Makefile.in b/test/Makefile.in
index 6632526..5314d2e 100644
--- a/test/Makefile.in
+++ b/test/Makefile.in
@@ -573,6 +573,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -587,6 +588,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt
index 5d594a6..88c47f5 100644
--- a/testpar/CMakeLists.txt
+++ b/testpar/CMakeLists.txt
@@ -23,6 +23,7 @@ SET (testphdf5_SRCS
${HDF5_TEST_PAR_SOURCE_DIR}/t_span_tree.c
${HDF5_TEST_PAR_SOURCE_DIR}/t_chunk_alloc.c
${HDF5_TEST_PAR_SOURCE_DIR}/t_filter_read.c
+ ${HDF5_TEST_PAR_SOURCE_DIR}/t_prop.c
)
#-- Adding test for testhdf5
diff --git a/testpar/Makefile.in b/testpar/Makefile.in
index 4b5ca13..8bb57e2 100644
--- a/testpar/Makefile.in
+++ b/testpar/Makefile.in
@@ -235,6 +235,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -249,6 +250,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 646b46a..13ea995 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -211,6 +211,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -225,6 +226,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
index 1c1a58c..4c985f6 100644
--- a/tools/h5copy/Makefile.in
+++ b/tools/h5copy/Makefile.in
@@ -214,6 +214,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -228,6 +229,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index 93494dc..a208d15 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -221,6 +221,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -235,6 +236,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index dc60048..8766eb6 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -1088,13 +1088,15 @@ IF (BUILD_TESTING)
# test for compound signed/unsigned datasets
ADD_H5_TEST (tcmpdintsize 0 --enable-error-stack tcmpdintsize.h5)
# test for signed/unsigned scalar datasets
- ADD_H5_TEST (tscalarintsize 0 --enable-error-stack tscalarintsize.h5)
+ # TODO: failed on mac with intel compiler. (Allen will work on it)
+ #ADD_H5_TEST (tscalarintsize 0 --enable-error-stack tscalarintsize.h5)
# test for signed/unsigned attributes
ADD_H5_TEST (tattrintsize 0 --enable-error-stack tattrintsize.h5)
# test for compound signed/unsigned attributes
ADD_H5_TEST (tcmpdattrintsize 0 --enable-error-stack tcmpdattrintsize.h5)
# test for signed/unsigned scalar attributes
- ADD_H5_TEST (tscalarattrintsize 0 --enable-error-stack tscalarattrintsize.h5)
+ # TODO: failed on mac with intel compiler. (Allen will work on it)
+ #ADD_H5_TEST (tscalarattrintsize 0 --enable-error-stack tscalarattrintsize.h5)
# test for displaying groups
ADD_H5_TEST (tgroup-1 0 --enable-error-stack tgroup.h5)
# test for displaying the selected groups
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index 883337a..65d0466 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -220,6 +220,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -234,6 +235,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index c90c364..f1eaf0c 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -683,13 +683,15 @@ TOOLTEST packedbits.ddl --enable-error-stack packedbits.h5
# test for compound signed/unsigned datasets
TOOLTEST tcmpdintsize.ddl --enable-error-stack tcmpdintsize.h5
# test for signed/unsigned scalar datasets
-TOOLTEST tscalarintsize.ddl --enable-error-stack tscalarintsize.h5
+# TODO: failed on mac with intel compiler. (Allen will work on it)
+#TOOLTEST tscalarintsize.ddl --enable-error-stack tscalarintsize.h5
# test for signed/unsigned attributes
TOOLTEST tattrintsize.ddl --enable-error-stack tattrintsize.h5
# test for compound signed/unsigned attributes
TOOLTEST tcmpdattrintsize.ddl --enable-error-stack tcmpdattrintsize.h5
# test for signed/unsigned scalar attributes
-TOOLTEST tscalarattrintsize.ddl --enable-error-stack tscalarattrintsize.h5
+# TODO: failed on mac with intel compiler. (Allen will work on it)
+#TOOLTEST tscalarattrintsize.ddl --enable-error-stack tscalarattrintsize.h5
# test for displaying groups
TOOLTEST tgroup-1.ddl --enable-error-stack tgroup.h5
# test for displaying the selected groups
diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in
index b3217d2..542bc33 100644
--- a/tools/h5import/Makefile.in
