diff options
| author | Mohamad Chaarawi <chaarawi@hdfgroup.org> | 2014-07-14 17:02:00 (GMT) |
|---|---|---|
| committer | Mohamad Chaarawi <chaarawi@hdfgroup.org> | 2014-07-14 17:02:00 (GMT) |
| commit | 1b3cbe93ef7d14d7cdfe2141a61f0a98be79c7f5 (patch) | |
| tree | 698fce999430e2d0a28d07c1e2d35f49891e721c | |
| parent | 8848bd4dca172d4d901e795a65bc022dcd7f8464 (diff) | |
| parent | 186aca8b49d5d9e80158ca5fcf59bfb4daf28c1e (diff) | |
| download | hdf5-1b3cbe93ef7d14d7cdfe2141a61f0a98be79c7f5.zip hdf5-1b3cbe93ef7d14d7cdfe2141a61f0a98be79c7f5.tar.gz hdf5-1b3cbe93ef7d14d7cdfe2141a61f0a98be79c7f5.tar.bz2 | |
[svn-r25414] merge from trunk.
59 files changed, 172 insertions, 277 deletions
diff --git a/CMakeLists.txt b/CMakeLists.txt index dd0ae5d..9ee21de 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -643,8 +643,6 @@ if (HDF5_ENABLE_PARALLEL) # MPI checks, only do these if MPI_C_FOUND is true, otherwise they always fail # and once set, they are cached as false and not regenerated set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}" ) - CHECK_FUNCTION_EXISTS (MPI_File_get_size H5_HAVE_MPI_GET_SIZE) - set (H5_MPI_FILE_SET_SIZE_BIG 1) # Used by Fortran + MPI CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_PATH}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm) CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_PATH}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Info) diff --git a/Makefile.in b/Makefile.in index d254df5..05e2d73 100644 --- a/Makefile.in +++ b/Makefile.in @@ -344,7 +344,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -1,4 +1,4 @@ -HDF5 version 1.9.187 currently under development +HDF5 version 1.9.189 currently under development Please refer to the release_docs/INSTALL file for installation instructions. ------------------------------------------------------------------------------ diff --git a/c++/Makefile.in b/c++/Makefile.in index c56cfc4..de87fa5 100644 --- a/c++/Makefile.in +++ b/c++/Makefile.in @@ -504,7 +504,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in index 273ab52..3403db4 100644 --- a/c++/examples/Makefile.in +++ b/c++/examples/Makefile.in @@ -452,7 +452,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/c++/src/Makefile.in b/c++/src/Makefile.in index 75c5ea7..3776dc6 100644 --- a/c++/src/Makefile.in +++ b/c++/src/Makefile.in @@ -518,7 +518,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -682,7 +681,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 # This is our main target diff --git a/c++/test/Makefile.in b/c++/test/Makefile.in index 621618e..49c08e4 100644 --- a/c++/test/Makefile.in +++ b/c++/test/Makefile.in @@ -509,7 +509,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/config/cmake/H5pubconf.h.in b/config/cmake/H5pubconf.h.in index 70dc206..ec4c47f 100644 --- a/config/cmake/H5pubconf.h.in +++ b/config/cmake/H5pubconf.h.in @@ -98,6 +98,9 @@ /* Define to 1 if you have the `alarm' function. */ #cmakedefine H5_HAVE_ALARM @H5_HAVE_ALARM@ +/* Define to 1 if you have the `asprintf' function. */ +#cmakedefine H5_HAVE_ASPRINTF @H5_HAVE_ASPRINTF@ + /* Define if the __attribute__(()) extension is present */ #cmakedefine H5_HAVE_ATTRIBUTE @H5_HAVE_ATTRIBUTE@ @@ -296,9 +299,6 @@ /* Define to 1 if you have the <mpe.h> header file. */ #cmakedefine H5_HAVE_MPE_H @H5_HAVE_MPE_H@ -/* Define if MPI_File_get_size works correctly */ -#cmakedefine H5_HAVE_MPI_GET_SIZE @H5_HAVE_MPI_GET_SIZE@ - /* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */ #cmakedefine H5_HAVE_MPI_MULTI_LANG_Comm @H5_HAVE_MPI_MULTI_LANG_Comm@ @@ -320,7 +320,7 @@ /* Define to 1 if you have the `rand_r' function. */ #cmakedefine H5_HAVE_RAND_R @H5_HAVE_RAND_R@ -/* Define to 1 if you have the `sigsetjmp' function. */ +/* Define to 1 if you have the `setjmp' function. */ #cmakedefine H5_HAVE_SETJMP @H5_HAVE_SETJMP@ /* Define to 1 if you have the <setjmp.h> header file. */ @@ -537,10 +537,6 @@ /* Define if the metadata trace file code is to be compiled in */ #cmakedefine H5_METADATA_TRACE_FILE @H5_METADATA_TRACE_FILE@ -/* Define if your system's `MPI_File_set_size' function works for files over - 2GB. */ -#cmakedefine H5_MPI_FILE_SET_SIZE_BIG @H5_MPI_FILE_SET_SIZE_BIG@ - /* Define if we can violate pointer alignment restrictions */ #cmakedefine H5_NO_ALIGNMENT_RESTRICTIONS @H5_NO_ALIGNMENT_RESTRICTIONS@ diff --git a/config/lt_vers.am b/config/lt_vers.am index 5dbecd5..9e785fb 100644 --- a/config/lt_vers.am +++ b/config/lt_vers.am @@ -17,7 +17,7 @@ # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 ## If the API changes *at all*, increment LT_VERS_INTERFACE and @@ -1,7 +1,7 @@ #! /bin/sh # From configure.ac Id: configure.ac 22697 2012-08-19 14:35:47Z hdftest . # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for HDF5 1.9.187. +# Generated by GNU Autoconf 2.69 for HDF5 1.9.189. # # Report bugs to <help@hdfgroup.org>. # @@ -591,8 +591,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='HDF5' PACKAGE_TARNAME='hdf5' -PACKAGE_VERSION='1.9.187' -PACKAGE_STRING='HDF5 1.9.187' +PACKAGE_VERSION='1.9.189' +PACKAGE_STRING='HDF5 1.9.189' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_URL='' @@ -675,7 +675,6 @@ USE_FILTER_NBIT USE_FILTER_FLETCHER32 USE_FILTER_SHUFFLE FILTERS -MPI_GET_SIZE ADD_PARALLEL_FILES USINGMEMCHECKER CLEARFILEBUF @@ -922,7 +921,6 @@ enable_clear_file_buffers enable_using_memchecker enable_parallel with_mpe -enable_mpi_size enable_filters with_default_vfd enable_direct_vfd @@ -1491,7 +1489,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures HDF5 1.9.187 to adapt to many kinds of systems. +\`configure' configures HDF5 1.9.189 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1561,7 +1559,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of HDF5 1.9.187:";; + short | recursive ) echo "Configuration of HDF5 1.9.189:";; esac cat <<\_ACEOF @@ -1618,11 +1616,6 @@ Optional Features: picky about it's memory operations and also disables the library's free space manager code. Default=no. --enable-parallel Search for MPI-IO and MPI support files - --enable-mpi-size Some systems (only SGI Altix Propack 4 so far) - return wrong value from MPI_File_get_size. By - disabling this function, the library will replace it - with stat to get the correct file size. - [default=yes] --enable-filters=all Turn on all internal I/O filters. One may also specify a comma-separated list of filters or the word no. The default is all internal I/O filters. @@ -1759,7 +1752,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -HDF5 configure 1.9.187 +HDF5 configure 1.9.189 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -2853,7 +2846,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by HDF5 $as_me 1.9.187, which was +It was created by HDF5 $as_me 1.9.189, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -3724,7 +3717,7 @@ fi # Define the identity of the package. PACKAGE='hdf5' - VERSION='1.9.187' + VERSION='1.9.189' cat >>confdefs.h <<_ACEOF @@ -29233,65 +29226,6 @@ fi $as_echo "#define HAVE_MPE 1" >>confdefs.h fi - - ## ---------------------------------------------------------------------- - ## Set the flag to indicate that the MPI_File_set_size() function - ## works with files over 2GB, unless it's already set in the cache. - ## (This flag should be set for all machines, except for ASCI Red, where - ## the cache value is set in it's config file) - ## - { $as_echo "$as_me:${as_lineno-$LINENO}: checking if MPI_File_set_size works for files over 2GB" >&5 -$as_echo_n "checking if MPI_File_set_size works for files over 2GB... " >&6; } - if ${hdf5_cv_mpi_file_set_size_big+:} false; then : - $as_echo_n "(cached) " >&6 -else - hdf5_cv_mpi_file_set_size_big=yes -fi - - - if test ${hdf5_cv_mpi_file_set_size_big} = "yes"; then - -$as_echo "#define MPI_FILE_SET_SIZE_BIG 1" >>confdefs.h - - { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 -$as_echo "yes" >&6; } - else - { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 -$as_echo "no" >&6; } - fi - - ## ---------------------------------------------------------------------- - ## Set the flag to indicate that the MPI_File_get_size() function - ## works. The default is enabled unless the user knows the function - ## doesn't work on the system and disables it. (This flag should be set - ## for all machines except for SGI Altix Propack 4 where the function - ## doesn't return correct file size.) - ## - # Check whether --enable-mpi-size was given. -if test "${enable_mpi_size+set}" = set; then : - enableval=$enable_mpi_size; MPI_GET_SIZE=$enableval -fi - - - { $as_echo "$as_me:${as_lineno-$LINENO}: checking if MPI_File_get_size is enabled" >&5 -$as_echo_n "checking if