[svn-r13582]

Bug fix

Substitute a malloc call for a calloc call while allocating a reference buffer
Add a test for an empty reference case
Tested linux

3 files changed, 13 insertions, 16 deletions

diff --git a/tools/h5repack/h5repack_refs.c b/tools/h5repack/h5repack_refs.c
index f5e74c2..3b272c8 100644
--- a/tools/h5repack/h5repack_refs.c
+++ b/tools/h5repack/h5repack_refs.c
@@ -63,7 +63,6 @@ int do_copy_refobjs(hid_t fidin,
  hsize_t   nelmts;                 /* number of elements in dataset */
  int       rank;                   /* rank of dataset */
  hsize_t   dims[H5S_MAX_RANK];     /* dimensions of dataset */
- int       next;                   /* external files */
  unsigned int i, j;
  int       k;
 
@@ -149,13 +148,6 @@ int do_copy_refobjs(hid_t fidin,
 
    if ((msize=H5Tget_size(mtype_id))==0)
     goto error;
-
-/*-------------------------------------------------------------------------
- * check for external files
- *-------------------------------------------------------------------------
- */
-   if ((next=H5Pget_external_count (dcpl_id))<0)
-    goto error;
 /*-------------------------------------------------------------------------
  * check if the dataset creation property list has filters that
  * are not registered in the current configuration
@@ -163,7 +155,7 @@ int do_copy_refobjs(hid_t fidin,
  * 2) the internal filters might be turned off
  *-------------------------------------------------------------------------
  */
-   if (next==0 && h5tools_canreadf((NULL),dcpl_id)==1)
+   if (h5tools_canreadf((NULL),dcpl_id)==1)
    {
 /*-------------------------------------------------------------------------
  * test for a valid output dataset
@@ -202,7 +194,7 @@ int do_copy_refobjs(hid_t fidin,
 
      if ((obj_type = H5Rget_obj_type(dset_in,H5R_OBJECT,buf))<0)
       goto error;
-     refbuf=HDmalloc((unsigned)nelmts*msize);
+     refbuf=HDcalloc((unsigned)nelmts,msize);
      if ( refbuf==NULL){
       printf( "cannot allocate memory\n" );
       goto error;
@@ -544,6 +536,7 @@ static int copy_refs_attr(hid_t loc_in,
   if ((msize=H5Tget_size(mtype_id))==0)
    goto error;
 
+  
 /*-------------------------------------------------------------------------
  * object references are a special case
  * we cannot just copy the buffers, but instead we recreate the reference
@@ -575,7 +568,7 @@ static int copy_refs_attr(hid_t loc_in,
 
      if ((obj_type = H5Rget_obj_type(attr_id,H5R_OBJECT,buf))<0)
       goto error;
-     refbuf=HDmalloc((unsigned)nelmts*msize);
+     refbuf=HDcalloc((unsigned)nelmts,msize);
      if ( refbuf==NULL){
       printf( "cannot allocate memory\n" );
       goto error;
@@ -607,14 +600,15 @@ static int copy_refs_attr(hid_t loc_in,
 
     if ((attr_out=H5Acreate(loc_out,name,ftype_id,space_id,H5P_DEFAULT))<0)
      goto error;
-    if (nelmts) {
+    if (nelmts) 
+    {
      if(H5Awrite(attr_out,mtype_id,refbuf)<0)
       goto error;
     }
-
     if (H5Aclose(attr_out)<0)
      goto error;
 
+
     if (refbuf)
      free(refbuf);
     if (buf)
@@ -824,4 +818,3 @@ static const char* MapIdToName(hid_t refobj_id,
 }
 
 
-
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index 19b4103..81c0e3c 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -168,6 +168,7 @@ int main (void)
  * file with fill values
  *-------------------------------------------------------------------------
  */
+
  TESTING("    copy of datasets (fill values)");
  if (h5repack_init (&pack_options, 0)<0)
   GOERROR;
@@ -183,6 +184,7 @@ int main (void)
   GOERROR;
  PASSED();
 
+
 /*-------------------------------------------------------------------------
  * file with all kinds of dataset datatypes
  *-------------------------------------------------------------------------
@@ -2787,11 +2789,11 @@ void write_dset_in(hid_t loc_id,
 
  /* create 1D attributes with dimension [2], 2 elements */
  hsize_t    dims[1]={2};
- hsize_t    dims1r[1]={1};
+ hsize_t    dims1r[1]={2};
  char       buf1[2][2]= {"ab","de"};        /* string */
  char       buf2[2]= {1,2};                 /* bitfield, opaque */
  s_t        buf3[2]= {{1,2},{3,4}};         /* compound */
- hobj_ref_t buf4[1];                        /* reference */
+ hobj_ref_t buf4[2];                        /* reference */
  e_t        buf45[2]= {RED,GREEN};          /* enum */
  hvl_t      buf5[2];                        /* vlen */
  hsize_t    dimarray[1]={3};                /* array dimension */
@@ -2914,6 +2916,8 @@ void write_dset_in(hid_t loc_id,
  *-------------------------------------------------------------------------
  */
  /* object references ( H5R_OBJECT ) */
+ buf4[0]=0;
+ buf4[1]=0;
  if (dset_name)
  {
   status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1);
diff --git a/tools/testfiles/h5repack_objs.h5 b/tools/testfiles/h5repack_objs.h5
index edd3a5c..199adc5 100644
--- a/tools/testfiles/h5repack_objs.h5
+++ b/tools/testfiles/h5repack_objs.h5