+++ b/tools/h5import/Makefile.in
@@ -214,6 +214,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -228,6 +229,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index 96b4190..4bdb6d5 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -228,6 +228,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -242,6 +243,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index 3611a59..986ba65 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -208,6 +208,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -222,6 +223,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index 2892649..0d00a3e 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -228,6 +228,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -242,6 +243,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in
index 6473b69..43c19f6 100644
--- a/tools/h5stat/Makefile.in
+++ b/tools/h5stat/Makefile.in
@@ -243,6 +243,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -257,6 +258,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
index caad7ee..936311f 100644
--- a/tools/lib/Makefile.in
+++ b/tools/lib/Makefile.in
@@ -206,6 +206,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -220,6 +221,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 961c943..2aeafbe 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -268,6 +268,7 @@ FILTERS = @FILTERS@
FSEARCH_DIRS = @FSEARCH_DIRS@
GPFS = @GPFS@
GREP = @GREP@
+H5BLD_STATIC = @H5BLD_STATIC@
H5_CFLAGS = @H5_CFLAGS@
H5_CPPFLAGS = @H5_CPPFLAGS@
H5_CXXFLAGS = @H5_CXXFLAGS@
@@ -282,6 +283,7 @@ HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
+HDF5_USE_SHLIB = @HDF5_USE_SHLIB@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_FORTRAN2003 = @HDF_FORTRAN2003@
diff --git a/tools/misc/h5cc.in b/tools/misc/h5cc.in
index 233c80a..d05b920 100644
--- a/tools/misc/h5cc.in
+++ b/tools/misc/h5cc.in
@@ -102,6 +102,10 @@ CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
LIBS="${HDF5_LIBS:-$LIBSBASE}"
+# If static was disabled, @HDF5_USE_SHLIB@ will be yes. In that case
+# HDF5_USE_SHLIB should be set to yes because there are no static
+# lib files.
+HDF5_USE_SHLIB="@HDF5_USE_SHLIB@"
USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
usage() {
diff --git a/vms/src/h5pubconf.h b/vms/src/h5pubconf.h
index 8e41032..0891765 100644
--- a/vms/src/h5pubconf.h
+++ b/vms/src/h5pubconf.h
@@ -505,7 +505,7 @@
#define H5_PACKAGE_NAME "HDF5"
/* Define to the full name and version of this package. */
-#define H5_PACKAGE_STRING "HDF5 1.9.131"
+#define H5_PACKAGE_STRING "HDF5 1.9.132"
/* Define to the one symbol short name of this package. */
#define H5_PACKAGE_TARNAME "hdf5"
@@ -514,7 +514,7 @@
#define H5_PACKAGE_URL ""
/* Define to the version of this package. */
-#define H5_PACKAGE_VERSION "1.9.131"
+#define H5_PACKAGE_VERSION "1.9.132"
/* Width for printf() for type `long long' or `__int64', use `ll' */
#define H5_PRINTF_LL_WIDTH "ll"
@@ -677,7 +677,7 @@
/* #undef H5_USING_MEMCHECKER */
/* Version number of package */
-#define H5_VERSION "1.9.131"
+#define H5_VERSION "1.9.132"
/* Define if vsnprintf() returns the correct value for formatted strings that
don't fit into size allowed */
diff --git a/windows/src/H5pubconf.h b/windows/src/H5pubconf.h
index 5beaea6..76e37d0 100644
--- a/windows/src/H5pubconf.h
+++ b/windows/src/H5pubconf.h
@@ -530,7 +530,7 @@
#define H5_PACKAGE_NAME "HDF5"
/* Define to the full name and version of this package. */
-#define H5_PACKAGE_STRING "HDF5 1.9.131"
+#define H5_PACKAGE_STRING "HDF5 1.9.132"
/* Define to the one symbol short name of this package. */
#define H5_PACKAGE_TARNAME "hdf5"
@@ -539,7 +539,7 @@
#define H5_PACKAGE_URL ""
/* Define to the version of this package. */
-#define H5_PACKAGE_VERSION "1.9.131"
+#define H5_PACKAGE_VERSION "1.9.132"
/* Width for printf() for type `long long' or `__int64', use `ll' */
#define H5_PRINTF_LL_WIDTH "I64"
@@ -710,7 +710,7 @@
/* #undef H5_USING_MEMCHECKER */
/* Version number of package */
-#define H5_VERSION "1.9.131"
+#define H5_VERSION "1.9.132"
/* Define if vsnprintf() returns the correct value for formatted strings that
don't fit into size allowed */