MPI_File_get_size is enabled... " >&6; } - - - case "X-$MPI_GET_SIZE" in - X-no) - { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 -$as_echo "no" >&6; } - MPI_GET_SIZE=no - ;; - X-yes|*) - { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 -$as_echo "yes" >&6; } - MPI_GET_SIZE=yes - -$as_echo "#define HAVE_MPI_GET_SIZE 1" >>confdefs.h - - ;; - esac fi ## ---------------------------------------------------------------------- @@ -31789,7 +31723,7 @@ Usage: $0 [OPTIONS] Report bugs to <bug-libtool@gnu.org>." lt_cl_version="\ -HDF5 config.lt 1.9.187 +HDF5 config.lt 1.9.189 configured by $0, generated by GNU Autoconf 2.69. Copyright (C) 2011 Free Software Foundation, Inc. @@ -33931,7 +33865,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by HDF5 $as_me 1.9.187, which was +This file was extended by HDF5 $as_me 1.9.189, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -33997,7 +33931,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -HDF5 config.status 1.9.187 +HDF5 config.status 1.9.189 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" diff --git a/configure.ac b/configure.ac index e1631c7..06cbffc 100644 --- a/configure.ac +++ b/configure.ac @@ -26,7 +26,7 @@ AC_PREREQ([2.69]) ## NOTE: Do not forget to change the version number here when we do a ## release!!! ## -AC_INIT([HDF5], [1.9.187], [help@hdfgroup.org]) +AC_INIT([HDF5], [1.9.189], [help@hdfgroup.org]) AC_CONFIG_SRCDIR([src/H5.c]) AC_CONFIG_HEADER([src/H5config.h]) @@ -2895,54 +2895,6 @@ if test -n "$PARALLEL"; then if test "X-$MPE" = "X-yes"; then AC_DEFINE([HAVE_MPE], [1], [Define if we have MPE support]) fi - - ## ---------------------------------------------------------------------- - ## Set the flag to indicate that the MPI_File_set_size() function - ## works with files over 2GB, unless it's already set in the cache. - ## (This flag should be set for all machines, except for ASCI Red, where - ## the cache value is set in it's config file) - ## - AC_MSG_CHECKING([if MPI_File_set_size works for files over 2GB]) - AC_CACHE_VAL([hdf5_cv_mpi_file_set_size_big], [hdf5_cv_mpi_file_set_size_big=yes]) - - if test ${hdf5_cv_mpi_file_set_size_big} = "yes"; then - AC_DEFINE([MPI_FILE_SET_SIZE_BIG], [1], - [Define if your system's `MPI_File_set_size' function works for files over 2GB.]) - AC_MSG_RESULT([yes]) - else - AC_MSG_RESULT([no]) - fi - - ## ---------------------------------------------------------------------- - ## Set the flag to indicate that the MPI_File_get_size() function - ## works. The default is enabled unless the user knows the function - ## doesn't work on the system and disables it. (This flag should be set - ## for all machines except for SGI Altix Propack 4 where the function - ## doesn't return correct file size.) - ## - AC_ARG_ENABLE([mpi-size], - [AS_HELP_STRING([--enable-mpi-size], - [Some systems (only SGI Altix Propack 4 so far) return wrong value - from MPI_File_get_size. By disabling this function, the library - will replace it with stat to get the correct file size. - [default=yes]])], - [MPI_GET_SIZE=$enableval]) - - AC_MSG_CHECKING([if MPI_File_get_size is enabled]) - - AC_SUBST(MPI_GET_SIZE) - case "X-$MPI_GET_SIZE" in - X-no) - AC_MSG_RESULT([no]) - MPI_GET_SIZE=no - ;; - X-yes|*) - AC_MSG_RESULT([yes]) - MPI_GET_SIZE=yes - AC_DEFINE([HAVE_MPI_GET_SIZE], [1], - [Define if MPI_File_get_size works correctly]) - ;; - esac fi ## ---------------------------------------------------------------------- diff --git a/examples/Makefile.in b/examples/Makefile.in index d3a5975..48b3221 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -452,7 +452,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/fortran/Makefile.in b/fortran/Makefile.in index b1c7f6a..4d8abdc 100644 --- a/fortran/Makefile.in +++ b/fortran/Makefile.in @@ -508,7 +508,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in index 890d52a..b9b5efb 100644 --- a/fortran/examples/Makefile.in +++ b/fortran/examples/Makefile.in @@ -460,7 +460,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/fortran/src/Makefile.in b/fortran/src/Makefile.in index a10039f..d154000 100644 --- a/fortran/src/Makefile.in +++ b/fortran/src/Makefile.in @@ -569,7 +569,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -733,7 +732,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 AM_FCLIBS = $(LIBHDF5) diff --git a/fortran/test/Makefile.in b/fortran/test/Makefile.in index 0b3935b..ca91cf5 100644 --- a/fortran/test/Makefile.in +++ b/fortran/test/Makefile.in @@ -578,7 +578,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/fortran/testpar/Makefile.in b/fortran/testpar/Makefile.in index 989c626..583b6dc 100644 --- a/fortran/testpar/Makefile.in +++ b/fortran/testpar/Makefile.in @@ -504,7 +504,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/Makefile.in b/hl/Makefile.in index 17a1ff0..cda0122 100644 --- a/hl/Makefile.in +++ b/hl/Makefile.in @@ -508,7 +508,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in index 4b11ad8..3839814 100644 --- a/hl/c++/Makefile.in +++ b/hl/c++/Makefile.in @@ -504,7 +504,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in index 3938a3b..5712043 100644 --- a/hl/c++/examples/Makefile.in +++ b/hl/c++/examples/Makefile.in @@ -451,7 +451,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in index 17ce184..a4cb55c 100644 --- a/hl/c++/src/Makefile.in +++ b/hl/c++/src/Makefile.in @@ -510,7 +510,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -674,7 +673,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 # This is our main target diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in index cee963a..f6bd246 100644 --- a/hl/c++/test/Makefile.in +++ b/hl/c++/test/Makefile.in @@ -507,7 +507,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in index 2bf5764..6bbf493 100644 --- a/hl/examples/Makefile.in +++ b/hl/examples/Makefile.in @@ -451,7 +451,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in index c2d6610..8fe9e35 100644 --- a/hl/fortran/Makefile.in +++ b/hl/fortran/Makefile.in @@ -508,7 +508,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in index 1eb9c9d..1051658 100644 --- a/hl/fortran/examples/Makefile.in +++ b/hl/fortran/examples/Makefile.in @@ -451,7 +451,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in index 2c7ca72..84f9728 100644 --- a/hl/fortran/src/Makefile.in +++ b/hl/fortran/src/Makefile.in @@ -525,7 +525,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -689,7 +688,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 # Our main target, the high-level fortran library diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in index e142edf..4a929a6 100644 --- a/hl/fortran/test/Makefile.in +++ b/hl/fortran/test/Makefile.in @@ -516,7 +516,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in index 4c71b48..81868cc 100644 --- a/hl/src/Makefile.in +++ b/hl/src/Makefile.in @@ -506,7 +506,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -670,7 +669,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 # This library is our main target. diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in index 0bb4abe..a002482 100644 --- a/hl/test/Makefile.in +++ b/hl/test/Makefile.in @@ -543,7 +543,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/test/test_ds.c b/hl/test/test_ds.c index 57a2b89..77d2b71 100644 --- a/hl/test/test_ds.c +++ b/hl/test/test_ds.c @@ -29,8 +29,8 @@ static herr_t op_continue(hid_t did, unsigned dim, hid_t dsid, void *visitor_dat static herr_t op_stop(hid_t did, unsigned dim, hid_t dsid, void *visitor_data); /* prototypes */ -static int create_test_file(const char *fileext); -static int open_test_file(const char *fileext); +static hid_t create_test_file(const char *fileext); +static hid_t open_test_file(const char *fileext); herr_t create_char_dataset(hid_t fid, const char *dsidx, int fulldims); herr_t create_short_dataset(hid_t fid, const char *dsidx, int fulldims); herr_t create_int_dataset(hid_t fid, const char *dsidx, int fulldims); diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in index 5247b54..a34e225 100644 --- a/hl/tools/Makefile.in +++ b/hl/tools/Makefile.in @@ -505,7 +505,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in index 0652ddb..1c9be68 100644 --- a/hl/tools/gif2h5/Makefile.in +++ b/hl/tools/gif2h5/Makefile.in @@ -519,7 +519,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/perform/Makefile.in b/perform/Makefile.in index 8698c46..8db63de 100644 --- a/perform/Makefile.in +++ b/perform/Makefile.in @@ -546,7 +546,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/release_docs/RELEASE.txt b/release_docs/RELEASE.txt index b5b8c29..11112ae 100644 --- a/release_docs/RELEASE.txt +++ b/release_docs/RELEASE.txt @@ -1,4 +1,4 @@ -HDF5 version 1.9.187 currently under development +HDF5 version 1.9.189 currently under development ================================================================================ diff --git a/src/H5FDmpio.c b/src/H5FDmpio.c index d4b8fdc..8162ccd 100644 --- a/src/H5FDmpio.c +++ b/src/H5FDmpio.c @@ -1004,9 +1004,6 @@ H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id, MPI_Comm comm_dup=MPI_COMM_NULL; MPI_Info info_dup=MPI_INFO_NULL; H5FD_t *ret_value; /* Return value */ -#ifndef H5_HAVE_MPI_GET_SIZE - h5_stat_t stat_buf; -#endif FUNC_ENTER_NOAPI_NOINIT @@ -1081,18 +1078,8 @@ H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id, /* Only processor p0 will get the filesize and broadcast it. */ if (mpi_rank == 0) { - /* Get current file size. If MPI_File_get_size is disabled in configuration - * because it doesn't return correct value (SGI Altix Propack 4), - * use stat to get the file size. */ -#ifdef H5_HAVE_MPI_GET_SIZE if (MPI_SUCCESS != (mpi_code=MPI_File_get_size(fh, &size))) HMPI_GOTO_ERROR(NULL, "MPI_File_get_size failed", mpi_code) -#else - if((mpi_code=HDstat(name, &stat_buf))<0) - HMPI_GOTO_ERROR(NULL, "stat failed", mpi_code) - /* Hopefully this casting is safe */ - size = (MPI_Offset)(stat_buf.st_size); -#endif } /* end if */ /* Broadcast file size */ @@ -1989,36 +1976,12 @@ H5FD_mpio_truncate(H5FD_t *_file, hid_t UNUSED dxpl_id, hbool_t UNUSED closing) int mpi_code; /* mpi return code */ MPI_Offset mpi_off; -#ifdef H5_MPI_FILE_SET_SIZE_BIG if(H5FD_mpi_haddr_to_MPIOff(file->eoa, &mpi_off) < 0) HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "cannot convert from haddr_t to MPI_Offset") /* Extend the file's size */ if(MPI_SUCCESS != (mpi_code = MPI_File_set_size(file->f, mpi_off))) HMPI_GOTO_ERROR(FAIL, "MPI_File_set_size failed", mpi_code) -#else /* H5_MPI_FILE_SET_SIZE_BIG */ - /* Wait until all processes are here before reading/writing the byte at - * process 0's end of address space. The window for corruption is - * probably tiny, but does exist... - */ - if(MPI_SUCCESS != (mpi_code = MPI_Barrier(file->comm))) - HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code) - - if(0 == file->mpi_rank) { - uint8_t byte = 0; - MPI_Status mpi_stat; - - /* Portably initialize MPI status variable */ - HDmemset(&mpi_stat, 0, sizeof(MPI_Status)); - - if(H5FD_mpi_haddr_to_MPIOff(file->eoa-1, &mpi_off) < 0) - HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "cannot convert from haddr_t to MPI_Offset") - if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, &byte, 1, MPI_BYTE, &mpi_stat))) - HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code) - if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, &byte, 1, MPI_BYTE, &mpi_stat))) - HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code) - } /* end if */ -#endif /* H5_MPI_FILE_SET_SIZE_BIG */ /* Don't let any proc return until all have extended the file. * (Prevents race condition where some processes go ahead and write diff --git a/src/H5Lpublic.h b/src/H5Lpublic.h index 620d2e9..20b57e5 100644 --- a/src/H5Lpublic.h +++ b/src/H5Lpublic.h @@ -101,7 +101,7 @@ typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); /* Callback during link traversal */ -typedef herr_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, +typedef hid_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); /* Callback for when the link is deleted */ diff --git a/src/H5config.h.in b/src/H5config.h.in index 82925bf..daf7d0d 100644 --- a/src/H5config.h.in +++ b/src/H5config.h.in @@ -253,9 +253,6 @@ /* Define to 1 if you have the <mpe.h> header file. */ #undef HAVE_MPE_H -/* Define if MPI_File_get_size works correctly */ -#undef HAVE_MPI_GET_SIZE - /* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */ #undef HAVE_MPI_MULTI_LANG_Comm @@ -479,10 +476,6 @@ /* Define if the metadata trace file code is to be compiled in */ #undef METADATA_TRACE_FILE -/* Define if your system's `MPI_File_set_size' function works for files over - 2GB. */ -#undef MPI_FILE_SET_SIZE_BIG - /* Define if we can violate pointer alignment restrictions */ #undef NO_ALIGNMENT_RESTRICTIONS diff --git a/src/H5public.h b/src/H5public.h index e192393..56a4cfb 100644 --- a/src/H5public.h +++ b/src/H5public.h @@ -94,10 +94,10 @@ extern "C" { /* Version numbers */ #define H5_VERS_MAJOR 1 /* For major interface/format changes */ #define H5_VERS_MINOR 9 /* For minor interface/format changes */ -#define H5_VERS_RELEASE 187 /* For tweaks, bug-fixes, or development */ +#define H5_VERS_RELEASE 189 /* For tweaks, bug-fixes, or development */ #define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */ /* Empty string for real releases. */ -#define H5_VERS_INFO "HDF5 library version: 1.9.187" /* Full version string */ +#define H5_VERS_INFO "HDF5 library version: 1.9.189" /* Full version string */ #define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \ H5_VERS_RELEASE) diff --git a/src/Makefile.in b/src/Makefile.in index 0b015e2..5e248e5 100644 --- a/src/Makefile.in +++ b/src/Makefile.in @@ -569,7 +569,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ @@ -733,7 +732,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog # Add libtool shared library version numbers to the HDF5 library # See libtool versioning documentation online. LT_VERS_INTERFACE = 6 -LT_VERS_REVISION = 177 +LT_VERS_REVISION = 179 LT_VERS_AGE = 0 # Our main target, the HDF5 library diff --git a/test/Makefile.in b/test/Makefile.in index 2ac76fe..b4d0cf9 100644 --- a/test/Makefile.in +++ b/test/Makefile.in @@ -911,7 +911,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/test/dsets.c b/test/dsets.c index 3cd303f..af99ee1 100644 --- a/test/dsets.c +++ b/test/dsets.c @@ -50,6 +50,7 @@ const char *FILENAME[] = { "chunk_expand", "copy_dcpl_newfile", "layout_extend", + "zero_chunk", NULL }; #define FILENAME_BUF_SIZE 1024 @@ -8192,6 +8193,80 @@ error: /*------------------------------------------------------------------------- + * Function: test_zero_dim_dset + * + * Purpose: Tests support for reading a 1D chunled dataset with + * dimension size = 0. + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Mohamad Chaarawi + * Wednesdat, July 9, 2014 + * + *------------------------------------------------------------------------- + */ +static herr_t +test_zero_dim_dset(hid_t fapl) +{ + char filename[FILENAME_BUF_SIZE]; + hid_t fid = -1; /* File ID */ + hid_t dcpl = -1; /* Dataset creation property list ID */ + hid_t sid = -1; /* Dataspace ID */ + hid_t dsid = -1; /* Dataset ID */ + hsize_t dim, chunk_dim; /* Dataset and chunk dimensions */ + int data[1]; + + TESTING("shrinking large chunk"); + + h5_fixname(FILENAME[13], fapl, filename, sizeof filename); + + /* Create file */ + if((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) FAIL_STACK_ERROR + + /* Create dataset creation property list */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) FAIL_STACK_ERROR + + /* Set 1 chunk size */ + chunk_dim = 1; + if(H5Pset_chunk(dcpl, 1, &chunk_dim) < 0) FAIL_STACK_ERROR + + /* Create 1D dataspace with 0 dim size */ + dim = 0; + if((sid = H5Screate_simple(1, &dim, NULL)) < 0) FAIL_STACK_ERROR + + /* Create chunked dataset */ + if((dsid = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + FAIL_STACK_ERROR + + /* write 0 elements from dataset */ + if(H5Dwrite(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + + /* Read 0 elements from dataset */ + if(H5Dread(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data) < 0) FAIL_STACK_ERROR + + /* Close everything */ + if(H5Sclose(sid) < 0) FAIL_STACK_ERROR + if(H5Dclose(dsid) < 0) FAIL_STACK_ERROR + if(H5Pclose(dcpl) < 0) FAIL_STACK_ERROR + if(H5Fclose(fid) < 0) FAIL_STACK_ERROR + + PASSED(); + + return 0; + +error: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Dclose(dsid); + H5Sclose(sid); + H5Fclose(fid); + } H5E_END_TRY; + return -1; +} /* end test_zero_dim_dset() */ + + +/*------------------------------------------------------------------------- * Function: test_scatter * * Purpose: Tests H5Dscatter with a variety of different selections @@ -9340,6 +9415,7 @@ main(void) nerrors += (test_chunk_expand(my_fapl) < 0 ? 1 : 0); nerrors += (test_layout_extend(my_fapl) < 0 ? 1 : 0); nerrors += (test_large_chunk_shrink(my_fapl) < 0 ? 1 : 0); + nerrors += (test_zero_dim_dset(my_fapl) < 0 ? 1 : 0); if(H5Fclose(file) < 0) goto error; diff --git a/testpar/Makefile.in b/testpar/Makefile.in index 5a866fc..6814acb 100644 --- a/testpar/Makefile.in +++ b/testpar/Makefile.in @@ -525,7 +525,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/testpar/t_chunk_alloc.c b/testpar/t_chunk_alloc.c index e8a6ca4..b2ddc23 100644 --- a/testpar/t_chunk_alloc.c +++ b/testpar/t_chunk_alloc.c @@ -36,11 +36,7 @@ get_filesize(const char *filename) int mpierr; MPI_File fd; MPI_Offset filesize; -#ifndef H5_HAVE_MPI_GET_SIZE - h5_stat_t stat_buf; -#endif -#ifdef H5_HAVE_MPI_GET_SIZE mpierr = MPI_File_open(MPI_COMM_SELF, (char*)filename, MPI_MODE_RDONLY, MPI_INFO_NULL, &fd); VRFY((mpierr == MPI_SUCCESS), ""); @@ -50,16 +46,6 @@ get_filesize(const char *filename) mpierr = MPI_File_close(&fd); VRFY((mpierr == MPI_SUCCESS), ""); -#else - /* Some systems (only SGI Altix Propack 4 so far) doesn't return correct - * file size for MPI_File_get_size. Use stat instead. - */ - if((mpierr=HDstat(filename, &stat_buf))<0) - VRFY((mpierr == MPI_SUCCESS), ""); - - /* Hopefully this casting is safe */ - filesize = (MPI_Offset)(stat_buf.st_size); -#endif return(filesize); } diff --git a/testpar/t_mdset.c b/testpar/t_mdset.c index fa1a980..f294b93 100644 --- a/testpar/t_mdset.c +++ b/testpar/t_mdset.c @@ -74,6 +74,63 @@ get_size(void) } /* get_size() */ /* + * Example of using PHDF5 to create a zero sized dataset. + * + */ +void zero_dim_dset(void) +{ + int mpi_size, mpi_rank; + const char *filename; + hid_t fid, plist, dcpl, dsid, sid; + hsize_t dim, chunk_dim; + herr_t ret; + int data[1]; + + MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank); + MPI_Comm_size(MPI_COMM_WORLD, &mpi_size); + + filename = GetTestParameters(); + + plist = create_faccess_plist(MPI_COMM_WORLD, MPI_INFO_NULL, facc_type); + VRFY((plist>=0), "create_faccess_plist succeeded"); + + fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, plist); + VRFY((fid>=0), "H5Fcreate succeeded"); + ret = H5Pclose(plist); + VRFY((ret>=0), "H5Pclose succeeded"); + + dcpl = H5Pcreate(H5P_DATASET_CREATE); + VRFY((dcpl>=0), "failed H5Pcreate"); + + /* Set 1 chunk size */ + chunk_dim = 1; + ret = H5Pset_chunk(dcpl, 1, &chunk_dim); + VRFY((ret>=0), "failed H5Pset_chunk"); + + /* Create 1D dataspace with 0 dim size */ + dim = 0; + sid = H5Screate_simple(1, &dim, NULL); + VRFY((sid>=0), "failed H5Screate_simple"); + + /* Create chunked dataset */ + dsid = H5Dcreate2(fid, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT); + VRFY((dsid>=0), "failed H5Dcreate2"); + + /* write 0 elements from dataset */ + ret = H5Dwrite(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data); + VRFY((ret>=0), "failed H5Dwrite"); + + /* Read 0 elements from dataset */ + ret = H5Dread(dsid, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data); + VRFY((ret>=0), "failed H5Dread"); + + H5Pclose(dcpl); + H5Dclose(dsid); + H5Sclose(sid); + H5Fclose(fid); +} + +/* * Example of using PHDF5 to create ndatasets datasets. Each process write * a slab of array to the file. * diff --git a/testpar/t_mpi.c b/testpar/t_mpi.c index a74aa22..7bd2f58 100644 --- a/testpar/t_mpi.c +++ b/testpar/t_mpi.c @@ -206,7 +206,6 @@ test_mpio_gb_file(char *filename) MPI_Offset mpi_off; MPI_Offset mpi_off_old; MPI_Status mpi_stat; - h5_stat_t stat_buf; int is_signed, sizeof_mpi_offset; nerrs = 0; @@ -380,13 +379,7 @@ test_mpio_gb_file(char *filename) mrc = MPI_Barrier(MPI_COMM_WORLD); VRFY((mrc==MPI_SUCCESS), "Sync before leaving test"); - /* - * Check if MPI_File_get_size works correctly. Some systems (only SGI Altix - * Propack 4 so far) return wrong file size. It can be avoided by reconfiguring - * with "--disable-mpi-size". - */ -#ifdef H5_HAVE_MPI_GET_SIZE - printf("Test if MPI_File_get_size works correctly with %s\n", filename); + printf("Test if MPI_File_get_size works correctly with %s\n", filename); mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh); VRFY((mrc==MPI_SUCCESS), ""); @@ -394,14 +387,7 @@ test_mpio_gb_file(char *filename) if (MAINPROCESS){ /* only process 0 needs to check it*/ mrc = MPI_File_get_size(fh, &size); VRFY((mrc==MPI_SUCCESS), ""); - - mrc=HDstat(filename, &stat_buf); - VRFY((mrc==0), ""); - - /* Hopefully this casting is safe */ - if(size != (MPI_Offset)(stat_buf.st_size)) { - printf("Warning: MPI_File_get_size doesn't return correct file size. To avoid using it in the library, reconfigure and rebuild the library with --disable-mpi-size.\n"); - } + VRFY((size == mpi_off+MB), "MPI_File_get_size doesn't return correct file size."); } /* close file and free the communicator */ @@ -414,9 +400,6 @@ test_mpio_gb_file(char *filename) */ mrc = MPI_Barrier(MPI_COMM_WORLD); VRFY((mrc==MPI_SUCCESS), "Sync before leaving test"); -#else - printf("Skipped testing MPI_File_get_size because it's disabled\n"); -#endif } finish: diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c index 0b97c03..057ac88 100644 --- a/testpar/testphdf5.c +++ b/testpar/testphdf5.c @@ -377,6 +377,9 @@ int main(int argc, char **argv) "compressed dataset collective read", PARATESTFILE); #endif /* H5_HAVE_FILTER_DEFLATE */ + AddTest("zerodsetr", zero_dim_dset, NULL, + "zero dim dset", PARATESTFILE); + ndsets_params.name = PARATESTFILE; ndsets_params.count = ndatasets; AddTest("ndsetw", multiple_dset_write, NULL, diff --git a/testpar/testphdf5.h b/testpar/testphdf5.h index f313073..3597b17 100644 --- a/testpar/testphdf5.h +++ b/testpar/testphdf5.h @@ -237,6 +237,7 @@ extern int dxfer_coll_type; /* Test program prototypes */ void test_plist_ed(void); +void zero_dim_dset(void); void multiple_dset_write(void); void multiple_group_write(void); void multiple_group_read(void); diff --git a/tools/Makefile.in b/tools/Makefile.in index c592973..0b0e2d0 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -505,7 +505,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index fef0136..76573a0 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -513,7 +513,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 08008d7..6a8d2ac 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -520,7 +520,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 9cf0a5d..16b2964 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -513,7 +513,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index 5cba138..d3b0185 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -513,7 +513,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index a50a9c9..d0c8f16 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -525,7 +525,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index af9d170..2c4fe10 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -505,7 +505,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 44ffb9d..50e7341 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -537,7 +537,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index f0c2674..32b6d4c 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -515,7 +515,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 5af2dfd..210b6b3 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -502,7 +502,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index b0a7822..1160938 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -540,7 +540,6 @@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ -MPI_GET_SIZE = @MPI_GET_SIZE@ NM = @NM@ NMEDIT = @NMEDIT@ OBJDUMP = @OBJDUMP@ diff --git a/vms/src/h5pubconf.h b/vms/src/h5pubconf.h index 2a6985d..1767266 100644 --- a/vms/src/h5pubconf.h +++ b/vms/src/h5pubconf.h @@ -256,9 +256,6 @@ /* Define to 1 if you have the <mpe.h> header file. */ /* #undef H5_HAVE_MPE_H */ -/* Define if MPI_File_get_size works correctly */ -/* #undef H5_HAVE_MPI_GET_SIZE */ - /* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */ /* #undef H5_HAVE_MPI_MULTI_LANG_Comm */ @@ -488,10 +485,6 @@ /* Define if the metadata trace file code is to be compiled in */ /* #undef H5_METADATA_TRACE_FILE */ -/* Define if your system's `MPI_File_set_size' function works for files over - 2GB. */ -/* #undef H5_MPI_FILE_SET_SIZE_BIG */ - /* Define if we can violate pointer alignment restrictions */ #define H5_NO_ALIGNMENT_RESTRICTIONS 1 @@ -511,7 +504,7 @@ #define H5_PACKAGE_NAME "HDF5" /* Define to the full name and version of this package. */ -#define H5_PACKAGE_STRING "HDF5 1.9.187" +#define H5_PACKAGE_STRING "HDF5 1.9.189" /* Define to the one symbol short name of this package. */ #define H5_PACKAGE_TARNAME "hdf5" @@ -520,7 +513,7 @@ #define H5_PACKAGE_URL "" /* Define to the version of this package. */ -#define H5_PACKAGE_VERSION "1.9.187" +#define H5_PACKAGE_VERSION "1.9.189" /* Width for printf() for type `long long' or `__int64', use `ll' */ #define H5_PRINTF_LL_WIDTH "ll" @@ -683,7 +676,7 @@ /* #undef H5_USING_MEMCHECKER */ /* Version number of package */ -#define H5_VERSION "1.9.187" +#define H5_VERSION "1.9.189" /* Define if vsnprintf() returns the correct value for formatted strings that don't fit into size allowed */ |